Multiple sequence alignment - TraesCS7D01G153000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G153000 chr7D 100.000 8989 0 0 1 8989 101466993 101475981 0.000000e+00 16600.0
1 TraesCS7D01G153000 chr7D 87.160 919 100 11 1 917 101436779 101437681 0.000000e+00 1027.0
2 TraesCS7D01G153000 chr7D 91.455 749 44 4 934 1679 101437741 101438472 0.000000e+00 1011.0
3 TraesCS7D01G153000 chr7D 84.052 928 117 19 1 920 101438688 101439592 0.000000e+00 865.0
4 TraesCS7D01G153000 chr7D 86.455 598 61 9 934 1528 101439649 101440229 9.840000e-179 638.0
5 TraesCS7D01G153000 chr7D 92.711 343 24 1 6246 6587 101524584 101524926 2.250000e-135 494.0
6 TraesCS7D01G153000 chr7D 85.321 109 11 5 6674 6781 101548815 101548919 3.430000e-19 108.0
7 TraesCS7D01G153000 chr7A 96.726 6780 191 14 1 6768 105161437 105168197 0.000000e+00 11261.0
8 TraesCS7D01G153000 chr7A 88.489 1529 148 10 1 1528 105159375 105160876 0.000000e+00 1823.0
9 TraesCS7D01G153000 chr7A 85.761 927 109 20 1 918 105147093 105148005 0.000000e+00 959.0
10 TraesCS7D01G153000 chr7A 90.000 750 52 8 7069 7813 105169005 105169736 0.000000e+00 948.0
11 TraesCS7D01G153000 chr7A 84.294 815 103 12 1 809 105157555 105158350 0.000000e+00 773.0
12 TraesCS7D01G153000 chr7A 89.512 553 36 5 1043 1595 105148141 105148671 0.000000e+00 680.0
13 TraesCS7D01G153000 chr7A 87.137 482 43 5 1048 1528 105158352 105158815 6.180000e-146 529.0
14 TraesCS7D01G153000 chr7A 88.509 322 16 9 7818 8130 105169905 105170214 3.960000e-98 370.0
15 TraesCS7D01G153000 chr7A 92.887 239 13 2 6243 6480 105222755 105222990 2.400000e-90 344.0
16 TraesCS7D01G153000 chr7A 86.120 317 31 8 8676 8989 105170595 105170901 6.730000e-86 329.0
17 TraesCS7D01G153000 chr7A 88.446 251 22 4 6820 7067 105168561 105168807 6.820000e-76 296.0
18 TraesCS7D01G153000 chr7A 94.444 90 5 0 1590 1679 105157250 105157339 1.220000e-28 139.0
19 TraesCS7D01G153000 chr7A 90.291 103 9 1 6472 6574 105223012 105223113 5.660000e-27 134.0
20 TraesCS7D01G153000 chr7A 93.506 77 5 0 8123 8199 105170406 105170482 2.050000e-21 115.0
21 TraesCS7D01G153000 chr7B 96.636 6777 210 11 1 6768 58536773 58543540 0.000000e+00 11236.0
22 TraesCS7D01G153000 chr7B 89.402 1689 93 30 6767 8397 58543699 58545359 0.000000e+00 2049.0
23 TraesCS7D01G153000 chr7B 96.996 233 5 2 8663 8894 58545957 58546188 3.040000e-104 390.0
24 TraesCS7D01G153000 chr7B 92.829 251 13 3 6243 6492 58648196 58648442 8.580000e-95 359.0
25 TraesCS7D01G153000 chr7B 90.789 228 21 0 8436 8663 58545677 58545904 1.130000e-78 305.0
26 TraesCS7D01G153000 chr7B 83.260 227 28 4 4925 5142 2477570 2477795 5.500000e-47 200.0
27 TraesCS7D01G153000 chr7B 98.571 70 1 0 8919 8988 58546188 58546257 3.410000e-24 124.0
28 TraesCS7D01G153000 chr7B 90.698 86 8 0 6479 6564 58648459 58648544 2.050000e-21 115.0
29 TraesCS7D01G153000 chr7B 93.548 62 3 1 8408 8468 11922467 11922406 3.460000e-14 91.6
30 TraesCS7D01G153000 chr2B 83.682 239 36 2 4909 5145 658483621 658483384 1.170000e-53 222.0
31 TraesCS7D01G153000 chr2B 83.898 236 35 2 4909 5142 672322137 672322371 1.170000e-53 222.0
32 TraesCS7D01G153000 chr2B 88.750 80 6 3 8409 8488 799612006 799612082 2.670000e-15 95.3
33 TraesCS7D01G153000 chr2A 84.163 221 31 3 4925 5142 87874880 87875099 2.540000e-50 211.0
34 TraesCS7D01G153000 chr2A 95.000 60 2 1 8409 8468 574978454 574978396 9.610000e-15 93.5
35 TraesCS7D01G153000 chr5B 83.482 224 34 2 4921 5142 562303715 562303937 1.180000e-48 206.0
36 TraesCS7D01G153000 chr2D 96.721 61 1 1 8408 8468 33878885 33878826 5.740000e-17 100.0
37 TraesCS7D01G153000 chr2D 96.667 60 0 2 8408 8467 629605502 629605559 2.070000e-16 99.0
38 TraesCS7D01G153000 chr5D 93.846 65 1 3 8409 8472 549645497 549645435 2.670000e-15 95.3
39 TraesCS7D01G153000 chr5D 91.176 68 5 1 8408 8474 520064542 520064475 3.460000e-14 91.6
