Multiple sequence alignment - TraesCS7D01G153600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G153600 chr7D 100.000 4746 0 0 1 4746 101725474 101730219 0.000000e+00 8765.0
1 TraesCS7D01G153600 chr7D 81.941 443 49 16 1378 1813 101734333 101734751 3.520000e-91 346.0
2 TraesCS7D01G153600 chr7D 90.323 93 8 1 3897 3989 12622757 12622848 2.320000e-23 121.0
3 TraesCS7D01G153600 chr7D 75.547 274 42 13 2341 2613 101735355 101735604 1.400000e-20 111.0
4 TraesCS7D01G153600 chr7B 95.981 2140 60 12 2612 4746 59061728 59063846 0.000000e+00 3452.0
5 TraesCS7D01G153600 chr7B 87.868 1154 75 25 860 1971 59060577 59061707 0.000000e+00 1295.0
6 TraesCS7D01G153600 chr7B 80.000 670 95 26 2341 2998 59069384 59070026 4.330000e-125 459.0
7 TraesCS7D01G153600 chr7B 81.445 512 67 17 1378 1883 59068004 59068493 1.240000e-105 394.0
8 TraesCS7D01G153600 chr7B 86.000 350 23 15 280 616 59060048 59060384 7.560000e-93 351.0
9 TraesCS7D01G153600 chr7B 87.000 300 21 12 1 295 59059594 59059880 5.920000e-84 322.0
10 TraesCS7D01G153600 chr7A 79.460 1407 184 57 2341 3726 105506542 105507864 0.000000e+00 900.0
11 TraesCS7D01G153600 chr7A 93.113 363 14 7 1 360 105501076 105501430 5.440000e-144 521.0
12 TraesCS7D01G153600 chr7A 91.579 95 5 1 3723 3817 105507956 105508047 1.390000e-25 128.0
13 TraesCS7D01G153600 chr7A 89.189 74 6 1 4269 4340 126125651 126125724 1.820000e-14 91.6
14 TraesCS7D01G153600 chr3A 91.398 93 7 1 3897 3989 718987889 718987798 4.990000e-25 126.0
15 TraesCS7D01G153600 chrUn 90.323 93 8 1 3897 3989 45089567 45089658 2.320000e-23 121.0
16 TraesCS7D01G153600 chrUn 90.323 93 8 1 3897 3989 171039854 171039945 2.320000e-23 121.0
17 TraesCS7D01G153600 chr6D 90.323 93 8 1 3897 3989 83969628 83969719 2.320000e-23 121.0
18 TraesCS7D01G153600 chr4D 90.323 93 8 1 3897 3989 398045222 398045131 2.320000e-23 121.0
19 TraesCS7D01G153600 chr4B 90.323 93 8 1 3897 3989 209316391 209316482 2.320000e-23 121.0
20 TraesCS7D01G153600 chr4B 97.143 35 1 0 2087 2121 656875760 656875794 5.130000e-05 60.2
21 TraesCS7D01G153600 chr1D 90.323 93 8 1 3897 3989 275766202 275766293 2.320000e-23 121.0
22 TraesCS7D01G153600 chr6B 90.789 76 5 1 4269 4342 388128789 388128864 3.020000e-17 100.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G153600 chr7D 101725474 101730219 4745 False 8765.0 8765 100.00000 1 4746 1 chr7D.!!$F2 4745
1 TraesCS7D01G153600 chr7D 101734333 101735604 1271 False 228.5 346 78.74400 1378 2613 2 chr7D.!!$F3 1235
2 TraesCS7D01G153600 chr7B 59059594 59063846 4252 False 1355.0 3452 89.21225 1 4746 4 chr7B.!!$F1 4745
3 TraesCS7D01G153600 chr7B 59068004 59070026 2022 False 426.5 459 80.72250 1378 2998 2 chr7B.!!$F2 1620
4 TraesCS7D01G153600 chr7A 105506542 105508047 1505 False 514.0 900 85.51950 2341 3817 2 chr7A.!!$F3 1476

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
339 527 0.038709 GCACTCTCAGTTGAGCTCGT 60.039 55.0 9.64 0.0 41.80 4.18 F
819 1039 0.249911 GTCTGCCTGTCCGTCTGTTT 60.250 55.0 0.00 0.0 0.00 2.83 F
1583 1815 0.246757 CGCACTGTTAACATCGTCGC 60.247 55.0 9.13 9.7 0.00 5.19 F
2256 2823 0.037232 AGTACTTCTTCACCAGCCGC 60.037 55.0 0.00 0.0 0.00 6.53 F
3127 3874 0.098376 GCTTCTTGGAAGCGAGCATG 59.902 55.0 14.99 0.0 35.99 4.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1565 1797 0.094730 GGCGACGATGTTAACAGTGC 59.905 55.000 14.65 11.98 0.00 4.40 R
2188 2700 0.888285 GGCACTTGAGCAGCACTTCT 60.888 55.000 0.00 0.00 35.83 2.85 R
3136 3883 1.065600 GCCAACGACTGCAAAGCAA 59.934 52.632 0.00 0.00 38.41 3.91 R
3718 4476 1.398390 GCCACATCTCCAAAGTAAGCG 59.602 52.381 0.00 0.00 0.00 4.68 R
4484 5341 1.396644 GACGAGACAATACGCGATCC 58.603 55.000 15.93 0.00 36.92 3.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 8.985315 TTTCCAGTGATGAGCATTATTATCTT 57.015 30.769 0.00 0.00 0.00 2.40
27 28 6.429078 TCCAGTGATGAGCATTATTATCTTGC 59.571 38.462 0.00 0.00 36.63 4.01
28 29 6.304882 CAGTGATGAGCATTATTATCTTGCG 58.695 40.000 0.00 0.00 41.22 4.85
29 30 6.146673 CAGTGATGAGCATTATTATCTTGCGA 59.853 38.462 0.00 0.00 41.22 5.10
44 45 3.990469 TCTTGCGAAACTAAGAAGCTCTG 59.010 43.478 0.00 0.00 30.49 3.35
54 55 7.475137 AACTAAGAAGCTCTGTGTATCTTCT 57.525 36.000 0.00 0.00 44.91 2.85
71 72 9.337396 TGTATCTTCTGCAGAAACTTAGAAAAA 57.663 29.630 28.16 10.08 34.16 1.94
112 113 2.354259 CTGTTGTTGATCTCTGGAGCC 58.646 52.381 0.00 0.00 0.00 4.70
116 117 1.833630 TGTTGATCTCTGGAGCCGATT 59.166 47.619 0.00 0.00 0.00 3.34
143 144 0.529833 CAATTGCATACCGGTTGCCA 59.470 50.000 27.59 21.39 39.39 4.92
202 203 4.471025 TGCATCTTAGTTTCCATCTCAGGA 59.529 41.667 0.00 0.00 35.41 3.86
203 204 5.045651 TGCATCTTAGTTTCCATCTCAGGAA 60.046 40.000 0.00 0.00 45.61 3.36
233 238 2.787601 AGTCTTAAGTTGTGCGTCGA 57.212 45.000 1.63 0.00 0.00 4.20
236 241 1.790623 TCTTAAGTTGTGCGTCGAAGC 59.209 47.619 16.84 16.84 37.71 3.86
276 281 5.390613 ACTTGTATTTCTCAATTTTCGCCG 58.609 37.500 0.00 0.00 0.00 6.46
316 504 1.463444 GGACCGTGCTGTAATGTTGTC 59.537 52.381 0.00 0.00 0.00 3.18
329 517 1.570813 TGTTGTCGTTGCACTCTCAG 58.429 50.000 0.00 0.00 0.00 3.35
336 524 1.871408 CGTTGCACTCTCAGTTGAGCT 60.871 52.381 4.25 0.00 41.80 4.09
337 525 1.797635 GTTGCACTCTCAGTTGAGCTC 59.202 52.381 6.82 6.82 41.80 4.09
338 526 0.038801 TGCACTCTCAGTTGAGCTCG 60.039 55.000 9.64 0.00 41.80 5.03
339 527 0.038709 GCACTCTCAGTTGAGCTCGT 60.039 55.000 9.64 0.00 41.80 4.18
340 528 1.200252 GCACTCTCAGTTGAGCTCGTA 59.800 52.381 9.64 0.00 41.80 3.43
341 529 2.857618 CACTCTCAGTTGAGCTCGTAC 58.142 52.381 9.64 9.86 41.80 3.67
365 553 8.758633 ACTACTGTCAATTGTAACATGACTAC 57.241 34.615 5.13 1.05 42.99 2.73
386 575 8.125728 ACTACAACATTAAATTGTTTGTGTGC 57.874 30.769 12.24 0.00 40.68 4.57
390 579 6.267500 ACATTAAATTGTTTGTGTGCGTTC 57.733 33.333 0.00 0.00 0.00 3.95
392 581 2.834574 AATTGTTTGTGTGCGTTCGA 57.165 40.000 0.00 0.00 0.00 3.71
404 593 2.073056 TGCGTTCGATAAACAGTGCAT 58.927 42.857 0.00 0.00 37.77 3.96
405 594 2.159720 TGCGTTCGATAAACAGTGCATG 60.160 45.455 0.00 0.00 37.77 4.06
427 616 7.497249 GCATGTGTTTCTCCATAAGAATCTACT 59.503 37.037 0.00 0.00 43.50 2.57
430 619 9.256228 TGTGTTTCTCCATAAGAATCTACTAGT 57.744 33.333 0.00 0.00 43.50 2.57
452 641 7.546250 AGTAAGTAGTATTGCTGATAGCCAT 57.454 36.000 0.00 0.00 41.51 4.40
461 650 3.995199 TGCTGATAGCCATGTAGTTAGC 58.005 45.455 0.00 0.00 41.51 3.09
464 653 2.288825 TGATAGCCATGTAGTTAGCGCC 60.289 50.000 2.29 0.00 0.00 6.53
479 668 0.515564 GCGCCGAAAGTTGAAAGCTA 59.484 50.000 0.00 0.00 0.00 3.32
493 682 1.033574 AAGCTACTCCCTCCGATTCG 58.966 55.000 0.00 0.00 0.00 3.34
541 731 8.237949 TGTTCAAAACGTCTTTCAGTTTGATAA 58.762 29.630 9.43 0.83 40.07 1.75
578 768 5.660629 TGTACCAACGTCTAAAACATGTG 57.339 39.130 0.00 0.00 0.00 3.21
579 769 4.512198 TGTACCAACGTCTAAAACATGTGG 59.488 41.667 0.00 0.00 0.00 4.17
581 771 4.706035 ACCAACGTCTAAAACATGTGGTA 58.294 39.130 0.00 0.00 35.33 3.25
582 772 4.753107 ACCAACGTCTAAAACATGTGGTAG 59.247 41.667 0.00 4.38 35.33 3.18
585 775 6.402118 CCAACGTCTAAAACATGTGGTAGATG 60.402 42.308 23.98 23.98 36.23 2.90
587 777 6.927416 ACGTCTAAAACATGTGGTAGATGTA 58.073 36.000 27.11 3.35 39.76 2.29
588 778 7.380536 ACGTCTAAAACATGTGGTAGATGTAA 58.619 34.615 27.11 6.34 39.76 2.41
589 779 7.874016 ACGTCTAAAACATGTGGTAGATGTAAA 59.126 33.333 27.11 5.82 39.76 2.01
