Multiple sequence alignment - TraesCS7D01G153300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G153300 chr7D 100.000 5222 0 0 1 5222 101618799 101613578 0.000000e+00 9644.0
1 TraesCS7D01G153300 chr7D 94.118 51 3 0 4382 4432 128787636 128787686 1.560000e-10 78.7
2 TraesCS7D01G153300 chr7D 92.308 52 4 0 4379 4430 89278438 89278387 2.020000e-09 75.0
3 TraesCS7D01G153300 chr7A 94.802 2116 68 14 2482 4573 105362747 105360650 0.000000e+00 3260.0
4 TraesCS7D01G153300 chr7A 89.967 1525 91 17 136 1618 105364975 105363471 0.000000e+00 1912.0
5 TraesCS7D01G153300 chr7A 95.745 517 15 4 1915 2428 105363252 105362740 0.000000e+00 826.0
6 TraesCS7D01G153300 chr7A 91.312 564 18 7 4662 5222 105360652 105360117 0.000000e+00 741.0
7 TraesCS7D01G153300 chr7A 90.588 255 18 4 1663 1911 105363612 105363358 3.010000e-87 333.0
8 TraesCS7D01G153300 chr7A 93.103 87 6 0 3009 3095 202289150 202289236 1.530000e-25 128.0
9 TraesCS7D01G153300 chr7A 87.838 74 8 1 4562 4634 60986163 60986236 9.320000e-13 86.1
10 TraesCS7D01G153300 chr7A 90.909 55 3 2 2429 2481 649820513 649820459 7.250000e-09 73.1
11 TraesCS7D01G153300 chr7B 93.734 1516 55 18 3095 4573 58789707 58788195 0.000000e+00 2237.0
12 TraesCS7D01G153300 chr7B 90.551 1524 97 16 132 1620 58792470 58790959 0.000000e+00 1973.0
13 TraesCS7D01G153300 chr7B 97.732 529 12 0 2482 3010 58790237 58789709 0.000000e+00 911.0
14 TraesCS7D01G153300 chr7B 96.905 517 11 3 1915 2428 58790744 58790230 0.000000e+00 861.0
15 TraesCS7D01G153300 chr7B 87.113 582 26 13 4662 5222 58788197 58787644 9.610000e-172 614.0
16 TraesCS7D01G153300 chr7B 87.031 293 37 1 1 293 58793586 58793295 3.900000e-86 329.0
17 TraesCS7D01G153300 chr7B 89.062 256 17 6 1663 1911 58791101 58790850 1.830000e-79 307.0
18 TraesCS7D01G153300 chr7B 92.045 88 7 0 3006 3093 60366476 60366563 1.970000e-24 124.0
19 TraesCS7D01G153300 chr7B 92.593 54 3 1 2429 2481 677782470 677782523 5.610000e-10 76.8
20 TraesCS7D01G153300 chr5B 95.294 85 4 0 3009 3093 457129203 457129119 9.120000e-28 135.0
21 TraesCS7D01G153300 chr5B 91.935 62 4 1 4565 4625 477498013 477497952 9.320000e-13 86.1
22 TraesCS7D01G153300 chr5B 94.340 53 3 0 2429 2481 704985445 704985393 1.210000e-11 82.4
23 TraesCS7D01G153300 chr2B 92.473 93 7 0 4571 4663 26724670 26724762 3.280000e-27 134.0
24 TraesCS7D01G153300 chr2B 91.209 91 8 0 3006 3096 190651169 190651259 1.970000e-24 124.0
25 TraesCS7D01G153300 chr2B 90.805 87 8 0 3009 3095 23029138 23029052 3.300000e-22 117.0
26 TraesCS7D01G153300 chr4B 92.045 88 7 0 3006 3093 59873822 59873735 1.970000e-24 124.0
27 TraesCS7D01G153300 chr4B 94.545 55 3 0 4562 4616 42226008 42225954 9.320000e-13 86.1
28 TraesCS7D01G153300 chr3B 91.765 85 7 0 3009 3093 809835755 809835671 9.190000e-23 119.0
29 TraesCS7D01G153300 chr3B 90.323 62 5 1 4565 4625 178387702 178387641 4.330000e-11 80.5
30 TraesCS7D01G153300 chr3B 91.379 58 3 2 4378 4433 16219439 16219496 1.560000e-10 78.7
31 TraesCS7D01G153300 chr1B 85.321 109 13 3 2985 3093 549520039 549520144 5.530000e-20 110.0
32 TraesCS7D01G153300 chr1B 98.039 51 1 0 4566 4616 392114477 392114427 7.200000e-14 89.8
33 TraesCS7D01G153300 chr1B 90.741 54 5 0 2428 2481 554749716 554749769 7.250000e-09 73.1
34 TraesCS7D01G153300 chrUn 85.294 102 12 3 4571 4671 92718481 92718382 9.250000e-18 102.0
35 TraesCS7D01G153300 chr2D 90.141 71 5 2 4562 4630 79445883 79445953 2.000000e-14 91.6
36 TraesCS7D01G153300 chr2D 94.231 52 2 1 2429 2480 425758166 425758116 1.560000e-10 78.7
37 TraesCS7D01G153300 chr2D 92.308 52 4 0 4382 4433 67220929 67220878 2.020000e-09 75.0
38 TraesCS7D01G153300 chr4D 97.959 49 1 0 2429 2477 473978041 473977993 9.320000e-13 86.1
39 TraesCS7D01G153300 chr4D 94.444 54 2 1 2429 2481 452389034 452388981 1.210000e-11 82.4
40 TraesCS7D01G153300 chr4A 87.838 74 8 1 4562 4634 224866550 224866477 9.320000e-13 86.1
41 TraesCS7D01G153300 chr3D 87.013 77 9 1 4562 4637 381562342 381562266 9.320000e-13 86.1
42 TraesCS7D01G153300 chr3D 94.118 51 1 2 4378 4426 11581392 11581442 5.610000e-10 76.8
43 TraesCS7D01G153300 chr2A 94.444 54 3 0 4562 4615 186176929 186176982 3.350000e-12 84.2
44 TraesCS7D01G153300 chr2A 92.727 55 4 0 4379 4433 67537593 67537647 4.330000e-11 80.5
45 TraesCS7D01G153300 chr3A 92.453 53 4 0 2429 2481 431125672 431125724 5.610000e-10 76.8
46 TraesCS7D01G153300 chr3A 94.000 50 3 0 2429 2478 589208818 589208769 5.610000e-10 76.8
47 TraesCS7D01G153300 chr5A 90.566 53 5 0 4377 4429 564171874 564171926 2.610000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G153300 chr7D 101613578 101618799 5221 True 9644.000000 9644 100.000000 1 5222 1 chr7D.!!$R2 5221
1 TraesCS7D01G153300 chr7A 105360117 105364975 4858 True 1414.400000 3260 92.482800 136 5222 5 chr7A.!!$R2 5086
2 TraesCS7D01G153300 chr7B 58787644 58793586 5942 True 1033.142857 2237 91.732571 1 5222 7 chr7B.!!$R1 5221

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
173 174 0.098200 CGCGTTCACATCTCCGTCTA 59.902 55.0 0.00 0.00 0.00 2.59 F
624 1614 0.169009 GGCTGCTCAATTCGGTGTTC 59.831 55.0 0.00 0.00 0.00 3.18 F
1659 2690 0.031994 GCACCAAATCGGCAACAACT 59.968 50.0 0.00 0.00 39.03 3.16 F
2450 3593 0.179034 ATCTTTCGGATGCAGAGGCC 60.179 55.0 0.00 0.00 40.13 5.19 F
4051 5229 0.540454 CCTTCCTGCTGATCTGCTGA 59.460 55.0 26.05 18.64 34.47 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1640 2671 0.031994 AGTTGTTGCCGATTTGGTGC 59.968 50.000 0.00 0.00 41.21 5.01 R
2431 3574 0.179034 GGCCTCTGCATCCGAAAGAT 60.179 55.000 0.00 0.00 40.13 2.40 R
3452 4614 1.216178 GCATCAATGTGCCCACACC 59.784 57.895 2.82 0.00 46.86 4.16 R
4200 5378 1.077716 GCCCCTGTTGGCGAGTAAT 60.078 57.895 0.00 0.00 42.54 1.89 R
4890 6074 0.040058 TTTGTGAGGCATGGCATCCT 59.960 50.000 22.64 15.47 38.67 3.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 2.878429 CTCCACGACTCCACTCCG 59.122 66.667 0.00 0.00 0.00 4.63
38 39 2.278182 GACTCCACTCCGAGAGCAGC 62.278 65.000 1.33 0.00 33.18 5.25
39 40 3.408501 CTCCACTCCGAGAGCAGCG 62.409 68.421 1.33 0.00 32.04 5.18
58 59 2.779506 CGGGAGCCAGAGTTAAAAACT 58.220 47.619 0.00 0.00 46.38 2.66
100 101 3.941483 ACTCCGCAGATCCTTGTATTTTG 59.059 43.478 0.00 0.00 0.00 2.44
102 103 2.708514 CGCAGATCCTTGTATTTTGCG 58.291 47.619 5.92 5.92 45.20 4.85
134 135 4.035208 GGATTGCCGAACAGGTACTAAATG 59.965 45.833 0.00 0.00 43.70 2.32
156 157 1.012780 GGTTTGTTTTGCAACGCGC 60.013 52.632 5.73 0.00 36.72 6.86
167 168 1.225475 CAACGCGCGTTCACATCTC 60.225 57.895 42.16 0.00 36.00 2.75
173 174 0.098200 CGCGTTCACATCTCCGTCTA 59.902 55.000 0.00 0.00 0.00 2.59
209 210 3.011595 TCCACCAATTCCTCATCCAACAT 59.988 43.478 0.00 0.00 0.00 2.71
237 238 1.406341 TCGTAAGGTGCATTAGGTGCC 60.406 52.381 0.00 0.00 46.50 5.01
273 1258 2.158740 TCACCGGAAAATGTTCTCCACA 60.159 45.455 9.46 0.00 40.71 4.17
274 1259 2.226437 CACCGGAAAATGTTCTCCACAG 59.774 50.000 9.46 0.00 39.40 3.66
277 1262 2.484264 CGGAAAATGTTCTCCACAGTCC 59.516 50.000 0.00 0.00 39.40 3.85
295 1280 4.873129 ATCGCGCGCAGAACCGAT 62.873 61.111 32.61 20.65 35.79 4.18
299 1284 3.315521 CGCGCAGAACCGATCGAG 61.316 66.667 18.66 9.42 0.00 4.04
