AutoCloner

Multiple sequence alignment - TraesCS7D01G153100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS7D01G153100	chr7D	100.000	3315	0	0	1	3315	101556628	101559942	0.000000e+00	6122.0
1	TraesCS7D01G153100	chr7D	89.773	88	9	0	1215	1302	101557797	101557884	2.700000e-21	113.0
2	TraesCS7D01G153100	chr7D	89.773	88	9	0	1170	1257	101557842	101557929	2.700000e-21	113.0
3	TraesCS7D01G153100	chr7D	87.143	70	9	0	1294	1363	101557846	101557915	2.740000e-11	80.5
4	TraesCS7D01G153100	chr7D	87.143	70	9	0	1219	1288	101557921	101557990	2.740000e-11	80.5
5	TraesCS7D01G153100	chr6A	91.347	1514	73	27	337	1832	74109128	74107655	0.000000e+00	2017.0
6	TraesCS7D01G153100	chr6A	92.384	1405	49	19	1821	3220	74107295	74105944	0.000000e+00	1949.0
7	TraesCS7D01G153100	chr6A	96.853	286	6	3	1	283	74109628	74109343	2.990000e-130	475.0
8	TraesCS7D01G153100	chr6A	92.982	114	8	0	1175	1288	74108241	74108128	2.050000e-37	167.0
9	TraesCS7D01G153100	chr7B	88.039	1530	102	36	303	1817	58716056	58717519	0.000000e+00	1736.0
10	TraesCS7D01G153100	chr7B	92.432	555	34	4	2768	3315	58720367	58720920	0.000000e+00	785.0
11	TraesCS7D01G153100	chr7B	85.430	302	33	6	2171	2471	58717808	58718099	1.490000e-78	303.0
12	TraesCS7D01G153100	chr7B	79.389	262	36	14	2512	2759	198397114	198397371	5.690000e-38	169.0
13	TraesCS7D01G153100	chr7B	88.406	69	8	0	1294	1362	58716944	58717012	2.120000e-12	84.2
14	TraesCS7D01G153100	chr7A	87.413	1573	113	33	308	1834	105243645	105245178	0.000000e+00	1729.0
15	TraesCS7D01G153100	chr7A	88.031	518	35	5	2784	3275	105264840	105265356	3.680000e-164	588.0
16	TraesCS7D01G153100	chr7A	86.866	335	25	12	2189	2517	105247384	105247705	1.130000e-94	357.0
17	TraesCS7D01G153100	chr7A	91.597	119	10	0	1170	1288	105244581	105244699	7.360000e-37	165.0
18	TraesCS7D01G153100	chr6B	81.395	258	38	9	2509	2760	290638555	290638302	5.610000e-48	202.0
19	TraesCS7D01G153100	chr6B	81.467	259	36	10	2509	2760	290666394	290666141	5.610000e-48	202.0
20	TraesCS7D01G153100	chr6B	80.695	259	38	10	2509	2760	290606161	290605908	1.210000e-44	191.0
21	TraesCS7D01G153100	chr4A	91.304	138	12	0	2613	2750	619439150	619439013	4.370000e-44	189.0
22	TraesCS7D01G153100	chr3B	89.404	151	15	1	2613	2762	834340	834490	4.370000e-44	189.0
23	TraesCS7D01G153100	chr3B	79.528	254	40	10	2510	2755	561233894	561233645	1.580000e-38	171.0
24	TraesCS7D01G153100	chr2A	89.865	148	14	1	2613	2759	754185037	754185184	4.370000e-44	189.0
25	TraesCS7D01G153100	chr2A	90.278	144	13	1	2613	2755	118247878	118247735	1.570000e-43	187.0
26	TraesCS7D01G153100	chr1A	82.222	225	27	7	2514	2736	122307215	122307428	7.310000e-42	182.0
27	TraesCS7D01G153100	chr2D	84.354	147	14	3	1	138	463909829	463909975	5.770000e-28	135.0