590 780 8.879759 CGTCTAAAACATGTGGTAGATGTAAAT 58.120 33.333 20.43 0.00 32.74 1.40
646 866 6.289834 TGACATTTTGGAACGGAGTAAGTAA 58.710 36.000 0.00 0.00 45.00 2.24
649 869 8.851541 ACATTTTGGAACGGAGTAAGTAATTA 57.148 30.769 0.00 0.00 45.00 1.40
651 871 9.550811 CATTTTGGAACGGAGTAAGTAATTAAC 57.449 33.333 0.00 0.00 45.00 2.01
656 876 6.312180 GGAACGGAGTAAGTAATTAACAGTGG 59.688 42.308 0.00 0.00 45.00 4.00
681 901 1.130561 GCCGATAAGGTTGCAGTTGAC 59.869 52.381 0.00 0.00 43.70 3.18
687 907 0.740737 AGGTTGCAGTTGACAAGCAC 59.259 50.000 15.44 0.00 45.58 4.40
688 908 0.455410 GGTTGCAGTTGACAAGCACA 59.545 50.000 1.84 0.00 43.30 4.57
691 911 2.495409 TGCAGTTGACAAGCACAATG 57.505 45.000 0.00 0.00 32.55 2.82
698 918 6.568462 GCAGTTGACAAGCACAATGTTATACT 60.568 38.462 0.00 0.00 0.00 2.12
699 919 7.362662 CAGTTGACAAGCACAATGTTATACTT 58.637 34.615 0.00 0.00 0.00 2.24
700 920 7.535258 CAGTTGACAAGCACAATGTTATACTTC 59.465 37.037 0.00 0.00 0.00 3.01
701 921 6.494893 TGACAAGCACAATGTTATACTTCC 57.505 37.500 0.00 0.00 0.00 3.46
702 922 5.414454 TGACAAGCACAATGTTATACTTCCC 59.586 40.000 0.00 0.00 0.00 3.97
703 923 4.705023 ACAAGCACAATGTTATACTTCCCC 59.295 41.667 0.00 0.00 0.00 4.81
704 924 4.862641 AGCACAATGTTATACTTCCCCT 57.137 40.909 0.00 0.00 0.00 4.79
705 925 4.526970 AGCACAATGTTATACTTCCCCTG 58.473 43.478 0.00 0.00 0.00 4.45
706 926 4.018415 AGCACAATGTTATACTTCCCCTGT 60.018 41.667 0.00 0.00 0.00 4.00
707 927 5.190925 AGCACAATGTTATACTTCCCCTGTA 59.809 40.000 0.00 0.00 0.00 2.74
708 928 5.883673 GCACAATGTTATACTTCCCCTGTAA 59.116 40.000 0.00 0.00 0.00 2.41
709 929 6.183360 GCACAATGTTATACTTCCCCTGTAAC 60.183 42.308 0.00 0.00 0.00 2.50
710 930 7.110155 CACAATGTTATACTTCCCCTGTAACT 58.890 38.462 0.00 0.00 0.00 2.24
711 931 7.610305 CACAATGTTATACTTCCCCTGTAACTT 59.390 37.037 0.00 0.00 0.00 2.66
712 932 8.168058 ACAATGTTATACTTCCCCTGTAACTTT 58.832 33.333 0.00 0.00 0.00 2.66
713 933 9.020731 CAATGTTATACTTCCCCTGTAACTTTT 57.979 33.333 0.00 0.00 0.00 2.27
714 934 9.596308 AATGTTATACTTCCCCTGTAACTTTTT 57.404 29.630 0.00 0.00 0.00 1.94
743 963 8.480643 AGTAGAACAGTAATTAACAGTGATGC 57.519 34.615 0.00 0.00 0.00 3.91
745 965 7.986085 AGAACAGTAATTAACAGTGATGCTT 57.014 32.000 0.00 0.00 0.00 3.91
747 967 9.672673 AGAACAGTAATTAACAGTGATGCTTAT 57.327 29.630 0.00 0.00 0.00 1.73
750 970 8.604035 ACAGTAATTAACAGTGATGCTTATTCG 58.396 33.333 0.00 0.00 0.00 3.34
751 971 7.584123 CAGTAATTAACAGTGATGCTTATTCGC 59.416 37.037 0.00 0.00 0.00 4.70
753 973 5.871465 TTAACAGTGATGCTTATTCGCAA 57.129 34.783 0.00 0.00 44.06 4.85
755 975 4.764679 ACAGTGATGCTTATTCGCAAAA 57.235 36.364 0.00 0.00 44.06 2.44
756 976 5.119931 ACAGTGATGCTTATTCGCAAAAA 57.880 34.783 0.00 0.00 44.06 1.94
809 1029 3.505464 GTATACAACGAGTCTGCCTGT 57.495 47.619 0.00 0.00 0.00 4.00
810 1030 2.656560 ATACAACGAGTCTGCCTGTC 57.343 50.000 0.00 0.00 0.00 3.51
811 1031 0.601558 TACAACGAGTCTGCCTGTCC 59.398 55.000 0.00 0.00 0.00 4.02
812 1032 1.734477 CAACGAGTCTGCCTGTCCG 60.734 63.158 0.00 0.00 0.00 4.79
813 1033 2.201022 AACGAGTCTGCCTGTCCGT 61.201 57.895 0.00 0.00 0.00 4.69
814 1034 2.143594 AACGAGTCTGCCTGTCCGTC 62.144 60.000 0.00 0.00 0.00 4.79
815 1035 2.336478 CGAGTCTGCCTGTCCGTCT 61.336 63.158 0.00 0.00 0.00 4.18
816 1036 1.214062 GAGTCTGCCTGTCCGTCTG 59.786 63.158 0.00 0.00 0.00 3.51
817 1037 1.528292 GAGTCTGCCTGTCCGTCTGT 61.528 60.000 0.00 0.00 0.00 3.41
818 1038 1.115930 AGTCTGCCTGTCCGTCTGTT 61.116 55.000 0.00 0.00 0.00 3.16
819 1039 0.249911 GTCTGCCTGTCCGTCTGTTT 60.250 55.000 0.00 0.00 0.00 2.83
820 1040 1.000506 GTCTGCCTGTCCGTCTGTTTA 59.999 52.381 0.00 0.00 0.00 2.01
821 1041 1.899814 TCTGCCTGTCCGTCTGTTTAT 59.100 47.619 0.00 0.00 0.00 1.40
822 1042 2.002586 CTGCCTGTCCGTCTGTTTATG 58.997 52.381 0.00 0.00 0.00 1.90
823 1043 1.621317 TGCCTGTCCGTCTGTTTATGA 59.379 47.619 0.00 0.00 0.00 2.15
824 1044 2.037902 TGCCTGTCCGTCTGTTTATGAA 59.962 45.455 0.00 0.00 0.00 2.57
825 1045 2.415512 GCCTGTCCGTCTGTTTATGAAC 59.584 50.000 0.00 0.00 36.29 3.18
826 1046 3.659786 CCTGTCCGTCTGTTTATGAACA 58.340 45.455 2.77 2.77 43.23 3.18
827 1047 4.062293 CCTGTCCGTCTGTTTATGAACAA 58.938 43.478 4.47 0.00 44.65 2.83
828 1048 4.695455 CCTGTCCGTCTGTTTATGAACAAT 59.305 41.667 4.47 0.00 44.65 2.71
829 1049 5.872617 CCTGTCCGTCTGTTTATGAACAATA 59.127 40.000 4.47 0.00 44.65 1.90
830 1050 6.036083 CCTGTCCGTCTGTTTATGAACAATAG 59.964 42.308 4.47 0.00 44.65 1.73
831 1051 5.872617 TGTCCGTCTGTTTATGAACAATAGG 59.127 40.000 4.47 7.67 44.65 2.57
832 1052 4.873827 TCCGTCTGTTTATGAACAATAGGC 59.126 41.667 4.47 0.00 44.65 3.93
833 1053 4.260212 CCGTCTGTTTATGAACAATAGGCG 60.260 45.833 4.47 6.35 44.65 5.52
834 1054 4.565166 CGTCTGTTTATGAACAATAGGCGA 59.435 41.667 8.74 0.00 44.65 5.54
835 1055 5.234329 CGTCTGTTTATGAACAATAGGCGAT 59.766 40.000 8.74 0.00 44.65 4.58
836 1056 6.419710 CGTCTGTTTATGAACAATAGGCGATA 59.580 38.462 8.74 0.00 44.65 2.92
837 1057 7.564988 GTCTGTTTATGAACAATAGGCGATAC 58.435 38.462 4.47 0.00 44.65 2.24
838 1058 7.438459 GTCTGTTTATGAACAATAGGCGATACT 59.562 37.037 4.47 0.00 44.65 2.12
839 1059 7.985184 TCTGTTTATGAACAATAGGCGATACTT 59.015 33.333 4.47 0.00 44.65 2.24
840 1060 8.500753 TGTTTATGAACAATAGGCGATACTTT 57.499 30.769 0.00 0.00 42.54 2.66
841 1061 8.952278 TGTTTATGAACAATAGGCGATACTTTT 58.048 29.630 0.00 0.00 42.54 2.27
842 1062 9.783256 GTTTATGAACAATAGGCGATACTTTTT 57.217 29.630 0.00 0.00 35.79 1.94
846 1066 8.725405 TGAACAATAGGCGATACTTTTTATGA 57.275 30.769 0.00 0.00 0.00 2.15
847 1067 8.826710 TGAACAATAGGCGATACTTTTTATGAG 58.173 33.333 0.00 0.00 0.00 2.90
848 1068 8.732746 AACAATAGGCGATACTTTTTATGAGT 57.267 30.769 0.00 0.00 0.00 3.41
849 1069 9.826574 AACAATAGGCGATACTTTTTATGAGTA 57.173 29.630 0.00 0.00 34.38 2.59
850 1070 9.826574 ACAATAGGCGATACTTTTTATGAGTAA 57.173 29.630 0.00 0.00 33.66 2.24
879 1099 0.404040 TGGGAAGTTCATCCGCCTTT 59.596 50.000 5.01 0.00 40.62 3.11
891 1113 2.774687 TCCGCCTTTCTTTTACTGTCC 58.225 47.619 0.00 0.00 0.00 4.02
914 1136 5.388061 CCGTCTGTATTTCGTGTGTTTACTG 60.388 44.000 0.00 0.00 0.00 2.74
919 1141 5.699001 TGTATTTCGTGTGTTTACTGCATCT 59.301 36.000 0.00 0.00 0.00 2.90
933 1155 0.370273 GCATCTCGTTCGTGCGAAAT 59.630 50.000 8.66 0.00 40.57 2.17
935 1157 2.028763 GCATCTCGTTCGTGCGAAATAA 59.971 45.455 8.66 0.00 40.57 1.40
941 1163 3.120616 TCGTTCGTGCGAAATAACTGAAG 59.879 43.478 8.66 0.00 37.99 3.02
964 1186 1.030488 TTCCGTCGGAAGAGCGATCT 61.030 55.000 22.76 0.00 43.49 2.75
988 1210 3.793144 GCCAAGCACGCGAGAAGG 61.793 66.667 15.93 9.12 0.00 3.46
1014 1236 0.813210 GAGAGATGGCAAAGGCGAGG 60.813 60.000 0.00 0.00 42.47 4.63
1093 1318 3.854669 ATCGCTTCCTCCGCCTGG 61.855 66.667 0.00 0.00 0.00 4.45
1290 1515 2.841988 GAGGAGGAGGAGGCGCAT 60.842 66.667 10.83 0.00 0.00 4.73
1509 1737 3.376935 CTCCATCCAGTTCGCCGCT 62.377 63.158 0.00 0.00 0.00 5.52
1541 1773 3.428282 CGCCCCTTTCCGTTTCCG 61.428 66.667 0.00 0.00 0.00 4.30
1552 1784 2.808321 GTTTCCGGGTCGCTCGTC 60.808 66.667 0.00 0.00 0.00 4.20
1554 1786 3.277211 TTTCCGGGTCGCTCGTCTG 62.277 63.158 0.00 0.00 0.00 3.51
1563 1795 4.863925 GCTCGTCTGCTCCGCTCC 62.864 72.222 0.00 0.00 0.00 4.70
1572 1804 4.379243 CTCCGCTCCCGCACTGTT 62.379 66.667 0.00 0.00 35.30 3.16
1573 1805 2.992689 TCCGCTCCCGCACTGTTA 60.993 61.111 0.00 0.00 35.30 2.41