40 TraesCS7D01G153000 chr4B 84.146 82 7 4 8391 8467 105349081 105349161 3.480000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G153000 chr7D 101466993 101475981 8988 False 16600.00 16600 100.0000 1 8989 1 chr7D.!!$F1 8988
1 TraesCS7D01G153000 chr7D 101436779 101440229 3450 False 885.25 1027 87.2805 1 1679 4 chr7D.!!$F4 1678
2 TraesCS7D01G153000 chr7A 105157250 105170901 13651 False 1658.30 11261 89.7671 1 8989 10 chr7A.!!$F2 8988
3 TraesCS7D01G153000 chr7A 105147093 105148671 1578 False 819.50 959 87.6365 1 1595 2 chr7A.!!$F1 1594
4 TraesCS7D01G153000 chr7B 58536773 58546257 9484 False 2820.80 11236 94.4788 1 8988 5 chr7B.!!$F2 8987

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
667 980 0.319211 CGTGCAAGAACCGAGTACCA 60.319 55.000 0.00 0.00 0.00 3.25 F
1691 5936 0.106335 AGATGGAGCGGAGATTGCTG 59.894 55.000 0.00 0.00 44.18 4.41 F
2120 6365 4.151121 TGCCTGAATTTGAAGTGGAATCA 58.849 39.130 0.00 0.00 0.00 2.57 F
3163 7408 2.806856 GCGGCATCTTCAGCTCACG 61.807 63.158 0.00 0.00 0.00 4.35 F
3915 8160 7.096551 GCAAGCAAGTATTTCCCAAATTCTTA 58.903 34.615 1.85 0.00 36.67 2.10 F
4495 8749 0.179179 GCATCTTCTCCAAGCAACGC 60.179 55.000 0.00 0.00 0.00 4.84 F
4619 8873 0.247814 GCGTTTGCATCATCCGTCTG 60.248 55.000 0.00 0.00 42.15 3.51 F
6030 10284 0.671781 CGGGACTGTCAGCTTCCTTG 60.672 60.000 10.38 0.53 0.00 3.61 F
6962 11536 0.250338 ACGAAACCTTCCTCAGTGCC 60.250 55.000 0.00 0.00 0.00 5.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2120 6365 2.039084 CCAAGCAAGAAGTAGTGGTCCT 59.961 50.000 0.00 0.00 0.00 3.85 R
3163 7408 6.183360 CCAATCACTTGAGGGGTCATTTAATC 60.183 42.308 0.00 0.00 34.04 1.75 R
3748 7993 5.877012 GCAGAATTCTGAAAGGACATAGACA 59.123 40.000 34.43 0.00 46.59 3.41 R
4297 8542 1.134907 CAGGGCAATGATCAAAGGTGC 60.135 52.381 0.00 7.46 34.42 5.01 R
4823 9077 1.409427 CCAGGAGTAATCTGACGACCC 59.591 57.143 0.00 0.00 34.36 4.46 R
6030 10284 0.674895 ATCAGCGGAACTTGTCCTGC 60.675 55.000 0.00 0.00 45.36 4.85 R
6830 11396 7.502226 GGTTATCACCAGATTTCATGATACCAA 59.498 37.037 0.00 0.00 43.61 3.67 R
7254 12026 0.537188 CCAGAGCAATACCCTGTCGT 59.463 55.000 0.00 0.00 0.00 4.34 R
8369 13587 0.173935 CTGGGCGACGTGGTATACAA 59.826 55.000 5.01 0.00 0.00 2.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
56 362 8.506168 TTGTCTCAACAAAGTAATCTTGTTCT 57.494 30.769 0.00 0.00 42.34 3.01
58 364 9.607988 TGTCTCAACAAAGTAATCTTGTTCTTA 57.392 29.630 0.00 0.00 33.79 2.10
230 539 9.974980 TGAAATATGACGCATATGTTAGACTAA 57.025 29.630 4.29 0.00 37.17 2.24
300 611 7.435192 CCTTATATATGTTTATCGCTCGCATGA 59.565 37.037 0.00 0.00 0.00 3.07
490 803 1.645034 AAGTCGTCGAATGCCATGAG 58.355 50.000 0.00 0.00 0.00 2.90
507 820 3.885724 TGAGACACTCAGTGAACAACA 57.114 42.857 13.14 7.09 35.39 3.33
536 849 5.297029 TGATATCGTCTAGGAATAGGATGCG 59.703 44.000 0.00 0.00 0.00 4.73
548 861 5.471456 GGAATAGGATGCGTCAAGAAATCAT 59.529 40.000 8.47 0.00 0.00 2.45
569 882 6.591935 TCATATTCTAGCTGTTAAACAGGGG 58.408 40.000 0.00 0.00 46.01 4.79
620 933 6.017192 ACATATACGGGATGTCTACCTTCAT 58.983 40.000 0.00 0.00 31.84 2.57
639 952 2.605837 TGCCTAGTCAAACAACGACA 57.394 45.000 0.00 0.00 35.77 4.35
667 980 0.319211 CGTGCAAGAACCGAGTACCA 60.319 55.000 0.00 0.00 0.00 3.25
685 998 1.472082 CCAATTTCAGCATGTACGGCA 59.528 47.619 11.34 0.00 37.40 5.69
689 1002 1.725641 TTCAGCATGTACGGCAGAAG 58.274 50.000 11.42 0.90 37.40 2.85
697 1010 1.610038 TGTACGGCAGAAGTCTCGAAA 59.390 47.619 0.00 0.00 0.00 3.46
710 4901 1.490069 TCTCGAAATCATGGGGATGCA 59.510 47.619 0.00 0.00 36.02 3.96
764 4955 2.763902 GGCACTTGGGGGTAGCTT 59.236 61.111 0.00 0.00 0.00 3.74
1191 5433 3.021263 CCATTTCCCCCGTCCCCT 61.021 66.667 0.00 0.00 0.00 4.79
1288 5533 1.605453 GGATTAAGGGCCACCACGA 59.395 57.895 6.18 0.00 40.13 4.35
1643 5888 3.130633 TGATTCATCCGACGCCATAAAG 58.869 45.455 0.00 0.00 0.00 1.85
1681 5926 1.875813 GCAGTGACGAGATGGAGCG 60.876 63.158 0.00 0.00 0.00 5.03
1691 5936 0.106335 AGATGGAGCGGAGATTGCTG 59.894 55.000 0.00 0.00 44.18 4.41
1979 6224 5.243730 AGCTCAGCTACTCCTTATTCTCATC 59.756 44.000 0.00 0.00 36.99 2.92