322 1308 2.206750 ACACGCAGTCACAATTAACGT 58.793 42.857 0.00 0.00 41.61 3.99
347 1333 2.832661 TGCACACCCACTGCCAAC 60.833 61.111 0.00 0.00 33.36 3.77
373 1359 3.892104 ATGCTGGTTGGCCCACCTG 62.892 63.158 25.49 24.72 38.72 4.00
375 1361 2.765969 CTGGTTGGCCCACCTGAT 59.234 61.111 25.49 0.00 38.72 2.90
381 1367 1.971505 TTGGCCCACCTGATAGCGAG 61.972 60.000 0.00 0.00 36.63 5.03
394 1381 0.686441 TAGCGAGAGGGGCTTAAGCA 60.686 55.000 27.83 1.13 44.36 3.91
395 1382 1.522580 GCGAGAGGGGCTTAAGCAG 60.523 63.158 27.83 10.94 44.36 4.24
396 1383 1.901085 CGAGAGGGGCTTAAGCAGT 59.099 57.895 27.83 12.12 44.36 4.40
397 1384 1.112113 CGAGAGGGGCTTAAGCAGTA 58.888 55.000 27.83 0.00 44.36 2.74
398 1385 1.202428 CGAGAGGGGCTTAAGCAGTAC 60.202 57.143 27.83 15.77 44.36 2.73
399 1386 0.824759 AGAGGGGCTTAAGCAGTACG 59.175 55.000 27.83 0.00 44.36 3.67
400 1387 0.535797 GAGGGGCTTAAGCAGTACGT 59.464 55.000 27.83 15.69 44.36 3.57
401 1388 1.753073 GAGGGGCTTAAGCAGTACGTA 59.247 52.381 27.83 0.00 44.36 3.57
413 1400 2.798283 GCAGTACGTACTTGTCAGCAAA 59.202 45.455 25.35 0.00 33.46 3.68
540 1530 4.142600 CCCACGATCCATTTCTTTTCTCAC 60.143 45.833 0.00 0.00 0.00 3.51
624 1614 0.169009 GGCTGCTCAATTCGGTGTTC 59.831 55.000 0.00 0.00 0.00 3.18
641 1640 3.180387 GTGTTCTTCGTGAAAGCAATTGC 59.820 43.478 23.05 23.05 42.49 3.56
676 1675 5.544650 CTGCAATCCAATTTCTTGTCCTTT 58.455 37.500 0.00 0.00 0.00 3.11
703 1702 2.228582 GCACCAATTTCCCCATTTTTGC 59.771 45.455 0.00 0.00 0.00 3.68
706 1705 1.128321 CAATTTCCCCATTTTTGCGCG 59.872 47.619 0.00 0.00 0.00 6.86
818 1828 0.396417 ACGGAGATGCACCTAGCTCT 60.396 55.000 0.00 0.00 45.94 4.09
831 1841 4.728058 GCTCTCAGCTCCGATCAC 57.272 61.111 0.00 0.00 38.45 3.06
938 1948 3.268986 CTCGTCGAGAGGCAGTGT 58.731 61.111 17.52 0.00 43.20 3.55
939 1949 2.467962 CTCGTCGAGAGGCAGTGTA 58.532 57.895 17.52 0.00 43.20 2.90
1015 2045 3.376935 AAGATGTCGCCTCAGCCGG 62.377 63.158 0.00 0.00 34.57 6.13
1153 2183 2.264480 CGTGGTTCCGGATGCTGA 59.736 61.111 4.15 0.00 0.00 4.26
1311 2341 2.735857 GTGTACCACGGCGTCACC 60.736 66.667 10.85 0.00 0.00 4.02
1320 2350 4.530857 GGCGTCACCTCCATCCCG 62.531 72.222 0.00 0.00 34.51 5.14
1440 2470 3.120041 CTGTTTTGGGCTTTTGGTTACG 58.880 45.455 0.00 0.00 0.00 3.18
1494 2525 6.040955 AGTCTGACTGAATTGTAGACTTGTGA 59.959 38.462 10.00 0.00 43.98 3.58
1505 2536 7.709269 TTGTAGACTTGTGATAGTGTTTGAC 57.291 36.000 0.00 0.00 0.00 3.18
1506 2537 6.220930 TGTAGACTTGTGATAGTGTTTGACC 58.779 40.000 0.00 0.00 0.00 4.02
1507 2538 5.290493 AGACTTGTGATAGTGTTTGACCA 57.710 39.130 0.00 0.00 0.00 4.02
1508 2539 5.869579 AGACTTGTGATAGTGTTTGACCAT 58.130 37.500 0.00 0.00 0.00 3.55
1509 2540 6.299141 AGACTTGTGATAGTGTTTGACCATT 58.701 36.000 0.00 0.00 0.00 3.16
1510 2541 6.772716 AGACTTGTGATAGTGTTTGACCATTT 59.227 34.615 0.00 0.00 0.00 2.32
1511 2542 6.738114 ACTTGTGATAGTGTTTGACCATTTG 58.262 36.000 0.00 0.00 0.00 2.32
1512 2543 5.703978 TGTGATAGTGTTTGACCATTTGG 57.296 39.130 0.00 0.00 42.17 3.28
1522 2553 4.537260 CCATTTGGTGCTGGGGAA 57.463 55.556 0.00 0.00 0.00 3.97
1523 2554 2.279842 CCATTTGGTGCTGGGGAAG 58.720 57.895 0.00 0.00 0.00 3.46
1524 2555 0.542702 CCATTTGGTGCTGGGGAAGT 60.543 55.000 0.00 0.00 0.00 3.01
1525 2556 1.272425 CCATTTGGTGCTGGGGAAGTA 60.272 52.381 0.00 0.00 0.00 2.24
1526 2557 1.818674 CATTTGGTGCTGGGGAAGTAC 59.181 52.381 0.00 0.00 40.54 2.73
1527 2558 0.847373 TTTGGTGCTGGGGAAGTACA 59.153 50.000 0.00 0.00 42.87 2.90
1528 2559 0.400213 TTGGTGCTGGGGAAGTACAG 59.600 55.000 0.00 0.00 42.87 2.74
1529 2560 0.766674 TGGTGCTGGGGAAGTACAGT 60.767 55.000 0.00 0.00 42.87 3.55
1530 2561 0.321653 GGTGCTGGGGAAGTACAGTG 60.322 60.000 0.00 0.00 42.87 3.66
1531 2562 0.685097 GTGCTGGGGAAGTACAGTGA 59.315 55.000 0.00 0.00 40.92 3.41
1532 2563 1.279271 GTGCTGGGGAAGTACAGTGAT 59.721 52.381 0.00 0.00 40.92 3.06
1533 2564 1.985159 TGCTGGGGAAGTACAGTGATT 59.015 47.619 0.00 0.00 37.07 2.57
1534 2565 3.055385 GTGCTGGGGAAGTACAGTGATTA 60.055 47.826 0.00 0.00 40.92 1.75
1535 2566 3.197766 TGCTGGGGAAGTACAGTGATTAG 59.802 47.826 0.00 0.00 37.07 1.73
1536 2567 3.197983 GCTGGGGAAGTACAGTGATTAGT 59.802 47.826 0.00 0.00 37.07 2.24
1537 2568 4.759782 CTGGGGAAGTACAGTGATTAGTG 58.240 47.826 0.00 0.00 0.00 2.74
1538 2569 4.422057 TGGGGAAGTACAGTGATTAGTGA 58.578 43.478 0.00 0.00 0.00 3.41
1539 2570 4.222145 TGGGGAAGTACAGTGATTAGTGAC 59.778 45.833 0.00 0.00 0.00 3.67
1540 2571 4.466726 GGGGAAGTACAGTGATTAGTGACT 59.533 45.833 0.00 0.00 0.00 3.41
1541 2572 5.655532 GGGGAAGTACAGTGATTAGTGACTA 59.344 44.000 0.00 0.00 0.00 2.59
1542 2573 6.183360 GGGGAAGTACAGTGATTAGTGACTAG 60.183 46.154 0.00 0.00 0.00 2.57
1543 2574 6.267070 GGAAGTACAGTGATTAGTGACTAGC 58.733 44.000 0.00 0.00 0.00 3.42
1544 2575 5.487153 AGTACAGTGATTAGTGACTAGCG 57.513 43.478 0.00 0.00 0.00 4.26
1545 2576 5.183969 AGTACAGTGATTAGTGACTAGCGA 58.816 41.667 0.00 0.00 0.00 4.93
1546 2577 4.358494 ACAGTGATTAGTGACTAGCGAC 57.642 45.455 0.00 0.00 0.00 5.19
1547 2578 3.181509 ACAGTGATTAGTGACTAGCGACG 60.182 47.826 0.00 0.00 0.00 5.12
1548 2579 3.063588 CAGTGATTAGTGACTAGCGACGA 59.936 47.826 0.00 0.00 0.00 4.20
1549 2580 3.688185 AGTGATTAGTGACTAGCGACGAA 59.312 43.478 0.00 0.00 0.00 3.85
1550 2581 3.784994 GTGATTAGTGACTAGCGACGAAC 59.215 47.826 0.00 0.00 0.00 3.95
1551 2582 2.907910 TTAGTGACTAGCGACGAACC 57.092 50.000 0.00 0.00 0.00 3.62
1552 2583 1.812235 TAGTGACTAGCGACGAACCA 58.188 50.000 0.00 0.00 0.00 3.67
1553 2584 1.174783 AGTGACTAGCGACGAACCAT 58.825 50.000 0.00 0.00 0.00 3.55
1554 2585 2.362736 AGTGACTAGCGACGAACCATA 58.637 47.619 0.00 0.00 0.00 2.74
1555 2586 2.950309 AGTGACTAGCGACGAACCATAT 59.050 45.455 0.00 0.00 0.00 1.78
1556 2587 3.003482 AGTGACTAGCGACGAACCATATC 59.997 47.826 0.00 0.00 0.00 1.63
1558 2589 2.216046 ACTAGCGACGAACCATATCGA 58.784 47.619 0.00 0.00 45.48 3.59
1559 2590 2.032204 ACTAGCGACGAACCATATCGAC 60.032 50.000 0.00 0.00 45.48 4.20
1563 2594 1.383120 GACGAACCATATCGACGTCG 58.617 55.000 31.30 31.30 45.48 5.12
1564 2595 0.729116 ACGAACCATATCGACGTCGT 59.271 50.000 34.40 24.05 45.48 4.34
1565 2596 1.267732 ACGAACCATATCGACGTCGTC 60.268 52.381 34.40 22.12 45.48 4.20
1575 2606 3.546407 GACGTCGTCGATTATGCCT 57.454 52.632 10.05 0.00 40.62 4.75
1576 2607 1.121240 GACGTCGTCGATTATGCCTG 58.879 55.000 10.05 0.00 40.62 4.85
1577 2608 0.454600 ACGTCGTCGATTATGCCTGT 59.545 50.000 9.47 0.00 40.62 4.00
1578 2609 0.846401 CGTCGTCGATTATGCCTGTG 59.154 55.000 0.00 0.00 39.71 3.66
1579 2610 1.209128 GTCGTCGATTATGCCTGTGG 58.791 55.000 0.00 0.00 0.00 4.17
1580 2611 0.821517 TCGTCGATTATGCCTGTGGT 59.178 50.000 0.00 0.00 0.00 4.16
1581 2612 1.206132 TCGTCGATTATGCCTGTGGTT 59.794 47.619 0.00 0.00 0.00 3.67
1582 2613 1.593006 CGTCGATTATGCCTGTGGTTC 59.407 52.381 0.00 0.00 0.00 3.62
1583 2614 2.627945 GTCGATTATGCCTGTGGTTCA 58.372 47.619 0.00 0.00 0.00 3.18
1584 2615 2.609459 GTCGATTATGCCTGTGGTTCAG 59.391 50.000 0.00 0.00 43.27 3.02
1585 2616 2.499693 TCGATTATGCCTGTGGTTCAGA 59.500 45.455 0.00 0.00 46.27 3.27
1586 2617 3.134623 TCGATTATGCCTGTGGTTCAGAT 59.865 43.478 0.00 0.00 46.27 2.90
1587 2618 4.343814 TCGATTATGCCTGTGGTTCAGATA 59.656 41.667 0.00 0.00 46.27 1.98
1588 2619 4.687948 CGATTATGCCTGTGGTTCAGATAG 59.312 45.833 0.00 0.00 46.27 2.08