1574 1806 2.047655 CCGCTCCCGCACTGTTAA 60.048 61.111 0.00 0.00 35.30 2.01
1575 1807 2.388232 CCGCTCCCGCACTGTTAAC 61.388 63.158 0.00 0.00 35.30 2.01
1576 1808 1.666553 CGCTCCCGCACTGTTAACA 60.667 57.895 8.28 8.28 35.30 2.41
1577 1809 1.019278 CGCTCCCGCACTGTTAACAT 61.019 55.000 9.13 0.00 35.30 2.71
1578 1810 0.727398 GCTCCCGCACTGTTAACATC 59.273 55.000 9.13 0.95 35.78 3.06
1579 1811 0.999406 CTCCCGCACTGTTAACATCG 59.001 55.000 9.13 12.42 0.00 3.84
1580 1812 0.319083 TCCCGCACTGTTAACATCGT 59.681 50.000 9.13 1.38 0.00 3.73
1581 1813 0.719465 CCCGCACTGTTAACATCGTC 59.281 55.000 9.13 0.00 0.00 4.20
1582 1814 0.365523 CCGCACTGTTAACATCGTCG 59.634 55.000 9.13 10.10 0.00 5.12
1583 1815 0.246757 CGCACTGTTAACATCGTCGC 60.247 55.000 9.13 9.70 0.00 5.19
1588 1820 2.095847 GTTAACATCGTCGCCGGCA 61.096 57.895 28.98 11.20 33.95 5.69
1590 1822 1.149361 TTAACATCGTCGCCGGCATC 61.149 55.000 28.98 17.31 33.95 3.91
1592 1824 2.586079 CATCGTCGCCGGCATCTT 60.586 61.111 28.98 3.33 33.95 2.40
1595 1827 3.853330 CGTCGCCGGCATCTTGTG 61.853 66.667 28.98 8.23 0.00 3.33
1620 1852 3.706373 AGGGGCTGCTACGTGGTG 61.706 66.667 0.00 0.00 0.00 4.17
1687 1919 0.319728 CAGGATCTATGGCGTGGAGG 59.680 60.000 0.00 0.00 0.00 4.30
1689 1921 0.318762 GGATCTATGGCGTGGAGGAC 59.681 60.000 0.00 0.00 0.00 3.85
1721 1953 1.888018 TCGTCGGCGATTTCTTCCT 59.112 52.632 14.79 0.00 42.81 3.36
1722 1954 0.457853 TCGTCGGCGATTTCTTCCTG 60.458 55.000 14.79 0.00 42.81 3.86
1735 1967 3.659089 TTCCTGCTCGCGCCTTACC 62.659 63.158 0.00 0.00 34.43 2.85
1764 1997 8.807948 AGGTACATATGCTTGTTCAGTTTTAT 57.192 30.769 1.58 0.00 0.00 1.40
1795 2031 9.582648 AACAAGACCACATTTAGGTTAGTTAAT 57.417 29.630 0.00 0.00 40.09 1.40
1829 2065 4.141711 TGGACATACCTTGATCTTGCCTAC 60.142 45.833 0.00 0.00 39.86 3.18
1883 2119 3.320541 CCAAACCAGTGTATGCTTCCAAA 59.679 43.478 0.00 0.00 0.00 3.28
1884 2120 4.202202 CCAAACCAGTGTATGCTTCCAAAA 60.202 41.667 0.00 0.00 0.00 2.44
1905 2188 7.382218 CCAAAATTCACAAATCTGTCTGTAACC 59.618 37.037 0.00 0.00 31.64 2.85
1939 2223 7.838771 ATCAATCTTTCTGCAAAATTAAGCC 57.161 32.000 0.00 0.00 0.00 4.35
1959 2243 2.046023 CAGGCGCACCAGGATTCA 60.046 61.111 10.83 0.00 39.06 2.57
1975 2259 4.107622 GGATTCAACCTGCATCAATTTCG 58.892 43.478 0.00 0.00 0.00 3.46
1976 2260 4.380867 GGATTCAACCTGCATCAATTTCGT 60.381 41.667 0.00 0.00 0.00 3.85
1977 2261 3.557577 TCAACCTGCATCAATTTCGTG 57.442 42.857 0.00 0.00 0.00 4.35
1994 2278 4.601621 TCGTGAGAAGTCGAGAACTATG 57.398 45.455 0.00 0.00 37.17 2.23
1997 2281 4.416620 GTGAGAAGTCGAGAACTATGTGG 58.583 47.826 0.00 0.00 37.17 4.17
1999 2283 4.396478 TGAGAAGTCGAGAACTATGTGGAG 59.604 45.833 0.00 0.00 37.17 3.86
2000 2284 3.129638 AGAAGTCGAGAACTATGTGGAGC 59.870 47.826 0.00 0.00 37.17 4.70
2001 2285 2.447443 AGTCGAGAACTATGTGGAGCA 58.553 47.619 0.00 0.00 36.07 4.26
2002 2286 2.826128 AGTCGAGAACTATGTGGAGCAA 59.174 45.455 0.00 0.00 36.07 3.91
2003 2287 3.258372 AGTCGAGAACTATGTGGAGCAAA 59.742 43.478 0.00 0.00 36.07 3.68
2004 2288 3.994392 GTCGAGAACTATGTGGAGCAAAA 59.006 43.478 0.00 0.00 0.00 2.44
2005 2289 4.631813 GTCGAGAACTATGTGGAGCAAAAT 59.368 41.667 0.00 0.00 0.00 1.82
2006 2290 5.122396 GTCGAGAACTATGTGGAGCAAAATT 59.878 40.000 0.00 0.00 0.00 1.82
2007 2291 5.351465 TCGAGAACTATGTGGAGCAAAATTC 59.649 40.000 0.00 0.00 0.00 2.17
2008 2292 5.122239 CGAGAACTATGTGGAGCAAAATTCA 59.878 40.000 0.00 0.00 0.00 2.57
2009 2293 6.506500 AGAACTATGTGGAGCAAAATTCAG 57.493 37.500 0.00 0.00 0.00 3.02
2010 2294 5.416952 AGAACTATGTGGAGCAAAATTCAGG 59.583 40.000 0.00 0.00 0.00 3.86
2011 2295 4.019174 ACTATGTGGAGCAAAATTCAGGG 58.981 43.478 0.00 0.00 0.00 4.45
2012 2296 2.673775 TGTGGAGCAAAATTCAGGGA 57.326 45.000 0.00 0.00 0.00 4.20
2013 2297 2.238521 TGTGGAGCAAAATTCAGGGAC 58.761 47.619 0.00 0.00 0.00 4.46
2014 2298 1.546029 GTGGAGCAAAATTCAGGGACC 59.454 52.381 0.00 0.00 0.00 4.46
2015 2299 1.428912 TGGAGCAAAATTCAGGGACCT 59.571 47.619 0.00 0.00 0.00 3.85
2016 2300 2.095461 GGAGCAAAATTCAGGGACCTC 58.905 52.381 0.00 0.00 0.00 3.85
2017 2301 2.555227 GGAGCAAAATTCAGGGACCTCA 60.555 50.000 0.00 0.00 0.00 3.86
2018 2302 2.751806 GAGCAAAATTCAGGGACCTCAG 59.248 50.000 0.00 0.00 0.00 3.35
2019 2303 2.108952 AGCAAAATTCAGGGACCTCAGT 59.891 45.455 0.00 0.00 0.00 3.41
2020 2304 2.893489 GCAAAATTCAGGGACCTCAGTT 59.107 45.455 0.00 0.00 0.00 3.16
2021 2305 4.079253 GCAAAATTCAGGGACCTCAGTTA 58.921 43.478 0.00 0.00 0.00 2.24
2022 2306 4.156739 GCAAAATTCAGGGACCTCAGTTAG 59.843 45.833 0.00 0.00 0.00 2.34
2023 2307 5.316987 CAAAATTCAGGGACCTCAGTTAGT 58.683 41.667 0.00 0.00 0.00 2.24
2024 2308 6.472887 CAAAATTCAGGGACCTCAGTTAGTA 58.527 40.000 0.00 0.00 0.00 1.82
2025 2309 6.697641 AAATTCAGGGACCTCAGTTAGTAA 57.302 37.500 0.00 0.00 0.00 2.24
2026 2310 5.678955 ATTCAGGGACCTCAGTTAGTAAC 57.321 43.478 4.78 4.78 0.00 2.50
2027 2311 3.438183 TCAGGGACCTCAGTTAGTAACC 58.562 50.000 9.46 0.00 0.00 2.85
2028 2312 3.170717 CAGGGACCTCAGTTAGTAACCA 58.829 50.000 9.46 0.00 0.00 3.67
2029 2313 3.581332 CAGGGACCTCAGTTAGTAACCAA 59.419 47.826 9.46 0.00 0.00 3.67
2030 2314 3.581770 AGGGACCTCAGTTAGTAACCAAC 59.418 47.826 9.46 0.00 0.00 3.77
2031 2315 3.581770 GGGACCTCAGTTAGTAACCAACT 59.418 47.826 9.46 0.00 42.62 3.16
2032 2316 4.041321 GGGACCTCAGTTAGTAACCAACTT 59.959 45.833 9.46 0.00 39.80 2.66
2033 2317 5.455755 GGGACCTCAGTTAGTAACCAACTTT 60.456 44.000 9.46 0.00 39.80 2.66
2034 2318 5.469084 GGACCTCAGTTAGTAACCAACTTTG 59.531 44.000 9.46 0.83 39.80 2.77
2035 2319 5.997843 ACCTCAGTTAGTAACCAACTTTGT 58.002 37.500 9.46 0.00 39.80 2.83
2036 2320 5.820947 ACCTCAGTTAGTAACCAACTTTGTG 59.179 40.000 9.46 0.00 39.80 3.33
2037 2321 5.820947 CCTCAGTTAGTAACCAACTTTGTGT 59.179 40.000 9.46 0.00 39.80 3.72
2038 2322 6.018180 CCTCAGTTAGTAACCAACTTTGTGTC 60.018 42.308 9.46 0.00 39.80 3.67
2049 2333 6.779860 ACCAACTTTGTGTCTCCAGTATATT 58.220 36.000 0.00 0.00 0.00 1.28
2066 2350 7.116948 CCAGTATATTGGAATCTGTAGAAAGCG 59.883 40.741 8.57 0.00 40.87 4.68
2077 2361 9.346725 GAATCTGTAGAAAGCGATTTTGATTTT 57.653 29.630 0.00 0.00 0.00 1.82
2108 2392 9.616156 TTTTAAATCTACAGTTGTTGGTAGTGA 57.384 29.630 0.00 0.00 38.46 3.41
2111 2395 2.256117 ACAGTTGTTGGTAGTGAGGC 57.744 50.000 0.00 0.00 0.00 4.70
2116 2400 2.543777 TGTTGGTAGTGAGGCACTTC 57.456 50.000 5.31 0.60 42.59 3.01
2120 2404 4.246458 GTTGGTAGTGAGGCACTTCTTAG 58.754 47.826 5.31 0.00 42.59 2.18
2123 2407 4.021368 TGGTAGTGAGGCACTTCTTAGTTC 60.021 45.833 5.31 0.00 42.59 3.01
2127 2411 5.625150 AGTGAGGCACTTCTTAGTTCAATT 58.375 37.500 0.00 0.00 42.59 2.32
2130 2414 7.389053 AGTGAGGCACTTCTTAGTTCAATTTAG 59.611 37.037 0.00 0.00 42.59 1.85
2133 2417 9.384764 GAGGCACTTCTTAGTTCAATTTAGTAT 57.615 33.333 0.00 0.00 41.55 2.12
2183 2695 8.597662 AGTGTTATAAACATTACAACTGACGT 57.402 30.769 0.00 0.00 44.35 4.34
2186 2698 8.705134 TGTTATAAACATTACAACTGACGTCTG 58.295 33.333 19.56 19.56 36.25 3.51
2188 2700 9.911138 TTATAAACATTACAACTGACGTCTGTA 57.089 29.630 25.68 18.07 0.00 2.74
2189 2701 6.764877 AAACATTACAACTGACGTCTGTAG 57.235 37.500 25.68 13.51 0.00 2.74
2190 2702 5.700722 ACATTACAACTGACGTCTGTAGA 57.299 39.130 25.68 12.78 0.00 2.59
2191 2703 6.080648 ACATTACAACTGACGTCTGTAGAA 57.919 37.500 25.68 19.30 0.00 2.10
2192 2704 6.150318 ACATTACAACTGACGTCTGTAGAAG 58.850 40.000 25.68 17.96 0.00 2.85