28	TraesCS7D01G153100	chr2D	84.821	112	15	2	2509	2618	591362768	591362879	9.720000e-21	111.0
29	TraesCS7D01G153100	chr5D	85.600	125	14	3	2512	2634	111788747	111788625	9.650000e-26	128.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS7D01G153100	chr7D	101556628	101559942	3314	False	1301.800000	6122	90.766400	1	3315	5	chr7D.!!$F1	3314
1	TraesCS7D01G153100	chr6A	74105944	74109628	3684	True	1152.000000	2017	93.391500	1	3220	4	chr6A.!!$R1	3219
2	TraesCS7D01G153100	chr7B	58716056	58720920	4864	False	727.050000	1736	88.576750	303	3315	4	chr7B.!!$F2	3012
3	TraesCS7D01G153100	chr7A	105243645	105247705	4060	False	750.333333	1729	88.625333	308	2517	3	chr7A.!!$F2	2209
4	TraesCS7D01G153100	chr7A	105264840	105265356	516	False	588.000000	588	88.031000	2784	3275	1	chr7A.!!$F1	491

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
725	900	0.179205	GCATGCAGACAAGCTTCGAC	60.179	55.0	14.21	0.0	37.52	4.2	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2366	4977	0.395586	AACAAAGCACTGGTGGCTGA	60.396	50.0	2.84	0.0	41.66	4.26	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
49	50	4.967442	TGTTCATCATCTCCTTCCTCTGAT	59.033	41.667	0.00	0.00	0.00	2.90
111	113	9.398538	TGTAATCAGTGAATGAATGATGAATCA	57.601	29.630	0.00	0.00	42.53	2.57
195	197	3.472652	GGTGTGATCCTTTGTGTGTGTA	58.527	45.455	0.00	0.00	0.00	2.90
201	203	5.008613	GTGATCCTTTGTGTGTGTATGTGTT	59.991	40.000	0.00	0.00	0.00	3.32
234	238	8.840321	GGTTGTATGCATCTTAGTTATTCACAT	58.160	33.333	0.19	0.00	0.00	3.21
236	240	8.962884	TGTATGCATCTTAGTTATTCACATGT	57.037	30.769	0.19	0.00	0.00	3.21
368	533	2.229784	GCTGGTTCCAATTTCAGTGGAG	59.770	50.000	0.00	0.00	45.79	3.86
725	900	0.179205	GCATGCAGACAAGCTTCGAC	60.179	55.000	14.21	0.00	37.52	4.20
822	1002	3.664107	AGTGCGTTCAGAATGTATGTGT	58.336	40.909	4.25	0.00	37.40	3.72
823	1003	3.679980	AGTGCGTTCAGAATGTATGTGTC	59.320	43.478	4.25	0.00	37.40	3.67
886	1072	1.067283	AGTGAAGCAGTGATCGGTCTG	60.067	52.381	0.00	7.65	35.12	3.51
887	1073	0.969149	TGAAGCAGTGATCGGTCTGT	59.031	50.000	0.00	0.00	34.57	3.41
974	1160	1.512926	CAAGAAACACCTGAGGGACG	58.487	55.000	2.38	0.00	36.25	4.79
1028	1221	1.507174	CTCCCCACGAGAACGAGAC	59.493	63.158	0.00	0.00	41.63	3.36
1090	1285	1.622607	CCTTCCTCGGCACCATACCA	61.623	60.000	0.00	0.00	0.00	3.25
1316	1538	1.663702	GTGGACACGAAGACGGTGG	60.664	63.158	0.00	0.00	44.46	4.61
1503	1734	2.270434	TGCTAACCAATCTCCTCCCT	57.730	50.000	0.00	0.00	0.00	4.20
1809	2041	3.693085	AGACCAACACATACTCGTCGTAT	59.307	43.478	0.00	0.00	39.39	3.06
1841	2444	1.299926	GCTGTACATACTCCGCCCG	60.300	63.158	0.00	0.00	0.00	6.13
1946	2549	4.829064	TGAGACAAATTTTTCAGGACGG	57.171	40.909	7.08	0.00	0.00	4.79
