AutoCloner

Multiple sequence alignment - TraesCS7D01G152700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS7D01G152700	chr7D	100.000	3640	0	0	1	3640	101391324	101394963	0.000000e+00	6722.0
1	TraesCS7D01G152700	chr7D	89.394	66	6	1	2894	2958	101185894	101185959	8.380000e-12	82.4
2	TraesCS7D01G152700	chrUn	92.171	2925	160	35	1	2896	91485917	91483033	0.000000e+00	4069.0
3	TraesCS7D01G152700	chr7A	91.812	2919	179	37	1	2897	91017994	91020874	0.000000e+00	4012.0
4	TraesCS7D01G152700	chr7A	89.489	2350	172	38	4	2325	105928366	105930668	0.000000e+00	2902.0
5	TraesCS7D01G152700	chr7A	88.222	1783	168	24	1	1766	104498141	104499898	0.000000e+00	2091.0
6	TraesCS7D01G152700	chr7A	94.092	931	51	3	1892	2822	104800624	104801550	0.000000e+00	1411.0
7	TraesCS7D01G152700	chr7A	87.117	978	96	17	64	1034	103997176	103998130	0.000000e+00	1081.0
8	TraesCS7D01G152700	chr7A	93.524	664	36	6	2980	3640	104802965	104803624	0.000000e+00	981.0
9	TraesCS7D01G152700	chr7A	90.287	731	58	8	2168	2897	104535837	104536555	0.000000e+00	944.0
10	TraesCS7D01G152700	chr7A	88.293	820	46	19	1	792	104780249	104781046	0.000000e+00	937.0
11	TraesCS7D01G152700	chr7A	90.121	577	36	3	2315	2891	105932391	105932946	0.000000e+00	730.0
12	TraesCS7D01G152700	chr7A	92.547	483	23	4	3121	3594	104551836	104552314	0.000000e+00	680.0
13	TraesCS7D01G152700	chr7A	89.059	393	35	7	3084	3469	104276706	104277097	7.070000e-132	481.0
14	TraesCS7D01G152700	chr7A	88.747	391	38	5	3084	3469	104241805	104242194	1.180000e-129	473.0
15	TraesCS7D01G152700	chr7A	90.547	201	13	3	2894	3088	104551635	104551835	1.000000e-65	261.0
16	TraesCS7D01G152700	chr7A	89.051	137	14	1	2962	3098	105506525	105506390	6.250000e-38	169.0
17	TraesCS7D01G152700	chr7B	91.235	2841	187	32	76	2892	57911980	57914782	0.000000e+00	3810.0
18	TraesCS7D01G152700	chr7B	92.275	2382	137	28	76	2443	58242287	58244635	0.000000e+00	3336.0
19	TraesCS7D01G152700	chr7B	93.794	709	27	7	2894	3595	58247997	58248695	0.000000e+00	1050.0
20	TraesCS7D01G152700	chr7B	91.863	467	31	5	2427	2890	58244653	58245115	0.000000e+00	645.0
21	TraesCS7D01G152700	chr7B	92.308	130	9	1	2969	3098	700413784	700413912	2.230000e-42	183.0
22	TraesCS7D01G152700	chr7B	88.732	71	6	2	2894	2963	57698061	57698130	6.480000e-13	86.1
23	TraesCS7D01G152700	chr5D	87.619	1575	130	32	804	2362	402711229	402712754	0.000000e+00	1768.0
24	TraesCS7D01G152700	chr5D	81.434	851	122	29	798	1632	402567982	402568812	0.000000e+00	664.0
25	TraesCS7D01G152700	chr5D	90.141	142	14	0	2963	3104	27353852	27353993	6.210000e-43	185.0