2193 2705 5.762825 TTACAACTGACGTCTGTAGAAGT 57.237 39.130 25.68 21.63 39.38 3.01
2199 2735 0.962489 ACGTCTGTAGAAGTGCTGCT 59.038 50.000 0.00 0.00 35.52 4.24
2206 2742 1.462670 GTAGAAGTGCTGCTCAAGTGC 59.537 52.381 0.00 0.00 0.00 4.40
2211 2747 1.601759 TGCTGCTCAAGTGCCCTTC 60.602 57.895 0.00 0.00 0.00 3.46
2243 2780 6.374417 ACTTCATTATCACCACCAGTACTT 57.626 37.500 0.00 0.00 0.00 2.24
2256 2823 0.037232 AGTACTTCTTCACCAGCCGC 60.037 55.000 0.00 0.00 0.00 6.53
2276 2843 2.616510 GCACATTGCTGGTAGGAGTTCT 60.617 50.000 0.00 0.00 40.96 3.01
2279 2846 5.431765 CACATTGCTGGTAGGAGTTCTAAT 58.568 41.667 0.00 0.00 0.00 1.73
2280 2847 5.882557 CACATTGCTGGTAGGAGTTCTAATT 59.117 40.000 0.00 0.00 0.00 1.40
2281 2848 6.037610 CACATTGCTGGTAGGAGTTCTAATTC 59.962 42.308 0.00 0.00 0.00 2.17
2282 2849 4.755266 TGCTGGTAGGAGTTCTAATTCC 57.245 45.455 0.00 0.00 35.22 3.01
2283 2850 4.101114 TGCTGGTAGGAGTTCTAATTCCA 58.899 43.478 6.97 0.00 37.28 3.53
2284 2851 4.534500 TGCTGGTAGGAGTTCTAATTCCAA 59.466 41.667 6.97 0.00 37.28 3.53
2285 2852 5.191722 TGCTGGTAGGAGTTCTAATTCCAAT 59.808 40.000 6.97 0.00 37.28 3.16
2288 2855 7.939588 GCTGGTAGGAGTTCTAATTCCAATAAT 59.060 37.037 6.97 0.00 37.28 1.28
2296 2863 8.910351 AGTTCTAATTCCAATAATCTAGGCAC 57.090 34.615 0.00 0.00 0.00 5.01
2304 2871 4.262635 CCAATAATCTAGGCACGTCCTCAT 60.263 45.833 9.44 2.41 43.20 2.90
2305 2872 4.792521 ATAATCTAGGCACGTCCTCATC 57.207 45.455 9.44 0.00 43.20 2.92
2311 2878 0.734889 GGCACGTCCTCATCCATTTG 59.265 55.000 0.00 0.00 0.00 2.32
2312 2879 1.453155 GCACGTCCTCATCCATTTGT 58.547 50.000 0.00 0.00 0.00 2.83
2313 2880 1.131126 GCACGTCCTCATCCATTTGTG 59.869 52.381 0.00 0.00 0.00 3.33
2314 2881 2.698803 CACGTCCTCATCCATTTGTGA 58.301 47.619 0.00 0.00 0.00 3.58
2315 2882 3.273434 CACGTCCTCATCCATTTGTGAT 58.727 45.455 0.00 0.00 0.00 3.06
2316 2883 3.064408 CACGTCCTCATCCATTTGTGATG 59.936 47.826 0.00 0.00 40.77 3.07
2317 2884 3.273434 CGTCCTCATCCATTTGTGATGT 58.727 45.455 0.00 0.00 40.38 3.06
2318 2885 4.081142 ACGTCCTCATCCATTTGTGATGTA 60.081 41.667 0.00 0.00 40.38 2.29
2320 2887 5.353956 CGTCCTCATCCATTTGTGATGTAAA 59.646 40.000 0.00 0.00 40.38 2.01
2323 2890 7.067372 GTCCTCATCCATTTGTGATGTAAATCA 59.933 37.037 0.00 0.00 40.38 2.57
2331 2898 6.558771 TTTGTGATGTAAATCACCTCACTG 57.441 37.500 21.01 0.00 46.89 3.66
2333 2900 5.620206 TGTGATGTAAATCACCTCACTGTT 58.380 37.500 21.01 0.00 46.89 3.16
2334 2901 5.700832 TGTGATGTAAATCACCTCACTGTTC 59.299 40.000 21.01 0.00 46.89 3.18
2338 2905 7.448161 TGATGTAAATCACCTCACTGTTCATTT 59.552 33.333 0.00 0.00 28.06 2.32
2357 3075 7.002250 TCATTTTAATTTGATGTTGAGGCCA 57.998 32.000 5.01 0.00 0.00 5.36
2419 3138 1.612950 TGTCATGTCAACACCATTGGC 59.387 47.619 1.54 0.00 0.00 4.52
2426 3145 5.637006 TGTCAACACCATTGGCTAATAAC 57.363 39.130 1.54 0.00 0.00 1.89
2427 3146 4.461081 TGTCAACACCATTGGCTAATAACC 59.539 41.667 1.54 0.00 0.00 2.85
2428 3147 3.692101 TCAACACCATTGGCTAATAACCG 59.308 43.478 1.54 0.00 0.00 4.44
2429 3148 3.637911 ACACCATTGGCTAATAACCGA 57.362 42.857 1.54 0.00 0.00 4.69
2431 3150 4.532834 ACACCATTGGCTAATAACCGAAT 58.467 39.130 1.54 0.00 0.00 3.34
2438 3160 7.606456 CCATTGGCTAATAACCGAATAGTACAT 59.394 37.037 0.00 0.00 0.00 2.29
2439 3161 8.656849 CATTGGCTAATAACCGAATAGTACATC 58.343 37.037 0.00 0.00 0.00 3.06
2442 3164 7.038587 TGGCTAATAACCGAATAGTACATCCAT 60.039 37.037 0.00 0.00 0.00 3.41
2461 3188 9.284968 ACATCCATAATATTTAGGTAAGTGCAC 57.715 33.333 9.40 9.40 0.00 4.57
2470 3197 5.765576 TTAGGTAAGTGCACCATTTAGGA 57.234 39.130 14.63 0.00 41.40 2.94
2471 3198 3.951663 AGGTAAGTGCACCATTTAGGAC 58.048 45.455 14.63 0.00 41.40 3.85
2472 3199 3.587506 AGGTAAGTGCACCATTTAGGACT 59.412 43.478 14.63 2.35 41.40 3.85
2479 3211 3.455910 TGCACCATTTAGGACTATCTGCT 59.544 43.478 0.00 0.00 41.22 4.24
2481 3213 4.274459 GCACCATTTAGGACTATCTGCTTG 59.726 45.833 0.00 0.00 41.22 4.01
2483 3215 5.525378 CACCATTTAGGACTATCTGCTTGTC 59.475 44.000 0.00 0.00 41.22 3.18
2487 3219 2.826488 AGGACTATCTGCTTGTCTGGT 58.174 47.619 0.00 0.00 31.26 4.00
2492 3224 6.069963 AGGACTATCTGCTTGTCTGGTTATTT 60.070 38.462 0.00 0.00 31.26 1.40
2495 3227 9.331282 GACTATCTGCTTGTCTGGTTATTTATT 57.669 33.333 0.00 0.00 0.00 1.40
2496 3228 9.686683 ACTATCTGCTTGTCTGGTTATTTATTT 57.313 29.630 0.00 0.00 0.00 1.40
2497 3229 9.941664 CTATCTGCTTGTCTGGTTATTTATTTG 57.058 33.333 0.00 0.00 0.00 2.32
2498 3230 7.994425 TCTGCTTGTCTGGTTATTTATTTGA 57.006 32.000 0.00 0.00 0.00 2.69
2499 3231 8.402798 TCTGCTTGTCTGGTTATTTATTTGAA 57.597 30.769 0.00 0.00 0.00 2.69
2500 3232 8.296713 TCTGCTTGTCTGGTTATTTATTTGAAC 58.703 33.333 0.00 0.00 0.00 3.18
2501 3233 7.946207 TGCTTGTCTGGTTATTTATTTGAACA 58.054 30.769 0.00 0.00 0.00 3.18
2502 3234 8.081633 TGCTTGTCTGGTTATTTATTTGAACAG 58.918 33.333 0.00 0.00 0.00 3.16
2503 3235 8.296713 GCTTGTCTGGTTATTTATTTGAACAGA 58.703 33.333 0.00 0.00 0.00 3.41
2519 3251 9.933723 ATTTGAACAGATTATTGCTTTTAGCTT 57.066 25.926 0.00 0.00 42.97 3.74
2520 3252 9.762933 TTTGAACAGATTATTGCTTTTAGCTTT 57.237 25.926 0.00 0.00 42.97 3.51
2555 3287 6.209192 TGTTGTCAGTCCATCTGCAAATAAAT 59.791 34.615 0.00 0.00 43.32 1.40
2562 3294 8.653338 CAGTCCATCTGCAAATAAATCAAAAAG 58.347 33.333 0.00 0.00 37.36 2.27
2566 3299 8.120465 CCATCTGCAAATAAATCAAAAAGCATC 58.880 33.333 0.00 0.00 0.00 3.91
2582 3315 4.755266 AGCATCGTATACAAAGGGTCTT 57.245 40.909 3.32 0.00 0.00 3.01
2583 3316 4.694339 AGCATCGTATACAAAGGGTCTTC 58.306 43.478 3.32 0.00 0.00 2.87
2600 3333 3.811702 CCTGTCTCAGGCCTTGGA 58.188 61.111 0.00 0.30 45.13 3.53
2602 3335 1.079543 CTGTCTCAGGCCTTGGACG 60.080 63.158 22.37 15.95 32.74 4.79
2613 3346 2.684001 CCTTGGACGGCATAGTAACA 57.316 50.000 0.00 0.00 0.00 2.41
2691 3432 6.985653 TCCTGTCAACCCATTTTAATTGAA 57.014 33.333 0.00 0.00 33.09 2.69
2692 3433 6.754193 TCCTGTCAACCCATTTTAATTGAAC 58.246 36.000 0.00 0.00 33.09 3.18
2715 3456 0.877071 CCTGTAGCAAGCAACACTGG 59.123 55.000 0.00 0.00 0.00 4.00
2828 3569 9.236006 GCATAAAACATCATGAGGGATAACTAT 57.764 33.333 12.66 0.00 0.00 2.12
2909 3652 8.766994 AGTAGCCATTTAATGATATGGTTTGT 57.233 30.769 6.50 0.00 42.67 2.83
2970 3713 4.133373 CACCATGGGGAGGGCCAG 62.133 72.222 18.09 0.00 38.05 4.85
3029 3772 1.077716 GCCAAAGGACGGGTATGCT 60.078 57.895 0.00 0.00 0.00 3.79
3049 3795 5.199723 TGCTGCTCACCATATTCCAAATTA 58.800 37.500 0.00 0.00 0.00 1.40
3063 3810 7.881775 ATTCCAAATTATCCTTACACCAGAC 57.118 36.000 0.00 0.00 0.00 3.51
3127 3874 0.098376 GCTTCTTGGAAGCGAGCATG 59.902 55.000 14.99 0.00 35.99 4.06
3134 3881 1.094073 GGAAGCGAGCATGCTGATGT 61.094 55.000 28.27 7.67 46.60 3.06
3136 3883 2.141517 GAAGCGAGCATGCTGATGTAT 58.858 47.619 28.27 5.95 46.60 2.29
3181 3928 5.643777 ACAATTGTAGCCTTGTAGCTGTTAG 59.356 40.000 9.97 0.00 44.67 2.34
3189 3936 4.437239 CCTTGTAGCTGTTAGTCATGGAG 58.563 47.826 0.00 0.00 0.00 3.86
3191 3938 3.441101 TGTAGCTGTTAGTCATGGAGGT 58.559 45.455 0.00 0.00 0.00 3.85
3267 4014 2.554344 GCACTTAGGGGTGTTGGATGAA 60.554 50.000 0.00 0.00 39.21 2.57
3276 4023 4.962362 GGGGTGTTGGATGAAGGATATTTT 59.038 41.667 0.00 0.00 0.00 1.82
3648 4406 8.664079 AGCATTTTACAACTATCATCCTAGGAT 58.336 33.333 19.18 19.18 34.81 3.24
3718 4476 5.183904 ACAGCACAGATTCAAAGGAATTACC 59.816 40.000 0.00 0.00 43.69 2.85
3755 4608 1.003003 TGGCACGATGATCCAGTTCAA 59.997 47.619 0.00 0.00 0.00 2.69
