Multiple sequence alignment - TraesCS7D01G152000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G152000 chr7D 100.000 3308 0 0 1 3308 100985451 100988758 0.000000e+00 6109.0
1 TraesCS7D01G152000 chr7D 83.811 1291 184 16 1004 2280 100306435 100307714 0.000000e+00 1203.0
2 TraesCS7D01G152000 chr7D 82.609 1311 196 25 1004 2295 100940839 100939542 0.000000e+00 1129.0
3 TraesCS7D01G152000 chr7B 93.515 1943 67 25 653 2566 57267693 57269605 0.000000e+00 2835.0
4 TraesCS7D01G152000 chr7B 82.908 1293 188 24 1004 2280 56389058 56390333 0.000000e+00 1133.0
5 TraesCS7D01G152000 chr7B 82.740 1292 196 19 1004 2280 57067223 57065944 0.000000e+00 1125.0
6 TraesCS7D01G152000 chr7B 88.209 441 28 8 2588 3023 57269851 57270272 3.810000e-139 505.0
7 TraesCS7D01G152000 chr7B 91.954 261 13 4 3 261 57265635 57265889 3.140000e-95 359.0
8 TraesCS7D01G152000 chr7A 94.749 1771 59 18 996 2749 103114548 103116301 0.000000e+00 2724.0
9 TraesCS7D01G152000 chr7A 83.926 1294 180 18 1004 2280 103072780 103071498 0.000000e+00 1212.0
10 TraesCS7D01G152000 chr7A 87.189 281 20 12 390 661 103113802 103114075 4.150000e-79 305.0
11 TraesCS7D01G152000 chr7A 99.367 158 0 1 3151 3308 17978819 17978975 5.400000e-73 285.0
12 TraesCS7D01G152000 chr7A 88.312 77 8 1 2737 2812 103116471 103116547 1.260000e-14 91.6
13 TraesCS7D01G152000 chr3B 91.845 1447 107 6 1011 2447 560556399 560557844 0.000000e+00 2008.0
14 TraesCS7D01G152000 chr3B 85.075 67 5 3 2551 2617 560557971 560558032 2.760000e-06 63.9
15 TraesCS7D01G152000 chr3D 92.407 1396 96 5 1011 2397 428532629 428534023 0.000000e+00 1982.0
16 TraesCS7D01G152000 chr3D 86.154 65 9 0 3016 3080 133105890 133105826 1.650000e-08 71.3
17 TraesCS7D01G152000 chr6A 98.734 158 1 1 3151 3308 16360007 16360163 2.510000e-71 279.0
18 TraesCS7D01G152000 chr6A 100.000 151 0 0 3158 3308 77165542 77165692 2.510000e-71 279.0
19 TraesCS7D01G152000 chr2A 100.000 151 0 0 3158 3308 585793134 585792984 2.510000e-71 279.0
20 TraesCS7D01G152000 chr5B 98.726 157 0 1 3152 3308 35238248 35238402 9.040000e-71 278.0
21 TraesCS7D01G152000 chr5B 97.546 163 3 1 3147 3308 557109114 557109276 9.040000e-71 278.0
22 TraesCS7D01G152000 chr5B 96.951 164 3 2 3146 3308 419621790 419621952 1.170000e-69 274.0
23 TraesCS7D01G152000 chrUn 96.970 165 3 2 3145 3308 74769950 74769787 3.250000e-70 276.0
24 TraesCS7D01G152000 chrUn 98.125 160 0 3 3151 3308 108724604 108724762 3.250000e-70 276.0
25 TraesCS7D01G152000 chrUn 97.059 34 1 0 2063 2096 339715642 339715609 1.280000e-04 58.4
26 TraesCS7D01G152000 chr6B 100.000 33 0 0 3016 3048 693039691 693039659 9.910000e-06 62.1