2018 6263 4.510167 AAATCTCCTCCGAATGGTTCAT 57.490 40.909 0.00 0.00 36.30 2.57
2066 6311 4.365514 TTCCCAGTATTCTGTTGCTGAA 57.634 40.909 0.00 0.00 39.82 3.02
2120 6365 4.151121 TGCCTGAATTTGAAGTGGAATCA 58.849 39.130 0.00 0.00 0.00 2.57
2831 7076 6.205784 CGTTTTCATTTTGCTCCTCACTTTA 58.794 36.000 0.00 0.00 0.00 1.85
3087 7332 5.010922 AGCATAATGTCAAAAACCTTCAGCA 59.989 36.000 0.00 0.00 0.00 4.41
3163 7408 2.806856 GCGGCATCTTCAGCTCACG 61.807 63.158 0.00 0.00 0.00 4.35
3748 7993 9.113838 CTTACCTTTCATCACAGCTACAATATT 57.886 33.333 0.00 0.00 0.00 1.28
3915 8160 7.096551 GCAAGCAAGTATTTCCCAAATTCTTA 58.903 34.615 1.85 0.00 36.67 2.10
4324 8569 2.161855 TGATCATTGCCCTGTTGACAC 58.838 47.619 0.00 0.00 0.00 3.67
4495 8749 0.179179 GCATCTTCTCCAAGCAACGC 60.179 55.000 0.00 0.00 0.00 4.84
4619 8873 0.247814 GCGTTTGCATCATCCGTCTG 60.248 55.000 0.00 0.00 42.15 3.51
4661 8915 3.076621 TGATACTGCCAGCTTGTCTTTG 58.923 45.455 0.00 0.00 0.00 2.77
4823 9077 8.275015 ACTATCATATACATGGAGAACTCGAG 57.725 38.462 11.84 11.84 32.61 4.04
5318 9572 3.399330 GCAAGTGGACTTACTGCTTACA 58.601 45.455 0.00 0.00 34.28 2.41
5810 10064 1.228429 CTTGGGGCGGACAAAGGAA 60.228 57.895 0.00 0.00 0.00 3.36
5837 10091 5.166398 GCTAAAATGCTTCAGTCTGCAAAT 58.834 37.500 0.00 0.00 42.74 2.32
6030 10284 0.671781 CGGGACTGTCAGCTTCCTTG 60.672 60.000 10.38 0.53 0.00 3.61
6068 10322 5.635417 TGATGTCCTCTTATCTATCTGCG 57.365 43.478 0.00 0.00 0.00 5.18
6170 10424 9.922477 TTAACTGAGAATATCCTCTCACTTCTA 57.078 33.333 3.42 0.00 45.45 2.10
6763 11017 2.730404 TGCATGCATGTTTTTGTTAGCG 59.270 40.909 26.79 0.00 0.00 4.26
6798 11212 5.671463 AGATACATCTAGACCCTGAAGGA 57.329 43.478 0.00 0.00 35.43 3.36
6857 11423 7.147320 TGGTATCATGAAATCTGGTGATAACCT 60.147 37.037 0.00 0.00 39.41 3.50
6879 11445 7.672240 ACCTTATTCCACTATTCTAGCTTAGC 58.328 38.462 0.00 0.00 0.00 3.09
6909 11477 7.426929 AAGTCTTTCTAAGTTGCTATGTGTG 57.573 36.000 0.00 0.00 0.00 3.82
6910 11478 5.934625 AGTCTTTCTAAGTTGCTATGTGTGG 59.065 40.000 0.00 0.00 0.00 4.17
6920 11488 1.679944 GCTATGTGTGGTGCCTCATGT 60.680 52.381 0.00 0.00 0.00 3.21
6926 11500 1.696884 TGTGGTGCCTCATGTCAGTAA 59.303 47.619 0.00 0.00 0.00 2.24
6929 11503 3.758554 GTGGTGCCTCATGTCAGTAAATT 59.241 43.478 0.00 0.00 0.00 1.82
6945 11519 7.946237 GTCAGTAAATTTCATTGCAAATTCACG 59.054 33.333 1.71 0.00 35.35 4.35
6962 11536 0.250338 ACGAAACCTTCCTCAGTGCC 60.250 55.000 0.00 0.00 0.00 5.01
7004 11579 7.118723 TGTAGAAGTTGCAGGGAATGATTAAT 58.881 34.615 0.00 0.00 0.00 1.40
7055 11630 7.154435 AGCTAATGCATTTCATATAGCTTGG 57.846 36.000 21.11 0.00 42.54 3.61
7067 11642 5.991606 TCATATAGCTTGGTGCAGTATTGAC 59.008 40.000 0.00 0.00 45.94 3.18
7116 11887 7.878495 AGGTGTAGACATTATAATTTTGGGGA 58.122 34.615 0.00 0.00 0.00 4.81
7125 11896 8.927411 ACATTATAATTTTGGGGAATGGAAGAG 58.073 33.333 0.00 0.00 0.00 2.85
7180 11951 2.289002 GTCTTAGCTTCCAATGGCATCG 59.711 50.000 0.00 0.00 0.00 3.84
7186 11957 3.567164 AGCTTCCAATGGCATCGAATAAG 59.433 43.478 0.00 2.35 0.00 1.73
7190 11961 2.951642 CCAATGGCATCGAATAAGGTGT 59.048 45.455 0.00 0.00 0.00 4.16
7210 11981 7.292319 AGGTGTTATTAAAACCACTAACCAGT 58.708 34.615 16.49 0.00 36.37 4.00
7212 11983 8.077991 GGTGTTATTAAAACCACTAACCAGTTC 58.922 37.037 10.43 0.00 33.94 3.01
7262 12034 3.982576 AGCAAACTTTAAACGACAGGG 57.017 42.857 0.00 0.00 0.00 4.45
7263 12035 3.284617 AGCAAACTTTAAACGACAGGGT 58.715 40.909 0.00 0.00 0.00 4.34
7264 12036 4.453751 AGCAAACTTTAAACGACAGGGTA 58.546 39.130 0.00 0.00 0.00 3.69
7265 12037 5.067954 AGCAAACTTTAAACGACAGGGTAT 58.932 37.500 0.00 0.00 0.00 2.73
7280 12052 2.975489 AGGGTATTGCTCTGGAGTATGG 59.025 50.000 0.00 0.00 0.00 2.74
7286 12058 3.350219 TGCTCTGGAGTATGGGAAAAC 57.650 47.619 0.00 0.00 0.00 2.43
7290 12062 4.443598 GCTCTGGAGTATGGGAAAACTAGG 60.444 50.000 0.00 0.00 0.00 3.02
7299 12071 7.054751 AGTATGGGAAAACTAGGAAGTAATGC 58.945 38.462 0.00 0.00 33.75 3.56
7353 12125 2.238521 GAACTCAATCCCAAAGGTGCA 58.761 47.619 0.00 0.00 0.00 4.57