3769 4622 5.419542 TCCAGTTCAATATCGAAGTTGAGG 58.580 41.667 13.37 12.04 35.91 3.86
3994 4848 1.956477 CGAATTGGGTTCCATGGGATC 59.044 52.381 13.02 2.25 31.53 3.36
4051 4905 1.879575 ATCTCCTGGTTCCCATTCGA 58.120 50.000 0.00 0.00 30.82 3.71
4093 4947 6.778821 TGGGAAATGTCTACTGAAATCTCAA 58.221 36.000 0.00 0.00 0.00 3.02
4197 5051 8.686334 TGGAATCAAAATCTTTAGTTGGATAGC 58.314 33.333 0.00 0.00 0.00 2.97
4217 5071 1.623311 CTACCATATGGGGACGCATGA 59.377 52.381 25.55 0.00 42.91 3.07
4284 5141 9.945633 GATAGGAGTAGGAATAGGAATAGGAAT 57.054 37.037 0.00 0.00 0.00 3.01
4287 5144 8.348354 AGGAGTAGGAATAGGAATAGGAATAGG 58.652 40.741 0.00 0.00 0.00 2.57
4288 5145 8.345306 GGAGTAGGAATAGGAATAGGAATAGGA 58.655 40.741 0.00 0.00 0.00 2.94
4289 5146 9.771140 GAGTAGGAATAGGAATAGGAATAGGAA 57.229 37.037 0.00 0.00 0.00 3.36
4318 5175 1.470098 CAAATGGAAGAAGAGGCACCG 59.530 52.381 0.00 0.00 0.00 4.94
4338 5195 3.243771 CCGGTGGGAACATCTATACTGAC 60.244 52.174 0.00 0.00 46.14 3.51
4354 5211 1.129811 CTGACGAATTAAACGTGGCCC 59.870 52.381 14.02 0.00 43.97 5.80
4407 5264 4.024977 GGACATTTCACACCAATTTGTTGC 60.025 41.667 0.00 0.00 0.00 4.17
4425 5282 0.106015 GCCAGCCAAGGAACCCATAT 60.106 55.000 0.00 0.00 0.00 1.78
4445 5302 6.127366 CCATATTGGTAGCATGTTGTTTCCTT 60.127 38.462 0.00 0.00 31.35 3.36
4453 5310 3.057596 GCATGTTGTTTCCTTTCGGATCA 60.058 43.478 0.00 0.00 39.58 2.92
4484 5341 0.042188 CGCAGTGTTGTTTCCTGTCG 60.042 55.000 0.00 0.00 0.00 4.35
4489 5346 1.459592 GTGTTGTTTCCTGTCGGATCG 59.540 52.381 0.00 0.00 39.58 3.69
4490 5347 0.442699 GTTGTTTCCTGTCGGATCGC 59.557 55.000 0.00 0.00 39.58 4.58
4491 5348 1.011968 TTGTTTCCTGTCGGATCGCG 61.012 55.000 0.00 0.00 39.58 5.87
4648 5505 1.981256 TGACTTGCTCTTTCCCAACC 58.019 50.000 0.00 0.00 0.00 3.77
4663 5520 2.816087 CCCAACCTGTGACAAGATGAAG 59.184 50.000 0.00 0.00 0.00 3.02
4666 5523 4.214971 CCAACCTGTGACAAGATGAAGAAG 59.785 45.833 0.00 0.00 0.00 2.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 3.743396 ACAGAGCTTCTTAGTTTCGCAAG 59.257 43.478 0.00 0.00 0.00 4.01
24 25 3.494626 CACAGAGCTTCTTAGTTTCGCAA 59.505 43.478 0.00 0.00 0.00 4.85
25 26 3.059884 CACAGAGCTTCTTAGTTTCGCA 58.940 45.455 0.00 0.00 0.00 5.10
27 28 6.326375 AGATACACAGAGCTTCTTAGTTTCG 58.674 40.000 0.00 0.00 0.00 3.46
28 29 8.032451 AGAAGATACACAGAGCTTCTTAGTTTC 58.968 37.037 0.00 0.00 43.15 2.78
29 30 7.816995 CAGAAGATACACAGAGCTTCTTAGTTT 59.183 37.037 0.00 0.00 43.15 2.66
44 45 7.891183 TTCTAAGTTTCTGCAGAAGATACAC 57.109 36.000 27.02 21.54 38.82 2.90
86 87 5.634118 TCCAGAGATCAACAACAGGATTTT 58.366 37.500 0.00 0.00 0.00 1.82
87 88 5.246981 TCCAGAGATCAACAACAGGATTT 57.753 39.130 0.00 0.00 0.00 2.17
89 90 3.370315 GCTCCAGAGATCAACAACAGGAT 60.370 47.826 0.00 0.00 0.00 3.24
90 91 2.027745 GCTCCAGAGATCAACAACAGGA 60.028 50.000 0.00 0.00 0.00 3.86
91 92 2.354259 GCTCCAGAGATCAACAACAGG 58.646 52.381 0.00 0.00 0.00 4.00
92 93 2.354259 GGCTCCAGAGATCAACAACAG 58.646 52.381 0.00 0.00 0.00 3.16
93 94 1.338105 CGGCTCCAGAGATCAACAACA 60.338 52.381 0.00 0.00 0.00 3.33
94 95 1.066858 TCGGCTCCAGAGATCAACAAC 60.067 52.381 0.00 0.00 0.00 3.32
95 96 1.266178 TCGGCTCCAGAGATCAACAA 58.734 50.000 0.00 0.00 0.00 2.83
96 97 1.489481 ATCGGCTCCAGAGATCAACA 58.511 50.000 0.00 0.00 0.00 3.33
97 98 2.208431 CAATCGGCTCCAGAGATCAAC 58.792 52.381 0.00 0.00 0.00 3.18
101 102 1.449353 GGCAATCGGCTCCAGAGAT 59.551 57.895 0.00 0.00 44.01 2.75
112 113 2.160221 GCAATTGGTGCGGCAATCG 61.160 57.895 3.23 0.00 45.10 3.34
134 135 0.962489 TTGGTTTACATGGCAACCGG 59.038 50.000 18.53 0.00 44.88 5.28
139 140 3.820467 CTGAGTTCTTGGTTTACATGGCA 59.180 43.478 0.00 0.00 0.00 4.92
143 144 4.098914 TGGCTGAGTTCTTGGTTTACAT 57.901 40.909 0.00 0.00 0.00 2.29
209 210 4.664851 CGACGCACAACTTAAGACTTTTTC 59.335 41.667 10.09 0.00 0.00 2.29
213 214 3.088194 TCGACGCACAACTTAAGACTT 57.912 42.857 10.09 0.00 0.00 3.01
215 216 2.409879 GCTTCGACGCACAACTTAAGAC 60.410 50.000 10.09 0.00 0.00 3.01
216 217 1.790623 GCTTCGACGCACAACTTAAGA 59.209 47.619 10.09 0.00 0.00 2.10
217 218 1.792949 AGCTTCGACGCACAACTTAAG 59.207 47.619 16.85 0.00 0.00 1.85
218 219 1.525197 CAGCTTCGACGCACAACTTAA 59.475 47.619 16.85 0.00 0.00 1.85
219 220 1.136690 CAGCTTCGACGCACAACTTA 58.863 50.000 16.85 0.00 0.00 2.24
220 221 0.810031 ACAGCTTCGACGCACAACTT 60.810 50.000 16.85 0.00 0.00 2.66
228 233 2.863739 TCACATCTTACAGCTTCGACG 58.136 47.619 0.00 0.00 0.00 5.12
264 269 2.057316 CACAAATGCGGCGAAAATTGA 58.943 42.857 19.77 0.00 0.00 2.57
266 271 1.000283 TCCACAAATGCGGCGAAAATT 60.000 42.857 12.98 3.84 0.00 1.82
276 281 1.334960 CCACACGAGTTCCACAAATGC 60.335 52.381 0.00 0.00 0.00 3.56
290 295 2.702751 TTACAGCACGGTCCCACACG 62.703 60.000 0.00 0.00 0.00 4.49
316 504 0.510359 GCTCAACTGAGAGTGCAACG 59.490 55.000 10.95 0.00 44.74 4.10
329 517 3.826236 TGACAGTAGTACGAGCTCAAC 57.174 47.619 15.40 11.21 0.00 3.18
336 524 7.539710 GTCATGTTACAATTGACAGTAGTACGA 59.460 37.037 13.59 0.00 39.59 3.43
337 525 7.541091 AGTCATGTTACAATTGACAGTAGTACG 59.459 37.037 17.78 0.00 41.71 3.67
338 526 8.758633 AGTCATGTTACAATTGACAGTAGTAC 57.241 34.615 17.78 0.00 41.71 2.73
339 527 9.850628 GTAGTCATGTTACAATTGACAGTAGTA 57.149 33.333 17.78 4.26 41.71 1.82
340 528 8.364894 TGTAGTCATGTTACAATTGACAGTAGT 58.635 33.333 17.78 5.13 41.71 2.73
341 529 8.757164 TGTAGTCATGTTACAATTGACAGTAG 57.243 34.615 17.78 2.22 41.71 2.57
365 553 6.030379 ACGCACACAAACAATTTAATGTTG 57.970 33.333 0.00 0.00 42.49 3.33
386 575 3.120683 ACACATGCACTGTTTATCGAACG 60.121 43.478 0.00 0.00 41.29 3.95
390 579 5.034554 AGAAACACATGCACTGTTTATCG 57.965 39.130 19.42 4.08 41.01 2.92
392 581 4.826733 TGGAGAAACACATGCACTGTTTAT 59.173 37.500 19.42 17.41 41.01 1.40
404 593 9.256228 ACTAGTAGATTCTTATGGAGAAACACA 57.744 33.333 3.59 0.00 46.90 3.72
427 616 8.523658 CATGGCTATCAGCAATACTACTTACTA 58.476 37.037 0.00 0.00 44.75 1.82
428 617 6.978674 TGGCTATCAGCAATACTACTTACT 57.021 37.500 0.00 0.00 44.75 2.24
429 618 7.155328 ACATGGCTATCAGCAATACTACTTAC 58.845 38.462 0.00 0.00 44.75 2.34
430 619 7.303182 ACATGGCTATCAGCAATACTACTTA 57.697 36.000 0.00 0.00 44.75 2.24
431 620 6.179906 ACATGGCTATCAGCAATACTACTT 57.820 37.500 0.00 0.00 44.75 2.24
432 621 5.815233 ACATGGCTATCAGCAATACTACT 57.185 39.130 0.00 0.00 44.75 2.57
433 622 6.692486 ACTACATGGCTATCAGCAATACTAC 58.308 40.000 0.00 0.00 44.75 2.73
434 623 6.918067 ACTACATGGCTATCAGCAATACTA 57.082 37.500 0.00 0.00 44.75 1.82
440 629 3.552890 CGCTAACTACATGGCTATCAGCA 60.553 47.826 0.00 0.00 44.75 4.41
446 635 0.031585 CGGCGCTAACTACATGGCTA 59.968 55.000 7.64 0.00 0.00 3.93
448 637 0.808453 TTCGGCGCTAACTACATGGC 60.808 55.000 7.64 0.00 0.00 4.40
452 641 2.063266 CAACTTTCGGCGCTAACTACA 58.937 47.619 7.64 0.00 0.00 2.74
461 650 1.798813 AGTAGCTTTCAACTTTCGGCG 59.201 47.619 0.00 0.00 0.00 6.46
464 653 3.665190 AGGGAGTAGCTTTCAACTTTCG 58.335 45.455 0.00 0.00 0.00 3.46
479 668 3.830121 AGTATTACGAATCGGAGGGAGT 58.170 45.455 7.80 0.00 0.00 3.85
493 682 8.549338 AACAAACCTAGAGCTTCAAGTATTAC 57.451 34.615 0.00 0.00 0.00 1.89
541 731 9.924650 GACGTTGGTACATATTCCTATAATCTT 57.075 33.333 0.00 0.00 39.30 2.40
551 741 8.662141 ACATGTTTTAGACGTTGGTACATATTC 58.338 33.333 0.00 0.00 39.30 1.75
554 744 6.369340 CCACATGTTTTAGACGTTGGTACATA 59.631 38.462 0.00 0.00 39.30 2.29
557 747 4.512571 ACCACATGTTTTAGACGTTGGTAC 59.487 41.667 0.00 0.00 37.13 3.34