27 TraesCS7D01G152000 chr4D 96.970 33 1 0 3016 3048 508346736 508346704 4.610000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G152000 chr7D 100985451 100988758 3307 False 6109.00 6109 100.000000 1 3308 1 chr7D.!!$F2 3307
1 TraesCS7D01G152000 chr7D 100306435 100307714 1279 False 1203.00 1203 83.811000 1004 2280 1 chr7D.!!$F1 1276
2 TraesCS7D01G152000 chr7D 100939542 100940839 1297 True 1129.00 1129 82.609000 1004 2295 1 chr7D.!!$R1 1291
3 TraesCS7D01G152000 chr7B 57265635 57270272 4637 False 1233.00 2835 91.226000 3 3023 3 chr7B.!!$F2 3020
4 TraesCS7D01G152000 chr7B 56389058 56390333 1275 False 1133.00 1133 82.908000 1004 2280 1 chr7B.!!$F1 1276
5 TraesCS7D01G152000 chr7B 57065944 57067223 1279 True 1125.00 1125 82.740000 1004 2280 1 chr7B.!!$R1 1276
6 TraesCS7D01G152000 chr7A 103071498 103072780 1282 True 1212.00 1212 83.926000 1004 2280 1 chr7A.!!$R1 1276
7 TraesCS7D01G152000 chr7A 103113802 103116547 2745 False 1040.20 2724 90.083333 390 2812 3 chr7A.!!$F2 2422
8 TraesCS7D01G152000 chr3B 560556399 560558032 1633 False 1035.95 2008 88.460000 1011 2617 2 chr3B.!!$F1 1606
9 TraesCS7D01G152000 chr3D 428532629 428534023 1394 False 1982.00 1982 92.407000 1011 2397 1 chr3D.!!$F1 1386

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
550 574 0.107214 TTTTATCCTGAGCTGGCCGG 60.107 55.0 7.41 7.41 0.0 6.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2510 4344 0.394352 ATCTGCTTTACCTTGCCCGG 60.394 55.0 0.0 0.0 0.0 5.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
137 138 5.500290 CGAAGAAGTACATCGCCATTTGTAC 60.500 44.000 5.33 5.33 45.44 2.90
151 152 6.317857 GCCATTTGTACTGACAGAAAATCTC 58.682 40.000 10.08 3.38 36.76 2.75
153 154 6.656693 CCATTTGTACTGACAGAAAATCTCCT 59.343 38.462 10.08 0.00 36.76 3.69
154 155 7.175641 CCATTTGTACTGACAGAAAATCTCCTT 59.824 37.037 10.08 0.00 36.76 3.36
158 160 6.483307 TGTACTGACAGAAAATCTCCTTGTTG 59.517 38.462 10.08 0.00 0.00 3.33
162 164 7.721399 ACTGACAGAAAATCTCCTTGTTGTATT 59.279 33.333 10.08 0.00 0.00 1.89
181 183 2.943036 TCTCCAACCAGGTAAACACC 57.057 50.000 0.00 0.00 39.02 4.16
184 186 3.081804 CTCCAACCAGGTAAACACCATC 58.918 50.000 0.00 0.00 39.02 3.51
219 221 1.760086 CCTCGAGCCTCCACAGGAT 60.760 63.158 6.99 0.00 43.07 3.24
220 222 0.468214 CCTCGAGCCTCCACAGGATA 60.468 60.000 6.99 0.00 39.13 2.59
221 223 0.958091 CTCGAGCCTCCACAGGATAG 59.042 60.000 0.00 0.00 39.13 2.08
222 224 0.468214 TCGAGCCTCCACAGGATAGG 60.468 60.000 0.00 0.00 39.13 2.57
223 225 1.751563 GAGCCTCCACAGGATAGGC 59.248 63.158 7.95 7.95 39.13 3.93