7433 12205 7.923344 TCACTGCTTAAAATCTAGCTCAGATAC 59.077 37.037 0.00 0.00 43.56 2.24
7439 12211 5.446143 AAATCTAGCTCAGATACGAGTGG 57.554 43.478 0.00 0.00 43.56 4.00
7441 12213 4.684484 TCTAGCTCAGATACGAGTGGTA 57.316 45.455 0.00 0.00 35.33 3.25
7442 12214 5.230323 TCTAGCTCAGATACGAGTGGTAT 57.770 43.478 0.00 0.00 44.52 2.73
7453 12225 9.114965 CAGATACGAGTGGTATAAAATTCTACG 57.885 37.037 0.00 0.00 41.91 3.51
7463 12235 7.172532 TGGTATAAAATTCTACGTGCCATGATC 59.827 37.037 0.00 0.00 0.00 2.92
7464 12236 7.172532 GGTATAAAATTCTACGTGCCATGATCA 59.827 37.037 0.00 0.00 0.00 2.92
7465 12237 5.895636 AAAATTCTACGTGCCATGATCAA 57.104 34.783 0.00 0.00 0.00 2.57
7466 12238 5.895636 AAATTCTACGTGCCATGATCAAA 57.104 34.783 0.00 0.00 0.00 2.69
7467 12239 6.455360 AAATTCTACGTGCCATGATCAAAT 57.545 33.333 0.00 0.00 0.00 2.32
7468 12240 7.566760 AAATTCTACGTGCCATGATCAAATA 57.433 32.000 0.00 0.00 0.00 1.40
7469 12241 7.750229 AATTCTACGTGCCATGATCAAATAT 57.250 32.000 0.00 0.00 0.00 1.28
7470 12242 8.846943 AATTCTACGTGCCATGATCAAATATA 57.153 30.769 0.00 0.00 0.00 0.86
7471 12243 7.652300 TTCTACGTGCCATGATCAAATATAC 57.348 36.000 0.00 0.00 0.00 1.47
7502 12274 5.523013 TGTGAAAACCTTTTCTTTTTGCG 57.477 34.783 10.97 0.00 45.14 4.85
7531 12303 4.557496 GCACCTTTTCCTGATCACAGTTTC 60.557 45.833 0.00 0.00 42.05 2.78
7534 12306 3.485463 TTTCCTGATCACAGTTTCCGT 57.515 42.857 0.00 0.00 42.05 4.69
7570 12342 5.522824 GGATCAAGTGGTTTCTATCGTTACC 59.477 44.000 0.00 0.00 0.00 2.85
7717 12489 4.974721 CCAGTGCTGGGCCGGTTT 62.975 66.667 15.16 0.00 46.81 3.27
7791 12568 9.575868 TTGTACTATTTTAAGATGTGGTTTCCA 57.424 29.630 0.00 0.00 0.00 3.53
7813 12590 0.034089 AGCAACCATCCTTAGTGGCC 60.034 55.000 0.00 0.00 40.49 5.36
7814 12591 1.037579 GCAACCATCCTTAGTGGCCC 61.038 60.000 0.00 0.00 40.49 5.80
7819 12760 1.843851 CCATCCTTAGTGGCCCACTTA 59.156 52.381 23.78 12.61 42.59 2.24
7861 12805 4.026145 GCTTATGCAGTTCGTCTCATCTTC 60.026 45.833 0.00 0.00 39.41 2.87
7919 12863 4.664150 TTCCAGTTTGAAACCATTGGTC 57.336 40.909 9.22 0.00 33.12 4.02
8012 12956 7.652524 ATCAGTGTGTAGATTGTATCTCTGT 57.347 36.000 0.00 0.00 40.76 3.41
8085 13035 0.599558 TCGACCCGTTTACAGTGGAG 59.400 55.000 0.00 0.00 0.00 3.86
8086 13036 0.599558 CGACCCGTTTACAGTGGAGA 59.400 55.000 0.00 0.00 0.00 3.71
8087 13037 1.668047 CGACCCGTTTACAGTGGAGAC 60.668 57.143 0.00 0.00 0.00 3.36
8088 13038 0.316204 ACCCGTTTACAGTGGAGACG 59.684 55.000 11.39 11.39 0.00 4.18
8089 13039 3.117589 CCGTTTACAGTGGAGACGG 57.882 57.895 21.85 21.85 45.86 4.79
8090 13040 0.316204 CCGTTTACAGTGGAGACGGT 59.684 55.000 25.66 0.00 45.94 4.83
8091 13041 1.668047 CCGTTTACAGTGGAGACGGTC 60.668 57.143 25.66 0.00 45.94 4.79
8124 13279 7.775093 AGTTTAATCTGCTGCTATGGTTCATAA 59.225 33.333 0.00 0.00 0.00 1.90
8155 13310 4.201494 CGTTTAGTCAGCTAACATGTCACG 60.201 45.833 0.00 0.00 36.96 4.35
8158 13313 3.834610 AGTCAGCTAACATGTCACGTAC 58.165 45.455 0.00 0.00 0.00 3.67
8178 13333 6.924612 ACGTACCGTTCATGCATGTATATTTA 59.075 34.615 25.43 9.09 36.35 1.40
8229 13427 2.876581 GGTTTCCACCCTTCTGAACAT 58.123 47.619 0.00 0.00 37.03 2.71
8264 13462 4.787598 CGCACATAAATAGGGCAAGATTC 58.212 43.478 0.00 0.00 0.00 2.52
8267 13465 5.532406 GCACATAAATAGGGCAAGATTCTGA 59.468 40.000 0.00 0.00 0.00 3.27
8269 13467 7.391554 GCACATAAATAGGGCAAGATTCTGATA 59.608 37.037 0.00 0.00 0.00 2.15
8270 13468 9.458727 CACATAAATAGGGCAAGATTCTGATAT 57.541 33.333 0.00 0.00 0.00 1.63
8281 13498 7.231317 GGCAAGATTCTGATATTTGGGAACATA 59.769 37.037 0.00 0.00 42.32 2.29
8303 13520 4.200838 TCTTGTATCAAATCTGGCACGA 57.799 40.909 0.00 0.00 0.00 4.35
8312 13529 2.568623 ATCTGGCACGACTTTTCCTT 57.431 45.000 0.00 0.00 0.00 3.36
8313 13530 2.341846 TCTGGCACGACTTTTCCTTT 57.658 45.000 0.00 0.00 0.00 3.11
8324 13542 4.146443 CGACTTTTCCTTTGAAACGCATTC 59.854 41.667 0.00 0.00 40.12 2.67
8333 13551 4.944962 TTGAAACGCATTCGATCTGATT 57.055 36.364 0.00 0.00 41.18 2.57