560 750 4.992319 TCTACCACATGTTTTAGACGTTGG 59.008 41.667 0.00 0.00 34.41 3.77
625 845 9.550811 GTTAATTACTTACTCCGTTCCAAAATG 57.449 33.333 0.00 0.00 0.00 2.32
656 876 1.305219 TGCAACCTTATCGGCAGCAC 61.305 55.000 0.00 0.00 39.89 4.40
662 882 2.422597 TGTCAACTGCAACCTTATCGG 58.577 47.619 0.00 0.00 39.35 4.18
664 884 3.253188 TGCTTGTCAACTGCAACCTTATC 59.747 43.478 0.00 0.00 33.48 1.75
681 901 4.949856 AGGGGAAGTATAACATTGTGCTTG 59.050 41.667 0.00 0.00 0.00 4.01
687 907 8.575649 AAAGTTACAGGGGAAGTATAACATTG 57.424 34.615 0.00 0.00 0.00 2.82
688 908 9.596308 AAAAAGTTACAGGGGAAGTATAACATT 57.404 29.630 0.00 0.00 0.00 2.71
698 918 8.209802 TCTACTCATAAAAAGTTACAGGGGAA 57.790 34.615 0.00 0.00 0.00 3.97
699 919 7.801893 TCTACTCATAAAAAGTTACAGGGGA 57.198 36.000 0.00 0.00 0.00 4.81
700 920 7.881232 TGTTCTACTCATAAAAAGTTACAGGGG 59.119 37.037 0.00 0.00 0.00 4.79
701 921 8.842358 TGTTCTACTCATAAAAAGTTACAGGG 57.158 34.615 0.00 0.00 0.00 4.45
702 922 9.490379 ACTGTTCTACTCATAAAAAGTTACAGG 57.510 33.333 0.00 0.00 35.73 4.00
716 936 9.639601 CATCACTGTTAATTACTGTTCTACTCA 57.360 33.333 0.00 0.00 36.87 3.41
717 937 8.596380 GCATCACTGTTAATTACTGTTCTACTC 58.404 37.037 0.00 0.00 36.87 2.59
718 938 8.314751 AGCATCACTGTTAATTACTGTTCTACT 58.685 33.333 0.00 0.00 36.87 2.57
719 939 8.480643 AGCATCACTGTTAATTACTGTTCTAC 57.519 34.615 0.00 0.00 36.87 2.59
789 1009 3.436496 GACAGGCAGACTCGTTGTATAC 58.564 50.000 0.00 0.00 0.00 1.47
790 1010 2.426024 GGACAGGCAGACTCGTTGTATA 59.574 50.000 0.00 0.00 0.00 1.47
791 1011 1.204941 GGACAGGCAGACTCGTTGTAT 59.795 52.381 0.00 0.00 0.00 2.29
792 1012 0.601558 GGACAGGCAGACTCGTTGTA 59.398 55.000 0.00 0.00 0.00 2.41
794 1014 1.734477 CGGACAGGCAGACTCGTTG 60.734 63.158 0.00 0.00 0.00 4.10
795 1015 2.143594 GACGGACAGGCAGACTCGTT 62.144 60.000 0.00 0.00 0.00 3.85
797 1017 2.179517 GACGGACAGGCAGACTCG 59.820 66.667 0.00 0.00 0.00 4.18
798 1018 1.214062 CAGACGGACAGGCAGACTC 59.786 63.158 0.00 0.00 0.00 3.36
802 1022 2.002586 CATAAACAGACGGACAGGCAG 58.997 52.381 0.00 0.00 0.00 4.85
803 1023 1.621317 TCATAAACAGACGGACAGGCA 59.379 47.619 0.00 0.00 0.00 4.75
804 1024 2.380084 TCATAAACAGACGGACAGGC 57.620 50.000 0.00 0.00 0.00 4.85
805 1025 3.659786 TGTTCATAAACAGACGGACAGG 58.340 45.455 0.00 0.00 40.45 4.00
806 1026 5.862924 ATTGTTCATAAACAGACGGACAG 57.137 39.130 0.00 0.00 45.72 3.51
807 1027 5.872617 CCTATTGTTCATAAACAGACGGACA 59.127 40.000 0.00 0.00 45.72 4.02
808 1028 5.220605 GCCTATTGTTCATAAACAGACGGAC 60.221 44.000 0.00 0.00 45.72 4.79
809 1029 4.873827 GCCTATTGTTCATAAACAGACGGA 59.126 41.667 0.00 0.00 45.72 4.69
810 1030 4.260212 CGCCTATTGTTCATAAACAGACGG 60.260 45.833 0.00 0.00 45.72 4.79
811 1031 4.565166 TCGCCTATTGTTCATAAACAGACG 59.435 41.667 0.00 0.00 45.72 4.18
812 1032 6.604735 ATCGCCTATTGTTCATAAACAGAC 57.395 37.500 0.00 0.00 45.72 3.51
813 1033 7.497595 AGTATCGCCTATTGTTCATAAACAGA 58.502 34.615 0.00 0.00 45.72 3.41
814 1034 7.715265 AGTATCGCCTATTGTTCATAAACAG 57.285 36.000 0.00 0.00 45.72 3.16
815 1035 8.500753 AAAGTATCGCCTATTGTTCATAAACA 57.499 30.769 0.00 0.00 43.58 2.83
816 1036 9.783256 AAAAAGTATCGCCTATTGTTCATAAAC 57.217 29.630 0.00 0.00 35.85 2.01
820 1040 9.337396 TCATAAAAAGTATCGCCTATTGTTCAT 57.663 29.630 0.00 0.00 0.00 2.57
821 1041 8.725405 TCATAAAAAGTATCGCCTATTGTTCA 57.275 30.769 0.00 0.00 0.00 3.18
822 1042 8.827677 ACTCATAAAAAGTATCGCCTATTGTTC 58.172 33.333 0.00 0.00 0.00 3.18
823 1043 8.732746 ACTCATAAAAAGTATCGCCTATTGTT 57.267 30.769 0.00 0.00 0.00 2.83
824 1044 9.826574 TTACTCATAAAAAGTATCGCCTATTGT 57.173 29.630 0.00 0.00 0.00 2.71
841 1061 9.263446 ACTTCCCACTGTATAACTTACTCATAA 57.737 33.333 0.00 0.00 0.00 1.90
842 1062 8.834004 ACTTCCCACTGTATAACTTACTCATA 57.166 34.615 0.00 0.00 0.00 2.15
843 1063 7.735326 ACTTCCCACTGTATAACTTACTCAT 57.265 36.000 0.00 0.00 0.00 2.90
844 1064 7.233962 TGAACTTCCCACTGTATAACTTACTCA 59.766 37.037 0.00 0.00 0.00 3.41
845 1065 7.609056 TGAACTTCCCACTGTATAACTTACTC 58.391 38.462 0.00 0.00 0.00 2.59
846 1066 7.549147 TGAACTTCCCACTGTATAACTTACT 57.451 36.000 0.00 0.00 0.00 2.24
847 1067 7.494952 GGATGAACTTCCCACTGTATAACTTAC 59.505 40.741 0.00 0.00 0.00 2.34
848 1068 7.562135 GGATGAACTTCCCACTGTATAACTTA 58.438 38.462 0.00 0.00 0.00 2.24
849 1069 6.415573 GGATGAACTTCCCACTGTATAACTT 58.584 40.000 0.00 0.00 0.00 2.66
850 1070 5.395324 CGGATGAACTTCCCACTGTATAACT 60.395 44.000 0.00 0.00 31.61 2.24
851 1071 4.809426 CGGATGAACTTCCCACTGTATAAC 59.191 45.833 0.00 0.00 31.61 1.89
852 1072 4.682320 GCGGATGAACTTCCCACTGTATAA 60.682 45.833 0.00 0.00 31.61 0.98
853 1073 3.181469 GCGGATGAACTTCCCACTGTATA 60.181 47.826 0.00 0.00 31.61 1.47
854 1074 2.420129 GCGGATGAACTTCCCACTGTAT 60.420 50.000 0.00 0.00 31.61 2.29
855 1075 1.066430 GCGGATGAACTTCCCACTGTA 60.066 52.381 0.00 0.00 31.61 2.74
856 1076 0.321653 GCGGATGAACTTCCCACTGT 60.322 55.000 0.00 0.00 31.61 3.55
857 1077 1.026718 GGCGGATGAACTTCCCACTG 61.027 60.000 0.00 0.00 31.61 3.66
858 1078 1.201429 AGGCGGATGAACTTCCCACT 61.201 55.000 0.00 0.00 31.61 4.00
879 1099 5.860182 CGAAATACAGACGGACAGTAAAAGA 59.140 40.000 0.00 0.00 0.00 2.52
891 1113 5.595993 CAGTAAACACACGAAATACAGACG 58.404 41.667 0.00 0.00 0.00 4.18
914 1136 0.370273 ATTTCGCACGAACGAGATGC 59.630 50.000 4.73 0.00 44.00 3.91
919 1141 2.663808 TCAGTTATTTCGCACGAACGA 58.336 42.857 4.73 0.00 41.04 3.85
933 1155 1.542915 CCGACGGAACTCCTTCAGTTA 59.457 52.381 8.64 0.00 46.10 2.24
935 1157 0.538977 TCCGACGGAACTCCTTCAGT 60.539 55.000 15.79 0.00 37.50 3.41
941 1163 1.153804 GCTCTTCCGACGGAACTCC 60.154 63.158 25.18 11.82 36.71 3.85
964 1186 2.612567 CGCGTGCTTGGCAGGTTAA 61.613 57.895 12.56 0.00 44.79 2.01
1093 1318 0.808755 ATTTTTCGGATGGTGGCGAC 59.191 50.000 0.00 0.00 0.00 5.19
1131 1356 4.796495 GCGGTAAGGCCCCTGTGG 62.796 72.222 0.00 0.00 37.09 4.17
1132 1357 3.976701 CTGCGGTAAGGCCCCTGTG 62.977 68.421 0.00 0.00 0.00 3.66
1133 1358 3.717294 CTGCGGTAAGGCCCCTGT 61.717 66.667 0.00 0.00 0.00 4.00
1134 1359 3.682292 GACTGCGGTAAGGCCCCTG 62.682 68.421 0.00 0.00 0.00 4.45
1143 1368 2.753043 GACGGGGAGACTGCGGTA 60.753 66.667 0.00 0.00 0.00 4.02
1174 1399 3.020237 GCCTCTTGGAGACCGGGAC 62.020 68.421 6.32 0.00 34.57 4.46
1181 1406 1.078214 CATTGCCGCCTCTTGGAGA 60.078 57.895 0.00 0.00 34.95 3.71
1317 1545 4.715523 GCCCAGTACTTGCCCGCA 62.716 66.667 0.00 0.00 0.00 5.69
1341 1569 1.078567 CAGGGAGAAGAGGCTGTGC 60.079 63.158 0.00 0.00 0.00 4.57
1522 1750 3.744719 GAAACGGAAAGGGGCGGC 61.745 66.667 0.00 0.00 0.00 6.53
1523 1751 3.060000 GGAAACGGAAAGGGGCGG 61.060 66.667 0.00 0.00 0.00 6.13
1541 1773 4.500116 GGAGCAGACGAGCGACCC 62.500 72.222 0.00 0.00 40.15 4.46
1562 1794 0.719465 GACGATGTTAACAGTGCGGG 59.281 55.000 23.28 9.65 0.00 6.13
1563 1795 0.365523 CGACGATGTTAACAGTGCGG 59.634 55.000 23.28 10.98 0.00 5.69
1565 1797 0.094730 GGCGACGATGTTAACAGTGC 59.905 55.000 14.65 11.98 0.00 4.40
1620 1852 2.340443 GGATCGATCTCCACCGCC 59.660 66.667 23.96 2.51 35.24 6.13
1677 1909 1.522092 GATCATGTCCTCCACGCCA 59.478 57.895 0.00 0.00 0.00 5.69
1687 1919 2.102633 GACGACGAACTCGATCATGTC 58.897 52.381 6.05 2.87 46.14 3.06
1689 1921 1.105363 CGACGACGAACTCGATCATG 58.895 55.000 6.05 0.00 46.14 3.07
1735 1967 5.877012 ACTGAACAAGCATATGTACCTTCAG 59.123 40.000 21.40 21.40 39.04 3.02