2147	3910	9.706691	TCAATTTATCTTTCCTAGCCGTATAAG	57.293	33.333	0.00	0.00	0.00	1.73
2175	4776	7.707624	AACATAAGGGGTCATATTATGCATG	57.292	36.000	10.16	0.00	39.45	4.06
2181	4782	4.400251	GGGGTCATATTATGCATGTGATGG	59.600	45.833	10.16	0.00	35.62	3.51
2190	4791	7.870509	ATTATGCATGTGATGGATATGGTAC	57.129	36.000	10.16	0.00	42.07	3.34
2330	4931	6.426937	AGCAATCTGAAACAACTACGTACATT	59.573	34.615	0.00	0.00	0.00	2.71
2331	4932	7.601130	AGCAATCTGAAACAACTACGTACATTA	59.399	33.333	0.00	0.00	0.00	1.90
2332	4933	7.898309	GCAATCTGAAACAACTACGTACATTAG	59.102	37.037	0.00	0.00	0.00	1.73
2516	7339	2.093764	ACAGCAGCATGACTTCTACTCC	60.094	50.000	0.00	0.00	39.69	3.85
2518	7341	1.484240	GCAGCATGACTTCTACTCCCT	59.516	52.381	0.00	0.00	39.69	4.20
2521	7344	1.067821	GCATGACTTCTACTCCCTCCG	59.932	57.143	0.00	0.00	0.00	4.63
2522	7345	2.379972	CATGACTTCTACTCCCTCCGT	58.620	52.381	0.00	0.00	0.00	4.69
2523	7346	2.599408	TGACTTCTACTCCCTCCGTT	57.401	50.000	0.00	0.00	0.00	4.44
2524	7347	2.444421	TGACTTCTACTCCCTCCGTTC	58.556	52.381	0.00	0.00	0.00	3.95
2529	7352	3.744940	TCTACTCCCTCCGTTCCTAAA	57.255	47.619	0.00	0.00	0.00	1.85
2530	7353	4.261411	TCTACTCCCTCCGTTCCTAAAT	57.739	45.455	0.00	0.00	0.00	1.40
2531	7354	5.393068	TCTACTCCCTCCGTTCCTAAATA	57.607	43.478	0.00	0.00	0.00	1.40
2532	7355	5.136105	TCTACTCCCTCCGTTCCTAAATAC	58.864	45.833	0.00	0.00	0.00	1.89
2533	7356	3.991683	ACTCCCTCCGTTCCTAAATACT	58.008	45.455	0.00	0.00	0.00	2.12
2534	7357	3.959449	ACTCCCTCCGTTCCTAAATACTC	59.041	47.826	0.00	0.00	0.00	2.59
2542	7365	3.243334	CGTTCCTAAATACTCCCTCCGTC	60.243	52.174	0.00	0.00	0.00	4.79
2611	7435	3.033659	ACATTATGGGACGGAGAGAGT	57.966	47.619	0.00	0.00	0.00	3.24
2612	7436	4.180377	ACATTATGGGACGGAGAGAGTA	57.820	45.455	0.00	0.00	0.00	2.59
2627	7451	9.054922	ACGGAGAGAGTATATAAGTCTTTGTAC	57.945	37.037	0.00	0.00	38.04	2.90
2642	7466	8.488651	AGTCTTTGTACAGATTTTATTACGGG	57.511	34.615	0.00	0.00	0.00	5.28
2648	7472	4.532834	ACAGATTTTATTACGGGCCACAT	58.467	39.130	4.39	0.00	0.00	3.21
2652	7476	3.815856	TTTATTACGGGCCACATACGA	57.184	42.857	4.39	0.00	0.00	3.43
2706	7530	7.709269	TTCACTCATTTTGCTCCGTATATAC	57.291	36.000	2.53	2.53	0.00	1.47
2720	7544	7.916450	GCTCCGTATATACTTCATAGTGGAATC	59.084	40.741	11.05	0.28	35.78	2.52
2790	7615	7.495934	AGAATTATGTTCTCATCCGTCGATTTT	59.504	33.333	0.00	0.00	35.70	1.82
2791	7616	6.583912	TTATGTTCTCATCCGTCGATTTTC	57.416	37.500	0.00	0.00	35.70	2.29
2792	7617	4.188247	TGTTCTCATCCGTCGATTTTCT	57.812	40.909	0.00	0.00	0.00	2.52
2793	7618	5.319140	TGTTCTCATCCGTCGATTTTCTA	57.681	39.130	0.00	0.00	0.00	2.10
2794	7619	5.716094	TGTTCTCATCCGTCGATTTTCTAA	58.284	37.500	0.00	0.00	0.00	2.10
2795	7620	6.160684	TGTTCTCATCCGTCGATTTTCTAAA	58.839	36.000	0.00	0.00	0.00	1.85
