Multiple sequence alignment - TraesCS7D01G152100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G152100 chr7D 100.000 4022 0 0 1 4022 101035165 101039186 0.000000e+00 7428
1 TraesCS7D01G152100 chr7D 86.498 474 47 10 501 959 552061318 552061789 4.640000e-139 505
2 TraesCS7D01G152100 chr7D 85.350 471 39 20 3 459 431339835 431339381 1.020000e-125 460
3 TraesCS7D01G152100 chr7B 93.778 3102 134 23 960 4022 57456679 57459760 0.000000e+00 4604
4 TraesCS7D01G152100 chr7B 88.553 463 37 10 513 959 634772545 634772083 7.600000e-152 547
5 TraesCS7D01G152100 chr7A 91.484 2830 171 36 984 3774 103140572 103143370 0.000000e+00 3827
6 TraesCS7D01G152100 chr7A 89.107 459 36 7 513 959 191820909 191820453 3.510000e-155 558
7 TraesCS7D01G152100 chr7A 85.439 467 53 13 2 459 7144185 7143725 4.710000e-129 472
8 TraesCS7D01G152100 chr2B 90.753 465 30 6 508 959 463923496 463923032 3.440000e-170 608
9 TraesCS7D01G152100 chr2B 80.625 480 52 21 502 967 126946344 126946796 2.320000e-87 333
10 TraesCS7D01G152100 chr3D 90.749 454 33 6 513 959 234811097 234810646 7.440000e-167 597
11 TraesCS7D01G152100 chr3D 85.837 466 49 10 3 461 89632054 89632509 2.810000e-131 479
12 TraesCS7D01G152100 chr1B 90.435 460 31 6 513 959 108867101 108867560 9.620000e-166 593
13 TraesCS7D01G152100 chr1B 88.987 454 39 10 513 959 362597360 362597809 5.870000e-153 551
14 TraesCS7D01G152100 chr3B 89.633 463 33 7 513 962 718348971 718349431 3.490000e-160 575
15 TraesCS7D01G152100 chr3B 89.670 455 40 7 513 962 4207606 4207154 1.250000e-159 573
16 TraesCS7D01G152100 chr1A 89.381 452 43 3 511 959 480589061 480588612 7.550000e-157 564
17 TraesCS7D01G152100 chr1A 84.979 466 48 19 3 459 302012608 302012156 1.700000e-123 453
18 TraesCS7D01G152100 chr4A 85.097 463 57 9 4 459 88085563 88086020 2.830000e-126 462
19 TraesCS7D01G152100 chr2A 85.193 466 49 14 3 459 81105672 81105218 1.020000e-125 460
20 TraesCS7D01G152100 chr2A 86.822 129 17 0 504 632 535150882 535150754 1.170000e-30 145
21 TraesCS7D01G152100 chr3A 85.281 462 47 17 3 459 738233302 738233747 1.320000e-124 457
22 TraesCS7D01G152100 chr3A 84.979 466 51 12 6 459 180055560 180055102 4.740000e-124 455
23 TraesCS7D01G152100 chr3A 84.861 469 50 17 3 459 67904229 67904688 1.700000e-123 453
24 TraesCS7D01G152100 chr5D 82.707 133 23 0 500 632 9945124 9944992 7.060000e-23 119


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G152100 chr7D 101035165 101039186 4021 False 7428 7428 100.000 1 4022 1 chr7D.!!$F1 4021
1 TraesCS7D01G152100 chr7B 57456679 57459760 3081 False 4604 4604 93.778 960 4022 1 chr7B.!!$F1 3062
2 TraesCS7D01G152100 chr7A 103140572 103143370 2798 False 3827 3827 91.484 984 3774 1 chr7A.!!$F1 2790

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
181 182 0.034059 AACCGTGCCTCTCACTGAAG 59.966 55.0 0.00 0.0 43.46 3.02 F
569 570 0.097674 GCTTGTGCTAATCGTGCCTG 59.902 55.0 0.00 0.0 36.03 4.85 F
1635 1645 0.250901 AAGGACTGGCGCTGTTCAAT 60.251 50.0 7.64 0.0 0.00 2.57 F
1851 1861 0.598065 GGCGGTTGTTTGATGAGCTT 59.402 50.0 0.00 0.0 0.00 3.74 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1635 1645 0.820226 CACGCTCTTCCCTCATCTCA 59.180 55.000 0.00 0.00 0.00 3.27 R
2265 2275 0.320247 CTACGGAGATGGCATCAGGC 60.320 60.000 27.93 16.44 43.74 4.85 R
2502 2513 1.069765 AGAATCGCCCTGCATACCG 59.930 57.895 0.00 0.00 0.00 4.02 R
3511 3570 1.372128 CGCTGGAGGCAAACAAAGC 60.372 57.895 0.00 0.00 41.91 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 3.963383 TTTTTCGTTTCTGAGAGGCAC 57.037 42.857 0.00 0.00 0.00 5.01
29 30 1.497991 TTTCGTTTCTGAGAGGCACG 58.502 50.000 4.99 4.99 0.00 5.34
30 31 0.319555 TTCGTTTCTGAGAGGCACGG 60.320 55.000 9.92 0.00 0.00 4.94
31 32 2.383527 CGTTTCTGAGAGGCACGGC 61.384 63.158 3.75 0.00 0.00 5.68
65 66 3.181367 GCACAACCATGCCTCTCG 58.819 61.111 0.00 0.00 39.86 4.04
66 67 3.044059 GCACAACCATGCCTCTCGC 62.044 63.158 0.00 0.00 39.86 5.03
67 68 2.434884 ACAACCATGCCTCTCGCG 60.435 61.111 0.00 0.00 42.08 5.87
68 69 3.197790 CAACCATGCCTCTCGCGG 61.198 66.667 6.13 0.00 42.08 6.46
69 70 3.390521 AACCATGCCTCTCGCGGA 61.391 61.111 6.13 1.01 42.08 5.54
70 71 2.954684 AACCATGCCTCTCGCGGAA 61.955 57.895 6.13 0.00 42.08 4.30
71 72 2.587194 CCATGCCTCTCGCGGAAG 60.587 66.667 6.13 3.71 42.08 3.46
83 84 4.914291 CGGAAGCAAAACCGTGAC 57.086 55.556 0.00 0.00 43.53 3.67
84 85 2.317230 CGGAAGCAAAACCGTGACT 58.683 52.632 0.00 0.00 43.53 3.41
85 86 0.234884 CGGAAGCAAAACCGTGACTC 59.765 55.000 0.00 0.00 43.53 3.36
86 87 1.594331 GGAAGCAAAACCGTGACTCT 58.406 50.000 0.00 0.00 0.00 3.24
87 88 1.531578 GGAAGCAAAACCGTGACTCTC 59.468 52.381 0.00 0.00 0.00 3.20
88 89 1.192534 GAAGCAAAACCGTGACTCTCG 59.807 52.381 0.00 0.00 0.00 4.04
89 90 1.204312 GCAAAACCGTGACTCTCGC 59.796 57.895 0.00 0.00 0.00 5.03
97 98 3.491581 GTGACTCTCGCGAAAGGAA 57.508 52.632 14.96 0.00 0.00 3.36
98 99 1.779569 GTGACTCTCGCGAAAGGAAA 58.220 50.000 14.96 0.00 0.00 3.13
99 100 2.132762 GTGACTCTCGCGAAAGGAAAA 58.867 47.619 14.96 0.00 0.00 2.29
100 101 2.542595 GTGACTCTCGCGAAAGGAAAAA 59.457 45.455 14.96 0.00 0.00 1.94
140 141 3.963383 TTTTCTGTTTTCGAGAGGCAC 57.037 42.857 0.00 0.00 0.00 5.01
141 142 1.497991 TTCTGTTTTCGAGAGGCACG 58.502 50.000 0.00 0.00 0.00 5.34
142 143 0.319555 TCTGTTTTCGAGAGGCACGG 60.320 55.000 0.00 0.00 0.00 4.94
143 144 1.901650 CTGTTTTCGAGAGGCACGGC 61.902 60.000 0.00 0.00 0.00 5.68
158 159 3.479269 GGCCGTGACTCGCGAAAG 61.479 66.667 11.33 1.10 39.94 2.62
176 177 3.642755 CACAACCGTGCCTCTCAC 58.357 61.111 0.00 0.00 42.23 3.51
177 178 1.069765 CACAACCGTGCCTCTCACT 59.930 57.895 0.00 0.00 43.46 3.41
178 179 1.069765 ACAACCGTGCCTCTCACTG 59.930 57.895 0.00 0.00 43.46 3.66
179 180 1.367471 CAACCGTGCCTCTCACTGA 59.633 57.895 0.00 0.00 43.46 3.41
180 181 0.249868 CAACCGTGCCTCTCACTGAA 60.250 55.000 0.00 0.00 43.46 3.02
181 182 0.034059 AACCGTGCCTCTCACTGAAG 59.966 55.000 0.00 0.00 43.46 3.02
182 183 1.079543 CCGTGCCTCTCACTGAAGG 60.080 63.158 3.94 3.94 43.46 3.46
183 184 1.079543 CGTGCCTCTCACTGAAGGG 60.080 63.158 8.49 2.42 43.46 3.95
184 185 1.536073 CGTGCCTCTCACTGAAGGGA 61.536 60.000 8.49 4.31 43.46 4.20
185 186 0.687354 GTGCCTCTCACTGAAGGGAA 59.313 55.000 8.49 0.00 42.38 3.97
186 187 1.072331 GTGCCTCTCACTGAAGGGAAA 59.928 52.381 8.49 0.00 42.38 3.13
187 188 1.072331 TGCCTCTCACTGAAGGGAAAC 59.928 52.381 8.49 0.00 0.00 2.78
200 201 2.373938 GGAAACCATGACTCTCGCG 58.626 57.895 0.00 0.00 0.00 5.87
201 202 0.108804 GGAAACCATGACTCTCGCGA 60.109 55.000 9.26 9.26 0.00 5.87
202 203 1.671850 GGAAACCATGACTCTCGCGAA 60.672 52.381 11.33 0.00 0.00 4.70
203 204 2.066262 GAAACCATGACTCTCGCGAAA 58.934 47.619 11.33 0.00 0.00 3.46
204 205 1.714794 AACCATGACTCTCGCGAAAG 58.285 50.000 11.33 9.68 0.00 2.62
205 206 0.108615 ACCATGACTCTCGCGAAAGG 60.109 55.000 14.96 5.92 0.00 3.11
206 207 0.173481 CCATGACTCTCGCGAAAGGA 59.827 55.000 14.96 5.33 0.00 3.36
207 208 1.404181 CCATGACTCTCGCGAAAGGAA 60.404 52.381 14.96 1.27 0.00 3.36
208 209 2.337583 CATGACTCTCGCGAAAGGAAA 58.662 47.619 14.96 0.00 0.00 3.13
209 210 2.519377 TGACTCTCGCGAAAGGAAAA 57.481 45.000 14.96 0.00 0.00 2.29
210 211 2.828877 TGACTCTCGCGAAAGGAAAAA 58.171 42.857 14.96 0.00 0.00 1.94
274 275 4.426736 AAAAACTAAGGAAGACCGGTGA 57.573 40.909 14.63 0.00 41.83 4.02
275 276 3.679824 AAACTAAGGAAGACCGGTGAG 57.320 47.619 14.63 0.00 41.83 3.51
276 277 2.599408 ACTAAGGAAGACCGGTGAGA 57.401 50.000 14.63 0.00 41.83 3.27
277 278 2.885616 ACTAAGGAAGACCGGTGAGAA 58.114 47.619 14.63 0.00 41.83 2.87
278 279 3.236896 ACTAAGGAAGACCGGTGAGAAA 58.763 45.455 14.63 0.00 41.83 2.52
279 280 2.545537 AAGGAAGACCGGTGAGAAAC 57.454 50.000 14.63 0.00 41.83 2.78
280 281 0.685660 AGGAAGACCGGTGAGAAACC 59.314 55.000 14.63 6.78 46.60 3.27
291 292 3.661758 GTGAGAAACCAAAACGTCGAA 57.338 42.857 0.00 0.00 0.00 3.71
292 293 4.006026 GTGAGAAACCAAAACGTCGAAA 57.994 40.909 0.00 0.00 0.00 3.46
293 294 4.405196 GTGAGAAACCAAAACGTCGAAAA 58.595 39.130 0.00 0.00 0.00 2.29
294 295 4.852650 GTGAGAAACCAAAACGTCGAAAAA 59.147 37.500 0.00 0.00 0.00 1.94
311 312 2.971660 AAAACCCAGGAACAAAACCG 57.028 45.000 0.00 0.00 0.00 4.44
312 313 1.855295 AAACCCAGGAACAAAACCGT 58.145 45.000 0.00 0.00 0.00 4.83
313 314 1.855295 AACCCAGGAACAAAACCGTT 58.145 45.000 0.00 0.00 0.00 4.44
314 315 1.855295 ACCCAGGAACAAAACCGTTT 58.145 45.000 0.00 0.00 0.00 3.60