1744 1976 9.791820 TTCATCATAAAACTGAACAAGCATATG 57.208 29.630 0.00 0.00 0.00 1.78
1764 1997 5.630121 ACCTAAATGTGGTCTTGTTCATCA 58.370 37.500 0.00 0.00 31.03 3.07
1795 2031 8.877864 ATCAAGGTATGTCCAGTTATCAAAAA 57.122 30.769 0.00 0.00 39.02 1.94
1829 2065 3.988976 TCATTTCAGGACTTCCCTCAG 57.011 47.619 0.00 0.00 45.60 3.35
1838 2074 5.221126 GGCTGGTTTCATATCATTTCAGGAC 60.221 44.000 0.00 0.00 0.00 3.85
1883 2119 5.763204 ACGGTTACAGACAGATTTGTGAATT 59.237 36.000 0.00 0.00 37.76 2.17
1884 2120 5.305585 ACGGTTACAGACAGATTTGTGAAT 58.694 37.500 0.00 0.00 37.76 2.57
1959 2243 3.411446 TCTCACGAAATTGATGCAGGTT 58.589 40.909 0.00 0.00 0.00 3.50
1973 2257 4.001652 ACATAGTTCTCGACTTCTCACGA 58.998 43.478 0.00 0.00 39.86 4.35
1975 2259 4.156190 TCCACATAGTTCTCGACTTCTCAC 59.844 45.833 0.00 0.00 39.86 3.51
1976 2260 4.332828 TCCACATAGTTCTCGACTTCTCA 58.667 43.478 0.00 0.00 39.86 3.27
1977 2261 4.732355 GCTCCACATAGTTCTCGACTTCTC 60.732 50.000 0.00 0.00 39.86 2.87
1982 2266 2.941453 TGCTCCACATAGTTCTCGAC 57.059 50.000 0.00 0.00 0.00 4.20
1991 2275 4.016444 GTCCCTGAATTTTGCTCCACATA 58.984 43.478 0.00 0.00 0.00 2.29
1992 2276 2.827921 GTCCCTGAATTTTGCTCCACAT 59.172 45.455 0.00 0.00 0.00 3.21
1994 2278 1.546029 GGTCCCTGAATTTTGCTCCAC 59.454 52.381 0.00 0.00 0.00 4.02
1997 2281 2.751806 CTGAGGTCCCTGAATTTTGCTC 59.248 50.000 0.00 0.00 0.00 4.26
1999 2283 2.519013 ACTGAGGTCCCTGAATTTTGC 58.481 47.619 0.00 0.00 0.00 3.68
2000 2284 5.316987 ACTAACTGAGGTCCCTGAATTTTG 58.683 41.667 0.00 0.00 0.00 2.44
2001 2285 5.584551 ACTAACTGAGGTCCCTGAATTTT 57.415 39.130 0.00 0.00 0.00 1.82
2002 2286 6.473758 GTTACTAACTGAGGTCCCTGAATTT 58.526 40.000 0.00 0.00 0.00 1.82
2003 2287 5.045797 GGTTACTAACTGAGGTCCCTGAATT 60.046 44.000 0.00 0.00 0.00 2.17
2004 2288 4.470304 GGTTACTAACTGAGGTCCCTGAAT 59.530 45.833 0.00 0.00 0.00 2.57
2005 2289 3.836562 GGTTACTAACTGAGGTCCCTGAA 59.163 47.826 0.00 0.00 0.00 3.02
2006 2290 3.181415 TGGTTACTAACTGAGGTCCCTGA 60.181 47.826 0.00 0.00 0.00 3.86
2007 2291 3.170717 TGGTTACTAACTGAGGTCCCTG 58.829 50.000 0.00 0.00 0.00 4.45
2008 2292 3.555117 TGGTTACTAACTGAGGTCCCT 57.445 47.619 0.00 0.00 0.00 4.20
2009 2293 3.581770 AGTTGGTTACTAACTGAGGTCCC 59.418 47.826 13.18 0.00 37.03 4.46
2010 2294 4.886496 AGTTGGTTACTAACTGAGGTCC 57.114 45.455 13.18 0.00 37.03 4.46
2011 2295 6.018180 CACAAAGTTGGTTACTAACTGAGGTC 60.018 42.308 14.56 0.00 38.32 3.85
2012 2296 5.820947 CACAAAGTTGGTTACTAACTGAGGT 59.179 40.000 14.56 10.20 38.32 3.85
2013 2297 5.820947 ACACAAAGTTGGTTACTAACTGAGG 59.179 40.000 14.56 9.64 38.32 3.86
2014 2298 6.761714 AGACACAAAGTTGGTTACTAACTGAG 59.238 38.462 14.56 12.12 38.32 3.35
2015 2299 6.646267 AGACACAAAGTTGGTTACTAACTGA 58.354 36.000 14.56 0.00 38.32 3.41
2016 2300 6.018180 GGAGACACAAAGTTGGTTACTAACTG 60.018 42.308 14.56 7.03 38.32 3.16
2017 2301 6.053650 GGAGACACAAAGTTGGTTACTAACT 58.946 40.000 8.31 8.31 39.92 2.24
2018 2302 5.818857 TGGAGACACAAAGTTGGTTACTAAC 59.181 40.000 3.32 3.32 32.49 2.34
2019 2303 5.991861 TGGAGACACAAAGTTGGTTACTAA 58.008 37.500 0.00 0.00 32.49 2.24
2020 2304 5.129815 ACTGGAGACACAAAGTTGGTTACTA 59.870 40.000 0.00 0.00 33.66 1.82
2021 2305 4.080526 ACTGGAGACACAAAGTTGGTTACT 60.081 41.667 0.00 0.00 35.57 2.24
2022 2306 4.196971 ACTGGAGACACAAAGTTGGTTAC 58.803 43.478 0.00 0.00 35.60 2.50
2023 2307 4.497291 ACTGGAGACACAAAGTTGGTTA 57.503 40.909 0.00 0.00 35.60 2.85
2024 2308 3.366052 ACTGGAGACACAAAGTTGGTT 57.634 42.857 0.00 0.00 35.60 3.67
2025 2309 4.706842 ATACTGGAGACACAAAGTTGGT 57.293 40.909 0.00 0.00 35.60 3.67
2026 2310 6.094048 CCAATATACTGGAGACACAAAGTTGG 59.906 42.308 0.00 0.00 38.96 3.77
2027 2311 6.878923 TCCAATATACTGGAGACACAAAGTTG 59.121 38.462 0.00 0.00 40.71 3.16
2028 2312 7.016153 TCCAATATACTGGAGACACAAAGTT 57.984 36.000 0.00 0.00 40.71 2.66
2029 2313 6.620877 TCCAATATACTGGAGACACAAAGT 57.379 37.500 0.00 0.00 40.71 2.66
2030 2314 7.989741 AGATTCCAATATACTGGAGACACAAAG 59.010 37.037 2.70 0.00 46.20 2.77
2031 2315 7.770433 CAGATTCCAATATACTGGAGACACAAA 59.230 37.037 2.70 0.00 46.20 2.83
2032 2316 7.092891 ACAGATTCCAATATACTGGAGACACAA 60.093 37.037 2.70 0.00 46.20 3.33
2033 2317 6.384015 ACAGATTCCAATATACTGGAGACACA 59.616 38.462 2.70 0.00 46.20 3.72
2034 2318 6.821388 ACAGATTCCAATATACTGGAGACAC 58.179 40.000 2.70 0.00 46.20 3.67
2035 2319 8.004801 TCTACAGATTCCAATATACTGGAGACA 58.995 37.037 2.70 0.00 46.20 3.41
2036 2320 8.410673 TCTACAGATTCCAATATACTGGAGAC 57.589 38.462 2.70 2.32 46.20 3.36
2037 2321 9.434275 TTTCTACAGATTCCAATATACTGGAGA 57.566 33.333 2.70 0.00 46.20 3.71
2038 2322 9.703892 CTTTCTACAGATTCCAATATACTGGAG 57.296 37.037 2.70 0.00 46.20 3.86
2049 2333 5.937540 TCAAAATCGCTTTCTACAGATTCCA 59.062 36.000 0.00 0.00 32.79 3.53
2083 2367 9.268268 CTCACTACCAACAACTGTAGATTTAAA 57.732 33.333 3.87 0.00 38.24 1.52
2084 2368 7.876068 CCTCACTACCAACAACTGTAGATTTAA 59.124 37.037 3.87 0.00 38.24 1.52
2085 2369 7.383687 CCTCACTACCAACAACTGTAGATTTA 58.616 38.462 3.87 0.00 38.24 1.40
2095 2379 2.256117 AGTGCCTCACTACCAACAAC 57.744 50.000 0.00 0.00 43.46 3.32
2158 2670 8.597662 ACGTCAGTTGTAATGTTTATAACACT 57.402 30.769 8.82 0.00 45.50 3.55
2159 2671 8.706035 AGACGTCAGTTGTAATGTTTATAACAC 58.294 33.333 19.50 0.92 45.50 3.32
2163 2675 9.563898 CTACAGACGTCAGTTGTAATGTTTATA 57.436 33.333 19.17 0.00 0.00 0.98
2164 2676 8.301720 TCTACAGACGTCAGTTGTAATGTTTAT 58.698 33.333 19.17 0.00 0.00 1.40
2169 2681 6.088217 CACTTCTACAGACGTCAGTTGTAATG 59.912 42.308 19.17 7.47 0.00 1.90
2170 2682 6.150318 CACTTCTACAGACGTCAGTTGTAAT 58.850 40.000 19.17 0.00 0.00 1.89
2173 2685 3.795826 GCACTTCTACAGACGTCAGTTGT 60.796 47.826 19.17 15.64 0.00 3.32
2174 2686 2.726760 GCACTTCTACAGACGTCAGTTG 59.273 50.000 19.17 16.65 0.00 3.16
2176 2688 2.030717 CAGCACTTCTACAGACGTCAGT 60.031 50.000 19.50 18.72 0.00 3.41
2177 2689 2.590073 CAGCACTTCTACAGACGTCAG 58.410 52.381 19.50 12.96 0.00 3.51
2180 2692 0.962489 AGCAGCACTTCTACAGACGT 59.038 50.000 0.00 0.00 0.00 4.34
2181 2693 1.068264 TGAGCAGCACTTCTACAGACG 60.068 52.381 0.00 0.00 0.00 4.18
2182 2694 2.732412 TGAGCAGCACTTCTACAGAC 57.268 50.000 0.00 0.00 0.00 3.51
2183 2695 2.630098 ACTTGAGCAGCACTTCTACAGA 59.370 45.455 0.00 0.00 0.00 3.41
2186 2698 1.462670 GCACTTGAGCAGCACTTCTAC 59.537 52.381 0.00 0.00 0.00 2.59
2188 2700 0.888285 GGCACTTGAGCAGCACTTCT 60.888 55.000 0.00 0.00 35.83 2.85
2189 2701 1.578423 GGCACTTGAGCAGCACTTC 59.422 57.895 0.00 0.00 35.83 3.01
2190 2702 1.900498 GGGCACTTGAGCAGCACTT 60.900 57.895 0.00 0.00 35.83 3.16
2191 2703 2.282040 GGGCACTTGAGCAGCACT 60.282 61.111 0.00 0.00 35.83 4.40
2192 2704 1.860484 GAAGGGCACTTGAGCAGCAC 61.860 60.000 5.57 0.00 36.97 4.40
2193 2705 1.601759 GAAGGGCACTTGAGCAGCA 60.602 57.895 5.57 0.00 36.97 4.41
2223 2759 6.212589 TGAAGAAGTACTGGTGGTGATAATGA 59.787 38.462 0.00 0.00 0.00 2.57
2224 2761 6.313905 GTGAAGAAGTACTGGTGGTGATAATG 59.686 42.308 0.00 0.00 0.00 1.90
2230 2767 2.104111 TGGTGAAGAAGTACTGGTGGTG 59.896 50.000 0.00 0.00 0.00 4.17
2233 2770 2.417719 GCTGGTGAAGAAGTACTGGTG 58.582 52.381 0.00 0.00 0.00 4.17
2243 2780 1.073025 AATGTGCGGCTGGTGAAGA 59.927 52.632 0.00 0.00 0.00 2.87
2256 2823 3.340814 AGAACTCCTACCAGCAATGTG 57.659 47.619 0.00 0.00 0.00 3.21
2276 2843 6.228258 GGACGTGCCTAGATTATTGGAATTA 58.772 40.000 0.00 0.00 0.00 1.40