1589 2620 4.422073 TTATGCCTGTGGTTCAGATAGG 57.578 45.455 0.00 0.00 46.27 2.57
1590 2621 1.951209 TGCCTGTGGTTCAGATAGGA 58.049 50.000 0.00 0.00 46.27 2.94
1591 2622 2.481441 TGCCTGTGGTTCAGATAGGAT 58.519 47.619 0.00 0.00 46.27 3.24
1592 2623 3.653164 TGCCTGTGGTTCAGATAGGATA 58.347 45.455 0.00 0.00 46.27 2.59
1593 2624 3.643320 TGCCTGTGGTTCAGATAGGATAG 59.357 47.826 0.00 0.00 46.27 2.08
1594 2625 3.007398 GCCTGTGGTTCAGATAGGATAGG 59.993 52.174 0.00 0.00 46.27 2.57
1595 2626 3.007398 CCTGTGGTTCAGATAGGATAGGC 59.993 52.174 0.00 0.00 46.27 3.93
1596 2627 3.643320 CTGTGGTTCAGATAGGATAGGCA 59.357 47.826 0.00 0.00 46.27 4.75
1597 2628 4.234550 TGTGGTTCAGATAGGATAGGCAT 58.765 43.478 0.00 0.00 0.00 4.40
1598 2629 4.660303 TGTGGTTCAGATAGGATAGGCATT 59.340 41.667 0.00 0.00 0.00 3.56
1599 2630 5.132648 TGTGGTTCAGATAGGATAGGCATTT 59.867 40.000 0.00 0.00 0.00 2.32
1600 2631 5.703130 GTGGTTCAGATAGGATAGGCATTTC 59.297 44.000 0.00 0.00 0.00 2.17
1601 2632 5.608437 TGGTTCAGATAGGATAGGCATTTCT 59.392 40.000 0.00 0.00 0.00 2.52
1602 2633 6.101734 TGGTTCAGATAGGATAGGCATTTCTT 59.898 38.462 0.00 0.00 0.00 2.52
1603 2634 6.652900 GGTTCAGATAGGATAGGCATTTCTTC 59.347 42.308 0.00 0.00 0.00 2.87
1604 2635 6.030548 TCAGATAGGATAGGCATTTCTTCG 57.969 41.667 0.00 0.00 0.00 3.79
1605 2636 4.629200 CAGATAGGATAGGCATTTCTTCGC 59.371 45.833 0.00 0.00 0.00 4.70
1606 2637 4.530161 AGATAGGATAGGCATTTCTTCGCT 59.470 41.667 0.00 0.00 0.00 4.93
1607 2638 2.843701 AGGATAGGCATTTCTTCGCTG 58.156 47.619 0.00 0.00 0.00 5.18
1608 2639 1.265365 GGATAGGCATTTCTTCGCTGC 59.735 52.381 0.00 0.00 35.16 5.25
1609 2640 2.216898 GATAGGCATTTCTTCGCTGCT 58.783 47.619 0.00 0.00 36.18 4.24
1610 2641 2.979814 TAGGCATTTCTTCGCTGCTA 57.020 45.000 0.00 0.00 36.18 3.49
1611 2642 2.338577 AGGCATTTCTTCGCTGCTAT 57.661 45.000 0.00 0.00 36.18 2.97
1612 2643 1.945394 AGGCATTTCTTCGCTGCTATG 59.055 47.619 0.00 0.00 36.18 2.23
1613 2644 1.598924 GGCATTTCTTCGCTGCTATGC 60.599 52.381 0.00 0.00 38.06 3.14
1614 2645 1.064505 GCATTTCTTCGCTGCTATGCA 59.935 47.619 0.00 0.00 38.51 3.96
1615 2646 2.713011 CATTTCTTCGCTGCTATGCAC 58.287 47.619 0.00 0.00 33.79 4.57
1616 2647 2.099141 TTTCTTCGCTGCTATGCACT 57.901 45.000 0.00 0.00 33.79 4.40
1617 2648 2.959507 TTCTTCGCTGCTATGCACTA 57.040 45.000 0.00 0.00 33.79 2.74
1618 2649 3.459232 TTCTTCGCTGCTATGCACTAT 57.541 42.857 0.00 0.00 33.79 2.12
1619 2650 2.747436 TCTTCGCTGCTATGCACTATG 58.253 47.619 0.00 0.00 33.79 2.23
1620 2651 1.194098 CTTCGCTGCTATGCACTATGC 59.806 52.381 0.00 0.00 45.29 3.14
1633 2664 4.841443 GCACTATGCATCCAAATGATCA 57.159 40.909 0.19 0.00 44.26 2.92
1634 2665 5.386958 GCACTATGCATCCAAATGATCAT 57.613 39.130 0.19 1.18 44.26 2.45
1635 2666 5.161358 GCACTATGCATCCAAATGATCATG 58.839 41.667 9.46 0.00 44.26 3.07
1636 2667 5.278808 GCACTATGCATCCAAATGATCATGT 60.279 40.000 9.46 0.00 44.26 3.21
1637 2668 6.072342 GCACTATGCATCCAAATGATCATGTA 60.072 38.462 9.46 0.00 44.26 2.29
1638 2669 7.527457 CACTATGCATCCAAATGATCATGTAG 58.473 38.462 9.46 0.00 34.61 2.74
1639 2670 7.174426 CACTATGCATCCAAATGATCATGTAGT 59.826 37.037 9.46 0.00 34.61 2.73
1640 2671 5.761165 TGCATCCAAATGATCATGTAGTG 57.239 39.130 9.46 6.49 34.61 2.74
1641 2672 4.037089 TGCATCCAAATGATCATGTAGTGC 59.963 41.667 9.46 15.58 34.61 4.40
1642 2673 4.037089 GCATCCAAATGATCATGTAGTGCA 59.963 41.667 9.46 0.00 34.61 4.57
1643 2674 5.516996 CATCCAAATGATCATGTAGTGCAC 58.483 41.667 9.40 9.40 34.61 4.57
1644 2675 3.947196 TCCAAATGATCATGTAGTGCACC 59.053 43.478 14.63 0.00 0.00 5.01
1645 2676 3.695556 CCAAATGATCATGTAGTGCACCA 59.304 43.478 14.63 5.64 0.00 4.17
1646 2677 4.158209 CCAAATGATCATGTAGTGCACCAA 59.842 41.667 14.63 0.00 0.00 3.67
1647 2678 5.336610 CCAAATGATCATGTAGTGCACCAAA 60.337 40.000 14.63 0.00 0.00 3.28
1648 2679 6.334989 CAAATGATCATGTAGTGCACCAAAT 58.665 36.000 14.63 0.00 0.00 2.32
1649 2680 5.762825 ATGATCATGTAGTGCACCAAATC 57.237 39.130 14.63 12.57 0.00 2.17
1650 2681 3.622612 TGATCATGTAGTGCACCAAATCG 59.377 43.478 14.63 0.00 0.00 3.34
1651 2682 2.355197 TCATGTAGTGCACCAAATCGG 58.645 47.619 14.63 0.00 42.50 4.18
1652 2683 1.094785 ATGTAGTGCACCAAATCGGC 58.905 50.000 14.63 0.00 39.03 5.54
1653 2684 0.250510 TGTAGTGCACCAAATCGGCA 60.251 50.000 14.63 0.00 39.03 5.69
1654 2685 0.878416 GTAGTGCACCAAATCGGCAA 59.122 50.000 14.63 0.00 39.57 4.52
1655 2686 0.878416 TAGTGCACCAAATCGGCAAC 59.122 50.000 14.63 0.00 39.57 4.17
1656 2687 1.106351 AGTGCACCAAATCGGCAACA 61.106 50.000 14.63 0.00 39.57 3.33
1657 2688 0.249238 GTGCACCAAATCGGCAACAA 60.249 50.000 5.22 0.00 39.57 2.83
1658 2689 0.249238 TGCACCAAATCGGCAACAAC 60.249 50.000 0.00 0.00 39.03 3.32
1659 2690 0.031994 GCACCAAATCGGCAACAACT 59.968 50.000 0.00 0.00 39.03 3.16
1660 2691 1.268352 GCACCAAATCGGCAACAACTA 59.732 47.619 0.00 0.00 39.03 2.24
1661 2692 2.094752 GCACCAAATCGGCAACAACTAT 60.095 45.455 0.00 0.00 39.03 2.12
1662 2693 3.758300 CACCAAATCGGCAACAACTATC 58.242 45.455 0.00 0.00 39.03 2.08
1663 2694 3.440173 CACCAAATCGGCAACAACTATCT 59.560 43.478 0.00 0.00 39.03 1.98
1664 2695 3.440173 ACCAAATCGGCAACAACTATCTG 59.560 43.478 0.00 0.00 39.03 2.90
1665 2696 3.689161 CCAAATCGGCAACAACTATCTGA 59.311 43.478 0.00 0.00 0.00 3.27
1666 2697 4.155826 CCAAATCGGCAACAACTATCTGAA 59.844 41.667 0.00 0.00 0.00 3.02
1667 2698 5.163622 CCAAATCGGCAACAACTATCTGAAT 60.164 40.000 0.00 0.00 0.00 2.57
1668 2699 6.324819 CAAATCGGCAACAACTATCTGAATT 58.675 36.000 0.00 0.00 0.00 2.17
1669 2700 4.944962 TCGGCAACAACTATCTGAATTG 57.055 40.909 0.00 0.00 0.00 2.32
1670 2701 4.323417 TCGGCAACAACTATCTGAATTGT 58.677 39.130 0.00 0.94 38.18 2.71
1671 2702 5.483811 TCGGCAACAACTATCTGAATTGTA 58.516 37.500 5.95 0.00 35.54 2.41
1672 2703 5.580691 TCGGCAACAACTATCTGAATTGTAG 59.419 40.000 5.95 0.00 35.54 2.74
1673 2704 5.580691 CGGCAACAACTATCTGAATTGTAGA 59.419 40.000 5.95 0.00 35.54 2.59
1674 2705 6.455646 CGGCAACAACTATCTGAATTGTAGAC 60.456 42.308 5.95 1.06 35.54 2.59
1675 2706 6.595716 GGCAACAACTATCTGAATTGTAGACT 59.404 38.462 5.95 0.00 35.54 3.24
1676 2707 7.119846 GGCAACAACTATCTGAATTGTAGACTT 59.880 37.037 5.95 0.00 35.54 3.01
1677 2708 7.959651 GCAACAACTATCTGAATTGTAGACTTG 59.040 37.037 5.95 3.04 35.54 3.16
1678 2709 8.993121 CAACAACTATCTGAATTGTAGACTTGT 58.007 33.333 5.95 0.00 35.54 3.16
1679 2710 8.539770 ACAACTATCTGAATTGTAGACTTGTG 57.460 34.615 4.17 0.00 34.84 3.33
1680 2711 7.604164 ACAACTATCTGAATTGTAGACTTGTGG 59.396 37.037 4.17 0.00 34.84 4.17
1681 2712 7.246171 ACTATCTGAATTGTAGACTTGTGGT 57.754 36.000 0.00 0.00 0.00 4.16
1682 2713 8.362464 ACTATCTGAATTGTAGACTTGTGGTA 57.638 34.615 0.00 0.00 0.00 3.25
1683 2714 8.470805 ACTATCTGAATTGTAGACTTGTGGTAG 58.529 37.037 0.00 0.00 0.00 3.18
1684 2715 6.665992 TCTGAATTGTAGACTTGTGGTAGT 57.334 37.500 0.00 0.00 0.00 2.73
1685 2716 6.455647 TCTGAATTGTAGACTTGTGGTAGTG 58.544 40.000 0.00 0.00 0.00 2.74
1686 2717 6.041637 TCTGAATTGTAGACTTGTGGTAGTGT 59.958 38.462 0.00 0.00 0.00 3.55
1687 2718 6.588204 TGAATTGTAGACTTGTGGTAGTGTT 58.412 36.000 0.00 0.00 0.00 3.32
1688 2719 7.051623 TGAATTGTAGACTTGTGGTAGTGTTT 58.948 34.615 0.00 0.00 0.00 2.83
1689 2720 7.225931 TGAATTGTAGACTTGTGGTAGTGTTTC 59.774 37.037 0.00 0.00 0.00 2.78