315 316 3.015675 ACCCAGGAACAAAACCGTTTA 57.984 42.857 0.00 0.00 0.00 2.01
316 317 3.363627 ACCCAGGAACAAAACCGTTTAA 58.636 40.909 0.00 0.00 0.00 1.52
317 318 3.768215 ACCCAGGAACAAAACCGTTTAAA 59.232 39.130 0.00 0.00 0.00 1.52
318 319 4.406326 ACCCAGGAACAAAACCGTTTAAAT 59.594 37.500 0.00 0.00 0.00 1.40
319 320 4.747605 CCCAGGAACAAAACCGTTTAAATG 59.252 41.667 0.00 0.04 0.00 2.32
320 321 4.747605 CCAGGAACAAAACCGTTTAAATGG 59.252 41.667 22.49 22.49 41.00 3.16
321 322 4.210328 CAGGAACAAAACCGTTTAAATGGC 59.790 41.667 23.74 7.70 38.70 4.40
322 323 3.495377 GGAACAAAACCGTTTAAATGGCC 59.505 43.478 23.74 12.51 38.70 5.36
323 324 2.745102 ACAAAACCGTTTAAATGGCCG 58.255 42.857 23.74 13.10 38.70 6.13
324 325 2.361438 ACAAAACCGTTTAAATGGCCGA 59.639 40.909 23.74 0.00 38.70 5.54
325 326 3.181478 ACAAAACCGTTTAAATGGCCGAA 60.181 39.130 23.74 0.00 38.70 4.30
326 327 3.729862 AAACCGTTTAAATGGCCGAAA 57.270 38.095 23.74 0.00 38.70 3.46
327 328 3.729862 AACCGTTTAAATGGCCGAAAA 57.270 38.095 23.74 0.00 38.70 2.29
328 329 3.015934 ACCGTTTAAATGGCCGAAAAC 57.984 42.857 23.74 5.18 38.70 2.43
330 331 1.384076 CGTTTAAATGGCCGAAAACGC 59.616 47.619 22.68 2.90 44.94 4.84
331 332 1.384076 GTTTAAATGGCCGAAAACGCG 59.616 47.619 3.53 3.53 0.00 6.01
332 333 0.592148 TTAAATGGCCGAAAACGCGT 59.408 45.000 5.58 5.58 0.00 6.01
333 334 0.110147 TAAATGGCCGAAAACGCGTG 60.110 50.000 14.98 0.00 0.00 5.34
334 335 3.889831 AATGGCCGAAAACGCGTGC 62.890 57.895 14.98 11.86 0.00 5.34
337 338 4.653252 GCCGAAAACGCGTGCGAA 62.653 61.111 24.61 0.00 42.83 4.70
338 339 2.052941 CCGAAAACGCGTGCGAAA 60.053 55.556 24.61 0.00 42.83 3.46
339 340 1.651730 CCGAAAACGCGTGCGAAAA 60.652 52.632 24.61 0.00 42.83 2.29
340 341 1.194896 CCGAAAACGCGTGCGAAAAA 61.195 50.000 24.61 0.00 42.83 1.94
341 342 0.153797 CGAAAACGCGTGCGAAAAAG 59.846 50.000 22.32 5.41 42.83 2.27
342 343 1.185189 GAAAACGCGTGCGAAAAAGT 58.815 45.000 22.32 0.00 42.83 2.66
343 344 2.365037 GAAAACGCGTGCGAAAAAGTA 58.635 42.857 22.32 0.00 42.83 2.24
344 345 2.455295 AAACGCGTGCGAAAAAGTAA 57.545 40.000 22.32 0.00 42.83 2.24
345 346 2.455295 AACGCGTGCGAAAAAGTAAA 57.545 40.000 22.32 0.00 42.83 2.01
346 347 2.455295 ACGCGTGCGAAAAAGTAAAA 57.545 40.000 22.32 0.00 42.83 1.52
347 348 2.783333 ACGCGTGCGAAAAAGTAAAAA 58.217 38.095 22.32 0.00 42.83 1.94
369 370 4.568152 AACACAAAATCTGGAGGAAACG 57.432 40.909 0.00 0.00 0.00 3.60
370 371 2.293399 ACACAAAATCTGGAGGAAACGC 59.707 45.455 0.00 0.00 0.00 4.84
378 379 1.284715 GGAGGAAACGCCCAAAACG 59.715 57.895 0.00 0.00 45.88 3.60
379 380 1.371267 GAGGAAACGCCCAAAACGC 60.371 57.895 0.00 0.00 37.37 4.84
394 395 2.499520 CGCGACACGTGGCAAATG 60.500 61.111 23.63 5.86 36.87 2.32
395 396 2.126888 GCGACACGTGGCAAATGG 60.127 61.111 23.63 5.43 34.31 3.16
396 397 2.126888 CGACACGTGGCAAATGGC 60.127 61.111 23.63 0.00 43.74 4.40
397 398 2.616330 CGACACGTGGCAAATGGCT 61.616 57.895 23.63 0.00 44.01 4.75
398 399 1.295357 CGACACGTGGCAAATGGCTA 61.295 55.000 23.63 0.00 44.01 3.93
399 400 0.878416 GACACGTGGCAAATGGCTAA 59.122 50.000 18.77 0.00 44.01 3.09
400 401 0.881118 ACACGTGGCAAATGGCTAAG 59.119 50.000 21.57 2.59 44.01 2.18
401 402 1.164411 CACGTGGCAAATGGCTAAGA 58.836 50.000 7.95 0.00 44.01 2.10
402 403 1.131126 CACGTGGCAAATGGCTAAGAG 59.869 52.381 7.95 0.00 44.01 2.85
403 404 0.099436 CGTGGCAAATGGCTAAGAGC 59.901 55.000 8.50 0.00 44.01 4.09
404 405 0.099436 GTGGCAAATGGCTAAGAGCG 59.901 55.000 8.50 0.00 43.62 5.03
405 406 1.064783 GGCAAATGGCTAAGAGCGC 59.935 57.895 0.00 0.00 43.62 5.92
406 407 1.656818 GGCAAATGGCTAAGAGCGCA 61.657 55.000 11.47 0.00 43.62 6.09
407 408 0.524180 GCAAATGGCTAAGAGCGCAC 60.524 55.000 11.47 2.25 43.62 5.34
408 409 0.099436 CAAATGGCTAAGAGCGCACC 59.901 55.000 11.47 0.00 43.62 5.01
409 410 0.322456 AAATGGCTAAGAGCGCACCA 60.322 50.000 11.47 7.49 43.62 4.17
410 411 0.322456 AATGGCTAAGAGCGCACCAA 60.322 50.000 11.47 0.00 43.62 3.67
411 412 0.322456 ATGGCTAAGAGCGCACCAAA 60.322 50.000 11.47 0.00 43.62 3.28
412 413 0.322456 TGGCTAAGAGCGCACCAAAT 60.322 50.000 11.47 0.00 43.62 2.32
413 414 0.099436 GGCTAAGAGCGCACCAAATG 59.901 55.000 11.47 0.00 43.62 2.32
414 415 1.086696 GCTAAGAGCGCACCAAATGA 58.913 50.000 11.47 0.00 0.00 2.57
415 416 1.202076 GCTAAGAGCGCACCAAATGAC 60.202 52.381 11.47 0.00 0.00 3.06
416 417 1.061131 CTAAGAGCGCACCAAATGACG 59.939 52.381 11.47 0.00 0.00 4.35
419 420 3.173853 GCGCACCAAATGACGCTA 58.826 55.556 0.30 0.00 44.89 4.26
420 421 1.499949 GCGCACCAAATGACGCTAA 59.500 52.632 0.30 0.00 44.89 3.09
421 422 0.098728 GCGCACCAAATGACGCTAAT 59.901 50.000 0.30 0.00 44.89 1.73
422 423 1.467374 GCGCACCAAATGACGCTAATT 60.467 47.619 0.30 0.00 44.89 1.40
423 424 2.176369 CGCACCAAATGACGCTAATTG 58.824 47.619 0.00 0.00 0.00 2.32
424 425 2.414029 CGCACCAAATGACGCTAATTGT 60.414 45.455 0.00 0.00 0.00 2.71
425 426 3.574614 GCACCAAATGACGCTAATTGTT 58.425 40.909 0.00 0.00 0.00 2.83
426 427 3.364621 GCACCAAATGACGCTAATTGTTG 59.635 43.478 0.00 0.00 0.00 3.33
427 428 3.364621 CACCAAATGACGCTAATTGTTGC 59.635 43.478 0.00 0.00 0.00 4.17
434 435 3.905900 GCTAATTGTTGCGAGGCTC 57.094 52.632 3.87 3.87 0.00 4.70
435 436 0.378610 GCTAATTGTTGCGAGGCTCC 59.621 55.000 9.32 2.37 0.00 4.70
436 437 1.017387 CTAATTGTTGCGAGGCTCCC 58.983 55.000 9.32 0.00 0.00 4.30
437 438 0.742990 TAATTGTTGCGAGGCTCCCG 60.743 55.000 9.32 0.00 0.00 5.14
438 439 2.463589 AATTGTTGCGAGGCTCCCGA 62.464 55.000 9.32 0.00 0.00 5.14
439 440 2.463589 ATTGTTGCGAGGCTCCCGAA 62.464 55.000 9.32 0.00 0.00 4.30
440 441 2.815647 GTTGCGAGGCTCCCGAAG 60.816 66.667 9.32 0.00 0.00 3.79
453 454 4.470876 CGAAGGAGCGCTCGTTAA 57.529 55.556 36.96 0.00 37.75 2.01
454 455 1.989163 CGAAGGAGCGCTCGTTAAC 59.011 57.895 36.96 26.47 37.75 2.01
455 456 0.456312 CGAAGGAGCGCTCGTTAACT 60.456 55.000 36.96 23.16 37.75 2.24
456 457 1.202110 CGAAGGAGCGCTCGTTAACTA 60.202 52.381 36.96 0.00 37.75 2.24
457 458 2.452105 GAAGGAGCGCTCGTTAACTAG 58.548 52.381 36.96 3.24 37.75 2.57
458 459 1.461559 AGGAGCGCTCGTTAACTAGT 58.538 50.000 29.81 3.95 0.00 2.57
459 460 1.132643 AGGAGCGCTCGTTAACTAGTG 59.867 52.381 29.81 14.56 0.00 2.74
460 461 1.546834 GAGCGCTCGTTAACTAGTGG 58.453 55.000 23.61 8.71 0.00 4.00
461 462 0.172803 AGCGCTCGTTAACTAGTGGG 59.827 55.000 18.92 8.44 0.00 4.61
462 463 1.419107 GCGCTCGTTAACTAGTGGGC 61.419 60.000 18.92 13.31 33.94 5.36
463 464 0.804933 CGCTCGTTAACTAGTGGGCC 60.805 60.000 11.77 0.00 0.00 5.80
464 465 0.535797 GCTCGTTAACTAGTGGGCCT 59.464 55.000 4.53 0.00 0.00 5.19
465 466 1.066358 GCTCGTTAACTAGTGGGCCTT 60.066 52.381 4.53 0.00 0.00 4.35
466 467 2.167075 GCTCGTTAACTAGTGGGCCTTA 59.833 50.000 4.53 0.00 0.00 2.69
467 468 3.737355 GCTCGTTAACTAGTGGGCCTTAG 60.737 52.174 4.53 9.52 0.00 2.18
468 469 2.167075 TCGTTAACTAGTGGGCCTTAGC 59.833 50.000 4.53 0.00 38.76 3.09
469 470 2.093869 CGTTAACTAGTGGGCCTTAGCA 60.094 50.000 4.53 0.00 42.56 3.49
470 471 3.268330 GTTAACTAGTGGGCCTTAGCAC 58.732 50.000 4.53 1.47 45.43 4.40
471 472 1.657804 AACTAGTGGGCCTTAGCACT 58.342 50.000 15.49 15.49 45.43 4.40
472 473 1.657804 ACTAGTGGGCCTTAGCACTT 58.342 50.000 16.24 0.00 45.43 3.16
473 474 1.555533 ACTAGTGGGCCTTAGCACTTC 59.444 52.381 16.24 0.00 45.43 3.01
474 475 1.555075 CTAGTGGGCCTTAGCACTTCA 59.445 52.381 16.24 0.80 45.43 3.02
475 476 0.995024 AGTGGGCCTTAGCACTTCAT 59.005 50.000 4.53 0.00 45.43 2.57
476 477 1.355720 AGTGGGCCTTAGCACTTCATT 59.644 47.619 4.53 0.00 45.43 2.57
477 478 2.576191 AGTGGGCCTTAGCACTTCATTA 59.424 45.455 4.53 0.00 45.43 1.90
478 479 2.683362 GTGGGCCTTAGCACTTCATTAC 59.317 50.000 4.53 0.00 45.43 1.89
479 480 2.298610 GGGCCTTAGCACTTCATTACC 58.701 52.381 0.84 0.00 40.27 2.85
480 481 2.092375 GGGCCTTAGCACTTCATTACCT 60.092 50.000 0.84 0.00 40.27 3.08
481 482 3.206964 GGCCTTAGCACTTCATTACCTC 58.793 50.000 0.00 0.00 42.56 3.85
482 483 2.866762 GCCTTAGCACTTCATTACCTCG 59.133 50.000 0.00 0.00 39.53 4.63
483 484 3.679083 GCCTTAGCACTTCATTACCTCGT 60.679 47.826 0.00 0.00 39.53 4.18
484 485 3.865745 CCTTAGCACTTCATTACCTCGTG 59.134 47.826 0.00 0.00 0.00 4.35
485 486 2.386661 AGCACTTCATTACCTCGTGG 57.613 50.000 0.99 0.99 39.83 4.94
486 487 1.066143 AGCACTTCATTACCTCGTGGG 60.066 52.381 8.63 2.00 41.89 4.61
487 488 1.369625 CACTTCATTACCTCGTGGGC 58.630 55.000 8.63 0.00 39.10 5.36
488 489 1.066143 CACTTCATTACCTCGTGGGCT 60.066 52.381 8.63 0.00 39.10 5.19
489 490 1.207329 ACTTCATTACCTCGTGGGCTC 59.793 52.381 8.63 0.00 39.10 4.70