8345 13563 7.118825 GCATTCGATCTGATTCTGATATTTGGA 59.881 37.037 6.08 0.00 0.00 3.53
8362 13580 1.077212 GAGGGCACATGGCATCTGT 60.077 57.895 12.29 0.00 45.99 3.41
8369 13587 3.474600 GCACATGGCATCTGTATCTTCT 58.525 45.455 0.00 0.00 43.97 2.85
8385 13603 2.159338 TCTTCTTGTATACCACGTCGCC 60.159 50.000 0.00 0.00 0.00 5.54
8420 13649 0.680280 TGAGTGCTACTCCCTCCGTC 60.680 60.000 11.99 0.00 44.44 4.79
8422 13651 2.439701 TGCTACTCCCTCCGTCCG 60.440 66.667 0.00 0.00 0.00 4.79
8423 13652 3.902086 GCTACTCCCTCCGTCCGC 61.902 72.222 0.00 0.00 0.00 5.54
8424 13653 2.439701 CTACTCCCTCCGTCCGCA 60.440 66.667 0.00 0.00 0.00 5.69
8425 13654 2.753043 TACTCCCTCCGTCCGCAC 60.753 66.667 0.00 0.00 0.00 5.34
8426 13655 3.278072 TACTCCCTCCGTCCGCACT 62.278 63.158 0.00 0.00 0.00 4.40
8427 13656 1.913951 TACTCCCTCCGTCCGCACTA 61.914 60.000 0.00 0.00 0.00 2.74
8428 13657 2.439701 TCCCTCCGTCCGCACTAG 60.440 66.667 0.00 0.00 0.00 2.57
8430 13659 2.490217 CCTCCGTCCGCACTAGTG 59.510 66.667 18.93 18.93 0.00 2.74
8431 13660 2.341101 CCTCCGTCCGCACTAGTGT 61.341 63.158 23.44 0.00 0.00 3.55
8432 13661 1.136984 CTCCGTCCGCACTAGTGTC 59.863 63.158 23.44 14.60 0.00 3.67
8433 13662 1.583495 CTCCGTCCGCACTAGTGTCA 61.583 60.000 23.44 5.66 0.00 3.58
8434 13663 1.174078 TCCGTCCGCACTAGTGTCAA 61.174 55.000 23.44 6.90 0.00 3.18
8453 13950 8.612619 AGTGTCAAAAACGCTCTTATATTATGG 58.387 33.333 0.00 0.00 45.69 2.74
8454 13951 7.855904 GTGTCAAAAACGCTCTTATATTATGGG 59.144 37.037 0.00 0.00 35.42 4.00
8457 13954 6.780706 AAAACGCTCTTATATTATGGGACG 57.219 37.500 0.00 0.00 0.00 4.79
8462 13959 4.141914 GCTCTTATATTATGGGACGGAGGG 60.142 50.000 0.00 0.00 0.00 4.30
8481 13978 5.453480 GGAGGGAGTACATGTTAATCTCCAC 60.453 48.000 25.54 20.71 44.33 4.02
8494 13991 0.681733 TCTCCACGCTTCTGAGCTTT 59.318 50.000 0.00 0.00 46.96 3.51
8497 13994 0.514691 CCACGCTTCTGAGCTTTGTC 59.485 55.000 0.00 0.00 46.96 3.18
8502 13999 2.404215 GCTTCTGAGCTTTGTCGTGTA 58.596 47.619 0.00 0.00 45.65 2.90
8503 14000 2.800544 GCTTCTGAGCTTTGTCGTGTAA 59.199 45.455 0.00 0.00 45.65 2.41
8519 14016 3.494398 CGTGTAACCTATATTGGGCAGCT 60.494 47.826 8.13 0.00 0.00 4.24
8537 14034 1.542915 GCTGCTGCTTGAAGAATTCCA 59.457 47.619 8.53 0.00 39.39 3.53
8538 14035 2.670509 GCTGCTGCTTGAAGAATTCCAC 60.671 50.000 8.53 0.00 39.39 4.02
8539 14036 2.555325 CTGCTGCTTGAAGAATTCCACA 59.445 45.455 0.65 0.00 46.93 4.17
8550 14047 9.918630 CTTGAAGAATTCCACAAATACATCTTT 57.081 29.630 13.33 0.00 46.93 2.52
8564 14061 2.649312 ACATCTTTGAATCCCCTGACCA 59.351 45.455 0.00 0.00 0.00 4.02
8578 14075 6.150332 TCCCCTGACCAAATCATTCTCTATA 58.850 40.000 0.00 0.00 36.48 1.31
8651 14317 3.027974 AGCGAGAGAAACCAGTGTTAC 57.972 47.619 0.00 0.00 33.30 2.50
8652 14318 2.067013 GCGAGAGAAACCAGTGTTACC 58.933 52.381 0.00 0.00 33.30 2.85
8765 14487 4.649674 TCAGACCTGTTGTTAGAAGACACT 59.350 41.667 0.00 0.00 0.00 3.55
8880 14603 7.008447 CACGAACTAAGATAACTGAGTAAGTGC 59.992 40.741 10.36 0.00 36.87 4.40
8933 14656 8.760980 AATCAGATAAGAGCAACTCTACTACT 57.239 34.615 0.00 0.00 40.28 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
144 450 7.230510 AGGTTAGCTATTCAAACATCAAACACA 59.769 33.333 0.00 0.00 0.00 3.72
249 560 6.138761 GCTAGAAAGACTTCACAACATGTTG 58.861 40.000 32.03 32.03 45.58 3.33
447 759 6.567687 TGTAATCGTGTTCAATTCCATGTT 57.432 33.333 0.00 0.00 0.00 2.71
477 790 1.550072 TGAGTGTCTCATGGCATTCGA 59.450 47.619 0.00 0.00 35.39 3.71
478 791 1.931841 CTGAGTGTCTCATGGCATTCG 59.068 52.381 0.00 0.00 39.92 3.34
479 792 2.676839 CACTGAGTGTCTCATGGCATTC 59.323 50.000 4.01 0.00 39.92 2.67
490 803 5.294306 TCATCTTTGTTGTTCACTGAGTGTC 59.706 40.000 12.93 7.89 34.79 3.67
507 820 9.707957 ATCCTATTCCTAGACGATATCATCTTT 57.292 33.333 6.62 0.00 0.00 2.52
548 861 4.786454 ACCCCCTGTTTAACAGCTAGAATA 59.214 41.667 18.72 0.00 44.63 1.75
569 882 6.258947 GGATTAGACATACTTCAAGAGCAACC 59.741 42.308 0.00 0.00 0.00 3.77
602 915 1.139058 GCATGAAGGTAGACATCCCGT 59.861 52.381 0.00 0.00 0.00 5.28