1732 2763 5.365025 AGCATAGTGATTAGTGACCAGTGAT 59.635 40.000 0.00 0.00 0.00 3.06
1742 2773 4.473444 AGTGACCAGTGATGAACCAAATT 58.527 39.130 0.00 0.00 0.00 1.82
1776 2807 2.216148 GCCTGTGGCTCAGATAGGT 58.784 57.895 17.63 0.00 46.69 3.08
1801 2838 2.171237 TCTTGCTGCTATGCACTATGGT 59.829 45.455 0.00 0.00 43.20 3.55
1808 2845 5.567623 GCTGCTATGCACTATGGTACTATGT 60.568 44.000 1.31 0.00 33.79 2.29
1911 2949 7.885297 TGAATTGCATATAGGGAAATGCTAAC 58.115 34.615 8.57 2.11 46.87 2.34
1913 2951 9.231297 GAATTGCATATAGGGAAATGCTAACTA 57.769 33.333 8.57 0.00 46.87 2.24
2006 3149 1.368268 TTGCCCCCTCCCTGTTTTCT 61.368 55.000 0.00 0.00 0.00 2.52
2039 3182 1.615392 GGCATAATGGGAGTGATTGCC 59.385 52.381 0.00 0.00 41.09 4.52
2285 3428 1.747355 GCAATTGGATCACAGGTGAGG 59.253 52.381 7.72 0.00 43.61 3.86
2306 3449 5.150715 AGGATCACCAGCTCATAATACTCA 58.849 41.667 0.00 0.00 38.94 3.41
2396 3539 9.359653 CCTCATAAATCCAATCCAGAGTATTTT 57.640 33.333 0.00 0.00 0.00 1.82
2426 3569 8.306761 CACATATACACTCTGGTTATGCATAGA 58.693 37.037 6.50 1.54 0.00 1.98
2427 3570 8.526978 ACATATACACTCTGGTTATGCATAGAG 58.473 37.037 18.58 18.58 41.78 2.43
2449 3592 0.942962 CATCTTTCGGATGCAGAGGC 59.057 55.000 0.00 0.00 44.21 4.70
2450 3593 0.179034 ATCTTTCGGATGCAGAGGCC 60.179 55.000 0.00 0.00 40.13 5.19
2451 3594 2.125147 TTTCGGATGCAGAGGCCG 60.125 61.111 12.24 12.24 46.08 6.13
2452 3595 3.680620 TTTCGGATGCAGAGGCCGG 62.681 63.158 16.62 0.00 44.87 6.13
2460 3603 3.866582 CAGAGGCCGGGGGTGATC 61.867 72.222 2.18 0.00 0.00 2.92
2473 3616 2.319025 GGTGATCCCCCTTTTCCAAA 57.681 50.000 0.00 0.00 0.00 3.28
2474 3617 2.615391 GGTGATCCCCCTTTTCCAAAA 58.385 47.619 0.00 0.00 0.00 2.44
2475 3618 2.976185 GGTGATCCCCCTTTTCCAAAAA 59.024 45.455 0.00 0.00 0.00 1.94
2531 3674 3.458189 CTCCTCTATTTTGCCGTGTAGG 58.542 50.000 0.00 0.00 44.97 3.18
2544 3687 5.979993 TGCCGTGTAGGAAGTAAATTATCA 58.020 37.500 0.00 0.00 45.00 2.15
2545 3688 6.588204 TGCCGTGTAGGAAGTAAATTATCAT 58.412 36.000 0.00 0.00 45.00 2.45
3023 4166 7.614583 GTGCTATAATATACTCCCTCTGTACCA 59.385 40.741 0.00 0.00 0.00 3.25
3078 4221 5.950883 GCTACTCCAGCGACATATATTACA 58.049 41.667 0.00 0.00 41.37 2.41
3276 4437 9.340695 TGTTATTTTGACTGCAATATCTTTTCG 57.659 29.630 0.00 0.00 33.25 3.46
3408 4570 7.270757 TGGATATATTCCCGAACAAATGTTG 57.729 36.000 3.05 0.00 44.77 3.33
3512 4688 6.507958 TCTTTGATGCATGACCGAAATAAA 57.492 33.333 2.46 0.00 0.00 1.40
3564 4742 4.095610 GGTTTATCTTCGCAATTGGTTCG 58.904 43.478 7.72 2.49 0.00 3.95
3627 4805 1.578206 GGGACCACTCTTTTCGCAGC 61.578 60.000 0.00 0.00 0.00 5.25
3681 4859 4.449131 TGTCAGGAATGCTTGATCTGATC 58.551 43.478 10.72 10.72 36.93 2.92
3687 4865 4.036498 GGAATGCTTGATCTGATCTTGGTG 59.964 45.833 17.82 5.66 0.00 4.17
3771 4949 1.406539 GCCAAGATGATCAACCGCATT 59.593 47.619 0.00 0.00 0.00 3.56
3814 4992 4.981415 GCTCAAAGCTTTGCCCAG 57.019 55.556 30.35 23.49 38.45 4.45
3840 5018 1.741401 CGAGGGCACATTCTTCGCA 60.741 57.895 0.00 0.00 0.00 5.10
4045 5223 4.679373 TCTAACATCCTTCCTGCTGATC 57.321 45.455 0.00 0.00 0.00 2.92
4051 5229 0.540454 CCTTCCTGCTGATCTGCTGA 59.460 55.000 26.05 18.64 34.47 4.26
4052 5230 1.065636 CCTTCCTGCTGATCTGCTGAA 60.066 52.381 26.05 22.89 34.47 3.02
4200 5378 0.888619 AAGATGACGACGAGGCTTCA 59.111 50.000 0.00 0.00 34.68 3.02
4237 5417 1.605710 GCTGATGGACCATACACATGC 59.394 52.381 7.05 4.32 0.00 4.06
4309 5489 7.804614 TCACATTGTGTTGTTTTTAGTTGTC 57.195 32.000 16.06 0.00 34.79 3.18
4334 5516 8.095792 TCCATGCTGTTGTATTCATTCATTTTT 58.904 29.630 0.00 0.00 0.00 1.94
4374 5556 7.976135 ATCATCAAATGCCAGATAGTACTTC 57.024 36.000 0.00 0.00 0.00 3.01
4476 5658 7.386025 CACTGTGTTATCTGATCTTGACTCAAA 59.614 37.037 0.00 0.00 0.00 2.69
4484 5666 7.895975 TCTGATCTTGACTCAAAGTTGTATG 57.104 36.000 0.00 0.00 0.00 2.39
4495 5677 8.918202 ACTCAAAGTTGTATGATTTACCTTCA 57.082 30.769 0.00 0.00 0.00 3.02
4537 5719 3.686016 GTGTCTATTTTCCTTCTGCCCA 58.314 45.455 0.00 0.00 0.00 5.36
4561 5743 3.557264 GCTTAACCTGGCTAGTTCACACT 60.557 47.826 0.00 0.00 36.99 3.55
4573 5755 7.124298 TGGCTAGTTCACACTTCATAATCTACT 59.876 37.037 0.00 0.00 34.06 2.57
4574 5756 7.650104 GGCTAGTTCACACTTCATAATCTACTC 59.350 40.741 0.00 0.00 34.06 2.59
4575 5757 7.650104 GCTAGTTCACACTTCATAATCTACTCC 59.350 40.741 0.00 0.00 34.06 3.85
4576 5758 6.879400 AGTTCACACTTCATAATCTACTCCC 58.121 40.000 0.00 0.00 0.00 4.30
4577 5759 6.670027 AGTTCACACTTCATAATCTACTCCCT 59.330 38.462 0.00 0.00 0.00 4.20
4578 5760 6.716934 TCACACTTCATAATCTACTCCCTC 57.283 41.667 0.00 0.00 0.00 4.30
4579 5761 5.598830 TCACACTTCATAATCTACTCCCTCC 59.401 44.000 0.00 0.00 0.00 4.30
4580 5762 4.585162 ACACTTCATAATCTACTCCCTCCG 59.415 45.833 0.00 0.00 0.00 4.63
4581 5763 4.585162 CACTTCATAATCTACTCCCTCCGT 59.415 45.833 0.00 0.00 0.00 4.69
4582 5764 4.828387 ACTTCATAATCTACTCCCTCCGTC 59.172 45.833 0.00 0.00 0.00 4.79
4583 5765 3.764218 TCATAATCTACTCCCTCCGTCC 58.236 50.000 0.00 0.00 0.00 4.79
4584 5766 2.671896 TAATCTACTCCCTCCGTCCC 57.328 55.000 0.00 0.00 0.00 4.46
4585 5767 0.635009 AATCTACTCCCTCCGTCCCA 59.365 55.000 0.00 0.00 0.00 4.37
4586 5768 0.635009 ATCTACTCCCTCCGTCCCAA 59.365 55.000 0.00 0.00 0.00 4.12
4587 5769 0.410663 TCTACTCCCTCCGTCCCAAA 59.589 55.000 0.00 0.00 0.00 3.28
4588 5770 1.203212 TCTACTCCCTCCGTCCCAAAA 60.203 52.381 0.00 0.00 0.00 2.44
4589 5771 1.838077 CTACTCCCTCCGTCCCAAAAT 59.162 52.381 0.00 0.00 0.00 1.82
4590 5772 1.073098 ACTCCCTCCGTCCCAAAATT 58.927 50.000 0.00 0.00 0.00 1.82
4591 5773 1.004394 ACTCCCTCCGTCCCAAAATTC 59.996 52.381 0.00 0.00 0.00 2.17
4592 5774 0.330267 TCCCTCCGTCCCAAAATTCC 59.670 55.000 0.00 0.00 0.00 3.01
4593 5775 0.331616 CCCTCCGTCCCAAAATTCCT 59.668 55.000 0.00 0.00 0.00 3.36
4594 5776 1.463674 CCTCCGTCCCAAAATTCCTG 58.536 55.000 0.00 0.00 0.00 3.86
4595 5777 1.271926 CCTCCGTCCCAAAATTCCTGT 60.272 52.381 0.00 0.00 0.00 4.00
4596 5778 2.084546 CTCCGTCCCAAAATTCCTGTC 58.915 52.381 0.00 0.00 0.00 3.51
4597 5779 1.702957 TCCGTCCCAAAATTCCTGTCT 59.297 47.619 0.00 0.00 0.00 3.41
4598 5780 2.107552 TCCGTCCCAAAATTCCTGTCTT 59.892 45.455 0.00 0.00 0.00 3.01
4599 5781 3.328343 TCCGTCCCAAAATTCCTGTCTTA 59.672 43.478 0.00 0.00 0.00 2.10
4600 5782 4.076394 CCGTCCCAAAATTCCTGTCTTAA 58.924 43.478 0.00 0.00 0.00 1.85
4601 5783 4.521256 CCGTCCCAAAATTCCTGTCTTAAA 59.479 41.667 0.00 0.00 0.00 1.52
4602 5784 5.185056 CCGTCCCAAAATTCCTGTCTTAAAT 59.815 40.000 0.00 0.00 0.00 1.40
4603 5785 6.295067 CCGTCCCAAAATTCCTGTCTTAAATT 60.295 38.462 0.00 0.00 0.00 1.82
4604 5786 7.151976 CGTCCCAAAATTCCTGTCTTAAATTT 58.848 34.615 0.00 0.00 34.86 1.82
4605 5787 7.116233 CGTCCCAAAATTCCTGTCTTAAATTTG 59.884 37.037 0.00 0.00 33.95 2.32
4606 5788 7.931407 GTCCCAAAATTCCTGTCTTAAATTTGT 59.069 33.333 0.00 0.00 33.95 2.83
4607 5789 8.147704 TCCCAAAATTCCTGTCTTAAATTTGTC 58.852 33.333 0.00 0.00 33.95 3.18
4608 5790 8.150296 CCCAAAATTCCTGTCTTAAATTTGTCT 58.850 33.333 0.00 0.00 33.95 3.41
4615 5797 9.582431 TTCCTGTCTTAAATTTGTCTAGATACG 57.418 33.333 0.00 0.00 0.00 3.06
4616 5798 7.705325 TCCTGTCTTAAATTTGTCTAGATACGC 59.295 37.037 0.00 0.00 0.00 4.42
4617 5799 7.042658 CCTGTCTTAAATTTGTCTAGATACGCC 60.043 40.741 0.00 0.00 0.00 5.68
4618 5800 6.474427 TGTCTTAAATTTGTCTAGATACGCCG 59.526 38.462 0.00 0.00 0.00 6.46