490 491 0.539986 TTCATTACCTCGTGGGCTCC 59.460 55.000 8.63 0.00 39.10 4.70
491 492 1.146263 CATTACCTCGTGGGCTCCC 59.854 63.158 8.63 0.00 39.10 4.30
492 493 1.003051 ATTACCTCGTGGGCTCCCT 59.997 57.895 8.63 0.00 39.10 4.20
493 494 0.620700 ATTACCTCGTGGGCTCCCTT 60.621 55.000 8.63 0.00 39.10 3.95
494 495 1.550130 TTACCTCGTGGGCTCCCTTG 61.550 60.000 8.63 0.00 39.10 3.61
495 496 4.785453 CCTCGTGGGCTCCCTTGC 62.785 72.222 6.50 0.00 36.94 4.01
496 497 4.020617 CTCGTGGGCTCCCTTGCA 62.021 66.667 6.50 0.00 36.94 4.08
497 498 3.329889 TCGTGGGCTCCCTTGCAT 61.330 61.111 6.50 0.00 36.94 3.96
498 499 1.971505 CTCGTGGGCTCCCTTGCATA 61.972 60.000 6.50 0.00 36.94 3.14
499 500 1.819632 CGTGGGCTCCCTTGCATAC 60.820 63.158 6.50 0.00 36.94 2.39
500 501 1.453928 GTGGGCTCCCTTGCATACC 60.454 63.158 6.50 0.00 36.94 2.73
501 502 2.195956 GGGCTCCCTTGCATACCC 59.804 66.667 0.00 0.00 34.04 3.69
502 503 2.386935 GGGCTCCCTTGCATACCCT 61.387 63.158 0.00 0.00 34.34 4.34
503 504 1.615262 GGCTCCCTTGCATACCCTT 59.385 57.895 0.00 0.00 34.04 3.95
504 505 0.466372 GGCTCCCTTGCATACCCTTC 60.466 60.000 0.00 0.00 34.04 3.46
505 506 0.466372 GCTCCCTTGCATACCCTTCC 60.466 60.000 0.00 0.00 0.00 3.46
506 507 0.179045 CTCCCTTGCATACCCTTCCG 60.179 60.000 0.00 0.00 0.00 4.30
507 508 0.619255 TCCCTTGCATACCCTTCCGA 60.619 55.000 0.00 0.00 0.00 4.55
508 509 0.179045 CCCTTGCATACCCTTCCGAG 60.179 60.000 0.00 0.00 0.00 4.63
509 510 0.541863 CCTTGCATACCCTTCCGAGT 59.458 55.000 0.00 0.00 0.00 4.18
510 511 1.760613 CCTTGCATACCCTTCCGAGTA 59.239 52.381 0.00 0.00 0.00 2.59
511 512 2.368875 CCTTGCATACCCTTCCGAGTAT 59.631 50.000 0.00 0.00 0.00 2.12
512 513 3.576982 CCTTGCATACCCTTCCGAGTATA 59.423 47.826 0.00 0.00 0.00 1.47
513 514 4.557205 CTTGCATACCCTTCCGAGTATAC 58.443 47.826 0.00 0.00 0.00 1.47
514 515 2.895404 TGCATACCCTTCCGAGTATACC 59.105 50.000 0.00 0.00 0.00 2.73
515 516 3.163467 GCATACCCTTCCGAGTATACCT 58.837 50.000 0.00 0.00 0.00 3.08
516 517 3.056749 GCATACCCTTCCGAGTATACCTG 60.057 52.174 0.00 0.00 0.00 4.00
517 518 2.083628 ACCCTTCCGAGTATACCTGG 57.916 55.000 0.00 1.81 0.00 4.45
518 519 0.680061 CCCTTCCGAGTATACCTGGC 59.320 60.000 0.00 0.00 0.00 4.85
519 520 0.680061 CCTTCCGAGTATACCTGGCC 59.320 60.000 0.00 0.00 0.00 5.36
520 521 1.410004 CTTCCGAGTATACCTGGCCA 58.590 55.000 4.71 4.71 0.00 5.36
521 522 1.760613 CTTCCGAGTATACCTGGCCAA 59.239 52.381 7.01 0.00 0.00 4.52
522 523 1.868713 TCCGAGTATACCTGGCCAAA 58.131 50.000 7.01 0.00 0.00 3.28
523 524 1.483415 TCCGAGTATACCTGGCCAAAC 59.517 52.381 7.01 0.00 0.00 2.93
524 525 1.208535 CCGAGTATACCTGGCCAAACA 59.791 52.381 7.01 0.00 0.00 2.83
525 526 2.550978 CGAGTATACCTGGCCAAACAG 58.449 52.381 7.01 0.00 38.21 3.16
561 562 2.440247 GGCCCGGCTTGTGCTAAT 60.440 61.111 9.86 0.00 39.59 1.73
562 563 2.481471 GGCCCGGCTTGTGCTAATC 61.481 63.158 9.86 0.00 39.59 1.75
563 564 2.823829 GCCCGGCTTGTGCTAATCG 61.824 63.158 0.71 0.00 39.59 3.34
564 565 1.449601 CCCGGCTTGTGCTAATCGT 60.450 57.895 0.00 0.00 39.59 3.73
565 566 1.705337 CCCGGCTTGTGCTAATCGTG 61.705 60.000 0.00 0.00 39.59 4.35
566 567 1.060937 CGGCTTGTGCTAATCGTGC 59.939 57.895 0.00 0.00 39.59 5.34
567 568 1.429423 GGCTTGTGCTAATCGTGCC 59.571 57.895 0.00 0.00 39.59 5.01
568 569 1.026718 GGCTTGTGCTAATCGTGCCT 61.027 55.000 0.00 0.00 39.59 4.75
569 570 0.097674 GCTTGTGCTAATCGTGCCTG 59.902 55.000 0.00 0.00 36.03 4.85
570 571 0.729116 CTTGTGCTAATCGTGCCTGG 59.271 55.000 0.00 0.00 0.00 4.45
571 572 1.305219 TTGTGCTAATCGTGCCTGGC 61.305 55.000 12.87 12.87 0.00 4.85
572 573 2.124736 TGCTAATCGTGCCTGGCC 60.125 61.111 17.53 6.66 0.00 5.36
573 574 2.902343 GCTAATCGTGCCTGGCCC 60.902 66.667 17.53 2.94 0.00 5.80
574 575 2.588877 CTAATCGTGCCTGGCCCG 60.589 66.667 17.67 17.67 0.00 6.13
575 576 4.169696 TAATCGTGCCTGGCCCGG 62.170 66.667 22.84 9.24 0.00 5.73
598 599 2.748251 CCCGCCATGGCACGTTTA 60.748 61.111 34.93 0.00 42.06 2.01
599 600 2.336478 CCCGCCATGGCACGTTTAA 61.336 57.895 34.93 0.00 42.06 1.52
600 601 1.662438 CCCGCCATGGCACGTTTAAT 61.662 55.000 34.93 0.00 42.06 1.40
601 602 1.018148 CCGCCATGGCACGTTTAATA 58.982 50.000 34.93 0.00 42.06 0.98
602 603 1.002900 CCGCCATGGCACGTTTAATAG 60.003 52.381 34.93 15.02 42.06 1.73
603 604 1.596954 CGCCATGGCACGTTTAATAGC 60.597 52.381 34.93 4.60 42.06 2.97
607 608 2.019337 GGCACGTTTAATAGCCGGG 58.981 57.895 2.18 0.00 37.41 5.73
608 609 1.354155 GCACGTTTAATAGCCGGGC 59.646 57.895 12.11 12.11 44.35 6.13
609 610 2.019337 CACGTTTAATAGCCGGGCC 58.981 57.895 17.02 0.00 0.00 5.80
610 611 1.522130 ACGTTTAATAGCCGGGCCG 60.522 57.895 21.46 21.46 0.00 6.13
611 612 1.522130 CGTTTAATAGCCGGGCCGT 60.522 57.895 26.32 10.07 0.00 5.68
612 613 1.768112 CGTTTAATAGCCGGGCCGTG 61.768 60.000 26.32 17.25 0.00 4.94
613 614 1.820481 TTTAATAGCCGGGCCGTGC 60.820 57.895 26.32 25.86 0.00 5.34
641 642 4.093952 CACGGGCGCTGCTCTTTG 62.094 66.667 7.64 0.00 0.00 2.77
645 646 3.808656 GGCGCTGCTCTTTGGCTC 61.809 66.667 7.64 0.00 0.00 4.70
646 647 3.052082 GCGCTGCTCTTTGGCTCA 61.052 61.111 0.00 0.00 0.00 4.26
647 648 3.036783 GCGCTGCTCTTTGGCTCAG 62.037 63.158 0.00 0.00 0.00 3.35
648 649 2.396955 CGCTGCTCTTTGGCTCAGG 61.397 63.158 0.00 0.00 0.00 3.86
649 650 2.698763 GCTGCTCTTTGGCTCAGGC 61.699 63.158 0.00 0.00 37.82 4.85
650 651 1.303074 CTGCTCTTTGGCTCAGGCA 60.303 57.895 0.00 0.00 40.87 4.75
651 652 1.584380 CTGCTCTTTGGCTCAGGCAC 61.584 60.000 0.00 0.00 37.98 5.01
652 653 2.684843 GCTCTTTGGCTCAGGCACG 61.685 63.158 0.00 0.00 37.98 5.34
653 654 1.004560 CTCTTTGGCTCAGGCACGA 60.005 57.895 0.00 0.00 37.98 4.35
654 655 1.294659 CTCTTTGGCTCAGGCACGAC 61.295 60.000 0.00 0.00 37.98 4.34
655 656 2.281484 TTTGGCTCAGGCACGACC 60.281 61.111 0.00 0.00 37.98 4.79
668 669 2.601763 GGCACGACCTGATTAGTAAACG 59.398 50.000 0.00 0.00 34.51 3.60
669 670 2.601763 GCACGACCTGATTAGTAAACGG 59.398 50.000 0.00 0.00 0.00 4.44
670 671 3.184541 CACGACCTGATTAGTAAACGGG 58.815 50.000 14.79 14.79 36.28 5.28
671 672 2.199236 CGACCTGATTAGTAAACGGGC 58.801 52.381 15.99 9.25 33.80 6.13
672 673 2.558378 GACCTGATTAGTAAACGGGCC 58.442 52.381 15.99 3.54 33.80 5.80
673 674 1.134610 ACCTGATTAGTAAACGGGCCG 60.135 52.381 27.06 27.06 33.80 6.13
674 675 1.578583 CTGATTAGTAAACGGGCCGG 58.421 55.000 31.78 12.53 0.00 6.13
675 676 0.462403 TGATTAGTAAACGGGCCGGC 60.462 55.000 31.78 21.18 0.00 6.13
676 677 1.153107 ATTAGTAAACGGGCCGGCC 60.153 57.895 38.57 38.57 0.00 6.13
692 693 3.827634 CCCGATGGCCTGTTTAGC 58.172 61.111 3.32 0.00 0.00 3.09
693 694 1.077787 CCCGATGGCCTGTTTAGCA 60.078 57.895 3.32 0.00 0.00 3.49
694 695 1.376609 CCCGATGGCCTGTTTAGCAC 61.377 60.000 3.32 0.00 0.00 4.40
695 696 1.705337 CCGATGGCCTGTTTAGCACG 61.705 60.000 3.32 0.00 0.00 5.34
696 697 1.429423 GATGGCCTGTTTAGCACGC 59.571 57.895 3.32 0.00 0.00 5.34
697 698 1.002134 ATGGCCTGTTTAGCACGCT 60.002 52.632 3.32 0.00 31.27 5.07
698 699 1.308069 ATGGCCTGTTTAGCACGCTG 61.308 55.000 3.32 0.00 31.27 5.18
699 700 2.690778 GGCCTGTTTAGCACGCTGG 61.691 63.158 0.72 0.00 31.27 4.85
700 701 2.690778 GCCTGTTTAGCACGCTGGG 61.691 63.158 0.72 0.00 0.00 4.45
701 702 1.003839 CCTGTTTAGCACGCTGGGA 60.004 57.895 0.72 0.00 0.00 4.37
702 703 0.392998 CCTGTTTAGCACGCTGGGAT 60.393 55.000 0.72 0.00 0.00 3.85
703 704 0.729116 CTGTTTAGCACGCTGGGATG 59.271 55.000 0.72 0.00 0.00 3.51
704 705 1.305219 TGTTTAGCACGCTGGGATGC 61.305 55.000 0.72 5.06 42.39 3.91
705 706 1.002746 TTTAGCACGCTGGGATGCA 60.003 52.632 16.75 0.00 44.59 3.96
706 707 1.305219 TTTAGCACGCTGGGATGCAC 61.305 55.000 16.75 0.00 44.59 4.57
707 708 2.462125 TTAGCACGCTGGGATGCACA 62.462 55.000 16.75 6.06 44.59 4.57
708 709 2.256072 TAGCACGCTGGGATGCACAT 62.256 55.000 16.75 0.00 44.59 3.21
709 710 1.819208 GCACGCTGGGATGCACATA 60.819 57.895 12.03 0.00 41.65 2.29
710 711 1.168407 GCACGCTGGGATGCACATAT 61.168 55.000 12.03 0.00 41.65 1.78
711 712 1.311859 CACGCTGGGATGCACATATT 58.688 50.000 0.00 0.00 0.00 1.28
712 713 2.493035 CACGCTGGGATGCACATATTA 58.507 47.619 0.00 0.00 0.00 0.98
713 714 2.877786 CACGCTGGGATGCACATATTAA 59.122 45.455 0.00 0.00 0.00 1.40
714 715 3.314913 CACGCTGGGATGCACATATTAAA 59.685 43.478 0.00 0.00 0.00 1.52
715 716 3.315191 ACGCTGGGATGCACATATTAAAC 59.685 43.478 0.00 0.00 0.00 2.01
716 717 3.304659 CGCTGGGATGCACATATTAAACC 60.305 47.826 0.00 0.00 0.00 3.27
717 718 3.891366 GCTGGGATGCACATATTAAACCT 59.109 43.478 0.00 0.00 0.00 3.50
718 719 4.261741 GCTGGGATGCACATATTAAACCTG 60.262 45.833 0.00 0.00 0.00 4.00