620 933 2.479837 CTGTCGTTGTTTGACTAGGCA 58.520 47.619 0.00 0.00 37.26 4.75
639 952 1.374631 TTCTTGCACGATGCTCGCT 60.375 52.632 10.54 0.00 45.12 4.93
658 971 3.009723 ACATGCTGAAATTGGTACTCGG 58.990 45.455 0.00 0.00 0.00 4.63
667 980 2.710377 TCTGCCGTACATGCTGAAATT 58.290 42.857 10.32 0.00 34.34 1.82
685 998 3.107601 TCCCCATGATTTCGAGACTTCT 58.892 45.455 0.00 0.00 0.00 2.85
689 1002 1.876156 GCATCCCCATGATTTCGAGAC 59.124 52.381 0.00 0.00 30.57 3.36
697 1010 1.488390 GTGGTTTGCATCCCCATGAT 58.512 50.000 0.00 0.00 30.57 2.45
710 4901 6.222038 AGTGTATGATAGACATCGTGGTTT 57.778 37.500 2.47 0.00 40.07 3.27
764 4955 7.174253 ACGAGCAGTACATGGAATTTAGAAAAA 59.826 33.333 0.00 0.00 0.00 1.94
1681 5926 5.824624 TCTTTAATGATGGACAGCAATCTCC 59.175 40.000 0.00 0.00 0.00 3.71
1691 5936 5.506317 CGCAAGGGAATCTTTAATGATGGAC 60.506 44.000 4.72 1.29 32.41 4.02
2018 6263 2.956333 TCCACTGAAAGAGACTTCGTCA 59.044 45.455 0.00 0.00 37.43 4.35
2120 6365 2.039084 CCAAGCAAGAAGTAGTGGTCCT 59.961 50.000 0.00 0.00 0.00 3.85
2831 7076 7.997773 ATTGCATGAATATAGATCTTGTGCT 57.002 32.000 0.00 0.00 0.00 4.40
3163 7408 6.183360 CCAATCACTTGAGGGGTCATTTAATC 60.183 42.308 0.00 0.00 34.04 1.75
3748 7993 5.877012 GCAGAATTCTGAAAGGACATAGACA 59.123 40.000 34.43 0.00 46.59 3.41
4297 8542 1.134907 CAGGGCAATGATCAAAGGTGC 60.135 52.381 0.00 7.46 34.42 5.01
4324 8569 6.347240 CCTCGAAGAAACTTTCTCATCAACAG 60.347 42.308 4.46 0.00 39.61 3.16
4495 8749 5.107375 GCACTATCAAACCATTTGCAAACTG 60.107 40.000 15.41 13.31 40.43 3.16
4499 8753 4.523943 AGAGCACTATCAAACCATTTGCAA 59.476 37.500 0.00 0.00 40.43 4.08
4619 8873 3.432252 CACCAGTGGACAACTTCGTTATC 59.568 47.826 18.40 0.00 36.83 1.75
4661 8915 2.670414 CTGAATCTTCTTCACTGCCGAC 59.330 50.000 0.00 0.00 0.00 4.79
4700 8954 4.201910 GCTATGAATGCACGGTGTTGTAAT 60.202 41.667 10.24 2.06 0.00 1.89
4823 9077 1.409427 CCAGGAGTAATCTGACGACCC 59.591 57.143 0.00 0.00 34.36 4.46
5318 9572 6.195600 TGGTGAAATAAGAACCTGGTAAGT 57.804 37.500 0.00 0.00 34.90 2.24
5516 9770 7.140522 TGATCCATCTTTCATGTCATCCTTA 57.859 36.000 0.00 0.00 0.00 2.69
5810 10064 3.755378 CAGACTGAAGCATTTTAGCACCT 59.245 43.478 0.00 0.00 36.85 4.00
5837 10091 9.131791 AGAAGTACCTTCAAGAAAGCAAAAATA 57.868 29.630 6.74 0.00 42.37 1.40
6014 10268 1.155042 CTGCAAGGAAGCTGACAGTC 58.845 55.000 3.99 0.00 35.73 3.51
6030 10284 0.674895 ATCAGCGGAACTTGTCCTGC 60.675 55.000 0.00 0.00 45.36 4.85
6830 11396 7.502226 GGTTATCACCAGATTTCATGATACCAA 59.498 37.037 0.00 0.00 43.61 3.67
6857 11423 6.787957 AGGGCTAAGCTAGAATAGTGGAATAA 59.212 38.462 0.00 0.00 41.93 1.40
6879 11445 8.669243 CATAGCAACTTAGAAAGACTTAAAGGG 58.331 37.037 8.77 3.74 0.00 3.95
6909 11477 4.458989 TGAAATTTACTGACATGAGGCACC 59.541 41.667 0.00 0.00 0.00 5.01
6910 11478 5.627499 TGAAATTTACTGACATGAGGCAC 57.373 39.130 0.00 0.00 0.00 5.01
6920 11488 7.864882 TCGTGAATTTGCAATGAAATTTACTGA 59.135 29.630 0.00 4.02 38.62 3.41
6926 11500 6.482973 AGGTTTCGTGAATTTGCAATGAAATT 59.517 30.769 0.00 0.00 38.07 1.82
6929 11503 4.942852 AGGTTTCGTGAATTTGCAATGAA 58.057 34.783 0.00 0.00 0.00 2.57
6945 11519 1.882623 CTTGGCACTGAGGAAGGTTTC 59.117 52.381 0.00 0.00 0.00 2.78
6962 11536 8.329203 ACTTCTACAAATCTTTCTAAGCCTTG 57.671 34.615 0.00 0.00 0.00 3.61
7039 11614 5.762825 ACTGCACCAAGCTATATGAAATG 57.237 39.130 0.00 0.00 45.94 2.32
7048 11623 3.981071 AGTCAATACTGCACCAAGCTA 57.019 42.857 0.00 0.00 45.94 3.32
7055 11630 5.673337 TTGAAGTCAAGTCAATACTGCAC 57.327 39.130 0.00 0.00 35.62 4.57
7106 11877 4.750941 TGACTCTTCCATTCCCCAAAATT 58.249 39.130 0.00 0.00 0.00 1.82
7113 11884 7.468141 AATTAACTTTGACTCTTCCATTCCC 57.532 36.000 0.00 0.00 0.00 3.97
7116 11887 9.354673 TCTCAAATTAACTTTGACTCTTCCATT 57.645 29.630 8.21 0.00 46.45 3.16
7141 11912 7.762159 AGCTAAGACTAGAGCAACAATTAGTTC 59.238 37.037 10.93 0.00 41.36 3.01
7149 11920 3.832490 TGGAAGCTAAGACTAGAGCAACA 59.168 43.478 10.93 4.91 41.36 3.33
7152 11923 4.141846 CCATTGGAAGCTAAGACTAGAGCA 60.142 45.833 10.93 0.00 41.36 4.26