2279 2846 4.067972 GGACGTGCCTAGATTATTGGAA 57.932 45.455 0.00 0.00 0.00 3.53
2280 2847 3.746045 GGACGTGCCTAGATTATTGGA 57.254 47.619 0.00 0.00 0.00 3.53
2296 2863 3.273434 ACATCACAAATGGATGAGGACG 58.727 45.455 9.18 0.00 43.80 4.79
2312 2879 5.863965 TGAACAGTGAGGTGATTTACATCA 58.136 37.500 0.00 0.00 46.81 3.07
2313 2880 6.992063 ATGAACAGTGAGGTGATTTACATC 57.008 37.500 0.00 0.00 40.41 3.06
2314 2881 7.765695 AAATGAACAGTGAGGTGATTTACAT 57.234 32.000 0.00 0.00 0.00 2.29
2315 2882 7.581213 AAAATGAACAGTGAGGTGATTTACA 57.419 32.000 0.00 0.00 0.00 2.41
2320 2887 8.859090 TCAAATTAAAATGAACAGTGAGGTGAT 58.141 29.630 0.00 0.00 0.00 3.06
2323 2890 8.641541 ACATCAAATTAAAATGAACAGTGAGGT 58.358 29.630 0.00 0.00 0.00 3.85
2329 2896 8.437742 GCCTCAACATCAAATTAAAATGAACAG 58.562 33.333 0.00 0.00 0.00 3.16
2331 2898 7.387397 TGGCCTCAACATCAAATTAAAATGAAC 59.613 33.333 3.32 0.00 0.00 3.18
2333 2900 7.002250 TGGCCTCAACATCAAATTAAAATGA 57.998 32.000 3.32 0.00 0.00 2.57
2334 2901 7.098477 TCTGGCCTCAACATCAAATTAAAATG 58.902 34.615 3.32 0.00 0.00 2.32
2338 2905 5.716228 ACATCTGGCCTCAACATCAAATTAA 59.284 36.000 3.32 0.00 0.00 1.40
2353 3071 4.638865 ACCGTTTTTAGATTACATCTGGCC 59.361 41.667 0.00 0.00 40.51 5.36
2357 3075 9.886132 ATCTTGTACCGTTTTTAGATTACATCT 57.114 29.630 0.00 0.00 43.33 2.90
2391 3110 4.074970 GGTGTTGACATGACAAGGAATCT 58.925 43.478 10.91 0.00 0.00 2.40
2438 3160 7.807198 TGGTGCACTTACCTAAATATTATGGA 58.193 34.615 17.98 0.00 41.43 3.41
2439 3161 8.635765 ATGGTGCACTTACCTAAATATTATGG 57.364 34.615 17.98 5.42 41.43 2.74
2446 3168 6.602009 GTCCTAAATGGTGCACTTACCTAAAT 59.398 38.462 17.98 0.00 41.43 1.40
2452 3174 6.480320 CAGATAGTCCTAAATGGTGCACTTAC 59.520 42.308 17.98 0.00 37.07 2.34
2454 3176 5.431765 CAGATAGTCCTAAATGGTGCACTT 58.568 41.667 17.98 5.89 37.07 3.16
2460 3187 5.426833 AGACAAGCAGATAGTCCTAAATGGT 59.573 40.000 0.00 0.00 37.07 3.55
2461 3188 5.757320 CAGACAAGCAGATAGTCCTAAATGG 59.243 44.000 0.00 0.00 32.82 3.16
2467 3194 2.826488 ACCAGACAAGCAGATAGTCCT 58.174 47.619 0.00 0.00 32.82 3.85
2470 3197 9.686683 AAATAAATAACCAGACAAGCAGATAGT 57.313 29.630 0.00 0.00 0.00 2.12
2471 3198 9.941664 CAAATAAATAACCAGACAAGCAGATAG 57.058 33.333 0.00 0.00 0.00 2.08
2472 3199 9.679661 TCAAATAAATAACCAGACAAGCAGATA 57.320 29.630 0.00 0.00 0.00 1.98
2508 3240 9.624697 CAACAATGTAGAATAAAGCTAAAAGCA 57.375 29.630 1.22 0.00 45.56 3.91
2509 3241 9.626045 ACAACAATGTAGAATAAAGCTAAAAGC 57.374 29.630 0.00 0.00 38.82 3.51
2513 3245 9.502091 ACTGACAACAATGTAGAATAAAGCTAA 57.498 29.630 0.00 0.00 40.74 3.09
2514 3246 9.151471 GACTGACAACAATGTAGAATAAAGCTA 57.849 33.333 0.00 0.00 40.74 3.32
2515 3247 7.119846 GGACTGACAACAATGTAGAATAAAGCT 59.880 37.037 0.00 0.00 40.74 3.74
2516 3248 7.094805 TGGACTGACAACAATGTAGAATAAAGC 60.095 37.037 0.00 0.00 40.74 3.51
2517 3249 8.322906 TGGACTGACAACAATGTAGAATAAAG 57.677 34.615 0.00 0.00 40.74 1.85
2518 3250 8.862325 ATGGACTGACAACAATGTAGAATAAA 57.138 30.769 0.00 0.00 40.74 1.40
2519 3251 8.321353 AGATGGACTGACAACAATGTAGAATAA 58.679 33.333 0.00 0.00 40.74 1.40
2520 3252 7.851228 AGATGGACTGACAACAATGTAGAATA 58.149 34.615 0.00 0.00 40.74 1.75
2521 3253 6.715280 AGATGGACTGACAACAATGTAGAAT 58.285 36.000 0.00 0.00 40.74 2.40
2522 3254 6.114187 AGATGGACTGACAACAATGTAGAA 57.886 37.500 0.00 0.00 40.74 2.10
2555 3287 5.708230 ACCCTTTGTATACGATGCTTTTTGA 59.292 36.000 0.00 0.00 0.00 2.69
2562 3294 3.808174 GGAAGACCCTTTGTATACGATGC 59.192 47.826 0.00 0.00 0.00 3.91
2566 3299 4.159879 AGACAGGAAGACCCTTTGTATACG 59.840 45.833 0.00 0.00 44.85 3.06
2596 3329 3.620427 ATGTGTTACTATGCCGTCCAA 57.380 42.857 0.00 0.00 0.00 3.53
2691 3432 1.227823 TTGCTTGCTACAGGCGTGT 60.228 52.632 17.24 17.24 45.43 4.49
2692 3433 1.207593 GTTGCTTGCTACAGGCGTG 59.792 57.895 4.53 4.53 45.43 5.34
2715 3456 6.426025 ACAAGTTTAATTCGGAGTACCTTGAC 59.574 38.462 13.75 0.00 0.00 3.18
2828 3569 6.194967 TCTCACTAGTTCATCTTGGATGGTA 58.805 40.000 0.00 0.00 0.00 3.25
2970 3713 7.186804 GTGTACACTGGTGTTTGATTATATGC 58.813 38.462 18.92 0.00 41.83 3.14
3029 3772 6.613699 AGGATAATTTGGAATATGGTGAGCA 58.386 36.000 0.00 0.00 0.00 4.26
3049 3795 3.769844 ACTTCATCGTCTGGTGTAAGGAT 59.230 43.478 0.00 0.00 0.00 3.24
3085 3832 5.915196 GCATAAACTGTTTCAAACCTGTCTC 59.085 40.000 9.38 0.00 0.00 3.36
3127 3874 3.432782 GACTGCAAAGCAATACATCAGC 58.567 45.455 0.00 0.00 38.41 4.26
3134 3881 1.068610 GCCAACGACTGCAAAGCAATA 60.069 47.619 0.00 0.00 38.41 1.90
3136 3883 1.065600 GCCAACGACTGCAAAGCAA 59.934 52.632 0.00 0.00 38.41 3.91
3181 3928 2.094545 GGAATGTGCAAACCTCCATGAC 60.095 50.000 0.00 0.00 0.00 3.06
3189 3936 3.451141 TTCACTTGGAATGTGCAAACC 57.549 42.857 0.00 0.00 41.34 3.27
3191 3938 4.431809 CAGTTTCACTTGGAATGTGCAAA 58.568 39.130 0.00 0.00 41.34 3.68
3324 4071 5.339200 GGATGAGGGGTATGTTTCTTCAAGA 60.339 44.000 0.00 0.00 0.00 3.02
3325 4072 4.884164 GGATGAGGGGTATGTTTCTTCAAG 59.116 45.833 0.00 0.00 0.00 3.02
3457 4211 6.690528 GCTATTTTCTGAGCAGCTTGAAATAC 59.309 38.462 18.97 9.74 38.62 1.89
3673 4431 5.110598 TGTACGTAGCTCTCTTCACTCTAG 58.889 45.833 0.00 0.00 0.00 2.43
3718 4476 1.398390 GCCACATCTCCAAAGTAAGCG 59.602 52.381 0.00 0.00 0.00 4.68
3755 4608 2.771943 TCCTTGCCCTCAACTTCGATAT 59.228 45.455 0.00 0.00 0.00 1.63
3769 4622 2.352805 CCTCACTGGGTCCTTGCC 59.647 66.667 0.00 0.00 0.00 4.52
3964 4818 3.606687 GAACCCAATTCGAGAAAGCCTA 58.393 45.455 0.00 0.00 0.00 3.93
3994 4848 4.581868 TGGGGGTTAAACAATTAGAGTCG 58.418 43.478 0.00 0.00 0.00 4.18
4066 4920 7.987458 TGAGATTTCAGTAGACATTTCCCATAC 59.013 37.037 0.00 0.00 0.00 2.39
4093 4947 3.274288 GCCGATTCAATGAGAGGACTTT 58.726 45.455 5.20 0.00 0.00 2.66
4197 5051 1.623311 TCATGCGTCCCCATATGGTAG 59.377 52.381 20.46 11.43 0.00 3.18
4246 5100 5.138996 TCCTACTCCTATCCCTTTATTCCCA 59.861 44.000 0.00 0.00 0.00 4.37
4247 5101 5.662597 TCCTACTCCTATCCCTTTATTCCC 58.337 45.833 0.00 0.00 0.00 3.97
4288 5145 9.343539 GCCTCTTCTTCCATTTGTACTATATTT 57.656 33.333 0.00 0.00 0.00 1.40
4289 5146 8.494433 TGCCTCTTCTTCCATTTGTACTATATT 58.506 33.333 0.00 0.00 0.00 1.28
4312 5169 1.906105 TAGATGTTCCCACCGGTGCC 61.906 60.000 29.75 15.82 0.00 5.01
4318 5175 3.635373 TCGTCAGTATAGATGTTCCCACC 59.365 47.826 0.00 0.00 0.00 4.61
4354 5211 9.702726 CATAAACAGGTTTCTTCATGTATTACG 57.297 33.333 0.00 0.00 32.06 3.18
4407 5264 2.034124 CAATATGGGTTCCTTGGCTGG 58.966 52.381 0.00 0.00 0.00 4.85
4425 5282 4.261405 CGAAAGGAAACAACATGCTACCAA 60.261 41.667 0.00 0.00 0.00 3.67
4445 5302 3.614150 GCGCCTAGACAATATGATCCGAA 60.614 47.826 0.00 0.00 0.00 4.30
4453 5310 3.198068 CAACACTGCGCCTAGACAATAT 58.802 45.455 4.18 0.00 0.00 1.28
4484 5341 1.396644 GACGAGACAATACGCGATCC 58.603 55.000 15.93 0.00 36.92 3.36
4490 5347 1.983605 AGTTTGCGACGAGACAATACG 59.016 47.619 0.00 0.00 0.00 3.06
4491 5348 2.984471 TCAGTTTGCGACGAGACAATAC 59.016 45.455 0.00 0.00 0.00 1.89
4523 5380 2.614229 GGAGAAGGCTCAACAAGAGGAC 60.614 54.545 0.00 0.00 44.86 3.85
4648 5505 6.705381 ACTTTCTCTTCTTCATCTTGTCACAG 59.295 38.462 0.00 0.00 0.00 3.66
4663 5520 7.472543 TGCTGTTTACTTTGAACTTTCTCTTC 58.527 34.615 0.00 0.00 0.00 2.87
4666 5523 8.534778 CAATTGCTGTTTACTTTGAACTTTCTC 58.465 33.333 0.00 0.00 0.00 2.87
4719 5576 3.129462 TCAGCTGTCTACTTCCATCTTCG 59.871 47.826 14.67 0.00 0.00 3.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.