719 720 4.865905 TGGGATGCACATATTAAACCTGT 58.134 39.130 0.00 0.00 0.00 4.00
720 721 5.268387 TGGGATGCACATATTAAACCTGTT 58.732 37.500 0.00 0.00 0.00 3.16
721 722 5.126869 TGGGATGCACATATTAAACCTGTTG 59.873 40.000 0.00 0.00 0.00 3.33
722 723 5.451798 GGGATGCACATATTAAACCTGTTGG 60.452 44.000 0.00 0.00 39.83 3.77
723 724 5.451798 GGATGCACATATTAAACCTGTTGGG 60.452 44.000 0.00 0.00 41.89 4.12
724 725 3.194542 TGCACATATTAAACCTGTTGGGC 59.805 43.478 0.00 0.00 39.10 5.36
725 726 3.447229 GCACATATTAAACCTGTTGGGCT 59.553 43.478 0.00 0.00 39.10 5.19
726 727 4.677779 GCACATATTAAACCTGTTGGGCTG 60.678 45.833 0.00 0.00 39.10 4.85
727 728 4.462483 CACATATTAAACCTGTTGGGCTGT 59.538 41.667 0.00 0.00 39.10 4.40
728 729 4.462483 ACATATTAAACCTGTTGGGCTGTG 59.538 41.667 0.00 0.00 39.10 3.66
729 730 2.445682 TTAAACCTGTTGGGCTGTGT 57.554 45.000 0.00 0.00 39.10 3.72
730 731 2.445682 TAAACCTGTTGGGCTGTGTT 57.554 45.000 0.00 0.00 39.10 3.32
731 732 1.567357 AAACCTGTTGGGCTGTGTTT 58.433 45.000 0.00 0.00 39.10 2.83
732 733 1.567357 AACCTGTTGGGCTGTGTTTT 58.433 45.000 0.00 0.00 39.10 2.43
733 734 2.445682 ACCTGTTGGGCTGTGTTTTA 57.554 45.000 0.00 0.00 39.10 1.52
734 735 2.306847 ACCTGTTGGGCTGTGTTTTAG 58.693 47.619 0.00 0.00 39.10 1.85
735 736 1.613437 CCTGTTGGGCTGTGTTTTAGG 59.387 52.381 0.00 0.00 0.00 2.69
736 737 1.000274 CTGTTGGGCTGTGTTTTAGGC 60.000 52.381 0.00 0.00 39.76 3.93
742 743 3.782889 GGCTGTGTTTTAGGCCTATTG 57.217 47.619 14.74 0.49 41.20 1.90
743 744 2.427095 GGCTGTGTTTTAGGCCTATTGG 59.573 50.000 14.74 1.56 41.20 3.16
744 745 2.427095 GCTGTGTTTTAGGCCTATTGGG 59.573 50.000 14.74 2.10 38.36 4.12
762 763 9.802039 CCTATTGGGCTATATTTTAGGTGTAAA 57.198 33.333 0.00 0.00 0.00 2.01
808 809 1.785768 AAAAATTAAACGGGCCGTGC 58.214 45.000 34.87 0.00 39.99 5.34
847 848 4.021925 GCTCCAGGCCCAAGACGT 62.022 66.667 0.00 0.00 34.27 4.34
848 849 2.046892 CTCCAGGCCCAAGACGTG 60.047 66.667 0.00 0.00 0.00 4.49
849 850 4.329545 TCCAGGCCCAAGACGTGC 62.330 66.667 0.00 0.00 0.00 5.34
874 875 2.812178 CGGTCACGGCCCGTTTAG 60.812 66.667 5.76 0.00 38.32 1.85
875 876 3.122971 GGTCACGGCCCGTTTAGC 61.123 66.667 5.76 3.57 38.32 3.09
885 886 3.784412 CGTTTAGCCCGTGCCGTG 61.784 66.667 0.00 0.00 38.69 4.94
886 887 4.097863 GTTTAGCCCGTGCCGTGC 62.098 66.667 0.00 0.00 38.69 5.34
968 969 0.319986 GCCAGCTATACTTCCGAGGC 60.320 60.000 0.00 0.00 0.00 4.70
970 971 1.620819 CCAGCTATACTTCCGAGGCAT 59.379 52.381 0.00 0.00 0.00 4.40
978 982 1.072331 ACTTCCGAGGCATCAAACAGT 59.928 47.619 0.00 0.00 0.00 3.55
980 984 3.055094 ACTTCCGAGGCATCAAACAGTAT 60.055 43.478 0.00 0.00 0.00 2.12
982 986 2.499693 TCCGAGGCATCAAACAGTATCA 59.500 45.455 0.00 0.00 0.00 2.15
1245 1255 2.106683 GGTGCTCGATGAAACCCCG 61.107 63.158 0.00 0.00 0.00 5.73
1606 1616 1.980772 GGCTGCCTGCAGAATGGTT 60.981 57.895 22.64 0.00 46.30 3.67
1635 1645 0.250901 AAGGACTGGCGCTGTTCAAT 60.251 50.000 7.64 0.00 0.00 2.57
1725 1735 0.759959 TCGGCAGTTTACACCAAGGA 59.240 50.000 0.00 0.00 0.00 3.36
1787 1797 2.632987 AACCCTTTCGTTACTGCAGT 57.367 45.000 25.12 25.12 0.00 4.40
1816 1826 3.990469 GGATATGTATGTCAAGTGCGGAG 59.010 47.826 0.00 0.00 0.00 4.63
1819 1829 1.204704 TGTATGTCAAGTGCGGAGAGG 59.795 52.381 0.00 0.00 0.00 3.69
1851 1861 0.598065 GGCGGTTGTTTGATGAGCTT 59.402 50.000 0.00 0.00 0.00 3.74
1950 1960 4.732285 TCTGTTCGCTGACAAGAAATTC 57.268 40.909 0.00 0.00 0.00 2.17
2100 2110 0.721154 TGATGAATGCGCTCGTTGAC 59.279 50.000 9.73 0.00 0.00 3.18
2265 2275 1.376037 GAGGGTGCAGGGTTCTTCG 60.376 63.158 0.00 0.00 0.00 3.79
2353 2364 8.205512 TCGGTAAATGTTTCCATACTTATGCTA 58.794 33.333 0.00 0.00 32.40 3.49
2360 2371 7.915508 TGTTTCCATACTTATGCTATCAAACG 58.084 34.615 0.00 0.00 32.40 3.60
2421 2432 1.675552 ACCTGTACAACAAGTGTGCC 58.324 50.000 0.00 0.00 41.81 5.01
2502 2513 2.551071 GGGTGCTATGATTGGAGGCTAC 60.551 54.545 0.00 0.00 0.00 3.58
2649 2660 7.931578 TTCTGTAGGAAAGAAGTGTTTTGAA 57.068 32.000 0.00 0.00 0.00 2.69
2748 2759 1.830486 ATCTGGAGGAGGCATTGGAT 58.170 50.000 0.00 0.00 0.00 3.41
2847 2858 3.680458 GGTTAGAGTTTGGAGAAGAAGCG 59.320 47.826 0.00 0.00 0.00 4.68
2867 2878 3.686726 GCGATCAATAGGATGATGGTTCC 59.313 47.826 0.00 0.00 40.08 3.62
2885 2896 1.812922 CTCATCCTGACACGCCAGC 60.813 63.158 0.00 0.00 32.97 4.85
2922 2933 8.262601 TGATGTCCAACTTGTATACCTCATAT 57.737 34.615 0.00 0.00 0.00 1.78
2928 2939 6.270000 CCAACTTGTATACCTCATATGGGAGA 59.730 42.308 3.44 0.00 37.05 3.71
2988 2999 4.325084 AAGAGGACTAGTCAAGCTACCT 57.675 45.455 23.91 10.80 31.89 3.08
3025 3036 6.723515 TGTGGGACTTGAAAATGGATGAATTA 59.276 34.615 0.00 0.00 0.00 1.40
3160 3185 0.543277 TGGCAGCGAGATCCAGAATT 59.457 50.000 0.00 0.00 0.00 2.17
3168 3193 3.007398 GCGAGATCCAGAATTAGGATGGT 59.993 47.826 14.80 4.26 45.65 3.55
3200 3225 1.280710 TGTGGAGTGTGTTGTCTGGTT 59.719 47.619 0.00 0.00 0.00 3.67
3241 3266 5.885449 ATTTTGGAATGAACCCTGAAACA 57.115 34.783 0.00 0.00 0.00 2.83
3242 3267 4.935352 TTTGGAATGAACCCTGAAACAG 57.065 40.909 0.00 0.00 0.00 3.16
3325 3350 5.801947 GCAAGTGTTGGCAGAACATTATAAG 59.198 40.000 4.06 0.00 32.23 1.73
3326 3351 6.324819 CAAGTGTTGGCAGAACATTATAAGG 58.675 40.000 4.06 0.00 32.23 2.69
3327 3352 4.399303 AGTGTTGGCAGAACATTATAAGGC 59.601 41.667 4.06 0.00 32.23 4.35
3375 3419 8.557864 GTGACATGAGATATTCAGATTTTCAGG 58.442 37.037 0.00 0.00 39.68 3.86
3428 3479 3.286329 TGATGTTGATATGCTGCTGGT 57.714 42.857 0.00 0.00 0.00 4.00
3491 3550 1.070445 CTTGAGGCTAGGCTCATCTGG 59.930 57.143 39.88 27.36 0.00 3.86
3511 3570 2.626743 GGGCCCATGATTCATGAAGAAG 59.373 50.000 24.93 9.86 43.81 2.85
3549 3608 2.620242 GCATGGTAAAATGCCTGGTTG 58.380 47.619 0.00 0.00 45.93 3.77
3551 3610 3.848726 CATGGTAAAATGCCTGGTTGTC 58.151 45.455 0.00 0.00 0.00 3.18
3563 3622 4.469586 TGCCTGGTTGTCTATACTGAATGA 59.530 41.667 0.00 0.00 0.00 2.57
3615 3681 2.312140 ACTGAGGAGCTAGGTAGGAACA 59.688 50.000 0.00 0.00 0.00 3.18
3618 3684 4.362677 TGAGGAGCTAGGTAGGAACAAAT 58.637 43.478 0.00 0.00 0.00 2.32
3620 3687 4.362677 AGGAGCTAGGTAGGAACAAATGA 58.637 43.478 0.00 0.00 0.00 2.57
3624 3691 6.128138 AGCTAGGTAGGAACAAATGAACTT 57.872 37.500 0.00 0.00 0.00 2.66
3673 3740 8.558973 AATTATATCTTGTCTCATAAGCTGGC 57.441 34.615 0.00 0.00 0.00 4.85
3683 3750 3.466836 TCATAAGCTGGCCAATAGTTCG 58.533 45.455 7.01 0.00 0.00 3.95
3686 3753 0.392998 AGCTGGCCAATAGTTCGTGG 60.393 55.000 7.01 0.00 38.00 4.94
3761 3828 6.961359 TCGTATTACTTTCAAGACATGGTG 57.039 37.500 0.00 0.00 0.00 4.17
3780 3848 4.161565 TGGTGATTAAGCCTACTGGTACTG 59.838 45.833 0.00 0.00 35.27 2.74
3786 3855 6.555463 TTAAGCCTACTGGTACTGCTATTT 57.445 37.500 0.00 0.00 35.27 1.40
3805 3874 9.284594 TGCTATTTAACACGATTTGAATTTAGC 57.715 29.630 0.00 0.00 0.00 3.09
3809 3878 9.651913 ATTTAACACGATTTGAATTTAGCCAAT 57.348 25.926 0.00 0.00 0.00 3.16
3910 3979 2.016318 CACACACTTTGACTGGCTGAA 58.984 47.619 0.00 0.00 0.00 3.02
3936 4005 1.746615 CTGCCATGACCAAGACGGG 60.747 63.158 0.00 0.00 40.22 5.28
3999 4068 5.005740 ACTGCAGTTCATTCAGCATCTTAA 58.994 37.500 15.25 0.00 36.28 1.85
4006 4075 7.061905 CAGTTCATTCAGCATCTTAAGCAAAAG 59.938 37.037 0.00 0.00 0.00 2.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 2.286833 CGTGCCTCTCAGAAACGAAAAA 59.713 45.455 0.00 0.00 36.38 1.94
9 10 1.864711 CGTGCCTCTCAGAAACGAAAA 59.135 47.619 0.00 0.00 36.38 2.29
10 11 1.497991 CGTGCCTCTCAGAAACGAAA 58.502 50.000 0.00 0.00 36.38 3.46
11 12 0.319555 CCGTGCCTCTCAGAAACGAA 60.320 55.000 5.92 0.00 36.38 3.85
12 13 1.289066 CCGTGCCTCTCAGAAACGA 59.711 57.895 5.92 0.00 36.38 3.85
13 14 2.383527 GCCGTGCCTCTCAGAAACG 61.384 63.158 0.00 0.00 0.00 3.60
14 15 2.035442 GGCCGTGCCTCTCAGAAAC 61.035 63.158 7.58 0.00 46.69 2.78
15 16 2.347490 GGCCGTGCCTCTCAGAAA 59.653 61.111 7.58 0.00 46.69 2.52
29 30 3.909258 TTTCGCGAGAGTCACGGCC 62.909 63.158 9.59 0.00 43.69 6.13
30 31 2.430244 TTTCGCGAGAGTCACGGC 60.430 61.111 9.59 3.61 43.69 5.68
31 32 2.437343 GCTTTCGCGAGAGTCACGG 61.437 63.158 25.34 2.90 43.69 4.94
32 33 1.729484 TGCTTTCGCGAGAGTCACG 60.729 57.895 25.34 5.53 43.69 4.35
33 34 0.939577 TGTGCTTTCGCGAGAGTCAC 60.940 55.000 29.56 29.56 43.69 3.67
34 35 0.249280 TTGTGCTTTCGCGAGAGTCA 60.249 50.000 25.34 20.22 43.69 3.41
35 36 0.161870 GTTGTGCTTTCGCGAGAGTC 59.838 55.000 25.34 18.16 43.69 3.36
36 37 1.222115 GGTTGTGCTTTCGCGAGAGT 61.222 55.000 25.34 0.00 43.69 3.24
37 38 1.221466 TGGTTGTGCTTTCGCGAGAG 61.221 55.000 21.42 21.42 43.69 3.20