4619 5801 6.474751 GTCTTAAATTTGTCTAGATACGCCGT 59.525 38.462 0.00 0.00 0.00 5.68
4620 5802 7.645340 GTCTTAAATTTGTCTAGATACGCCGTA 59.355 37.037 0.00 0.00 0.00 4.02
4621 5803 8.355169 TCTTAAATTTGTCTAGATACGCCGTAT 58.645 33.333 9.94 9.94 0.00 3.06
4622 5804 8.511465 TTAAATTTGTCTAGATACGCCGTATC 57.489 34.615 25.72 25.72 43.52 2.24
4635 5817 8.511465 GATACGCCGTATCTAGACAAATTTAA 57.489 34.615 25.76 0.00 40.97 1.52
4636 5818 6.823678 ACGCCGTATCTAGACAAATTTAAG 57.176 37.500 0.00 0.00 0.00 1.85
4637 5819 6.567050 ACGCCGTATCTAGACAAATTTAAGA 58.433 36.000 0.00 0.00 0.00 2.10
4638 5820 7.208080 ACGCCGTATCTAGACAAATTTAAGAT 58.792 34.615 0.00 0.68 0.00 2.40
4639 5821 8.355169 ACGCCGTATCTAGACAAATTTAAGATA 58.645 33.333 0.00 0.00 0.00 1.98
4640 5822 8.851416 CGCCGTATCTAGACAAATTTAAGATAG 58.149 37.037 0.00 3.67 31.59 2.08
4641 5823 9.141400 GCCGTATCTAGACAAATTTAAGATAGG 57.859 37.037 0.00 15.86 35.95 2.57
4650 5832 9.025041 AGACAAATTTAAGATAGGAGTTTTGGG 57.975 33.333 0.00 0.00 0.00 4.12
4651 5833 8.950007 ACAAATTTAAGATAGGAGTTTTGGGA 57.050 30.769 0.00 0.00 0.00 4.37
4652 5834 8.803235 ACAAATTTAAGATAGGAGTTTTGGGAC 58.197 33.333 0.00 0.00 0.00 4.46
4653 5835 7.625828 AATTTAAGATAGGAGTTTTGGGACG 57.374 36.000 0.00 0.00 0.00 4.79
4654 5836 3.629142 AAGATAGGAGTTTTGGGACGG 57.371 47.619 0.00 0.00 0.00 4.79
4655 5837 2.829023 AGATAGGAGTTTTGGGACGGA 58.171 47.619 0.00 0.00 0.00 4.69
4656 5838 2.766828 AGATAGGAGTTTTGGGACGGAG 59.233 50.000 0.00 0.00 0.00 4.63
4890 6074 2.029739 TGGCGAGACACAAGACGAATTA 60.030 45.455 0.00 0.00 0.00 1.40
5004 6207 1.103803 CTCGAAGGGAGATCGTGGAA 58.896 55.000 0.00 0.00 46.23 3.53
5007 6210 0.537188 GAAGGGAGATCGTGGAAGCA 59.463 55.000 0.00 0.00 0.00 3.91
5028 6231 4.261280 GCAGAAATAGAGAGACCGTCTACC 60.261 50.000 0.00 0.00 34.71 3.18
5029 6232 4.276431 CAGAAATAGAGAGACCGTCTACCC 59.724 50.000 0.00 0.00 34.71 3.69
5034 6237 2.309458 AGAGAGACCGTCTACCCTTCTT 59.691 50.000 0.00 0.00 34.71 2.52
5061 6264 0.320771 TCTCAAAGGGAGCTTGCGAC 60.321 55.000 0.00 0.00 43.70 5.19
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 3.827898 GGAGTCGTGGAGCGGAGG 61.828 72.222 0.00 0.00 41.72 4.30
11 12 2.179517 GAGTGGAGTCGTGGAGCG 59.820 66.667 0.00 0.00 43.01 5.03
13 14 1.649390 CTCGGAGTGGAGTCGTGGAG 61.649 65.000 0.00 0.00 0.00 3.86
30 31 4.527583 CTGGCTCCCGCTGCTCTC 62.528 72.222 0.00 0.00 36.09 3.20
38 39 2.779506 AGTTTTTAACTCTGGCTCCCG 58.220 47.619 0.00 0.00 37.02 5.14
39 40 4.640647 CCATAGTTTTTAACTCTGGCTCCC 59.359 45.833 9.99 0.00 45.15 4.30
46 47 6.003950 TGCTTGCTCCATAGTTTTTAACTCT 58.996 36.000 0.00 0.00 41.77 3.24
57 58 5.615289 AGTACCTATTTGCTTGCTCCATAG 58.385 41.667 0.00 0.00 0.00 2.23
58 59 5.454755 GGAGTACCTATTTGCTTGCTCCATA 60.455 44.000 0.00 0.00 40.51 2.74
67 68 2.108168 TCTGCGGAGTACCTATTTGCT 58.892 47.619 3.10 0.00 0.00 3.91
114 115 2.745281 GCATTTAGTACCTGTTCGGCAA 59.255 45.455 0.00 0.00 35.61 4.52
124 125 6.292649 GCAAAACAAACCTTGCATTTAGTACC 60.293 38.462 2.07 0.00 45.81 3.34
134 135 1.528807 GCGTTGCAAAACAAACCTTGC 60.529 47.619 0.00 0.00 46.53 4.01
156 157 3.422417 ACATAGACGGAGATGTGAACG 57.578 47.619 0.00 0.00 34.98 3.95
167 168 6.183360 GGTGGACAAGATTAAAACATAGACGG 60.183 42.308 0.00 0.00 0.00 4.79
173 174 7.235399 AGGAATTGGTGGACAAGATTAAAACAT 59.765 33.333 0.00 0.00 43.48 2.71
209 210 5.124776 CCTAATGCACCTTACGATTTTGGAA 59.875 40.000 0.00 0.00 0.00 3.53
254 255 2.158667 ACTGTGGAGAACATTTTCCGGT 60.159 45.455 0.00 0.00 38.39 5.28
260 261 3.338249 CGATGGACTGTGGAGAACATTT 58.662 45.455 0.00 0.00 38.39 2.32
267 1252 2.887568 GCGCGATGGACTGTGGAG 60.888 66.667 12.10 0.00 0.00 3.86
273 1258 4.435436 TTCTGCGCGCGATGGACT 62.435 61.111 37.18 0.00 0.00 3.85
274 1259 4.210304 GTTCTGCGCGCGATGGAC 62.210 66.667 37.18 24.80 0.00 4.02
288 1273 1.411493 GCGTGTTCCTCGATCGGTTC 61.411 60.000 16.41 2.82 0.00 3.62
295 1280 1.007734 GTGACTGCGTGTTCCTCGA 60.008 57.895 0.00 0.00 0.00 4.04
296 1281 0.874175 TTGTGACTGCGTGTTCCTCG 60.874 55.000 0.00 0.00 0.00 4.63
297 1282 1.512926 ATTGTGACTGCGTGTTCCTC 58.487 50.000 0.00 0.00 0.00 3.71
298 1283 1.967319 AATTGTGACTGCGTGTTCCT 58.033 45.000 0.00 0.00 0.00 3.36
299 1284 3.551551 GTTAATTGTGACTGCGTGTTCC 58.448 45.455 0.00 0.00 0.00 3.62
310 1296 3.122278 GCACGCTAAGACGTTAATTGTGA 59.878 43.478 10.58 0.00 45.75 3.58
322 1308 1.301401 GTGGGTGTGCACGCTAAGA 60.301 57.895 28.09 8.49 43.67 2.10
373 1359 1.337354 GCTTAAGCCCCTCTCGCTATC 60.337 57.143 17.00 0.00 34.84 2.08
375 1361 0.686441 TGCTTAAGCCCCTCTCGCTA 60.686 55.000 24.30 0.00 41.18 4.26
381 1367 0.535797 ACGTACTGCTTAAGCCCCTC 59.464 55.000 24.30 11.44 41.18 4.30
394 1381 4.049546 TGTTTGCTGACAAGTACGTACT 57.950 40.909 22.45 22.45 37.04 2.73
395 1382 4.985044 ATGTTTGCTGACAAGTACGTAC 57.015 40.909 18.10 18.10 37.04 3.67
396 1383 6.869388 TGATTATGTTTGCTGACAAGTACGTA 59.131 34.615 0.00 0.00 37.04 3.57
397 1384 5.699001 TGATTATGTTTGCTGACAAGTACGT 59.301 36.000 0.00 0.00 37.04 3.57
398 1385 6.164408 TGATTATGTTTGCTGACAAGTACG 57.836 37.500 0.00 0.00 37.04 3.67
399 1386 8.970691 ATTTGATTATGTTTGCTGACAAGTAC 57.029 30.769 0.00 0.00 37.04 2.73
540 1530 5.368989 ACTGGTGAGTAAAACAAGAAGAGG 58.631 41.667 0.00 0.00 0.00 3.69
676 1675 1.976474 GGGAAATTGGTGCGCAGGA 60.976 57.895 12.22 0.00 0.00 3.86
703 1702 3.788766 CGCCTGAACCTTTCCGCG 61.789 66.667 0.00 0.00 39.77 6.46
706 1705 3.062466 GGCCGCCTGAACCTTTCC 61.062 66.667 0.71 0.00 0.00 3.13
818 1828 0.682532 AGCTGAGTGATCGGAGCTGA 60.683 55.000 0.00 0.00 40.31 4.26
938 1948 0.962489 GCGCTAGAGCTTGGATCCTA 59.038 55.000 14.23 4.17 39.32 2.94
939 1949 1.745264 GCGCTAGAGCTTGGATCCT 59.255 57.895 14.23 0.00 39.32 3.24
1153 2183 1.614525 TCCAGTGCAGCTCCCTGAT 60.615 57.895 2.98 0.00 41.77 2.90
1440 2470 2.693069 ACAGCTCATCAGTACACAAGC 58.307 47.619 0.00 0.00 0.00 4.01
1505 2536 0.542702 ACTTCCCCAGCACCAAATGG 60.543 55.000 0.00 0.00 42.17 3.16
1506 2537 1.818674 GTACTTCCCCAGCACCAAATG 59.181 52.381 0.00 0.00 0.00 2.32
1507 2538 1.427368 TGTACTTCCCCAGCACCAAAT 59.573 47.619 0.00 0.00 0.00 2.32
1508 2539 0.847373 TGTACTTCCCCAGCACCAAA 59.153 50.000 0.00 0.00 0.00 3.28
1509 2540 0.400213 CTGTACTTCCCCAGCACCAA 59.600 55.000 0.00 0.00 0.00 3.67
1510 2541 0.766674 ACTGTACTTCCCCAGCACCA 60.767 55.000 0.00 0.00 31.76 4.17
1511 2542 0.321653 CACTGTACTTCCCCAGCACC 60.322 60.000 0.00 0.00 31.76 5.01
1512 2543 0.685097 TCACTGTACTTCCCCAGCAC 59.315 55.000 0.00 0.00 31.76 4.40
1513 2544 1.656587 ATCACTGTACTTCCCCAGCA 58.343 50.000 0.00 0.00 31.76 4.41
1514 2545 2.789409 AATCACTGTACTTCCCCAGC 57.211 50.000 0.00 0.00 31.76 4.85
1515 2546 4.466370 TCACTAATCACTGTACTTCCCCAG 59.534 45.833 0.00 0.00 34.82 4.45
1516 2547 4.222145 GTCACTAATCACTGTACTTCCCCA 59.778 45.833 0.00 0.00 0.00 4.96
1517 2548 4.466726 AGTCACTAATCACTGTACTTCCCC 59.533 45.833 0.00 0.00 0.00 4.81
1518 2549 5.662674 AGTCACTAATCACTGTACTTCCC 57.337 43.478 0.00 0.00 0.00 3.97
1519 2550 6.267070 GCTAGTCACTAATCACTGTACTTCC 58.733 44.000 0.00 0.00 0.00 3.46
1520 2551 5.966503 CGCTAGTCACTAATCACTGTACTTC 59.033 44.000 0.00 0.00 0.00 3.01
1521 2552 5.646793 TCGCTAGTCACTAATCACTGTACTT 59.353 40.000 0.00 0.00 0.00 2.24