26	TraesCS7D01G152700	chr5D	88.971	136	15	0	2963	3098	254521514	254521649	6.250000e-38	169.0
27	TraesCS7D01G152700	chr5B	87.001	1577	138	37	802	2361	482175777	482177303	0.000000e+00	1714.0
28	TraesCS7D01G152700	chr5B	82.238	822	118	23	798	1605	481948685	481949492	0.000000e+00	684.0
29	TraesCS7D01G152700	chr5B	82.095	821	119	23	798	1605	481859988	481860793	0.000000e+00	676.0
30	TraesCS7D01G152700	chr5B	86.863	510	46	17	2392	2896	482177399	482177892	5.310000e-153	551.0
31	TraesCS7D01G152700	chr6A	81.279	1314	178	44	1629	2896	91379489	91380780	0.000000e+00	1002.0
32	TraesCS7D01G152700	chr6D	81.303	1305	177	44	1629	2888	75281970	75283252	0.000000e+00	996.0
33	TraesCS7D01G152700	chr5A	86.989	538	42	14	2361	2896	508619814	508620325	6.780000e-162	580.0
34	TraesCS7D01G152700	chr1A	88.971	136	13	1	2963	3098	98236299	98236432	2.250000e-37	167.0
35	TraesCS7D01G152700	chr2A	88.235	136	14	2	2963	3096	68155068	68154933	1.050000e-35	161.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS7D01G152700	chr7D	101391324	101394963	3639	False	6722.0	6722	100.000	1	3640	1	chr7D.!!$F2	3639
1	TraesCS7D01G152700	chrUn	91483033	91485917	2884	True	4069.0	4069	92.171	1	2896	1	chrUn.!!$R1	2895
2	TraesCS7D01G152700	chr7A	91017994	91020874	2880	False	4012.0	4012	91.812	1	2897	1	chr7A.!!$F1	2896
3	TraesCS7D01G152700	chr7A	104498141	104499898	1757	False	2091.0	2091	88.222	1	1766	1	chr7A.!!$F5	1765
4	TraesCS7D01G152700	chr7A	105928366	105932946	4580	False	1816.0	2902	89.805	4	2891	2	chr7A.!!$F10	2887
5	TraesCS7D01G152700	chr7A	104800624	104803624	3000	False	1196.0	1411	93.808	1892	3640	2	chr7A.!!$F9	1748
6	TraesCS7D01G152700	chr7A	103997176	103998130	954	False	1081.0	1081	87.117	64	1034	1	chr7A.!!$F2	970
7	TraesCS7D01G152700	chr7A	104535837	104536555	718	False	944.0	944	90.287	2168	2897	1	chr7A.!!$F6	729
8	TraesCS7D01G152700	chr7A	104780249	104781046	797	False	937.0	937	88.293	1	792	1	chr7A.!!$F7	791
9	TraesCS7D01G152700	chr7A	104551635	104552314	679	False	470.5	680	91.547	2894	3594	2	chr7A.!!$F8	700
10	TraesCS7D01G152700	chr7B	57911980	57914782	2802	False	3810.0	3810	91.235	76	2892	1	chr7B.!!$F2	2816
11	TraesCS7D01G152700	chr7B	58242287	58248695	6408	False	1677.0	3336	92.644	76	3595	3	chr7B.!!$F4	3519
12	TraesCS7D01G152700	chr5D	402711229	402712754	1525	False	1768.0	1768	87.619	804	2362	1	chr5D.!!$F4	1558
13	TraesCS7D01G152700	chr5D	402567982	402568812	830	False	664.0	664	81.434	798	1632	1	chr5D.!!$F3	834
14	TraesCS7D01G152700	chr5B	482175777	482177892	2115	False	1132.5	1714	86.932	802	2896	2	chr5B.!!$F3	2094