38 39 0.602638 ATGGTTGTGCTTTCGCGAGA 60.603 50.000 9.59 3.35 39.65 4.04
39 40 0.453282 CATGGTTGTGCTTTCGCGAG 60.453 55.000 9.59 0.00 39.65 5.03
40 41 1.573932 CATGGTTGTGCTTTCGCGA 59.426 52.632 3.71 3.71 39.65 5.87
41 42 2.082366 GCATGGTTGTGCTTTCGCG 61.082 57.895 0.00 0.00 41.82 5.87
42 43 1.734117 GGCATGGTTGTGCTTTCGC 60.734 57.895 0.00 0.00 44.45 4.70
43 44 0.109597 GAGGCATGGTTGTGCTTTCG 60.110 55.000 0.00 0.00 44.45 3.46
44 45 1.200948 GAGAGGCATGGTTGTGCTTTC 59.799 52.381 0.00 0.00 44.45 2.62
45 46 1.251251 GAGAGGCATGGTTGTGCTTT 58.749 50.000 0.00 0.00 44.45 3.51
46 47 0.957395 CGAGAGGCATGGTTGTGCTT 60.957 55.000 0.00 0.00 44.45 3.91
47 48 1.376424 CGAGAGGCATGGTTGTGCT 60.376 57.895 0.00 0.00 44.45 4.40
48 49 3.044059 GCGAGAGGCATGGTTGTGC 62.044 63.158 0.00 0.00 44.31 4.57
49 50 2.743752 CGCGAGAGGCATGGTTGTG 61.744 63.158 0.00 0.00 43.84 3.33
50 51 2.434884 CGCGAGAGGCATGGTTGT 60.435 61.111 0.00 0.00 43.84 3.32
51 52 3.197790 CCGCGAGAGGCATGGTTG 61.198 66.667 8.23 0.00 43.84 3.77
52 53 2.859273 CTTCCGCGAGAGGCATGGTT 62.859 60.000 8.23 0.00 43.84 3.67
53 54 3.376935 CTTCCGCGAGAGGCATGGT 62.377 63.158 8.23 0.00 43.84 3.55
54 55 2.587194 CTTCCGCGAGAGGCATGG 60.587 66.667 8.23 0.00 43.84 3.66
55 56 3.267860 GCTTCCGCGAGAGGCATG 61.268 66.667 20.89 0.00 46.54 4.06
59 60 1.497722 GTTTTGCTTCCGCGAGAGG 59.502 57.895 8.23 4.88 39.65 3.69
60 61 1.497722 GGTTTTGCTTCCGCGAGAG 59.502 57.895 8.23 5.93 39.65 3.20
61 62 2.314647 CGGTTTTGCTTCCGCGAGA 61.315 57.895 8.23 0.00 40.28 4.04
62 63 2.173382 CGGTTTTGCTTCCGCGAG 59.827 61.111 8.23 0.00 40.28 5.03
67 68 1.531578 GAGAGTCACGGTTTTGCTTCC 59.468 52.381 0.00 0.00 0.00 3.46
68 69 1.192534 CGAGAGTCACGGTTTTGCTTC 59.807 52.381 1.62 0.00 0.00 3.86
69 70 1.217882 CGAGAGTCACGGTTTTGCTT 58.782 50.000 1.62 0.00 0.00 3.91
70 71 1.222115 GCGAGAGTCACGGTTTTGCT 61.222 55.000 11.95 0.00 0.00 3.91
71 72 1.204312 GCGAGAGTCACGGTTTTGC 59.796 57.895 11.95 0.00 0.00 3.68
72 73 0.937699 TCGCGAGAGTCACGGTTTTG 60.938 55.000 3.71 0.00 34.84 2.44
73 74 0.249155 TTCGCGAGAGTCACGGTTTT 60.249 50.000 9.59 0.00 43.69 2.43
74 75 0.249155 TTTCGCGAGAGTCACGGTTT 60.249 50.000 9.59 0.00 43.69 3.27
75 76 0.663568 CTTTCGCGAGAGTCACGGTT 60.664 55.000 17.92 0.00 43.69 4.44
76 77 1.081376 CTTTCGCGAGAGTCACGGT 60.081 57.895 17.92 0.00 43.69 4.83
77 78 1.801913 CCTTTCGCGAGAGTCACGG 60.802 63.158 23.28 6.69 43.69 4.94
78 79 0.386858 TTCCTTTCGCGAGAGTCACG 60.387 55.000 23.28 9.67 43.69 4.35
79 80 1.779569 TTTCCTTTCGCGAGAGTCAC 58.220 50.000 23.28 0.00 43.69 3.67
80 81 2.519377 TTTTCCTTTCGCGAGAGTCA 57.481 45.000 23.28 8.47 43.69 3.41
119 120 3.242608 CGTGCCTCTCGAAAACAGAAAAA 60.243 43.478 0.00 0.00 0.00 1.94
120 121 2.286833 CGTGCCTCTCGAAAACAGAAAA 59.713 45.455 0.00 0.00 0.00 2.29
121 122 1.864711 CGTGCCTCTCGAAAACAGAAA 59.135 47.619 0.00 0.00 0.00 2.52
122 123 1.497991 CGTGCCTCTCGAAAACAGAA 58.502 50.000 0.00 0.00 0.00 3.02
123 124 0.319555 CCGTGCCTCTCGAAAACAGA 60.320 55.000 0.00 0.00 0.00 3.41
124 125 1.901650 GCCGTGCCTCTCGAAAACAG 61.902 60.000 0.00 0.00 0.00 3.16
125 126 1.959226 GCCGTGCCTCTCGAAAACA 60.959 57.895 0.00 0.00 0.00 2.83
126 127 2.677979 GGCCGTGCCTCTCGAAAAC 61.678 63.158 7.58 0.00 46.69 2.43
127 128 2.358247 GGCCGTGCCTCTCGAAAA 60.358 61.111 7.58 0.00 46.69 2.29
141 142 3.479269 CTTTCGCGAGTCACGGCC 61.479 66.667 9.59 0.00 42.83 6.13
142 143 4.135493 GCTTTCGCGAGTCACGGC 62.135 66.667 9.59 5.17 42.83 5.68
143 144 2.733218 TGCTTTCGCGAGTCACGG 60.733 61.111 9.59 0.00 42.83 4.94
144 145 1.817217 TTGTGCTTTCGCGAGTCACG 61.817 55.000 22.86 5.87 45.66 4.35
145 146 0.383124 GTTGTGCTTTCGCGAGTCAC 60.383 55.000 22.19 22.19 39.65 3.67
146 147 1.495584 GGTTGTGCTTTCGCGAGTCA 61.496 55.000 9.59 5.89 39.65 3.41
147 148 1.204312 GGTTGTGCTTTCGCGAGTC 59.796 57.895 9.59 2.99 39.65 3.36
148 149 2.594962 CGGTTGTGCTTTCGCGAGT 61.595 57.895 9.59 0.00 39.65 4.18
149 150 2.170985 CGGTTGTGCTTTCGCGAG 59.829 61.111 9.59 0.00 39.65 5.03
150 151 2.586635 ACGGTTGTGCTTTCGCGA 60.587 55.556 3.71 3.71 39.65 5.87
151 152 2.425124 CACGGTTGTGCTTTCGCG 60.425 61.111 0.00 0.00 39.67 5.87
167 168 1.072331 GTTTCCCTTCAGTGAGAGGCA 59.928 52.381 13.11 0.00 0.00 4.75
168 169 1.611936 GGTTTCCCTTCAGTGAGAGGC 60.612 57.143 13.11 3.45 0.00 4.70
169 170 1.699634 TGGTTTCCCTTCAGTGAGAGG 59.300 52.381 12.08 12.08 0.00 3.69
170 171 3.008375 TCATGGTTTCCCTTCAGTGAGAG 59.992 47.826 0.00 0.00 0.00 3.20
171 172 2.978978 TCATGGTTTCCCTTCAGTGAGA 59.021 45.455 0.00 0.00 0.00 3.27
172 173 3.077359 GTCATGGTTTCCCTTCAGTGAG 58.923 50.000 0.00 0.00 0.00 3.51
173 174 2.711009 AGTCATGGTTTCCCTTCAGTGA 59.289 45.455 0.00 0.00 0.00 3.41
174 175 3.077359 GAGTCATGGTTTCCCTTCAGTG 58.923 50.000 0.00 0.00 0.00 3.66
175 176 2.982488 AGAGTCATGGTTTCCCTTCAGT 59.018 45.455 0.00 0.00 0.00 3.41
176 177 3.604582 GAGAGTCATGGTTTCCCTTCAG 58.395 50.000 0.00 0.00 0.00 3.02
177 178 2.028112 CGAGAGTCATGGTTTCCCTTCA 60.028 50.000 0.00 0.00 0.00 3.02
178 179 2.622436 CGAGAGTCATGGTTTCCCTTC 58.378 52.381 0.00 0.00 0.00 3.46
179 180 1.339151 GCGAGAGTCATGGTTTCCCTT 60.339 52.381 0.00 0.00 0.00 3.95
180 181 0.250513 GCGAGAGTCATGGTTTCCCT 59.749 55.000 0.00 0.00 0.00 4.20
181 182 1.084370 CGCGAGAGTCATGGTTTCCC 61.084 60.000 0.00 0.00 0.00 3.97
182 183 0.108804 TCGCGAGAGTCATGGTTTCC 60.109 55.000 3.71 0.00 34.84 3.13
183 184 1.710013 TTCGCGAGAGTCATGGTTTC 58.290 50.000 9.59 0.00 43.69 2.78
184 185 2.069273 CTTTCGCGAGAGTCATGGTTT 58.931 47.619 17.92 0.00 43.69 3.27
185 186 1.673033 CCTTTCGCGAGAGTCATGGTT 60.673 52.381 23.28 0.00 43.69 3.67
186 187 0.108615 CCTTTCGCGAGAGTCATGGT 60.109 55.000 23.28 0.00 43.69 3.55
187 188 0.173481 TCCTTTCGCGAGAGTCATGG 59.827 55.000 23.28 13.43 43.69 3.66
188 189 1.996292 TTCCTTTCGCGAGAGTCATG 58.004 50.000 23.28 9.67 43.69 3.07
189 190 2.743636 TTTCCTTTCGCGAGAGTCAT 57.256 45.000 23.28 0.00 43.69 3.06
190 191 2.519377 TTTTCCTTTCGCGAGAGTCA 57.481 45.000 23.28 8.47 43.69 3.41
253 254 4.102054 TCTCACCGGTCTTCCTTAGTTTTT 59.898 41.667 2.59 0.00 0.00 1.94
254 255 3.644738 TCTCACCGGTCTTCCTTAGTTTT 59.355 43.478 2.59 0.00 0.00 2.43
255 256 3.236896 TCTCACCGGTCTTCCTTAGTTT 58.763 45.455 2.59 0.00 0.00 2.66
256 257 2.885616 TCTCACCGGTCTTCCTTAGTT 58.114 47.619 2.59 0.00 0.00 2.24
257 258 2.599408 TCTCACCGGTCTTCCTTAGT 57.401 50.000 2.59 0.00 0.00 2.24
258 259 3.586892 GTTTCTCACCGGTCTTCCTTAG 58.413 50.000 2.59 0.00 0.00 2.18
259 260 2.301009 GGTTTCTCACCGGTCTTCCTTA 59.699 50.000 2.59 0.00 35.12 2.69
260 261 1.071857 GGTTTCTCACCGGTCTTCCTT 59.928 52.381 2.59 0.00 35.12 3.36
261 262 0.685660 GGTTTCTCACCGGTCTTCCT 59.314 55.000 2.59 0.00 35.12 3.36
262 263 3.228499 GGTTTCTCACCGGTCTTCC 57.772 57.895 2.59 0.00 35.12 3.46
271 272 3.661758 TTCGACGTTTTGGTTTCTCAC 57.338 42.857 0.00 0.00 0.00 3.51
272 273 4.681835 TTTTCGACGTTTTGGTTTCTCA 57.318 36.364 0.00 0.00 0.00 3.27
291 292 2.568062 ACGGTTTTGTTCCTGGGTTTTT 59.432 40.909 0.00 0.00 0.00 1.94
292 293 2.181125 ACGGTTTTGTTCCTGGGTTTT 58.819 42.857 0.00 0.00 0.00 2.43
293 294 1.855295 ACGGTTTTGTTCCTGGGTTT 58.145 45.000 0.00 0.00 0.00 3.27
294 295 1.855295 AACGGTTTTGTTCCTGGGTT 58.145 45.000 0.00 0.00 0.00 4.11
295 296 1.855295 AAACGGTTTTGTTCCTGGGT 58.145 45.000 0.00 0.00 0.00 4.51
296 297 4.388378 TTTAAACGGTTTTGTTCCTGGG 57.612 40.909 11.87 0.00 0.00 4.45
297 298 4.747605 CCATTTAAACGGTTTTGTTCCTGG 59.252 41.667 11.87 7.07 0.00 4.45
298 299 4.210328 GCCATTTAAACGGTTTTGTTCCTG 59.790 41.667 11.87 2.26 0.00 3.86
299 300 4.373527 GCCATTTAAACGGTTTTGTTCCT 58.626 39.130 11.87 0.00 0.00 3.36
300 301 3.495377 GGCCATTTAAACGGTTTTGTTCC 59.505 43.478 11.87 4.46 0.00 3.62
301 302 3.182772 CGGCCATTTAAACGGTTTTGTTC 59.817 43.478 11.87 0.00 0.00 3.18
302 303 3.124560 CGGCCATTTAAACGGTTTTGTT 58.875 40.909 11.87 0.00 0.00 2.83
303 304 2.361438 TCGGCCATTTAAACGGTTTTGT 59.639 40.909 11.87 0.00 0.00 2.83
304 305 3.014604 TCGGCCATTTAAACGGTTTTG 57.985 42.857 11.87 4.22 0.00 2.44
305 306 3.729862 TTCGGCCATTTAAACGGTTTT 57.270 38.095 11.87 0.00 0.00 2.43
306 307 3.729862 TTTCGGCCATTTAAACGGTTT 57.270 38.095 11.33 11.33 0.00 3.27
307 308 3.382855 GTTTTCGGCCATTTAAACGGTT 58.617 40.909 2.24 0.00 0.00 4.44
308 309 2.605097 CGTTTTCGGCCATTTAAACGGT 60.605 45.455 23.02 0.00 45.26 4.83
309 310 1.980156 CGTTTTCGGCCATTTAAACGG 59.020 47.619 23.02 0.00 45.26 4.44
311 312 1.384076 CGCGTTTTCGGCCATTTAAAC 59.616 47.619 2.24 6.26 44.29 2.01