243 245 3.834231 GGCAATTTATGGGACCAGCATAT 59.166 43.478 0.00 0.00 0.00 1.78
261 263 7.229306 CCAGCATATACACACATGAATAACCTT 59.771 37.037 0.00 0.00 0.00 3.50
262 264 8.623903 CAGCATATACACACATGAATAACCTTT 58.376 33.333 0.00 0.00 0.00 3.11
263 265 9.189156 AGCATATACACACATGAATAACCTTTT 57.811 29.630 0.00 0.00 0.00 2.27
264 266 9.801873 GCATATACACACATGAATAACCTTTTT 57.198 29.630 0.00 0.00 0.00 1.94
288 290 9.807921 TTTTAGAAAAGGACAGATGAATAACCT 57.192 29.630 0.00 0.00 0.00 3.50
289 291 9.807921 TTTAGAAAAGGACAGATGAATAACCTT 57.192 29.630 0.00 0.00 39.05 3.50
290 292 9.807921 TTAGAAAAGGACAGATGAATAACCTTT 57.192 29.630 0.00 0.00 45.57 3.11
340 342 9.778993 CATGAGAGAATGAAACATTATTTTCGT 57.221 29.630 0.00 0.00 38.17 3.85
372 396 2.729467 CGACAAGTAGCTTCTGTCGGAG 60.729 54.545 25.41 8.38 45.61 4.63
379 403 1.079543 CTTCTGTCGGAGGGCACAG 60.080 63.158 0.00 0.00 41.32 3.66
380 404 1.821061 CTTCTGTCGGAGGGCACAGT 61.821 60.000 0.00 0.00 40.85 3.55
437 461 1.069765 CGGATATCGCAGGTTGCCT 59.930 57.895 0.00 0.00 41.12 4.75
473 497 2.223044 GCGATCTTCATTTTCCACGACC 60.223 50.000 0.00 0.00 0.00 4.79
491 515 1.959042 CCATCGATTTGGTGAGGAGG 58.041 55.000 0.00 0.00 31.74 4.30
506 530 2.529389 AGGACACCCACTCCACCC 60.529 66.667 0.00 0.00 33.88 4.61
507 531 3.647771 GGACACCCACTCCACCCC 61.648 72.222 0.00 0.00 0.00 4.95
508 532 2.852075 GACACCCACTCCACCCCA 60.852 66.667 0.00 0.00 0.00 4.96
509 533 3.175710 ACACCCACTCCACCCCAC 61.176 66.667 0.00 0.00 0.00 4.61
538 562 3.096852 CCAACCCCCTCTGTTTTTATCC 58.903 50.000 0.00 0.00 0.00 2.59
539 563 3.245622 CCAACCCCCTCTGTTTTTATCCT 60.246 47.826 0.00 0.00 0.00 3.24
540 564 3.739401 ACCCCCTCTGTTTTTATCCTG 57.261 47.619 0.00 0.00 0.00 3.86
541 565 3.265489 ACCCCCTCTGTTTTTATCCTGA 58.735 45.455 0.00 0.00 0.00 3.86
542 566 3.267031 ACCCCCTCTGTTTTTATCCTGAG 59.733 47.826 0.00 0.00 0.00 3.35
543 567 3.282885 CCCCTCTGTTTTTATCCTGAGC 58.717 50.000 0.00 0.00 0.00 4.26
544 568 3.054065 CCCCTCTGTTTTTATCCTGAGCT 60.054 47.826 0.00 0.00 0.00 4.09
545 569 3.944015 CCCTCTGTTTTTATCCTGAGCTG 59.056 47.826 0.00 0.00 0.00 4.24
546 570 3.944015 CCTCTGTTTTTATCCTGAGCTGG 59.056 47.826 0.00 0.00 0.00 4.85
547 571 3.347216 TCTGTTTTTATCCTGAGCTGGC 58.653 45.455 0.00 0.00 0.00 4.85
548 572 2.424956 CTGTTTTTATCCTGAGCTGGCC 59.575 50.000 0.00 0.00 0.00 5.36
549 573 1.401905 GTTTTTATCCTGAGCTGGCCG 59.598 52.381 0.00 0.00 0.00 6.13
550 574 0.107214 TTTTATCCTGAGCTGGCCGG 60.107 55.000 7.41 7.41 0.00 6.13
592 627 0.109412 CAGGCAAGCAGCTAAAGCAC 60.109 55.000 14.29 6.00 45.16 4.40
593 628 0.538057 AGGCAAGCAGCTAAAGCACA 60.538 50.000 14.29 0.00 45.16 4.57