2796	7621	6.090358	TGTTCTCATCCGTCGATTTTCTAAAC	59.910	38.462	0.00	0.00	0.00	2.01
2797	7622	5.716094	TCTCATCCGTCGATTTTCTAAACA	58.284	37.500	0.00	0.00	0.00	2.83
2798	7623	6.338146	TCTCATCCGTCGATTTTCTAAACAT	58.662	36.000	0.00	0.00	0.00	2.71
2916	7746	0.871722	CGGTCTTGCATTCGGAAACA	59.128	50.000	0.00	0.00	0.00	2.83
3079	7912	5.127031	GCTGCTTTAGGAATTCCACCAATAA	59.873	40.000	26.22	12.45	38.89	1.40
3177	8031	2.566833	TGGCGATCCATAAATCTGGG	57.433	50.000	0.00	0.00	37.47	4.45
3303	8164	8.532819	AGTTTAATGTTTAAACCTGAACACCAA	58.467	29.630	15.59	0.00	38.46	3.67

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
18	19	1.590238	GAGATGATGAACAACGCCTCG	59.410	52.381	0.00	0.00	0.00	4.63
49	50	6.045577	ACAAAGGAATCTTAAGAGAAAGGGGA	59.954	38.462	11.53	0.00	35.07	4.81
111	113	7.839705	TGTTAGGATCACACTACTATTCCTCTT	59.160	37.037	0.00	0.00	35.33	2.85
195	197	2.356665	TACAACCAGCACCAACACAT	57.643	45.000	0.00	0.00	0.00	3.21
201	203	1.004628	AGATGCATACAACCAGCACCA	59.995	47.619	0.00	0.00	41.60	4.17
234	238	4.138290	ACACAATGAATAAACACCCGACA	58.862	39.130	0.00	0.00	0.00	4.35
236	240	5.776173	AAACACAATGAATAAACACCCGA	57.224	34.783	0.00	0.00	0.00	5.14
287	291	6.976934	AACTCAAAGCATTCCCTAGAAAAA	57.023	33.333	0.00	0.00	35.09	1.94
288	292	7.231467	ACTAACTCAAAGCATTCCCTAGAAAA	58.769	34.615	0.00	0.00	35.09	2.29
289	293	6.779860	ACTAACTCAAAGCATTCCCTAGAAA	58.220	36.000	0.00	0.00	35.09	2.52
290	294	6.374417	ACTAACTCAAAGCATTCCCTAGAA	57.626	37.500	0.00	0.00	36.15	2.10
291	295	7.490657	TTACTAACTCAAAGCATTCCCTAGA	57.509	36.000	0.00	0.00	0.00	2.43
292	296	8.561738	TTTTACTAACTCAAAGCATTCCCTAG	57.438	34.615	0.00	0.00	0.00	3.02
293	297	8.927675	TTTTTACTAACTCAAAGCATTCCCTA	57.072	30.769	0.00	0.00	0.00	3.53
294	298	7.039714	CCTTTTTACTAACTCAAAGCATTCCCT	60.040	37.037	0.00	0.00	0.00	4.20
295	299	7.090808	CCTTTTTACTAACTCAAAGCATTCCC	58.909	38.462	0.00	0.00	0.00	3.97
296	300	6.586463	GCCTTTTTACTAACTCAAAGCATTCC	59.414	38.462	0.00	0.00	0.00	3.01
297	301	6.305638	CGCCTTTTTACTAACTCAAAGCATTC	59.694	38.462	0.00	0.00	0.00	2.67
298	302	6.149633	CGCCTTTTTACTAACTCAAAGCATT	58.850	36.000	0.00	0.00	0.00	3.56
299	303	5.699839	CGCCTTTTTACTAACTCAAAGCAT	58.300	37.500	0.00	0.00	0.00	3.79
300	304	4.555906	GCGCCTTTTTACTAACTCAAAGCA	60.556	41.667	0.00	0.00	0.00	3.91
301	305	3.912563	GCGCCTTTTTACTAACTCAAAGC	59.087	43.478	0.00	0.00	0.00	3.51
305	309	2.039348	AGGGCGCCTTTTTACTAACTCA	59.961	45.455	28.56	0.00	0.00	3.41
368	533	1.401905	GGCTTTCATCCACGTTCCATC	59.598	52.381	0.00	0.00	0.00	3.51
469	635	5.071115	TGGTGCCTGCCTTTTAAAATAAAGT	59.929	36.000	0.09	0.00	34.11	2.66
487	653	1.222115	GAGACGTGACAACTGGTGCC	61.222	60.000	0.00	0.00	0.00	5.01
725	900	0.593128	GCACTAGTGGCACCAACAAG	59.407	55.000	23.95	6.98	0.00	3.16