312 313 1.001597 ACGCGTTTTCGGCCATTTAAA 60.002 42.857 5.58 0.00 44.29 1.52
313 314 0.592148 ACGCGTTTTCGGCCATTTAA 59.408 45.000 5.58 0.00 44.29 1.52
314 315 0.110147 CACGCGTTTTCGGCCATTTA 60.110 50.000 10.22 0.00 44.29 1.40
315 316 1.371145 CACGCGTTTTCGGCCATTT 60.371 52.632 10.22 0.00 44.29 2.32
316 317 2.254051 CACGCGTTTTCGGCCATT 59.746 55.556 10.22 0.00 44.29 3.16
317 318 4.398598 GCACGCGTTTTCGGCCAT 62.399 61.111 10.22 0.00 44.29 4.40
320 321 4.653252 TTCGCACGCGTTTTCGGC 62.653 61.111 10.22 9.05 44.29 5.54
321 322 1.194896 TTTTTCGCACGCGTTTTCGG 61.195 50.000 10.22 0.00 44.29 4.30
323 324 1.185189 ACTTTTTCGCACGCGTTTTC 58.815 45.000 10.22 0.04 40.74 2.29
324 325 2.455295 TACTTTTTCGCACGCGTTTT 57.545 40.000 10.22 0.00 40.74 2.43
325 326 2.455295 TTACTTTTTCGCACGCGTTT 57.545 40.000 10.22 0.00 40.74 3.60
326 327 2.455295 TTTACTTTTTCGCACGCGTT 57.545 40.000 10.22 0.00 40.74 4.84
327 328 2.455295 TTTTACTTTTTCGCACGCGT 57.545 40.000 5.58 5.58 40.74 6.01
345 346 5.810074 CGTTTCCTCCAGATTTTGTGTTTTT 59.190 36.000 0.00 0.00 0.00 1.94
346 347 5.348164 CGTTTCCTCCAGATTTTGTGTTTT 58.652 37.500 0.00 0.00 0.00 2.43
347 348 4.736464 GCGTTTCCTCCAGATTTTGTGTTT 60.736 41.667 0.00 0.00 0.00 2.83
348 349 3.243401 GCGTTTCCTCCAGATTTTGTGTT 60.243 43.478 0.00 0.00 0.00 3.32
349 350 2.293399 GCGTTTCCTCCAGATTTTGTGT 59.707 45.455 0.00 0.00 0.00 3.72
350 351 2.351738 GGCGTTTCCTCCAGATTTTGTG 60.352 50.000 0.00 0.00 0.00 3.33
351 352 1.886542 GGCGTTTCCTCCAGATTTTGT 59.113 47.619 0.00 0.00 0.00 2.83
352 353 1.202348 GGGCGTTTCCTCCAGATTTTG 59.798 52.381 0.00 0.00 34.39 2.44
353 354 1.203001 TGGGCGTTTCCTCCAGATTTT 60.203 47.619 0.00 0.00 34.39 1.82
354 355 0.404040 TGGGCGTTTCCTCCAGATTT 59.596 50.000 0.00 0.00 34.39 2.17
355 356 0.404040 TTGGGCGTTTCCTCCAGATT 59.596 50.000 0.00 0.00 34.39 2.40
356 357 0.404040 TTTGGGCGTTTCCTCCAGAT 59.596 50.000 0.00 0.00 34.39 2.90
357 358 0.183971 TTTTGGGCGTTTCCTCCAGA 59.816 50.000 0.00 0.00 34.39 3.86
358 359 0.313987 GTTTTGGGCGTTTCCTCCAG 59.686 55.000 0.00 0.00 34.39 3.86
359 360 1.448922 CGTTTTGGGCGTTTCCTCCA 61.449 55.000 0.00 0.00 34.39 3.86
360 361 1.284715 CGTTTTGGGCGTTTCCTCC 59.715 57.895 0.00 0.00 34.39 4.30
361 362 1.371267 GCGTTTTGGGCGTTTCCTC 60.371 57.895 0.00 0.00 34.39 3.71
362 363 2.725641 GCGTTTTGGGCGTTTCCT 59.274 55.556 0.00 0.00 34.39 3.36
378 379 2.126888 CCATTTGCCACGTGTCGC 60.127 61.111 15.65 12.30 0.00 5.19
379 380 1.295357 TAGCCATTTGCCACGTGTCG 61.295 55.000 15.65 0.51 42.71 4.35
380 381 0.878416 TTAGCCATTTGCCACGTGTC 59.122 50.000 15.65 0.98 42.71 3.67
381 382 0.881118 CTTAGCCATTTGCCACGTGT 59.119 50.000 15.65 0.00 42.71 4.49
382 383 1.131126 CTCTTAGCCATTTGCCACGTG 59.869 52.381 9.08 9.08 42.71 4.49
383 384 1.453155 CTCTTAGCCATTTGCCACGT 58.547 50.000 0.00 0.00 42.71 4.49
384 385 0.099436 GCTCTTAGCCATTTGCCACG 59.901 55.000 0.00 0.00 42.71 4.94
385 386 0.099436 CGCTCTTAGCCATTTGCCAC 59.901 55.000 0.00 0.00 42.71 5.01
386 387 1.656818 GCGCTCTTAGCCATTTGCCA 61.657 55.000 0.00 0.00 42.71 4.92
387 388 1.064783 GCGCTCTTAGCCATTTGCC 59.935 57.895 0.00 0.00 42.71 4.52
388 389 0.524180 GTGCGCTCTTAGCCATTTGC 60.524 55.000 9.73 0.00 38.18 3.68
389 390 0.099436 GGTGCGCTCTTAGCCATTTG 59.901 55.000 9.73 0.00 38.18 2.32
390 391 0.322456 TGGTGCGCTCTTAGCCATTT 60.322 50.000 9.73 0.00 38.18 2.32
391 392 0.322456 TTGGTGCGCTCTTAGCCATT 60.322 50.000 9.73 0.00 38.18 3.16
392 393 0.322456 TTTGGTGCGCTCTTAGCCAT 60.322 50.000 9.73 0.00 38.18 4.40
393 394 0.322456 ATTTGGTGCGCTCTTAGCCA 60.322 50.000 9.73 4.65 38.18 4.75
394 395 0.099436 CATTTGGTGCGCTCTTAGCC 59.901 55.000 9.73 1.86 38.18 3.93
395 396 1.086696 TCATTTGGTGCGCTCTTAGC 58.913 50.000 9.73 0.00 38.02 3.09
396 397 1.061131 CGTCATTTGGTGCGCTCTTAG 59.939 52.381 9.73 0.00 0.00 2.18
397 398 1.075542 CGTCATTTGGTGCGCTCTTA 58.924 50.000 9.73 0.00 0.00 2.10
398 399 1.868997 CGTCATTTGGTGCGCTCTT 59.131 52.632 9.73 0.00 0.00 2.85
399 400 2.680913 GCGTCATTTGGTGCGCTCT 61.681 57.895 9.73 0.00 44.35 4.09
400 401 2.202349 GCGTCATTTGGTGCGCTC 60.202 61.111 9.73 4.47 44.35 5.03
402 403 0.098728 ATTAGCGTCATTTGGTGCGC 59.901 50.000 0.00 0.00 46.43 6.09
403 404 2.176369 CAATTAGCGTCATTTGGTGCG 58.824 47.619 0.00 0.00 0.00 5.34
404 405 3.216147 ACAATTAGCGTCATTTGGTGC 57.784 42.857 0.00 0.00 0.00 5.01
405 406 3.364621 GCAACAATTAGCGTCATTTGGTG 59.635 43.478 0.00 0.00 39.27 4.17
406 407 3.574614 GCAACAATTAGCGTCATTTGGT 58.425 40.909 0.00 0.00 0.00 3.67
416 417 0.378610 GGAGCCTCGCAACAATTAGC 59.621 55.000 0.00 0.00 0.00 3.09
417 418 1.017387 GGGAGCCTCGCAACAATTAG 58.983 55.000 3.57 0.00 0.00 1.73
418 419 0.742990 CGGGAGCCTCGCAACAATTA 60.743 55.000 9.61 0.00 0.00 1.40
419 420 2.040544 CGGGAGCCTCGCAACAATT 61.041 57.895 9.61 0.00 0.00 2.32
420 421 2.436646 CGGGAGCCTCGCAACAAT 60.437 61.111 9.61 0.00 0.00 2.71
421 422 3.171828 TTCGGGAGCCTCGCAACAA 62.172 57.895 9.61 0.00 0.00 2.83
422 423 3.589654 CTTCGGGAGCCTCGCAACA 62.590 63.158 9.61 0.00 0.00 3.33
423 424 2.815647 CTTCGGGAGCCTCGCAAC 60.816 66.667 9.61 0.00 0.00 4.17
424 425 4.082523 CCTTCGGGAGCCTCGCAA 62.083 66.667 9.61 2.18 37.25 4.85
434 435 2.552585 TTAACGAGCGCTCCTTCGGG 62.553 60.000 30.66 17.99 0.00 5.14
435 436 1.153901 TTAACGAGCGCTCCTTCGG 60.154 57.895 30.66 18.71 0.00 4.30
436 437 0.456312 AGTTAACGAGCGCTCCTTCG 60.456 55.000 30.66 22.24 0.00 3.79
437 438 2.159407 ACTAGTTAACGAGCGCTCCTTC 60.159 50.000 30.66 14.44 0.00 3.46
438 439 1.817447 ACTAGTTAACGAGCGCTCCTT 59.183 47.619 30.66 26.03 0.00 3.36
439 440 1.132643 CACTAGTTAACGAGCGCTCCT 59.867 52.381 30.66 22.52 0.00 3.69
440 441 1.546834 CACTAGTTAACGAGCGCTCC 58.453 55.000 30.66 16.60 0.00 4.70
441 442 1.546834 CCACTAGTTAACGAGCGCTC 58.453 55.000 27.64 27.64 0.00 5.03
442 443 0.172803 CCCACTAGTTAACGAGCGCT 59.827 55.000 11.27 11.27 0.00 5.92
443 444 1.419107 GCCCACTAGTTAACGAGCGC 61.419 60.000 14.82 0.00 0.00 5.92
444 445 0.804933 GGCCCACTAGTTAACGAGCG 60.805 60.000 14.82 6.24 0.00 5.03
445 446 0.535797 AGGCCCACTAGTTAACGAGC 59.464 55.000 14.82 2.79 0.00 5.03
446 447 3.737355 GCTAAGGCCCACTAGTTAACGAG 60.737 52.174 13.50 13.50 0.00 4.18
447 448 2.167075 GCTAAGGCCCACTAGTTAACGA 59.833 50.000 0.00 0.00 0.00 3.85
448 449 2.093869 TGCTAAGGCCCACTAGTTAACG 60.094 50.000 0.00 0.00 37.74 3.18
449 450 3.055312 AGTGCTAAGGCCCACTAGTTAAC 60.055 47.826 10.31 0.00 40.30 2.01
450 451 3.178865 AGTGCTAAGGCCCACTAGTTAA 58.821 45.455 10.31 0.00 40.30 2.01
451 452 2.829023 AGTGCTAAGGCCCACTAGTTA 58.171 47.619 10.31 0.00 40.30 2.24
452 453 1.657804 AGTGCTAAGGCCCACTAGTT 58.342 50.000 10.31 0.00 40.30 2.24
453 454 1.555533 GAAGTGCTAAGGCCCACTAGT 59.444 52.381 12.13 0.00 41.16 2.57
454 455 1.555075 TGAAGTGCTAAGGCCCACTAG 59.445 52.381 12.13 6.32 41.16 2.57
455 456 1.651737 TGAAGTGCTAAGGCCCACTA 58.348 50.000 12.13 0.00 41.16 2.74
456 457 0.995024 ATGAAGTGCTAAGGCCCACT 59.005 50.000 6.56 6.56 43.69 4.00
457 458 1.839424 AATGAAGTGCTAAGGCCCAC 58.161 50.000 0.00 0.00 37.74 4.61
458 459 2.356741 GGTAATGAAGTGCTAAGGCCCA 60.357 50.000 0.00 0.00 37.74 5.36
459 460 2.092375 AGGTAATGAAGTGCTAAGGCCC 60.092 50.000 0.00 0.00 37.74 5.80
460 461 3.206964 GAGGTAATGAAGTGCTAAGGCC 58.793 50.000 0.00 0.00 37.74 5.19
461 462 2.866762 CGAGGTAATGAAGTGCTAAGGC 59.133 50.000 0.00 0.00 39.26 4.35
462 463 3.865745 CACGAGGTAATGAAGTGCTAAGG 59.134 47.826 0.00 0.00 0.00 2.69
463 464 3.865745 CCACGAGGTAATGAAGTGCTAAG 59.134 47.826 0.00 0.00 0.00 2.18
464 465 3.369052 CCCACGAGGTAATGAAGTGCTAA 60.369 47.826 0.00 0.00 0.00 3.09
465 466 2.167693 CCCACGAGGTAATGAAGTGCTA 59.832 50.000 0.00 0.00 0.00 3.49
466 467 1.066143 CCCACGAGGTAATGAAGTGCT 60.066 52.381 0.00 0.00 0.00 4.40
467 468 1.369625 CCCACGAGGTAATGAAGTGC 58.630 55.000 0.00 0.00 0.00 4.40
468 469 1.066143 AGCCCACGAGGTAATGAAGTG 60.066 52.381 0.00 0.00 38.26 3.16
469 470 1.207329 GAGCCCACGAGGTAATGAAGT 59.793 52.381 0.00 0.00 38.26 3.01
470 471 1.473434 GGAGCCCACGAGGTAATGAAG 60.473 57.143 0.00 0.00 38.26 3.02
471 472 0.539986 GGAGCCCACGAGGTAATGAA 59.460 55.000 0.00 0.00 38.26 2.57
472 473 1.335132 GGGAGCCCACGAGGTAATGA 61.335 60.000 0.00 0.00 38.26 2.57
473 474 1.146263 GGGAGCCCACGAGGTAATG 59.854 63.158 0.00 0.00 38.26 1.90
474 475 0.620700 AAGGGAGCCCACGAGGTAAT 60.621 55.000 8.53 0.00 38.92 1.89
475 476 1.229400 AAGGGAGCCCACGAGGTAA 60.229 57.895 8.53 0.00 38.92 2.85