15	TraesCS7D01G152700	chr5B	481948685	481949492	807	False	684.0	684	82.238	798	1605	1	chr5B.!!$F2	807
16	TraesCS7D01G152700	chr5B	481859988	481860793	805	False	676.0	676	82.095	798	1605	1	chr5B.!!$F1	807
17	TraesCS7D01G152700	chr6A	91379489	91380780	1291	False	1002.0	1002	81.279	1629	2896	1	chr6A.!!$F1	1267
18	TraesCS7D01G152700	chr6D	75281970	75283252	1282	False	996.0	996	81.303	1629	2888	1	chr6D.!!$F1	1259
19	TraesCS7D01G152700	chr5A	508619814	508620325	511	False	580.0	580	86.989	2361	2896	1	chr5A.!!$F1	535

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
678	728	0.172803	AGAAGCTCGCCGTCGTAATT	59.827	50.0	0.0	0.0	36.96	1.40	F
1760	1844	2.515926	TGCTCAGATATGACGGAAGC	57.484	50.0	0.0	0.0	0.00	3.86	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1780	1864	1.071385	GATCGATTGGCCACCATCTCT	59.929	52.381	3.88	0.0	31.53	3.10	R
3611	8825	0.188342	ACCAAATGGCTGGAGTGGTT	59.812	50.000	0.00	0.0	39.59	3.67	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
44	46	1.396996	AGTGAACACGTGTCTTTGTGC	59.603	47.619	23.61	8.26	39.71	4.57
53	55	0.724549	TGTCTTTGTGCGTGTGTGTC	59.275	50.000	0.00	0.00	0.00	3.67
56	58	0.589729	CTTTGTGCGTGTGTGTCTGC	60.590	55.000	0.00	0.00	0.00	4.26
74	112	4.879686	GCGCGCGTGTTTGTGTGT	62.880	61.111	32.35	0.00	32.62	3.72
78	116	1.651132	CGCGTGTTTGTGTGTGAGC	60.651	57.895	0.00	0.00	0.00	4.26
89	135	2.095008	TGTGTGTGAGCGAGAGAGAATC	60.095	50.000	0.00	0.00	0.00	2.52
143	193	1.217244	GTGTTCTCCCCACGCGTAT	59.783	57.895	13.44	0.00	0.00	3.06
338	388	3.512516	GCCACCGAGCCTTGCATC	61.513	66.667	0.00	0.00	0.00	3.91
339	389	3.197790	CCACCGAGCCTTGCATCG	61.198	66.667	0.42	0.42	38.65	3.84
340	390	3.869272	CACCGAGCCTTGCATCGC	61.869	66.667	1.89	0.00	37.61	4.58
553	603	2.098614	CTCTCTTCACCTGCAGCTCTA	58.901	52.381	8.66	0.00	0.00	2.43
609	659	1.531912	GTGTCGATCTTGGTCGTACG	58.468	55.000	9.53	9.53	42.07	3.67
678	728	0.172803	AGAAGCTCGCCGTCGTAATT	59.827	50.000	0.00	0.00	36.96	1.40
794	846	4.748102	TCTTATTGGCCGATAATGTTCGTC	59.252	41.667	23.22	0.00	37.42	4.20
938	993	8.064814	CACTCTGCTTTAACTTGAAGAACTAAC	58.935	37.037	0.00	0.00	0.00	2.34
978	1036	4.451096	GCGTGTGATCCTTTAGTGAAGAAA	59.549	41.667	0.00	0.00	37.57	2.52
1061	1120	5.987347	CCCAAGCCTGCTTATTTTTCATATG	59.013	40.000	3.71	0.00	34.50	1.78
1065	1124	7.174107	AGCCTGCTTATTTTTCATATGTTGT	57.826	32.000	1.90	0.00	0.00	3.32
1191	1251	6.925610	TCAATTCAGAAAATACGGGATGAG	57.074	37.500	0.00	0.00	0.00	2.90
1208	1268	8.375506	ACGGGATGAGATTGTATGTTATATGTT	58.624	33.333	0.00	0.00	0.00	2.71
1397	1467	5.723295	ACCCATCTCACATTTTAAACATGC	58.277	37.500	0.00	0.00	0.00	4.06