1522 2553 5.064962 GTCGCTAGTCACTAATCACTGTACT 59.935 44.000 0.00 0.00 0.00 2.73
1523 2554 5.264712 GTCGCTAGTCACTAATCACTGTAC 58.735 45.833 0.00 0.00 0.00 2.90
1524 2555 4.033702 CGTCGCTAGTCACTAATCACTGTA 59.966 45.833 0.00 0.00 0.00 2.74
1525 2556 3.181509 CGTCGCTAGTCACTAATCACTGT 60.182 47.826 0.00 0.00 0.00 3.55
1526 2557 3.063588 TCGTCGCTAGTCACTAATCACTG 59.936 47.826 0.00 0.00 0.00 3.66
1527 2558 3.268330 TCGTCGCTAGTCACTAATCACT 58.732 45.455 0.00 0.00 0.00 3.41
1528 2559 3.670311 TCGTCGCTAGTCACTAATCAC 57.330 47.619 0.00 0.00 0.00 3.06
1529 2560 3.181503 GGTTCGTCGCTAGTCACTAATCA 60.182 47.826 0.00 0.00 0.00 2.57
1530 2561 3.181503 TGGTTCGTCGCTAGTCACTAATC 60.182 47.826 0.00 0.00 0.00 1.75
1531 2562 2.751259 TGGTTCGTCGCTAGTCACTAAT 59.249 45.455 0.00 0.00 0.00 1.73
1532 2563 2.153645 TGGTTCGTCGCTAGTCACTAA 58.846 47.619 0.00 0.00 0.00 2.24
1533 2564 1.812235 TGGTTCGTCGCTAGTCACTA 58.188 50.000 0.00 0.00 0.00 2.74
1534 2565 1.174783 ATGGTTCGTCGCTAGTCACT 58.825 50.000 0.00 0.00 0.00 3.41
1535 2566 2.838386 TATGGTTCGTCGCTAGTCAC 57.162 50.000 0.00 0.00 0.00 3.67
1536 2567 2.032290 CGATATGGTTCGTCGCTAGTCA 60.032 50.000 0.00 0.00 34.46 3.41
1537 2568 2.222678 TCGATATGGTTCGTCGCTAGTC 59.777 50.000 0.00 0.00 40.03 2.59
1538 2569 2.032204 GTCGATATGGTTCGTCGCTAGT 60.032 50.000 0.00 0.00 40.03 2.57
1539 2570 2.572243 GTCGATATGGTTCGTCGCTAG 58.428 52.381 0.00 0.00 40.03 3.42
1540 2571 1.070376 CGTCGATATGGTTCGTCGCTA 60.070 52.381 0.00 0.00 41.86 4.26
1541 2572 0.316772 CGTCGATATGGTTCGTCGCT 60.317 55.000 0.00 0.00 41.86 4.93
1542 2573 2.122321 CGTCGATATGGTTCGTCGC 58.878 57.895 0.00 0.00 41.86 5.19
1544 2575 1.267732 ACGACGTCGATATGGTTCGTC 60.268 52.381 41.52 18.98 44.49 4.20
1545 2576 0.729116 ACGACGTCGATATGGTTCGT 59.271 50.000 41.52 15.25 43.02 3.85
1546 2577 1.383120 GACGACGTCGATATGGTTCG 58.617 55.000 41.52 14.55 43.02 3.95
1557 2588 1.121240 CAGGCATAATCGACGACGTC 58.879 55.000 18.04 18.04 40.69 4.34
1558 2589 0.454600 ACAGGCATAATCGACGACGT 59.545 50.000 0.00 0.00 40.69 4.34
1559 2590 0.846401 CACAGGCATAATCGACGACG 59.154 55.000 0.00 0.00 41.26 5.12
1560 2591 1.209128 CCACAGGCATAATCGACGAC 58.791 55.000 0.00 0.00 0.00 4.34
1561 2592 0.821517 ACCACAGGCATAATCGACGA 59.178 50.000 0.00 0.00 0.00 4.20
1562 2593 1.593006 GAACCACAGGCATAATCGACG 59.407 52.381 0.00 0.00 0.00 5.12
1563 2594 2.609459 CTGAACCACAGGCATAATCGAC 59.391 50.000 0.00 0.00 42.39 4.20
1564 2595 2.499693 TCTGAACCACAGGCATAATCGA 59.500 45.455 0.00 0.00 45.76 3.59
1565 2596 2.905075 TCTGAACCACAGGCATAATCG 58.095 47.619 0.00 0.00 45.76 3.34
1566 2597 4.999950 CCTATCTGAACCACAGGCATAATC 59.000 45.833 0.00 0.00 45.76 1.75
1567 2598 4.660303 TCCTATCTGAACCACAGGCATAAT 59.340 41.667 0.00 0.00 45.76 1.28
1568 2599 4.037222 TCCTATCTGAACCACAGGCATAA 58.963 43.478 0.00 0.00 45.76 1.90
1569 2600 3.653164 TCCTATCTGAACCACAGGCATA 58.347 45.455 0.00 0.00 45.76 3.14
1570 2601 2.481441 TCCTATCTGAACCACAGGCAT 58.519 47.619 0.00 0.00 45.76 4.40
1571 2602 1.951209 TCCTATCTGAACCACAGGCA 58.049 50.000 0.00 0.00 45.76 4.75
1572 2603 3.007398 CCTATCCTATCTGAACCACAGGC 59.993 52.174 0.00 0.00 45.76 4.85
1573 2604 3.007398 GCCTATCCTATCTGAACCACAGG 59.993 52.174 0.00 0.00 45.76 4.00
1574 2605 3.643320 TGCCTATCCTATCTGAACCACAG 59.357 47.826 0.00 0.00 46.97 3.66
1575 2606 3.653164 TGCCTATCCTATCTGAACCACA 58.347 45.455 0.00 0.00 0.00 4.17
1576 2607 4.899352 ATGCCTATCCTATCTGAACCAC 57.101 45.455 0.00 0.00 0.00 4.16
1577 2608 5.608437 AGAAATGCCTATCCTATCTGAACCA 59.392 40.000 0.00 0.00 0.00 3.67
1578 2609 6.120507 AGAAATGCCTATCCTATCTGAACC 57.879 41.667 0.00 0.00 0.00 3.62
1579 2610 6.367422 CGAAGAAATGCCTATCCTATCTGAAC 59.633 42.308 0.00 0.00 0.00 3.18
1580 2611 6.459066 CGAAGAAATGCCTATCCTATCTGAA 58.541 40.000 0.00 0.00 0.00 3.02
1581 2612 5.567623 GCGAAGAAATGCCTATCCTATCTGA 60.568 44.000 0.00 0.00 0.00 3.27
1582 2613 4.629200 GCGAAGAAATGCCTATCCTATCTG 59.371 45.833 0.00 0.00 0.00 2.90
1583 2614 4.530161 AGCGAAGAAATGCCTATCCTATCT 59.470 41.667 0.00 0.00 0.00 1.98
1584 2615 4.629200 CAGCGAAGAAATGCCTATCCTATC 59.371 45.833 0.00 0.00 0.00 2.08
1585 2616 4.573900 CAGCGAAGAAATGCCTATCCTAT 58.426 43.478 0.00 0.00 0.00 2.57
1586 2617 3.803715 GCAGCGAAGAAATGCCTATCCTA 60.804 47.826 0.00 0.00 33.81 2.94
1587 2618 2.843701 CAGCGAAGAAATGCCTATCCT 58.156 47.619 0.00 0.00 0.00 3.24
1588 2619 1.265365 GCAGCGAAGAAATGCCTATCC 59.735 52.381 0.00 0.00 33.81 2.59
1589 2620 2.216898 AGCAGCGAAGAAATGCCTATC 58.783 47.619 0.00 0.00 40.89 2.08
1590 2621 2.338577 AGCAGCGAAGAAATGCCTAT 57.661 45.000 0.00 0.00 40.89 2.57
1591 2622 2.979814 TAGCAGCGAAGAAATGCCTA 57.020 45.000 0.00 0.00 40.89 3.93
1592 2623 1.945394 CATAGCAGCGAAGAAATGCCT 59.055 47.619 0.00 0.00 40.89 4.75
1593 2624 1.598924 GCATAGCAGCGAAGAAATGCC 60.599 52.381 0.00 0.00 40.89 4.40
1594 2625 1.064505 TGCATAGCAGCGAAGAAATGC 59.935 47.619 0.00 0.00 40.03 3.56
1595 2626 2.353889 AGTGCATAGCAGCGAAGAAATG 59.646 45.455 0.00 0.00 40.08 2.32
1596 2627 2.636830 AGTGCATAGCAGCGAAGAAAT 58.363 42.857 0.00 0.00 40.08 2.17
1597 2628 2.099141 AGTGCATAGCAGCGAAGAAA 57.901 45.000 0.00 0.00 40.08 2.52
1598 2629 2.959507 TAGTGCATAGCAGCGAAGAA 57.040 45.000 0.00 0.00 40.08 2.52
1599 2630 2.747436 CATAGTGCATAGCAGCGAAGA 58.253 47.619 0.00 0.00 40.08 2.87
1600 2631 1.194098 GCATAGTGCATAGCAGCGAAG 59.806 52.381 0.00 0.00 44.26 3.79
1601 2632 1.220529 GCATAGTGCATAGCAGCGAA 58.779 50.000 0.00 0.00 44.26 4.70
1602 2633 2.904664 GCATAGTGCATAGCAGCGA 58.095 52.632 0.00 0.00 44.26 4.93
1612 2643 4.841443 TGATCATTTGGATGCATAGTGC 57.159 40.909 0.00 0.00 45.29 4.40
1613 2644 6.327279 ACATGATCATTTGGATGCATAGTG 57.673 37.500 5.16 0.00 36.00 2.74
1614 2645 7.174426 CACTACATGATCATTTGGATGCATAGT 59.826 37.037 11.70 2.77 36.00 2.12
1615 2646 7.527457 CACTACATGATCATTTGGATGCATAG 58.473 38.462 11.70 1.30 36.00 2.23
1616 2647 6.072342 GCACTACATGATCATTTGGATGCATA 60.072 38.462 18.59 0.00 36.00 3.14
1617 2648 5.278808 GCACTACATGATCATTTGGATGCAT 60.279 40.000 18.59 0.00 36.00 3.96
1618 2649 4.037089 GCACTACATGATCATTTGGATGCA 59.963 41.667 18.59 0.00 36.00 3.96
1619 2650 4.037089 TGCACTACATGATCATTTGGATGC 59.963 41.667 11.70 15.30 36.00 3.91
1620 2651 5.506815 GGTGCACTACATGATCATTTGGATG 60.507 44.000 17.98 7.52 36.00 3.51
1621 2652 4.581824 GGTGCACTACATGATCATTTGGAT 59.418 41.667 17.98 0.00 39.53 3.41
1622 2653 3.947196 GGTGCACTACATGATCATTTGGA 59.053 43.478 17.98 3.40 0.00 3.53
1623 2654 3.695556 TGGTGCACTACATGATCATTTGG 59.304 43.478 17.98 4.41 0.00 3.28
1624 2655 4.968812 TGGTGCACTACATGATCATTTG 57.031 40.909 17.98 0.00 0.00 2.32
1625 2656 5.981088 TTTGGTGCACTACATGATCATTT 57.019 34.783 17.98 1.90 0.00 2.32
1626 2657 5.220912 CGATTTGGTGCACTACATGATCATT 60.221 40.000 17.98 0.66 0.00 2.57
1627 2658 4.274214 CGATTTGGTGCACTACATGATCAT 59.726 41.667 17.98 1.18 0.00 2.45
1628 2659 3.622612 CGATTTGGTGCACTACATGATCA 59.377 43.478 17.98 0.00 0.00 2.92
1629 2660 3.002656 CCGATTTGGTGCACTACATGATC 59.997 47.826 17.98 11.86 0.00 2.92
1630 2661 2.945008 CCGATTTGGTGCACTACATGAT 59.055 45.455 17.98 4.71 0.00 2.45
1631 2662 2.355197 CCGATTTGGTGCACTACATGA 58.645 47.619 17.98 0.00 0.00 3.07
1632 2663 1.202177 GCCGATTTGGTGCACTACATG 60.202 52.381 17.98 4.56 41.21 3.21