476 477 1.987855 CAAGGGAGCCCACGAGGTA 60.988 63.158 8.53 0.00 38.92 3.08
477 478 3.322466 CAAGGGAGCCCACGAGGT 61.322 66.667 8.53 0.00 38.92 3.85
478 479 4.785453 GCAAGGGAGCCCACGAGG 62.785 72.222 8.53 0.00 38.92 4.63
479 480 1.971505 TATGCAAGGGAGCCCACGAG 61.972 60.000 8.53 0.00 38.92 4.18
480 481 1.992834 TATGCAAGGGAGCCCACGA 60.993 57.895 8.53 0.00 38.92 4.35
481 482 1.819632 GTATGCAAGGGAGCCCACG 60.820 63.158 8.53 0.00 38.92 4.94
482 483 1.453928 GGTATGCAAGGGAGCCCAC 60.454 63.158 8.53 0.00 38.92 4.61
483 484 2.689691 GGGTATGCAAGGGAGCCCA 61.690 63.158 8.53 0.00 38.92 5.36
484 485 1.937924 AAGGGTATGCAAGGGAGCCC 61.938 60.000 0.00 0.00 36.46 5.19
485 486 0.466372 GAAGGGTATGCAAGGGAGCC 60.466 60.000 0.00 0.00 0.00 4.70
486 487 0.466372 GGAAGGGTATGCAAGGGAGC 60.466 60.000 0.00 0.00 0.00 4.70
487 488 0.179045 CGGAAGGGTATGCAAGGGAG 60.179 60.000 0.00 0.00 0.00 4.30
488 489 0.619255 TCGGAAGGGTATGCAAGGGA 60.619 55.000 0.00 0.00 0.00 4.20
489 490 0.179045 CTCGGAAGGGTATGCAAGGG 60.179 60.000 0.00 0.00 0.00 3.95
490 491 3.386543 CTCGGAAGGGTATGCAAGG 57.613 57.895 0.00 0.00 0.00 3.61
499 500 0.680061 GCCAGGTATACTCGGAAGGG 59.320 60.000 13.36 2.71 37.84 3.95
500 501 0.680061 GGCCAGGTATACTCGGAAGG 59.320 60.000 13.36 4.15 0.00 3.46
501 502 1.410004 TGGCCAGGTATACTCGGAAG 58.590 55.000 0.00 0.00 0.00 3.46
502 503 1.868713 TTGGCCAGGTATACTCGGAA 58.131 50.000 5.11 0.11 0.00 4.30
503 504 1.483415 GTTTGGCCAGGTATACTCGGA 59.517 52.381 5.11 0.00 0.00 4.55
504 505 1.208535 TGTTTGGCCAGGTATACTCGG 59.791 52.381 5.11 4.89 0.00 4.63
505 506 2.550978 CTGTTTGGCCAGGTATACTCG 58.449 52.381 5.11 0.00 0.00 4.18
506 507 2.919228 CCTGTTTGGCCAGGTATACTC 58.081 52.381 5.11 0.00 45.81 2.59
544 545 2.440247 ATTAGCACAAGCCGGGCC 60.440 61.111 17.02 0.00 43.56 5.80
545 546 2.823829 CGATTAGCACAAGCCGGGC 61.824 63.158 12.11 12.11 43.56 6.13
546 547 1.449601 ACGATTAGCACAAGCCGGG 60.450 57.895 2.18 0.00 43.56 5.73
547 548 1.715585 CACGATTAGCACAAGCCGG 59.284 57.895 0.00 0.00 43.56 6.13
548 549 1.060937 GCACGATTAGCACAAGCCG 59.939 57.895 0.00 0.00 43.56 5.52
549 550 1.026718 AGGCACGATTAGCACAAGCC 61.027 55.000 0.00 0.00 43.56 4.35
550 551 0.097674 CAGGCACGATTAGCACAAGC 59.902 55.000 0.00 0.00 42.56 4.01
551 552 0.729116 CCAGGCACGATTAGCACAAG 59.271 55.000 0.00 0.00 0.00 3.16
552 553 1.305219 GCCAGGCACGATTAGCACAA 61.305 55.000 6.55 0.00 0.00 3.33
553 554 1.745115 GCCAGGCACGATTAGCACA 60.745 57.895 6.55 0.00 0.00 4.57
554 555 2.472909 GGCCAGGCACGATTAGCAC 61.473 63.158 15.19 0.00 0.00 4.40
555 556 2.124736 GGCCAGGCACGATTAGCA 60.125 61.111 15.19 0.00 0.00 3.49
556 557 2.902343 GGGCCAGGCACGATTAGC 60.902 66.667 15.19 0.00 0.00 3.09
581 582 1.662438 ATTAAACGTGCCATGGCGGG 61.662 55.000 30.87 25.76 45.51 6.13
582 583 1.002900 CTATTAAACGTGCCATGGCGG 60.003 52.381 30.87 26.12 45.51 6.13
583 584 1.596954 GCTATTAAACGTGCCATGGCG 60.597 52.381 30.87 20.22 45.51 5.69
584 585 1.269051 GGCTATTAAACGTGCCATGGC 60.269 52.381 30.54 30.54 44.34 4.40
585 586 1.002900 CGGCTATTAAACGTGCCATGG 60.003 52.381 7.63 7.63 45.13 3.66
586 587 1.002900 CCGGCTATTAAACGTGCCATG 60.003 52.381 12.24 0.00 45.13 3.66
587 588 1.305201 CCGGCTATTAAACGTGCCAT 58.695 50.000 12.24 0.00 45.13 4.40
588 589 0.745128 CCCGGCTATTAAACGTGCCA 60.745 55.000 12.24 0.00 45.13 4.92
589 590 2.019337 CCCGGCTATTAAACGTGCC 58.981 57.895 0.00 2.35 41.76 5.01
590 591 1.354155 GCCCGGCTATTAAACGTGC 59.646 57.895 0.71 0.00 0.00 5.34
591 592 1.768112 CGGCCCGGCTATTAAACGTG 61.768 60.000 9.86 0.00 0.00 4.49
592 593 1.522130 CGGCCCGGCTATTAAACGT 60.522 57.895 9.86 0.00 0.00 3.99
593 594 1.522130 ACGGCCCGGCTATTAAACG 60.522 57.895 8.57 4.87 0.00 3.60
594 595 2.019337 CACGGCCCGGCTATTAAAC 58.981 57.895 8.57 0.00 0.00 2.01
595 596 1.820481 GCACGGCCCGGCTATTAAA 60.820 57.895 8.57 0.00 0.00 1.52
596 597 2.203098 GCACGGCCCGGCTATTAA 60.203 61.111 8.57 0.00 0.00 1.40
597 598 4.244463 GGCACGGCCCGGCTATTA 62.244 66.667 8.57 0.00 44.06 0.98
624 625 4.093952 CAAAGAGCAGCGCCCGTG 62.094 66.667 2.29 0.00 0.00 4.94
628 629 3.808656 GAGCCAAAGAGCAGCGCC 61.809 66.667 2.29 0.00 34.23 6.53
629 630 3.036783 CTGAGCCAAAGAGCAGCGC 62.037 63.158 0.00 0.00 34.23 5.92
630 631 2.396955 CCTGAGCCAAAGAGCAGCG 61.397 63.158 0.00 0.00 34.23 5.18
631 632 2.698763 GCCTGAGCCAAAGAGCAGC 61.699 63.158 0.00 0.00 34.23 5.25
632 633 1.303074 TGCCTGAGCCAAAGAGCAG 60.303 57.895 0.00 0.00 38.69 4.24
633 634 1.601759 GTGCCTGAGCCAAAGAGCA 60.602 57.895 0.00 0.00 38.69 4.26
634 635 2.684843 CGTGCCTGAGCCAAAGAGC 61.685 63.158 0.00 0.00 38.69 4.09
635 636 1.004560 TCGTGCCTGAGCCAAAGAG 60.005 57.895 0.00 0.00 38.69 2.85
636 637 1.301716 GTCGTGCCTGAGCCAAAGA 60.302 57.895 0.00 0.00 38.69 2.52
637 638 2.328099 GGTCGTGCCTGAGCCAAAG 61.328 63.158 0.00 0.00 38.69 2.77
638 639 2.281484 GGTCGTGCCTGAGCCAAA 60.281 61.111 0.00 0.00 38.69 3.28
647 648 2.601763 CGTTTACTAATCAGGTCGTGCC 59.398 50.000 0.00 0.00 37.58 5.01
648 649 2.601763 CCGTTTACTAATCAGGTCGTGC 59.398 50.000 0.00 0.00 0.00 5.34
649 650 3.184541 CCCGTTTACTAATCAGGTCGTG 58.815 50.000 0.00 0.00 0.00 4.35
650 651 2.417787 GCCCGTTTACTAATCAGGTCGT 60.418 50.000 0.00 0.00 0.00 4.34
651 652 2.199236 GCCCGTTTACTAATCAGGTCG 58.801 52.381 0.00 0.00 0.00 4.79
652 653 2.558378 GGCCCGTTTACTAATCAGGTC 58.442 52.381 0.00 0.00 0.00 3.85
653 654 1.134610 CGGCCCGTTTACTAATCAGGT 60.135 52.381 0.00 0.00 0.00 4.00
654 655 1.578583 CGGCCCGTTTACTAATCAGG 58.421 55.000 0.00 0.00 0.00 3.86
655 656 1.578583 CCGGCCCGTTTACTAATCAG 58.421 55.000 0.85 0.00 0.00 2.90
656 657 0.462403 GCCGGCCCGTTTACTAATCA 60.462 55.000 18.11 0.00 0.00 2.57
657 658 1.162181 GGCCGGCCCGTTTACTAATC 61.162 60.000 36.64 4.14 0.00 1.75
658 659 1.153107 GGCCGGCCCGTTTACTAAT 60.153 57.895 36.64 0.00 0.00 1.73
659 660 2.268600 GGCCGGCCCGTTTACTAA 59.731 61.111 36.64 0.00 0.00 2.24
675 676 1.077787 TGCTAAACAGGCCATCGGG 60.078 57.895 5.01 0.00 37.18 5.14
676 677 1.705337 CGTGCTAAACAGGCCATCGG 61.705 60.000 5.01 0.00 0.00 4.18
677 678 1.715585 CGTGCTAAACAGGCCATCG 59.284 57.895 5.01 0.00 0.00 3.84
683 684 0.392998 ATCCCAGCGTGCTAAACAGG 60.393 55.000 0.00 0.00 37.22 4.00
684 685 0.729116 CATCCCAGCGTGCTAAACAG 59.271 55.000 0.00 0.00 0.00 3.16
685 686 1.305219 GCATCCCAGCGTGCTAAACA 61.305 55.000 0.00 0.00 38.30 2.83
686 687 1.305219 TGCATCCCAGCGTGCTAAAC 61.305 55.000 0.00 0.00 41.78 2.01
687 688 1.002746 TGCATCCCAGCGTGCTAAA 60.003 52.632 0.00 0.00 41.78 1.85
688 689 1.745115 GTGCATCCCAGCGTGCTAA 60.745 57.895 0.00 0.00 41.78 3.09
689 690 2.125147 GTGCATCCCAGCGTGCTA 60.125 61.111 0.00 0.00 41.78 3.49
690 691 2.256072 TATGTGCATCCCAGCGTGCT 62.256 55.000 0.00 0.00 41.78 4.40
691 692 1.168407 ATATGTGCATCCCAGCGTGC 61.168 55.000 0.00 0.00 41.61 5.34
692 693 1.311859 AATATGTGCATCCCAGCGTG 58.688 50.000 0.00 0.00 37.31 5.34
693 694 2.928801 TAATATGTGCATCCCAGCGT 57.071 45.000 0.00 0.00 37.31 5.07
694 695 3.304659 GGTTTAATATGTGCATCCCAGCG 60.305 47.826 0.00 0.00 37.31 5.18
695 696 3.891366 AGGTTTAATATGTGCATCCCAGC 59.109 43.478 0.00 0.00 0.00 4.85
696 697 4.889409 ACAGGTTTAATATGTGCATCCCAG 59.111 41.667 0.00 0.00 0.00 4.45
697 698 4.865905 ACAGGTTTAATATGTGCATCCCA 58.134 39.130 0.00 0.00 0.00 4.37
698 699 5.451798 CCAACAGGTTTAATATGTGCATCCC 60.452 44.000 0.00 0.00 0.00 3.85
699 700 5.451798 CCCAACAGGTTTAATATGTGCATCC 60.452 44.000 0.00 0.00 0.00 3.51
700 701 5.591099 CCCAACAGGTTTAATATGTGCATC 58.409 41.667 0.00 0.00 0.00 3.91
701 702 4.141959 GCCCAACAGGTTTAATATGTGCAT 60.142 41.667 0.00 0.00 38.26 3.96
702 703 3.194542 GCCCAACAGGTTTAATATGTGCA 59.805 43.478 0.00 0.00 38.26 4.57
703 704 3.447229 AGCCCAACAGGTTTAATATGTGC 59.553 43.478 0.00 0.00 38.26 4.57
704 705 4.462483 ACAGCCCAACAGGTTTAATATGTG 59.538 41.667 0.00 0.00 38.26 3.21
705 706 4.462483 CACAGCCCAACAGGTTTAATATGT 59.538 41.667 0.00 0.00 38.26 2.29
706 707 4.462483 ACACAGCCCAACAGGTTTAATATG 59.538 41.667 0.00 0.00 38.26 1.78
707 708 4.672899 ACACAGCCCAACAGGTTTAATAT 58.327 39.130 0.00 0.00 38.26 1.28
708 709 4.107127 ACACAGCCCAACAGGTTTAATA 57.893 40.909 0.00 0.00 38.26 0.98
709 710 2.957474 ACACAGCCCAACAGGTTTAAT 58.043 42.857 0.00 0.00 38.26 1.40
710 711 2.445682 ACACAGCCCAACAGGTTTAA 57.554 45.000 0.00 0.00 38.26 1.52
711 712 2.445682 AACACAGCCCAACAGGTTTA 57.554 45.000 0.00 0.00 38.26 2.01
712 713 1.567357 AAACACAGCCCAACAGGTTT 58.433 45.000 0.00 0.00 38.26 3.27
713 714 1.567357 AAAACACAGCCCAACAGGTT 58.433 45.000 0.00 0.00 38.26 3.50