1492	1562	5.695816	GCCATATGTTTTCAAAAGTTCTGCA	59.304	36.000	1.24	0.00	0.00	4.41
1760	1844	2.515926	TGCTCAGATATGACGGAAGC	57.484	50.000	0.00	0.00	0.00	3.86
1780	1864	5.620738	AGCTACCAATTCATCTTGCTCTA	57.379	39.130	0.00	0.00	0.00	2.43
1985	2083	6.761099	AGATACACAGTACTACCTTCAGTG	57.239	41.667	0.00	0.00	0.00	3.66
1991	2089	4.519730	ACAGTACTACCTTCAGTGTCAGAC	59.480	45.833	0.00	0.00	0.00	3.51
2156	2263	5.427857	TCAATCCCTATAGGTCCTGGTTA	57.572	43.478	17.72	0.00	36.75	2.85
2211	2318	2.135933	GCTACGCTAACCATGCTTAGG	58.864	52.381	9.35	3.35	34.28	2.69
2341	4180	5.426504	TCCGTTGAAGTGTTAGGTTTGTTA	58.573	37.500	0.00	0.00	0.00	2.41
2395	4270	4.650131	ACTGATTAGGTCCCTAGTTAGCAC	59.350	45.833	7.34	0.00	29.27	4.40
2436	4384	5.550290	TGATTGACTATCATGTGTGTGTGT	58.450	37.500	0.00	0.00	38.35	3.72
2437	4385	5.409214	TGATTGACTATCATGTGTGTGTGTG	59.591	40.000	0.00	0.00	38.35	3.82
2439	4387	4.057432	TGACTATCATGTGTGTGTGTGTG	58.943	43.478	0.00	0.00	0.00	3.82
2480	4429	4.355549	TCTTCACCGGTCCTTTTCCTATA	58.644	43.478	2.59	0.00	0.00	1.31
2686	4638	6.003950	TGTTAAACTCCTGAATCTGGGAAAG	58.996	40.000	6.33	0.00	0.00	2.62
2727	4682	7.717875	ACCAGTTGCTTAGTCATTACAACTTTA	59.282	33.333	4.07	0.00	46.47	1.85
2816	4802	2.163412	TGACTCCTTGTGTTGTTGTTGC	59.837	45.455	0.00	0.00	0.00	4.17
2817	4803	2.423538	GACTCCTTGTGTTGTTGTTGCT	59.576	45.455	0.00	0.00	0.00	3.91
2818	4804	2.164219	ACTCCTTGTGTTGTTGTTGCTG	59.836	45.455	0.00	0.00	0.00	4.41
2819	4805	2.164219	CTCCTTGTGTTGTTGTTGCTGT	59.836	45.455	0.00	0.00	0.00	4.40
2844	5080	9.442033	GTTATTATGGTTGTTTATTAAGGTCGC	57.558	33.333	0.00	0.00	0.00	5.19
2867	5104	6.257193	CGCGATAAACCCTAGACTGTTATTTT	59.743	38.462	0.00	0.00	0.00	1.82
2913	8109	0.263172	TGGAAAGCCCTGGTGGAAAA	59.737	50.000	0.00	0.00	35.39	2.29
2917	8113	2.629017	AAGCCCTGGTGGAAAATGAT	57.371	45.000	0.00	0.00	35.39	2.45
2918	8114	2.149973	AGCCCTGGTGGAAAATGATC	57.850	50.000	0.00	0.00	35.39	2.92
3133	8336	5.885230	AGTCATGATCATTTGAGCGAAAA	57.115	34.783	5.16	0.00	32.18	2.29
3134	8337	5.877031	AGTCATGATCATTTGAGCGAAAAG	58.123	37.500	5.16	0.00	32.18	2.27
3154	8357	3.939066	AGGAAACCAAACATAGACTCGG	58.061	45.455	0.00	0.00	0.00	4.63
3160	8363	3.071892	ACCAAACATAGACTCGGGAACAA	59.928	43.478	0.00	0.00	0.00	2.83
3189	8392	7.039784	AGGTTGCACAAGCTTTAGAATTTATCA	60.040	33.333	9.20	0.00	45.80	2.15
3399	8611	3.367703	GGCAAACACATGAGGGAGAAATG	60.368	47.826	0.00	0.00	0.00	2.32
3403	8615	4.213564	ACACATGAGGGAGAAATGAGAC	57.786	45.455	0.00	0.00	0.00	3.36
3595	8809	2.550855	CCTCTTACCTTGTGCTGCTCAA	60.551	50.000	15.38	15.38	0.00	3.02
3596	8810	2.481952	CTCTTACCTTGTGCTGCTCAAC	59.518	50.000	12.62	0.00	0.00	3.18