1633 2664 1.094785 GCCGATTTGGTGCACTACAT 58.905 50.000 17.98 9.48 41.21 2.29
1634 2665 0.250510 TGCCGATTTGGTGCACTACA 60.251 50.000 17.98 3.66 41.21 2.74
1635 2666 0.878416 TTGCCGATTTGGTGCACTAC 59.122 50.000 17.98 0.83 41.21 2.73
1636 2667 0.878416 GTTGCCGATTTGGTGCACTA 59.122 50.000 17.98 8.10 41.21 2.74
1637 2668 1.106351 TGTTGCCGATTTGGTGCACT 61.106 50.000 17.98 0.00 41.21 4.40
1638 2669 0.249238 TTGTTGCCGATTTGGTGCAC 60.249 50.000 8.80 8.80 41.21 4.57
1639 2670 0.249238 GTTGTTGCCGATTTGGTGCA 60.249 50.000 0.00 0.00 41.21 4.57
1640 2671 0.031994 AGTTGTTGCCGATTTGGTGC 59.968 50.000 0.00 0.00 41.21 5.01
1641 2672 3.440173 AGATAGTTGTTGCCGATTTGGTG 59.560 43.478 0.00 0.00 41.21 4.17
1642 2673 3.440173 CAGATAGTTGTTGCCGATTTGGT 59.560 43.478 0.00 0.00 41.21 3.67
1643 2674 3.689161 TCAGATAGTTGTTGCCGATTTGG 59.311 43.478 0.00 0.00 42.50 3.28
1644 2675 4.944962 TCAGATAGTTGTTGCCGATTTG 57.055 40.909 0.00 0.00 0.00 2.32
1645 2676 6.071952 ACAATTCAGATAGTTGTTGCCGATTT 60.072 34.615 0.00 0.00 32.53 2.17
1646 2677 5.415701 ACAATTCAGATAGTTGTTGCCGATT 59.584 36.000 0.00 0.00 32.53 3.34
1647 2678 4.943705 ACAATTCAGATAGTTGTTGCCGAT 59.056 37.500 0.00 0.00 32.53 4.18
1648 2679 4.323417 ACAATTCAGATAGTTGTTGCCGA 58.677 39.130 0.00 0.00 32.53 5.54
1649 2680 4.685169 ACAATTCAGATAGTTGTTGCCG 57.315 40.909 0.00 0.00 32.53 5.69
1650 2681 6.595716 AGTCTACAATTCAGATAGTTGTTGCC 59.404 38.462 0.00 0.00 37.30 4.52
1651 2682 7.602517 AGTCTACAATTCAGATAGTTGTTGC 57.397 36.000 0.00 0.00 37.30 4.17
1652 2683 8.993121 ACAAGTCTACAATTCAGATAGTTGTTG 58.007 33.333 0.00 0.00 37.30 3.33
1653 2684 8.993121 CACAAGTCTACAATTCAGATAGTTGTT 58.007 33.333 0.00 0.00 37.30 2.83
1654 2685 7.604164 CCACAAGTCTACAATTCAGATAGTTGT 59.396 37.037 0.00 0.00 39.26 3.32
1655 2686 7.604164 ACCACAAGTCTACAATTCAGATAGTTG 59.396 37.037 0.00 0.00 0.00 3.16
1656 2687 7.680730 ACCACAAGTCTACAATTCAGATAGTT 58.319 34.615 0.00 0.00 0.00 2.24
1657 2688 7.246171 ACCACAAGTCTACAATTCAGATAGT 57.754 36.000 0.00 0.00 0.00 2.12
1658 2689 8.470805 ACTACCACAAGTCTACAATTCAGATAG 58.529 37.037 0.00 0.00 0.00 2.08
1659 2690 8.251026 CACTACCACAAGTCTACAATTCAGATA 58.749 37.037 0.00 0.00 0.00 1.98
1660 2691 7.099764 CACTACCACAAGTCTACAATTCAGAT 58.900 38.462 0.00 0.00 0.00 2.90
1661 2692 6.041637 ACACTACCACAAGTCTACAATTCAGA 59.958 38.462 0.00 0.00 0.00 3.27
1662 2693 6.223852 ACACTACCACAAGTCTACAATTCAG 58.776 40.000 0.00 0.00 0.00 3.02
1663 2694 6.169557 ACACTACCACAAGTCTACAATTCA 57.830 37.500 0.00 0.00 0.00 2.57
1664 2695 7.225931 TGAAACACTACCACAAGTCTACAATTC 59.774 37.037 0.00 0.00 0.00 2.17
1665 2696 7.051623 TGAAACACTACCACAAGTCTACAATT 58.948 34.615 0.00 0.00 0.00 2.32
1666 2697 6.588204 TGAAACACTACCACAAGTCTACAAT 58.412 36.000 0.00 0.00 0.00 2.71
1667 2698 5.979993 TGAAACACTACCACAAGTCTACAA 58.020 37.500 0.00 0.00 0.00 2.41
1668 2699 5.597806 CTGAAACACTACCACAAGTCTACA 58.402 41.667 0.00 0.00 0.00 2.74
1669 2700 4.448060 GCTGAAACACTACCACAAGTCTAC 59.552 45.833 0.00 0.00 0.00 2.59
1670 2701 4.100344 TGCTGAAACACTACCACAAGTCTA 59.900 41.667 0.00 0.00 0.00 2.59
1671 2702 3.118408 TGCTGAAACACTACCACAAGTCT 60.118 43.478 0.00 0.00 0.00 3.24
1672 2703 3.202906 TGCTGAAACACTACCACAAGTC 58.797 45.455 0.00 0.00 0.00 3.01
1673 2704 3.275617 TGCTGAAACACTACCACAAGT 57.724 42.857 0.00 0.00 0.00 3.16
1674 2705 4.836125 AATGCTGAAACACTACCACAAG 57.164 40.909 0.00 0.00 0.00 3.16
1675 2706 4.202101 CCAAATGCTGAAACACTACCACAA 60.202 41.667 0.00 0.00 0.00 3.33
1676 2707 3.317711 CCAAATGCTGAAACACTACCACA 59.682 43.478 0.00 0.00 0.00 4.17
1677 2708 3.317993 ACCAAATGCTGAAACACTACCAC 59.682 43.478 0.00 0.00 0.00 4.16
1678 2709 3.317711 CACCAAATGCTGAAACACTACCA 59.682 43.478 0.00 0.00 0.00 3.25
1679 2710 3.900941 CACCAAATGCTGAAACACTACC 58.099 45.455 0.00 0.00 0.00 3.18
1704 2735 4.051922 GGTCACTAATCACTATGCTTCGG 58.948 47.826 0.00 0.00 0.00 4.30
1705 2736 4.682787 TGGTCACTAATCACTATGCTTCG 58.317 43.478 0.00 0.00 0.00 3.79
1710 2741 6.809869 TCATCACTGGTCACTAATCACTATG 58.190 40.000 0.00 0.00 0.00 2.23
1732 2763 0.589223 GACGCCGTCAATTTGGTTCA 59.411 50.000 13.23 0.00 32.09 3.18
1742 2773 1.590525 GGCATAATCGACGCCGTCA 60.591 57.895 18.40 4.96 35.79 4.35
1801 2838 7.416777 GGCTCATCATCATTCGGATACATAGTA 60.417 40.741 0.00 0.00 33.95 1.82
1808 2845 3.324556 TGTGGCTCATCATCATTCGGATA 59.675 43.478 0.00 0.00 33.95 2.59
1911 2949 8.879759 TCAAGAGAACGGCAGTAAAAATAATAG 58.120 33.333 0.00 0.00 0.00 1.73
1913 2951 7.681939 TCAAGAGAACGGCAGTAAAAATAAT 57.318 32.000 0.00 0.00 0.00 1.28
1976 3119 4.719773 AGGGAGGGGGCAAAATTAATAAAC 59.280 41.667 0.00 0.00 0.00 2.01
2006 3149 4.446167 CCCATTATGCCTGTGTATTCCTCA 60.446 45.833 0.00 0.00 0.00 3.86
2039 3182 5.771469 CTGTGGAGAGAGACTATAAGCATG 58.229 45.833 0.00 0.00 0.00 4.06
2285 3428 9.664332 AATATTGAGTATTATGAGCTGGTGATC 57.336 33.333 0.00 0.00 31.22 2.92
2306 3449 7.630082 TGGGAAGTACAGAGCACTAAAATATT 58.370 34.615 0.00 0.00 0.00 1.28
2316 3459 4.019411 TCAATGATTGGGAAGTACAGAGCA 60.019 41.667 5.20 0.00 0.00 4.26
2396 3539 7.234577 TGCATAACCAGAGTGTATATGTGGATA 59.765 37.037 0.00 0.00 32.26 2.59
2431 3574 0.179034 GGCCTCTGCATCCGAAAGAT 60.179 55.000 0.00 0.00 40.13 2.40
2432 3575 1.221840 GGCCTCTGCATCCGAAAGA 59.778 57.895 0.00 0.00 40.13 2.52
2433 3576 2.176273 CGGCCTCTGCATCCGAAAG 61.176 63.158 0.00 0.00 45.53 2.62
2434 3577 2.125147 CGGCCTCTGCATCCGAAA 60.125 61.111 0.00 0.00 45.53 3.46
2435 3578 4.161295 CCGGCCTCTGCATCCGAA 62.161 66.667 15.42 0.00 45.53 4.30
2443 3586 3.866582 GATCACCCCCGGCCTCTG 61.867 72.222 0.00 0.00 0.00 3.35
2454 3597 2.319025 TTTGGAAAAGGGGGATCACC 57.681 50.000 5.01 5.01 39.11 4.02
2476 3619 9.515226 TTGGTGTACTTATTCTCTATGCTTTTT 57.485 29.630 0.00 0.00 0.00 1.94
2477 3620 9.167311 CTTGGTGTACTTATTCTCTATGCTTTT 57.833 33.333 0.00 0.00 0.00 2.27
2478 3621 7.281100 GCTTGGTGTACTTATTCTCTATGCTTT 59.719 37.037 0.00 0.00 0.00 3.51
2479 3622 6.763610 GCTTGGTGTACTTATTCTCTATGCTT 59.236 38.462 0.00 0.00 0.00 3.91
2480 3623 6.098982 AGCTTGGTGTACTTATTCTCTATGCT 59.901 38.462 0.00 0.00 0.00 3.79
2481 3624 6.284459 AGCTTGGTGTACTTATTCTCTATGC 58.716 40.000 0.00 0.00 0.00 3.14
2482 3625 7.766278 ACAAGCTTGGTGTACTTATTCTCTATG 59.234 37.037 29.18 0.00 0.00 2.23
2483 3626 7.766278 CACAAGCTTGGTGTACTTATTCTCTAT 59.234 37.037 29.18 0.00 0.00 1.98
2484 3627 7.097192 CACAAGCTTGGTGTACTTATTCTCTA 58.903 38.462 29.18 0.00 0.00 2.43
2485 3628 5.934625 CACAAGCTTGGTGTACTTATTCTCT 59.065 40.000 29.18 0.25 0.00 3.10
2486 3629 5.390991 GCACAAGCTTGGTGTACTTATTCTC 60.391 44.000 29.18 5.99 38.51 2.87
2544 3687 9.847224 CCAGTACCATCCAAAGTAGTAATAAAT 57.153 33.333 0.00 0.00 0.00 1.40
2545 3688 8.828751 ACCAGTACCATCCAAAGTAGTAATAAA 58.171 33.333 0.00 0.00 0.00 1.40
2760 3903 6.071784 TCAGACAGAAAATTTAGTGCATGCAT 60.072 34.615 25.64 15.04 0.00 3.96
3023 4166 5.277857 GCTACCCCAGCGACATATATTAT 57.722 43.478 0.00 0.00 41.37 1.28
3078 4221 3.157750 ACGAACTACTCCCTCTGTTCT 57.842 47.619 0.00 0.00 37.31 3.01
3155 4314 2.689983 CAGATGAATTTTCCCCGGGAAG 59.310 50.000 26.32 6.14 43.06 3.46
3263 4424 6.363577 TGGAACATCTCGAAAAGATATTGC 57.636 37.500 0.00 0.00 43.13 3.56