822	1002	0.682292	TGGGCACGTAGACACAATGA	59.318	50.000	0.00	0.00	0.00	2.57
823	1003	1.196808	GTTGGGCACGTAGACACAATG	59.803	52.381	3.74	0.00	33.80	2.82
886	1072	2.289002	CCTTTTATGCTCGCTGATGGAC	59.711	50.000	0.00	0.00	0.00	4.02
887	1073	2.092968	ACCTTTTATGCTCGCTGATGGA	60.093	45.455	0.00	0.00	0.00	3.41
1005	1198	2.683933	TTCTCGTGGGGAGGAGGC	60.684	66.667	0.00	0.00	43.34	4.70
1065	1258	3.702048	TGCCGAGGAAGGAACCGG	61.702	66.667	0.00	0.00	44.34	5.28
1090	1285	2.093658	AGGACCGAGCACGTTAATTCAT	60.094	45.455	2.18	0.00	37.88	2.57
1165	1360	1.004918	GTCCACCGTCTTCACAGGG	60.005	63.158	0.00	0.00	0.00	4.45
1304	1526	3.598715	TGTCGCCACCGTCTTCGT	61.599	61.111	0.00	0.00	35.54	3.85
1305	1527	3.103911	GTGTCGCCACCGTCTTCG	61.104	66.667	0.00	0.00	35.44	3.79
1327	1549	1.663702	CACCGTCGTCACTTCCACC	60.664	63.158	0.00	0.00	0.00	4.61
1332	1554	2.333938	CGTCCACCGTCGTCACTT	59.666	61.111	0.00	0.00	0.00	3.16
1503	1734	3.932710	GCGTCAGTGTCAAGGATGAATAA	59.067	43.478	0.00	0.00	37.30	1.40
1809	2041	3.169908	TGTACAGCTACATGGAAGGACA	58.830	45.455	0.00	0.00	0.00	4.02
1841	2444	0.745468	ATAGACGAGCTTTCCGGGAC	59.255	55.000	0.00	0.00	0.00	4.46
1907	2510	9.671279	TTTGTCTCAAATTTATCTAGATGCAGA	57.329	29.630	15.79	4.19	0.00	4.26
2019	2622	1.308128	ACCCCTGCTCCATCCATGA	60.308	57.895	0.00	0.00	0.00	3.07
2020	2623	1.152819	CACCCCTGCTCCATCCATG	60.153	63.158	0.00	0.00	0.00	3.66
2021	2624	1.620589	ACACCCCTGCTCCATCCAT	60.621	57.895	0.00	0.00	0.00	3.41
2022	2625	2.204136	ACACCCCTGCTCCATCCA	60.204	61.111	0.00	0.00	0.00	3.41
2118	3881	6.591935	ACGGCTAGGAAAGATAAATTGATCA	58.408	36.000	5.56	0.00	0.00	2.92
2147	3910	8.637986	TGCATAATATGACCCCTTATGTTTTTC	58.362	33.333	4.14	0.00	35.97	2.29
2175	4776	2.612972	CCCTGCGTACCATATCCATCAC	60.613	54.545	0.00	0.00	0.00	3.06
2181	4782	3.678056	TGAATCCCTGCGTACCATATC	57.322	47.619	0.00	0.00	0.00	1.63
2190	4791	2.291365	TCACATTCATGAATCCCTGCG	58.709	47.619	18.16	8.61	0.00	5.18
2366	4977	0.395586	AACAAAGCACTGGTGGCTGA	60.396	50.000	2.84	0.00	41.66	4.26
2516	7339	3.306613	AGGGAGTATTTAGGAACGGAGG	58.693	50.000	0.00	0.00	0.00	4.30
2518	7341	3.303049	GGAGGGAGTATTTAGGAACGGA	58.697	50.000	0.00	0.00	0.00	4.69
2521	7344	3.069300	GGACGGAGGGAGTATTTAGGAAC	59.931	52.174	0.00	0.00	0.00	3.62
2522	7345	3.303049	GGACGGAGGGAGTATTTAGGAA	58.697	50.000	0.00	0.00	0.00	3.36
2523	7346	2.425392	GGGACGGAGGGAGTATTTAGGA	60.425	54.545	0.00	0.00	0.00	2.94
2524	7347	1.969208	GGGACGGAGGGAGTATTTAGG	59.031	57.143	0.00	0.00	0.00	2.69
2529	7352	3.562108	ATTATGGGACGGAGGGAGTAT	57.438	47.619	0.00	0.00	0.00	2.12
2530	7353	4.687262	ATATTATGGGACGGAGGGAGTA	57.313	45.455	0.00	0.00	0.00	2.59
2531	7354	3.562108	ATATTATGGGACGGAGGGAGT	57.438	47.619	0.00	0.00	0.00	3.85