3633	8847	2.301346	CCACTCCAGCCATTTGGTATC	58.699	52.381	0.00	0.00	39.35	2.24
3634	8848	1.942657	CACTCCAGCCATTTGGTATCG	59.057	52.381	0.00	0.00	39.35	2.92
3636	8850	2.026262	ACTCCAGCCATTTGGTATCGTT	60.026	45.455	0.00	0.00	39.35	3.85
3638	8852	4.196193	CTCCAGCCATTTGGTATCGTTAA	58.804	43.478	0.00	0.00	39.35	2.01
3639	8853	4.196193	TCCAGCCATTTGGTATCGTTAAG	58.804	43.478	0.00	0.00	39.35	1.85

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
58	60	3.010692	CACACACAAACACGCGCG	61.011	61.111	30.96	30.96	0.00	6.86
60	62	1.651132	GCTCACACACAAACACGCG	60.651	57.895	3.53	3.53	0.00	6.01
62	64	0.043053	CTCGCTCACACACAAACACG	60.043	55.000	0.00	0.00	0.00	4.49
67	79	1.318576	TCTCTCTCGCTCACACACAA	58.681	50.000	0.00	0.00	0.00	3.33
74	112	0.735471	CGTGGATTCTCTCTCGCTCA	59.265	55.000	0.00	0.00	0.00	4.26
78	116	2.638556	AACACGTGGATTCTCTCTCG	57.361	50.000	21.57	0.00	0.00	4.04
89	135	1.333619	CAGGAAGGACAAAACACGTGG	59.666	52.381	21.57	4.06	0.00	4.94
143	193	1.585006	GTGCGGAAAGAGACGAGGA	59.415	57.895	0.00	0.00	0.00	3.71
343	393	3.512516	GATGCAAGGCTCGGTGGC	61.513	66.667	0.00	0.00	42.15	5.01
344	394	3.197790	CGATGCAAGGCTCGGTGG	61.198	66.667	0.00	0.00	0.00	4.61
345	395	3.869272	GCGATGCAAGGCTCGGTG	61.869	66.667	9.30	0.00	35.48	4.94
444	494	0.250770	GGGGTTTCTGCGGAAGAACT	60.251	55.000	8.23	0.00	44.77	3.01
495	545	2.364448	GGAAGGAGCCGGAGAGGT	60.364	66.667	5.05	0.00	43.70	3.85
504	554	1.819905	CGAGGAAGGAGGAAGGAGC	59.180	63.158	0.00	0.00	0.00	4.70
553	603	1.144936	GCGGCTATGGTGAGAAGCT	59.855	57.895	0.00	0.00	36.48	3.74
633	683	3.596066	GAGCAGTTGCAGGAGCGGA	62.596	63.158	6.90	0.00	46.23	5.54
678	728	1.141019	GCGAGGAAGACGTATGGCA	59.859	57.895	0.00	0.00	0.00	4.92
785	837	4.382147	GGCTCCTCTCTTAAGACGAACATT	60.382	45.833	0.00	0.00	0.00	2.71
794	846	1.902508	TGGTGTGGCTCCTCTCTTAAG	59.097	52.381	0.00	0.00	0.00	1.85
938	993	2.345641	CACGCGTCTCCTGATACAAAAG	59.654	50.000	9.86	0.00	0.00	2.27
978	1036	4.172625	TGGCATTCCAAAGCACGT	57.827	50.000	0.00	0.00	39.99	4.49
1251	1314	8.537728	AGAGTTCACATCAGATTCTAGAAGAT	57.462	34.615	11.53	5.67	0.00	2.40
1397	1467	7.520119	TCTACAGCGTGATTGTAAATGTAAG	57.480	36.000	0.00	0.00	31.17	2.34
1607	1683	9.786105	CAACTTCTTGCCAAAACATTAATTTTT	57.214	25.926	0.00	0.00	29.17	1.94
1609	1685	7.416817	GCAACTTCTTGCCAAAACATTAATTT	58.583	30.769	0.00	0.00	46.27	1.82
1610	1686	6.958255	GCAACTTCTTGCCAAAACATTAATT	58.042	32.000	0.00	0.00	46.27	1.40
1611	1687	6.544038	GCAACTTCTTGCCAAAACATTAAT	57.456	33.333	0.00	0.00	46.27	1.40
1647	1730	3.937814	TGATGAGTACAAGAAATGCGGT	58.062	40.909	0.00	0.00	0.00	5.68