7186 11957 7.514784 ACTGGTTAGTGGTTTTAATAACACC 57.485 36.000 10.08 1.54 35.34 4.16
7190 11961 8.983702 ACTGAACTGGTTAGTGGTTTTAATAA 57.016 30.769 0.00 0.00 37.19 1.40
7210 11981 8.682710 ACTCAGCACTAAATTTGTTTAACTGAA 58.317 29.630 0.00 0.00 30.74 3.02
7212 11983 8.128582 TCACTCAGCACTAAATTTGTTTAACTG 58.871 33.333 0.00 1.74 0.00 3.16
7249 12021 4.693566 CAGAGCAATACCCTGTCGTTTAAA 59.306 41.667 0.00 0.00 0.00 1.52
7250 12022 4.250464 CAGAGCAATACCCTGTCGTTTAA 58.750 43.478 0.00 0.00 0.00 1.52
7253 12025 1.066143 CCAGAGCAATACCCTGTCGTT 60.066 52.381 0.00 0.00 0.00 3.85
7254 12026 0.537188 CCAGAGCAATACCCTGTCGT 59.463 55.000 0.00 0.00 0.00 4.34
7255 12027 0.824109 TCCAGAGCAATACCCTGTCG 59.176 55.000 0.00 0.00 0.00 4.35
7256 12028 1.834263 ACTCCAGAGCAATACCCTGTC 59.166 52.381 0.00 0.00 0.00 3.51
7257 12029 1.958288 ACTCCAGAGCAATACCCTGT 58.042 50.000 0.00 0.00 0.00 4.00
7258 12030 3.244353 CCATACTCCAGAGCAATACCCTG 60.244 52.174 0.00 0.00 0.00 4.45
7259 12031 2.975489 CCATACTCCAGAGCAATACCCT 59.025 50.000 0.00 0.00 0.00 4.34
7260 12032 2.039084 CCCATACTCCAGAGCAATACCC 59.961 54.545 0.00 0.00 0.00 3.69
7261 12033 2.972713 TCCCATACTCCAGAGCAATACC 59.027 50.000 0.00 0.00 0.00 2.73
7262 12034 4.689612 TTCCCATACTCCAGAGCAATAC 57.310 45.455 0.00 0.00 0.00 1.89
7263 12035 5.191722 AGTTTTCCCATACTCCAGAGCAATA 59.808 40.000 0.00 0.00 0.00 1.90
7264 12036 4.018050 AGTTTTCCCATACTCCAGAGCAAT 60.018 41.667 0.00 0.00 0.00 3.56
7265 12037 3.330701 AGTTTTCCCATACTCCAGAGCAA 59.669 43.478 0.00 0.00 0.00 3.91
7280 12052 8.925700 CAAAAATGCATTACTTCCTAGTTTTCC 58.074 33.333 13.39 0.00 35.78 3.13
7326 12098 4.702131 CCTTTGGGATTGAGTTCCAAGTAG 59.298 45.833 0.00 0.00 41.00 2.57
7410 12182 7.142021 TCGTATCTGAGCTAGATTTTAAGCAG 58.858 38.462 9.89 0.00 43.68 4.24
7433 12205 5.051240 GGCACGTAGAATTTTATACCACTCG 60.051 44.000 0.00 0.00 0.00 4.18
7439 12211 8.083462 TGATCATGGCACGTAGAATTTTATAC 57.917 34.615 0.00 0.00 0.00 1.47
7441 12213 7.566760 TTGATCATGGCACGTAGAATTTTAT 57.433 32.000 0.00 0.00 0.00 1.40
7442 12214 6.993786 TTGATCATGGCACGTAGAATTTTA 57.006 33.333 0.00 0.00 0.00 1.52
7453 12225 6.262944 TCCTTGTGTATATTTGATCATGGCAC 59.737 38.462 0.00 1.76 0.00 5.01
7502 12274 1.967319 TCAGGAAAAGGTGCACTCAC 58.033 50.000 17.98 0.00 42.40 3.51
7531 12303 3.887621 TGATCCTGGAAAGAGTAACGG 57.112 47.619 0.00 0.00 0.00 4.44
7534 12306 4.597507 ACCACTTGATCCTGGAAAGAGTAA 59.402 41.667 13.68 0.00 0.00 2.24
7570 12342 1.094785 CATTTGCCCCCAGTACTTCG 58.905 55.000 0.00 0.00 0.00 3.79
7717 12489 6.891908 CCTTAATTCCCTTGGAGAAATCTTCA 59.108 38.462 0.00 0.00 31.21 3.02
7779 12556 0.961019 TTGCTGCTGGAAACCACATC 59.039 50.000 0.00 0.00 0.00 3.06
7790 12567 1.741706 CACTAAGGATGGTTGCTGCTG 59.258 52.381 0.00 0.00 0.00 4.41
7791 12568 1.340405 CCACTAAGGATGGTTGCTGCT 60.340 52.381 0.00 0.00 41.22 4.24
7844 12788 3.128589 AGAGAGAAGATGAGACGAACTGC 59.871 47.826 0.00 0.00 0.00 4.40
7851 12795 7.095271 CCAAGAAAACAAGAGAGAAGATGAGAC 60.095 40.741 0.00 0.00 0.00 3.36
7861 12805 3.381272 TGCCAACCAAGAAAACAAGAGAG 59.619 43.478 0.00 0.00 0.00 3.20
7919 12863 2.926200 CGTAATCTGAGCAAGTGACCTG 59.074 50.000 0.00 0.00 0.00 4.00
8012 12956 2.944129 AGCAAAAGACTTTACCAGCCA 58.056 42.857 0.00 0.00 0.00 4.75
8089 13039 1.666189 GCAGATTAAACTCAGGGCGAC 59.334 52.381 0.00 0.00 0.00 5.19
8090 13040 1.555075 AGCAGATTAAACTCAGGGCGA 59.445 47.619 0.00 0.00 0.00 5.54
8091 13041 1.667724 CAGCAGATTAAACTCAGGGCG 59.332 52.381 0.00 0.00 0.00 6.13
8124 13279 7.667043 TGTTAGCTGACTAAACGATTTCATT 57.333 32.000 10.29 0.00 40.04 2.57
8155 13310 8.717821 ACATAAATATACATGCATGAACGGTAC 58.282 33.333 32.75 0.00 0.00 3.34
8158 13313 9.706846 CATACATAAATATACATGCATGAACGG 57.293 33.333 32.75 6.56 30.55 4.44
8220 13417 2.549992 CGAGGTTGGACCATGTTCAGAA 60.550 50.000 0.00 0.00 41.95 3.02
8229 13427 4.980805 GTGCGCGAGGTTGGACCA 62.981 66.667 12.10 0.00 41.95 4.02
8270 13468 9.699410 AGATTTGATACAAGATATGTTCCCAAA 57.301 29.630 0.00 0.00 43.63 3.28