714 715 2.306847 CTAAAACACAGCCCAACAGGT 58.693 47.619 0.00 0.00 38.26 4.00
715 716 1.613437 CCTAAAACACAGCCCAACAGG 59.387 52.381 0.00 0.00 39.47 4.00
716 717 1.000274 GCCTAAAACACAGCCCAACAG 60.000 52.381 0.00 0.00 0.00 3.16
717 718 1.036707 GCCTAAAACACAGCCCAACA 58.963 50.000 0.00 0.00 0.00 3.33
718 719 0.317160 GGCCTAAAACACAGCCCAAC 59.683 55.000 0.00 0.00 39.60 3.77
719 720 2.740121 GGCCTAAAACACAGCCCAA 58.260 52.632 0.00 0.00 39.60 4.12
720 721 4.511838 GGCCTAAAACACAGCCCA 57.488 55.556 0.00 0.00 39.60 5.36
722 723 2.427095 CCAATAGGCCTAAAACACAGCC 59.573 50.000 18.42 0.00 46.13 4.85
723 724 2.427095 CCCAATAGGCCTAAAACACAGC 59.573 50.000 18.42 0.00 0.00 4.40
736 737 9.802039 TTTACACCTAAAATATAGCCCAATAGG 57.198 33.333 0.00 0.00 35.62 2.57
789 790 1.605968 GGCACGGCCCGTTTAATTTTT 60.606 47.619 5.76 0.00 44.06 1.94
790 791 0.038067 GGCACGGCCCGTTTAATTTT 60.038 50.000 5.76 0.00 44.06 1.82
791 792 1.587568 GGCACGGCCCGTTTAATTT 59.412 52.632 5.76 0.00 44.06 1.82
792 793 3.280211 GGCACGGCCCGTTTAATT 58.720 55.556 5.76 0.00 44.06 1.40
830 831 4.021925 ACGTCTTGGGCCTGGAGC 62.022 66.667 4.53 0.00 42.60 4.70
831 832 2.046892 CACGTCTTGGGCCTGGAG 60.047 66.667 4.53 0.00 0.00 3.86
832 833 4.329545 GCACGTCTTGGGCCTGGA 62.330 66.667 4.53 0.00 0.00 3.86
858 859 3.122971 GCTAAACGGGCCGTGACC 61.123 66.667 34.87 17.35 39.99 4.02
859 860 3.122971 GGCTAAACGGGCCGTGAC 61.123 66.667 34.87 19.64 39.99 3.67
941 942 0.180406 AGTATAGCTGGCCAAACGGG 59.820 55.000 7.01 0.00 40.85 5.28
942 943 1.940613 GAAGTATAGCTGGCCAAACGG 59.059 52.381 7.01 0.00 0.00 4.44
943 944 1.940613 GGAAGTATAGCTGGCCAAACG 59.059 52.381 7.01 0.00 0.00 3.60
944 945 1.940613 CGGAAGTATAGCTGGCCAAAC 59.059 52.381 7.01 1.16 0.00 2.93
945 946 1.834896 TCGGAAGTATAGCTGGCCAAA 59.165 47.619 7.01 0.00 0.00 3.28
946 947 1.412710 CTCGGAAGTATAGCTGGCCAA 59.587 52.381 7.01 0.00 0.00 4.52
947 948 1.040646 CTCGGAAGTATAGCTGGCCA 58.959 55.000 4.71 4.71 0.00 5.36
948 949 0.318762 CCTCGGAAGTATAGCTGGCC 59.681 60.000 0.00 0.00 0.00 5.36
949 950 0.319986 GCCTCGGAAGTATAGCTGGC 60.320 60.000 0.00 0.00 0.00 4.85
950 951 1.040646 TGCCTCGGAAGTATAGCTGG 58.959 55.000 0.00 0.00 0.00 4.85
951 952 2.297315 TGATGCCTCGGAAGTATAGCTG 59.703 50.000 0.00 0.00 0.00 4.24
952 953 2.598565 TGATGCCTCGGAAGTATAGCT 58.401 47.619 0.00 0.00 0.00 3.32
953 954 3.386768 TTGATGCCTCGGAAGTATAGC 57.613 47.619 0.00 0.00 0.00 2.97
954 955 4.693283 TGTTTGATGCCTCGGAAGTATAG 58.307 43.478 0.00 0.00 0.00 1.31
955 956 4.161565 ACTGTTTGATGCCTCGGAAGTATA 59.838 41.667 0.00 0.00 0.00 1.47
956 957 3.055094 ACTGTTTGATGCCTCGGAAGTAT 60.055 43.478 0.00 0.00 0.00 2.12
957 958 2.301870 ACTGTTTGATGCCTCGGAAGTA 59.698 45.455 0.00 0.00 0.00 2.24
958 959 1.072331 ACTGTTTGATGCCTCGGAAGT 59.928 47.619 0.00 0.00 0.00 3.01
968 969 3.310774 CGGGCTTCTGATACTGTTTGATG 59.689 47.826 0.00 0.00 0.00 3.07
970 971 2.354704 CCGGGCTTCTGATACTGTTTGA 60.355 50.000 0.00 0.00 0.00 2.69
978 982 1.143183 GCGTTCCGGGCTTCTGATA 59.857 57.895 0.00 0.00 0.00 2.15
980 984 4.388499 GGCGTTCCGGGCTTCTGA 62.388 66.667 0.00 0.00 0.00 3.27
1251 1261 1.673808 CCCTGTAGGTGTAGGCGTCC 61.674 65.000 0.00 0.00 32.58 4.79
1398 1408 3.644399 GAAGTCGGCCGACCTGACC 62.644 68.421 45.66 28.86 45.59 4.02
1606 1616 1.292223 CCAGTCCTTCTTCGGCGAA 59.708 57.895 22.33 22.33 0.00 4.70
1635 1645 0.820226 CACGCTCTTCCCTCATCTCA 59.180 55.000 0.00 0.00 0.00 3.27
1725 1735 1.995542 ACTGACCCATGAACCCATCTT 59.004 47.619 0.00 0.00 0.00 2.40
1787 1797 5.993441 CACTTGACATACATATCCAGCATCA 59.007 40.000 0.00 0.00 0.00 3.07
1816 1826 1.663173 GCCGAGCATCCTCTACCTC 59.337 63.158 0.00 0.00 35.90 3.85
1819 1829 2.017559 AACCGCCGAGCATCCTCTAC 62.018 60.000 0.00 0.00 35.90 2.59
1851 1861 4.157656 CAGAGAACAAGGTCAACAAAACCA 59.842 41.667 0.00 0.00 39.39 3.67
1950 1960 2.440501 GAATTAGGAACAATGCGCACG 58.559 47.619 14.90 10.19 0.00 5.34
2100 2110 5.570206 CACTGCTTTACACTTTGCATACATG 59.430 40.000 0.00 0.00 34.79 3.21
2139 2149 7.280876 TCCTTGTTCGAGATTCTTCCAAATATG 59.719 37.037 0.00 0.00 0.00 1.78
2154 2164 3.130633 TGTGACAACATCCTTGTTCGAG 58.869 45.455 0.00 0.00 44.24 4.04
2265 2275 0.320247 CTACGGAGATGGCATCAGGC 60.320 60.000 27.93 16.44 43.74 4.85
2353 2364 1.135689 GGACAGAAATGCGCGTTTGAT 60.136 47.619 30.96 16.73 0.00 2.57
2360 2371 2.352503 AATGTTGGACAGAAATGCGC 57.647 45.000 0.00 0.00 0.00 6.09
2421 2432 1.270274 CTCTGAGCAGATGGGAGATCG 59.730 57.143 0.00 0.00 36.76 3.69
2502 2513 1.069765 AGAATCGCCCTGCATACCG 59.930 57.895 0.00 0.00 0.00 4.02
2649 2660 3.573538 TGTTGAAATACTGTGCCATGCTT 59.426 39.130 0.00 0.00 0.00 3.91
2748 2759 5.252969 GCATTGGCATCTTCTGTATGAAA 57.747 39.130 0.00 0.00 40.72 2.69
2885 2896 6.017400 AGTTGGACATCAGCACATAAAAAG 57.983 37.500 0.00 0.00 0.00 2.27
2898 2909 7.604164 CCATATGAGGTATACAAGTTGGACATC 59.396 40.741 7.96 9.64 0.00 3.06
2922 2933 3.969976 CAAGAGACTTATCCCATCTCCCA 59.030 47.826 0.00 0.00 39.84 4.37
2928 2939 5.248020 CCTGATAGCAAGAGACTTATCCCAT 59.752 44.000 0.00 0.00 0.00 4.00
2988 2999 3.957586 CCCACAGAGCTGCACCCA 61.958 66.667 1.02 0.00 0.00 4.51
3025 3036 4.098914 TGGCCTTTGTTACAGAACATCT 57.901 40.909 3.32 0.00 44.96 2.90
3034 3045 7.625828 AATACAACTCTATGGCCTTTGTTAC 57.374 36.000 3.32 0.00 32.73 2.50
3160 3185 5.362717 CCACAGTCTACATTACACCATCCTA 59.637 44.000 0.00 0.00 0.00 2.94
3168 3193 4.587262 ACACACTCCACAGTCTACATTACA 59.413 41.667 0.00 0.00 0.00 2.41
3200 3225 5.393068 AAATTTGAGCCATATCCTCAGGA 57.607 39.130 0.00 0.00 40.16 3.86
3241 3266 7.496346 TTTGACCTTATCAGTTATCCTCACT 57.504 36.000 0.00 0.00 38.99 3.41
3242 3267 8.738645 AATTTGACCTTATCAGTTATCCTCAC 57.261 34.615 0.00 0.00 38.99 3.51
3275 3300 7.419518 CCAGGTATACTCATCACCTCAGATTTT 60.420 40.741 2.25 0.00 40.77 1.82
3285 3310 4.122776 CACTTGCCAGGTATACTCATCAC 58.877 47.826 2.25 0.00 0.00 3.06
3325 3350 2.813754 TGTAGCTTCAACATGAACAGCC 59.186 45.455 0.00 0.00 30.59 4.85
3326 3351 4.691860 ATGTAGCTTCAACATGAACAGC 57.308 40.909 0.00 1.07 36.24 4.40
3375 3419 5.001232 TCTAACAGTACATTTTGGTGAGGC 58.999 41.667 0.00 0.00 0.00 4.70
3491 3550 2.035576 GCTTCTTCATGAATCATGGGCC 59.964 50.000 21.58 0.00 41.66 5.80
3494 3553 5.962433 ACAAAGCTTCTTCATGAATCATGG 58.038 37.500 21.58 8.10 41.66 3.66
3511 3570 1.372128 CGCTGGAGGCAAACAAAGC 60.372 57.895 0.00 0.00 41.91 3.51
3534 3593 6.821665 TCAGTATAGACAACCAGGCATTTTAC 59.178 38.462 0.00 0.00 0.00 2.01
3549 3608 7.178274 AGGATCCAGATGTCATTCAGTATAGAC 59.822 40.741 15.82 0.00 0.00 2.59
3551 3610 7.178097 TCAGGATCCAGATGTCATTCAGTATAG 59.822 40.741 15.82 0.00 0.00 1.31
3563 3622 1.576577 TGCAGTCAGGATCCAGATGT 58.423 50.000 15.82 0.02 0.00 3.06
3651 3718 5.543790 TGGCCAGCTTATGAGACAAGATATA 59.456 40.000 0.00 0.00 0.00 0.86
3652 3719 4.349048 TGGCCAGCTTATGAGACAAGATAT 59.651 41.667 0.00 0.00 0.00 1.63
3671 3738 1.467342 GACAACCACGAACTATTGGCC 59.533 52.381 0.00 0.00 36.20 5.36
3673 3740 4.000325 TCATGACAACCACGAACTATTGG 59.000 43.478 0.00 0.00 39.00 3.16
3683 3750 6.506500 AGAAATGAGATTCATGACAACCAC 57.493 37.500 0.00 0.00 37.15 4.16
3686 3753 8.456471 TGATGAAGAAATGAGATTCATGACAAC 58.544 33.333 0.00 0.00 42.25 3.32
3761 3828 4.674281 AGCAGTACCAGTAGGCTTAATC 57.326 45.455 0.00 0.00 39.06 1.75
3780 3848 8.743099 GGCTAAATTCAAATCGTGTTAAATAGC 58.257 33.333 0.00 0.00 0.00 2.97
3832 3901 3.181472 GCCATTGGCCAAAGATTTAGGAG 60.181 47.826 24.71 3.57 44.06 3.69
3833 3902 2.765699 GCCATTGGCCAAAGATTTAGGA 59.234 45.455 24.71 0.00 44.06 2.94
3834 3903 3.183793 GCCATTGGCCAAAGATTTAGG 57.816 47.619 24.71 15.68 44.06 2.69
3861 3930 4.092529 CCAGATTTCGAGACATGTGTTCTG 59.907 45.833 1.15 8.84 0.00 3.02
3898 3967 4.321718 CAGAATCTTCTTCAGCCAGTCAA 58.678 43.478 0.00 0.00 34.74 3.18
3899 3968 3.867600 GCAGAATCTTCTTCAGCCAGTCA 60.868 47.826 0.00 0.00 34.74 3.41
3900 3969 2.677337 GCAGAATCTTCTTCAGCCAGTC 59.323 50.000 0.00 0.00 34.74 3.51
3901 3970 2.617532 GGCAGAATCTTCTTCAGCCAGT 60.618 50.000 14.28 0.00 41.20 4.00
3902 3971 2.015587 GGCAGAATCTTCTTCAGCCAG 58.984 52.381 14.28 0.00 41.20 4.85
3903 3972 1.352017 TGGCAGAATCTTCTTCAGCCA 59.648 47.619 16.97 16.97 45.81 4.75
3910 3979 3.265221 TCTTGGTCATGGCAGAATCTTCT 59.735 43.478 0.00 0.00 38.25 2.85
3936 4005 0.322008 AGGTTTGCTGCTGAGCTACC 60.322 55.000 5.83 5.65 46.39 3.18
3999 4068 1.673665 CGAGGGCAGCTCTTTTGCT 60.674 57.895 0.00 0.00 45.18 3.91


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.