1760	1844	7.048629	TCTCTAGAGCAAGATGAATTGGTAG	57.951	40.000	15.35	0.00	40.78	3.18
1780	1864	1.071385	GATCGATTGGCCACCATCTCT	59.929	52.381	3.88	0.00	31.53	3.10
1985	2083	6.476243	AAACATTTGTACATACCGTCTGAC	57.524	37.500	0.00	0.00	0.00	3.51
2156	2263	7.218228	TGTTATCATCTCAATGCACAAAACT	57.782	32.000	0.00	0.00	32.58	2.66
2211	2318	5.167845	TGACACCTTGAAAACTCTTTTTGC	58.832	37.500	0.00	0.00	34.94	3.68
2341	4180	8.258007	TCTAAGATAACCACTGATCGAATGTTT	58.742	33.333	0.00	0.00	0.00	2.83
2395	4270	8.517878	AGTCAATCAAACATCAATTCTGGTTAG	58.482	33.333	0.00	0.00	0.00	2.34
2427	4335	1.804151	AGTCAACACACACACACACAC	59.196	47.619	0.00	0.00	0.00	3.82
2436	4384	3.081061	AGTGCTCAAAAGTCAACACACA	58.919	40.909	0.00	0.00	0.00	3.72
2437	4385	3.764885	AGTGCTCAAAAGTCAACACAC	57.235	42.857	0.00	0.00	0.00	3.82
2439	4387	4.622701	AGAAGTGCTCAAAAGTCAACAC	57.377	40.909	0.00	0.00	0.00	3.32
2738	4695	9.423061	GGTAGCAACACAATTAATTTTCTCAAT	57.577	29.630	0.00	0.00	0.00	2.57
2818	4804	9.442033	GCGACCTTAATAAACAACCATAATAAC	57.558	33.333	0.00	0.00	0.00	1.89
2819	4805	8.336806	CGCGACCTTAATAAACAACCATAATAA	58.663	33.333	0.00	0.00	0.00	1.40
2867	5104	6.654582	TGCAACTGAAGCATCATAGAGTTTTA	59.345	34.615	0.00	0.00	37.02	1.52
2913	8109	5.564550	AGGCTTTTACAGTGAACAGATCAT	58.435	37.500	0.00	0.00	40.97	2.45
2917	8113	4.755123	GCTAAGGCTTTTACAGTGAACAGA	59.245	41.667	4.45	0.00	35.22	3.41
2918	8114	4.515191	TGCTAAGGCTTTTACAGTGAACAG	59.485	41.667	4.45	0.00	39.59	3.16
3109	8312	6.983474	TTTCGCTCAAATGATCATGACTTA	57.017	33.333	9.46	0.00	0.00	2.24
3114	8317	5.239359	TCCTTTTCGCTCAAATGATCATG	57.761	39.130	9.46	0.00	0.00	3.07
3115	8318	5.902613	TTCCTTTTCGCTCAAATGATCAT	57.097	34.783	1.18	1.18	0.00	2.45
3117	8320	4.859245	GGTTTCCTTTTCGCTCAAATGATC	59.141	41.667	0.00	0.00	0.00	2.92
3133	8336	3.307480	CCCGAGTCTATGTTTGGTTTCCT	60.307	47.826	0.00	0.00	0.00	3.36
3134	8337	3.007635	CCCGAGTCTATGTTTGGTTTCC	58.992	50.000	0.00	0.00	0.00	3.13
3154	8357	2.351418	GCTTGTGCAACCTTTTTGTTCC	59.649	45.455	0.00	0.00	39.41	3.62
3160	8363	5.337578	TTCTAAAGCTTGTGCAACCTTTT	57.662	34.783	0.00	0.00	42.74	2.27
3399	8611	7.880713	TCCATAGTATGATAGTCTGTCTGTCTC	59.119	40.741	11.91	0.00	35.69	3.36
3403	8615	6.127758	GCCTCCATAGTATGATAGTCTGTCTG	60.128	46.154	11.91	0.00	0.00	3.51
3442	8654	8.704849	TTAATGTAACCTAATCCATTCCCATG	57.295	34.615	0.00	0.00	0.00	3.66
3596	8810	1.654105	GTGGTTAACTGACGCTCATCG	59.346	52.381	5.42	0.00	45.38	3.84
3611	8825	0.188342	ACCAAATGGCTGGAGTGGTT	59.812	50.000	0.00	0.00	39.59	3.67
3614	8828	1.942657	CGATACCAAATGGCTGGAGTG	59.057	52.381	0.00	0.00	38.96	3.51

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.