8271 13469 9.123902 CAGATTTGATACAAGATATGTTCCCAA 57.876 33.333 0.00 0.00 43.63 4.12
8281 13498 4.572389 GTCGTGCCAGATTTGATACAAGAT 59.428 41.667 0.00 0.00 0.00 2.40
8303 13520 4.041723 CGAATGCGTTTCAAAGGAAAAGT 58.958 39.130 0.00 0.00 44.18 2.66
8312 13529 4.631377 AGAATCAGATCGAATGCGTTTCAA 59.369 37.500 0.00 0.00 38.98 2.69
8313 13530 4.033243 CAGAATCAGATCGAATGCGTTTCA 59.967 41.667 0.00 0.00 38.98 2.69
8324 13542 5.873712 CCCTCCAAATATCAGAATCAGATCG 59.126 44.000 0.00 0.00 0.00 3.69
8333 13551 3.435457 CCATGTGCCCTCCAAATATCAGA 60.435 47.826 0.00 0.00 0.00 3.27
8345 13563 0.848735 ATACAGATGCCATGTGCCCT 59.151 50.000 1.08 0.00 40.16 5.19
8359 13577 5.907945 CGACGTGGTATACAAGAAGATACAG 59.092 44.000 5.01 0.00 31.34 2.74
8362 13580 4.261322 GGCGACGTGGTATACAAGAAGATA 60.261 45.833 5.01 0.00 32.54 1.98
8369 13587 0.173935 CTGGGCGACGTGGTATACAA 59.826 55.000 5.01 0.00 0.00 2.41
8402 13620 1.385756 GGACGGAGGGAGTAGCACTC 61.386 65.000 7.52 7.52 46.76 3.51
8403 13621 1.380112 GGACGGAGGGAGTAGCACT 60.380 63.158 0.00 0.00 0.00 4.40
8405 13623 2.439701 CGGACGGAGGGAGTAGCA 60.440 66.667 0.00 0.00 0.00 3.49
8406 13624 3.902086 GCGGACGGAGGGAGTAGC 61.902 72.222 0.00 0.00 0.00 3.58
8407 13625 2.439701 TGCGGACGGAGGGAGTAG 60.440 66.667 0.00 0.00 0.00 2.57
8420 13649 1.659211 GCGTTTTTGACACTAGTGCGG 60.659 52.381 22.90 0.00 0.00 5.69
8422 13651 2.544267 AGAGCGTTTTTGACACTAGTGC 59.456 45.455 22.90 15.35 0.00 4.40
8423 13652 4.795970 AAGAGCGTTTTTGACACTAGTG 57.204 40.909 21.44 21.44 0.00 2.74
8424 13653 8.773404 AATATAAGAGCGTTTTTGACACTAGT 57.227 30.769 0.00 0.00 0.00 2.57
8427 13656 8.612619 CCATAATATAAGAGCGTTTTTGACACT 58.387 33.333 0.00 0.00 0.00 3.55
8428 13657 7.855904 CCCATAATATAAGAGCGTTTTTGACAC 59.144 37.037 0.00 0.00 0.00 3.67
8430 13659 8.068380 GTCCCATAATATAAGAGCGTTTTTGAC 58.932 37.037 0.00 0.00 0.00 3.18
8431 13660 7.042321 CGTCCCATAATATAAGAGCGTTTTTGA 60.042 37.037 0.00 0.00 0.00 2.69
8432 13661 7.069569 CGTCCCATAATATAAGAGCGTTTTTG 58.930 38.462 0.00 0.00 0.00 2.44
8433 13662 6.204108 CCGTCCCATAATATAAGAGCGTTTTT 59.796 38.462 0.00 0.00 0.00 1.94
8434 13663 5.699458 CCGTCCCATAATATAAGAGCGTTTT 59.301 40.000 0.00 0.00 0.00 2.43
8451 13948 0.686441 CATGTACTCCCTCCGTCCCA 60.686 60.000 0.00 0.00 0.00 4.37
8452 13949 0.686769 ACATGTACTCCCTCCGTCCC 60.687 60.000 0.00 0.00 0.00 4.46
8453 13950 1.192428 AACATGTACTCCCTCCGTCC 58.808 55.000 0.00 0.00 0.00 4.79
8454 13951 4.341520 AGATTAACATGTACTCCCTCCGTC 59.658 45.833 0.00 0.00 0.00 4.79
8457 13954 4.654262 TGGAGATTAACATGTACTCCCTCC 59.346 45.833 24.77 22.07 44.29 4.30
8462 13959 4.683832 AGCGTGGAGATTAACATGTACTC 58.316 43.478 0.00 6.28 0.00 2.59
8494 13991 3.451540 TGCCCAATATAGGTTACACGACA 59.548 43.478 0.00 0.00 0.00 4.35
8497 13994 2.806244 GCTGCCCAATATAGGTTACACG 59.194 50.000 0.00 0.00 0.00 4.49
8502 13999 1.496429 AGCAGCTGCCCAATATAGGTT 59.504 47.619 34.39 9.07 43.38 3.50
8503 14000 1.143813 AGCAGCTGCCCAATATAGGT 58.856 50.000 34.39 9.65 43.38 3.08
8519 14016 2.585330 TGTGGAATTCTTCAAGCAGCA 58.415 42.857 5.23 0.00 0.00 4.41
8537 14034 6.378280 GTCAGGGGATTCAAAGATGTATTTGT 59.622 38.462 0.69 0.00 40.36 2.83
8538 14035 6.183360 GGTCAGGGGATTCAAAGATGTATTTG 60.183 42.308 0.00 0.00 40.75 2.32
8539 14036 5.893824 GGTCAGGGGATTCAAAGATGTATTT 59.106 40.000 0.00 0.00 0.00 1.40
8550 14047 4.017222 AGAATGATTTGGTCAGGGGATTCA 60.017 41.667 0.00 0.00 40.92 2.57
8578 14075 3.254960 CCATCCCTGATCACCCTAAGAT 58.745 50.000 0.00 0.00 0.00 2.40
8651 14317 3.813166 TCGCTTGTTCTTTCCTAAGTTGG 59.187 43.478 0.00 0.00 32.98 3.77
8652 14318 5.613358 ATCGCTTGTTCTTTCCTAAGTTG 57.387 39.130 0.00 0.00 32.98 3.16
8706 14425 6.374333 GGAAACAGTAAATTCAGACCATAGCA 59.626 38.462 0.00 0.00 0.00 3.49
8765 14487 1.124780 TGGTTTTGAGACCAGACGGA 58.875 50.000 0.00 0.00 44.53 4.69
8933 14656 4.042934 ACCCTTTTAAAAGAGGCTGCTAGA 59.957 41.667 26.11 0.00 38.28 2.43


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.