3452 4614 1.216178 GCATCAATGTGCCCACACC 59.784 57.895 2.82 0.00 46.86 4.16
3564 4742 1.630878 ACTCCAACAAGAGATCCCACC 59.369 52.381 0.00 0.00 37.33 4.61
3627 4805 3.786048 GCAACTGACTTGAACAAAGAACG 59.214 43.478 0.00 0.00 39.38 3.95
3681 4859 6.721571 TTTAGATTTAGACGAAGCACCAAG 57.278 37.500 0.00 0.00 0.00 3.61
3687 4865 6.370718 TCCCAAGTTTTAGATTTAGACGAAGC 59.629 38.462 0.00 0.00 0.00 3.86
3771 4949 3.420893 CACCAAAAGAGGCATCCACTTA 58.579 45.455 0.00 0.00 33.54 2.24
3814 4992 4.783621 TGTGCCCTCGATGCCAGC 62.784 66.667 4.80 0.00 0.00 4.85
3955 5133 2.547211 GCCTCATCACATTTCGGATCAG 59.453 50.000 0.00 0.00 0.00 2.90
4045 5223 2.862536 CACCGTCATACTCATTCAGCAG 59.137 50.000 0.00 0.00 0.00 4.24
4051 5229 2.159043 CCTCAGCACCGTCATACTCATT 60.159 50.000 0.00 0.00 0.00 2.57
4052 5230 1.410517 CCTCAGCACCGTCATACTCAT 59.589 52.381 0.00 0.00 0.00 2.90
4200 5378 1.077716 GCCCCTGTTGGCGAGTAAT 60.078 57.895 0.00 0.00 42.54 1.89
4283 5463 9.509855 GACAACTAAAAACAACACAATGTGATA 57.490 29.630 21.34 1.11 36.96 2.15
4309 5489 7.837202 AAAATGAATGAATACAACAGCATGG 57.163 32.000 0.00 0.00 43.62 3.66
4374 5556 4.054780 TCGGAGGGAGTATCAAATTTCG 57.945 45.455 0.00 0.00 36.25 3.46
4445 5627 5.261209 AGATCAGATAACACAGTGAGAGC 57.739 43.478 7.81 0.00 0.00 4.09
4476 5658 7.701539 TGCAATGAAGGTAAATCATACAACT 57.298 32.000 0.00 0.00 36.53 3.16
4484 5666 6.681777 ACAAGACTTGCAATGAAGGTAAATC 58.318 36.000 15.24 0.00 0.00 2.17
4495 5677 2.094258 CGTCGCATACAAGACTTGCAAT 59.906 45.455 15.24 6.47 36.15 3.56
4551 5733 7.839705 AGGGAGTAGATTATGAAGTGTGAACTA 59.160 37.037 0.00 0.00 0.00 2.24
4561 5743 4.150359 GGACGGAGGGAGTAGATTATGAA 58.850 47.826 0.00 0.00 0.00 2.57
4573 5755 0.330267 GGAATTTTGGGACGGAGGGA 59.670 55.000 0.00 0.00 0.00 4.20
4574 5756 0.331616 AGGAATTTTGGGACGGAGGG 59.668 55.000 0.00 0.00 0.00 4.30
4575 5757 1.271926 ACAGGAATTTTGGGACGGAGG 60.272 52.381 0.00 0.00 0.00 4.30
4576 5758 2.084546 GACAGGAATTTTGGGACGGAG 58.915 52.381 0.00 0.00 0.00 4.63
4577 5759 1.702957 AGACAGGAATTTTGGGACGGA 59.297 47.619 0.00 0.00 0.00 4.69
4578 5760 2.200373 AGACAGGAATTTTGGGACGG 57.800 50.000 0.00 0.00 0.00 4.79
4579 5761 5.699097 TTTAAGACAGGAATTTTGGGACG 57.301 39.130 0.00 0.00 0.00 4.79
4580 5762 7.931407 ACAAATTTAAGACAGGAATTTTGGGAC 59.069 33.333 0.00 0.00 33.39 4.46
4581 5763 8.028652 ACAAATTTAAGACAGGAATTTTGGGA 57.971 30.769 0.00 0.00 33.39 4.37
4582 5764 8.150296 AGACAAATTTAAGACAGGAATTTTGGG 58.850 33.333 0.00 0.00 33.39 4.12
4589 5771 9.582431 CGTATCTAGACAAATTTAAGACAGGAA 57.418 33.333 0.00 0.00 0.00 3.36
4590 5772 7.705325 GCGTATCTAGACAAATTTAAGACAGGA 59.295 37.037 0.00 0.00 0.00 3.86
4591 5773 7.042658 GGCGTATCTAGACAAATTTAAGACAGG 60.043 40.741 0.00 0.00 0.00 4.00
4592 5774 7.306051 CGGCGTATCTAGACAAATTTAAGACAG 60.306 40.741 0.00 0.00 0.00 3.51
4593 5775 6.474427 CGGCGTATCTAGACAAATTTAAGACA 59.526 38.462 0.00 0.00 0.00 3.41
4594 5776 6.474751 ACGGCGTATCTAGACAAATTTAAGAC 59.525 38.462 12.58 0.00 0.00 3.01
4595 5777 6.567050 ACGGCGTATCTAGACAAATTTAAGA 58.433 36.000 12.58 0.00 0.00 2.10
4596 5778 6.823678 ACGGCGTATCTAGACAAATTTAAG 57.176 37.500 12.58 0.00 0.00 1.85
4597 5779 8.511465 GATACGGCGTATCTAGACAAATTTAA 57.489 34.615 38.88 10.79 40.97 1.52
4610 5792 8.511465 TTAAATTTGTCTAGATACGGCGTATC 57.489 34.615 39.25 39.25 43.52 2.24
4611 5793 8.355169 TCTTAAATTTGTCTAGATACGGCGTAT 58.645 33.333 30.68 30.68 0.00 3.06
4612 5794 7.706159 TCTTAAATTTGTCTAGATACGGCGTA 58.294 34.615 23.25 23.25 0.00 4.42
4613 5795 6.567050 TCTTAAATTTGTCTAGATACGGCGT 58.433 36.000 19.64 19.64 0.00 5.68
4614 5796 7.639162 ATCTTAAATTTGTCTAGATACGGCG 57.361 36.000 4.80 4.80 0.00 6.46
4615 5797 9.141400 CCTATCTTAAATTTGTCTAGATACGGC 57.859 37.037 0.00 0.00 0.00 5.68
4624 5806 9.025041 CCCAAAACTCCTATCTTAAATTTGTCT 57.975 33.333 0.00 0.00 0.00 3.41
4625 5807 9.020731 TCCCAAAACTCCTATCTTAAATTTGTC 57.979 33.333 0.00 0.00 0.00 3.18
4626 5808 8.803235 GTCCCAAAACTCCTATCTTAAATTTGT 58.197 33.333 0.00 0.00 0.00 2.83
4627 5809 7.968405 CGTCCCAAAACTCCTATCTTAAATTTG 59.032 37.037 0.00 0.00 0.00 2.32
4628 5810 7.122204 CCGTCCCAAAACTCCTATCTTAAATTT 59.878 37.037 0.00 0.00 0.00 1.82
4629 5811 6.602009 CCGTCCCAAAACTCCTATCTTAAATT 59.398 38.462 0.00 0.00 0.00 1.82
4630 5812 6.069847 TCCGTCCCAAAACTCCTATCTTAAAT 60.070 38.462 0.00 0.00 0.00 1.40
4631 5813 5.248934 TCCGTCCCAAAACTCCTATCTTAAA 59.751 40.000 0.00 0.00 0.00 1.52
4632 5814 4.778958 TCCGTCCCAAAACTCCTATCTTAA 59.221 41.667 0.00 0.00 0.00 1.85
4633 5815 4.355549 TCCGTCCCAAAACTCCTATCTTA 58.644 43.478 0.00 0.00 0.00 2.10
4634 5816 3.178865 TCCGTCCCAAAACTCCTATCTT 58.821 45.455 0.00 0.00 0.00 2.40
4635 5817 2.766828 CTCCGTCCCAAAACTCCTATCT 59.233 50.000 0.00 0.00 0.00 1.98
4636 5818 2.500504 ACTCCGTCCCAAAACTCCTATC 59.499 50.000 0.00 0.00 0.00 2.08
4637 5819 2.236395 CACTCCGTCCCAAAACTCCTAT 59.764 50.000 0.00 0.00 0.00 2.57
4638 5820 1.621814 CACTCCGTCCCAAAACTCCTA 59.378 52.381 0.00 0.00 0.00 2.94
4639 5821 0.396811 CACTCCGTCCCAAAACTCCT 59.603 55.000 0.00 0.00 0.00 3.69
4640 5822 0.395312 TCACTCCGTCCCAAAACTCC 59.605 55.000 0.00 0.00 0.00 3.85
4641 5823 1.070289 ACTCACTCCGTCCCAAAACTC 59.930 52.381 0.00 0.00 0.00 3.01
4642 5824 1.129058 ACTCACTCCGTCCCAAAACT 58.871 50.000 0.00 0.00 0.00 2.66
4643 5825 2.224113 TGTACTCACTCCGTCCCAAAAC 60.224 50.000 0.00 0.00 0.00 2.43
4644 5826 2.040939 TGTACTCACTCCGTCCCAAAA 58.959 47.619 0.00 0.00 0.00 2.44
4645 5827 1.707106 TGTACTCACTCCGTCCCAAA 58.293 50.000 0.00 0.00 0.00 3.28
4646 5828 1.548719 CATGTACTCACTCCGTCCCAA 59.451 52.381 0.00 0.00 0.00 4.12
4647 5829 1.182667 CATGTACTCACTCCGTCCCA 58.817 55.000 0.00 0.00 0.00 4.37
4648 5830 1.471119 TCATGTACTCACTCCGTCCC 58.529 55.000 0.00 0.00 0.00 4.46
4649 5831 3.802948 AATCATGTACTCACTCCGTCC 57.197 47.619 0.00 0.00 0.00 4.79
4650 5832 4.744570 TCAAATCATGTACTCACTCCGTC 58.255 43.478 0.00 0.00 0.00 4.79
4651 5833 4.748892 CTCAAATCATGTACTCACTCCGT 58.251 43.478 0.00 0.00 0.00 4.69
4652 5834 3.553511 GCTCAAATCATGTACTCACTCCG 59.446 47.826 0.00 0.00 0.00 4.63
4653 5835 4.764172 AGCTCAAATCATGTACTCACTCC 58.236 43.478 0.00 0.00 0.00 3.85
4654 5836 5.659463 AGAGCTCAAATCATGTACTCACTC 58.341 41.667 17.77 0.00 35.71 3.51
4655 5837 5.186603 TGAGAGCTCAAATCATGTACTCACT 59.813 40.000 17.77 0.00 36.53 3.41
4656 5838 5.414360 TGAGAGCTCAAATCATGTACTCAC 58.586 41.667 17.77 0.00 36.53 3.51
4657 5839 5.665916 TGAGAGCTCAAATCATGTACTCA 57.334 39.130 17.77 3.05 36.53 3.41
4890 6074 0.040058 TTTGTGAGGCATGGCATCCT 59.960 50.000 22.64 15.47 38.67 3.24
5004 6207 3.626930 AGACGGTCTCTCTATTTCTGCT 58.373 45.455 4.45 0.00 0.00 4.24
5007 6210 4.166531 AGGGTAGACGGTCTCTCTATTTCT 59.833 45.833 15.05 0.18 0.00 2.52
5028 6231 6.006449 TCCCTTTGAGAATTCTTCAAGAAGG 58.994 40.000 21.13 20.07 37.69 3.46
5029 6232 6.349197 GCTCCCTTTGAGAATTCTTCAAGAAG 60.349 42.308 21.13 18.32 44.42 2.85
5034 6237 4.647564 AGCTCCCTTTGAGAATTCTTCA 57.352 40.909 9.87 6.47 44.42 3.02
5061 6264 1.995484 CATATCCATAAGAGCACGCCG 59.005 52.381 0.00 0.00 0.00 6.46
5094 6298 5.874897 ATATGGTCACCCAAATTTCATGG 57.125 39.130 0.00 0.00 46.04 3.66
5124 6328 7.461182 TTCTCGGGATAAAAACATTGTGAAT 57.539 32.000 0.00 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.