2532	7355	5.269991	TCTTATATTATGGGACGGAGGGAG	58.730	45.833	0.00	0.00	0.00	4.30
2533	7356	5.279562	TCTTATATTATGGGACGGAGGGA	57.720	43.478	0.00	0.00	0.00	4.20
2534	7357	5.425539	ACATCTTATATTATGGGACGGAGGG	59.574	44.000	0.00	0.00	0.00	4.30
2585	7409	5.839063	TCTCTCCGTCCCATAATGTAAGATT	59.161	40.000	0.00	0.00	0.00	2.40
2586	7410	5.394738	TCTCTCCGTCCCATAATGTAAGAT	58.605	41.667	0.00	0.00	0.00	2.40
2601	7425	9.054922	GTACAAAGACTTATATACTCTCTCCGT	57.945	37.037	0.00	0.00	0.00	4.69
2627	7451	5.333798	CGTATGTGGCCCGTAATAAAATCTG	60.334	44.000	0.00	0.00	0.00	2.90
2629	7453	4.751098	TCGTATGTGGCCCGTAATAAAATC	59.249	41.667	0.00	0.00	0.00	2.17
2631	7455	4.134379	TCGTATGTGGCCCGTAATAAAA	57.866	40.909	0.00	0.00	0.00	1.52
2632	7456	3.815856	TCGTATGTGGCCCGTAATAAA	57.184	42.857	0.00	0.00	0.00	1.40
2637	7461	0.825410	ACATTCGTATGTGGCCCGTA	59.175	50.000	6.89	0.00	43.29	4.02
2639	7463	2.163818	ATACATTCGTATGTGGCCCG	57.836	50.000	16.91	0.00	44.56	6.13
2642	7466	6.756542	TGCATCTATATACATTCGTATGTGGC	59.243	38.462	16.91	8.30	44.56	5.01
2671	7495	9.973450	GAGCAAAATGAGTGAATCTATACTCTA	57.027	33.333	0.00	0.00	42.86	2.43
2677	7501	5.431765	ACGGAGCAAAATGAGTGAATCTAT	58.568	37.500	0.00	0.00	0.00	1.98
2684	7508	7.438160	TGAAGTATATACGGAGCAAAATGAGTG	59.562	37.037	7.23	0.00	0.00	3.51
2741	7565	3.119245	TGTGCATAGTACTCCTCCGTTTC	60.119	47.826	0.00	0.00	0.00	2.78
2742	7566	2.829720	TGTGCATAGTACTCCTCCGTTT	59.170	45.455	0.00	0.00	0.00	3.60
2758	7583	5.065090	CGGATGAGAACATAATTCTTGTGCA	59.935	40.000	3.05	0.00	36.82	4.57
2790	7615	5.497464	TGTGAGATTGGACCATGTTTAGA	57.503	39.130	0.00	0.00	0.00	2.10
2791	7616	5.449588	GCATGTGAGATTGGACCATGTTTAG	60.450	44.000	0.00	0.00	36.23	1.85
2792	7617	4.398988	GCATGTGAGATTGGACCATGTTTA	59.601	41.667	0.00	0.00	36.23	2.01
2793	7618	3.194116	GCATGTGAGATTGGACCATGTTT	59.806	43.478	0.00	0.00	36.23	2.83
2794	7619	2.756760	GCATGTGAGATTGGACCATGTT	59.243	45.455	0.00	0.00	36.23	2.71
2795	7620	2.291089	TGCATGTGAGATTGGACCATGT	60.291	45.455	0.00	0.00	36.23	3.21
2796	7621	2.371306	TGCATGTGAGATTGGACCATG	58.629	47.619	0.00	0.00	36.77	3.66
2797	7622	2.812836	TGCATGTGAGATTGGACCAT	57.187	45.000	0.00	0.00	0.00	3.55
2798	7623	2.812836	ATGCATGTGAGATTGGACCA	57.187	45.000	0.00	0.00	0.00	4.02
2857	7687	6.830912	AGCTATTATTTCTACATGACCTGCA	58.169	36.000	0.00	0.00	0.00	4.41
2916	7746	6.148976	CGGAATATCAGCATCAGATCAAATGT	59.851	38.462	0.00	0.00	0.00	2.71
2966	7796	3.096541	CGTGAACGACGTGGTACAT	57.903	52.632	2.83	0.00	43.50	2.29
2988	7818	1.688197	CAACATGTTGCACTCCCCTTT	59.312	47.619	24.69	0.00	33.45	3.11
3270	8131	9.275398	TCAGGTTTAAACATTAAACTCATACGT	57.725	29.630	19.57	0.00	37.51	3.57

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.