596 631 1.068055 GCAAGCAGCTAAAGCACACAT 60.068 47.619 4.54 0.00 45.16 3.21
690 2397 1.864176 GACGTGTAAAAGGTGCGGG 59.136 57.895 0.00 0.00 0.00 6.13
760 2467 4.073293 AGCTAGCTAGAGAGACTGAGAC 57.927 50.000 25.15 1.80 0.00 3.36
780 2487 1.670811 CCGAGATTACACATGCCCAAC 59.329 52.381 0.00 0.00 0.00 3.77
794 2505 3.631250 TGCCCAACTCCAATATTTCTCC 58.369 45.455 0.00 0.00 0.00 3.71
813 2524 5.967088 TCTCCAGTCTTATTACACTTGCTC 58.033 41.667 0.00 0.00 0.00 4.26
814 2525 5.717178 TCTCCAGTCTTATTACACTTGCTCT 59.283 40.000 0.00 0.00 0.00 4.09
816 2527 4.800993 CCAGTCTTATTACACTTGCTCTCG 59.199 45.833 0.00 0.00 0.00 4.04
818 2529 6.404403 CCAGTCTTATTACACTTGCTCTCGTA 60.404 42.308 0.00 0.00 0.00 3.43
819 2530 7.027760 CAGTCTTATTACACTTGCTCTCGTAA 58.972 38.462 0.00 0.00 0.00 3.18
820 2531 7.541091 CAGTCTTATTACACTTGCTCTCGTAAA 59.459 37.037 0.00 0.00 0.00 2.01
821 2532 7.755822 AGTCTTATTACACTTGCTCTCGTAAAG 59.244 37.037 0.00 0.00 0.00 1.85
822 2533 7.541437 GTCTTATTACACTTGCTCTCGTAAAGT 59.459 37.037 0.00 0.00 34.52 2.66
823 2534 7.754027 TCTTATTACACTTGCTCTCGTAAAGTC 59.246 37.037 0.00 0.00 31.88 3.01
868 2617 8.268738 CACGTTCATATTCACATACACATGTAG 58.731 37.037 0.00 0.00 43.73 2.74
947 2706 0.950836 GGTATACGCATGCATGGCAA 59.049 50.000 27.34 11.17 43.62 4.52
948 2707 1.334960 GGTATACGCATGCATGGCAAC 60.335 52.381 27.34 10.17 43.62 4.17
970 2729 0.671781 GCCAGCAGTGTGTGTAGGAG 60.672 60.000 0.00 0.00 0.00 3.69
995 2754 2.353579 GTCCTTAATTTACGGCATGCGT 59.646 45.455 12.44 15.21 0.00 5.24
996 2755 3.556775 GTCCTTAATTTACGGCATGCGTA 59.443 43.478 12.44 14.18 0.00 4.42
997 2756 4.212636 GTCCTTAATTTACGGCATGCGTAT 59.787 41.667 18.47 7.52 0.00 3.06
998 2757 5.406175 GTCCTTAATTTACGGCATGCGTATA 59.594 40.000 18.47 15.28 0.00 1.47
1426 3186 2.357760 GCGTTGCCGAAGTACCCA 60.358 61.111 0.00 0.00 35.63 4.51
2325 4100 1.339727 TGACCGAGCTAGCTAGTGTGA 60.340 52.381 19.38 9.17 0.00 3.58
2457 4274 1.169034 TGGCATTTGCGCTGTACACA 61.169 50.000 9.73 0.00 43.26 3.72
2458 4275 0.039617 GGCATTTGCGCTGTACACAA 60.040 50.000 9.73 0.00 43.26 3.33
2459 4276 1.330306 GCATTTGCGCTGTACACAAG 58.670 50.000 9.73 0.00 0.00 3.16
2460 4277 1.069296 GCATTTGCGCTGTACACAAGA 60.069 47.619 9.73 0.00 0.00 3.02
2461 4278 2.414559 GCATTTGCGCTGTACACAAGAT 60.415 45.455 9.73 0.00 0.00 2.40
2462 4279 3.419915 CATTTGCGCTGTACACAAGATC 58.580 45.455 9.73 0.00 0.00 2.75
2507 4341 0.108329 ATGACTGGTAAAGACGGCCG 60.108 55.000 26.86 26.86 0.00 6.13
2508 4342 1.447314 GACTGGTAAAGACGGCCGG 60.447 63.158 31.76 11.88 34.92 6.13
2509 4343 2.125269 CTGGTAAAGACGGCCGGG 60.125 66.667 31.76 2.28 0.00 5.73
2510 4344 4.397832 TGGTAAAGACGGCCGGGC 62.398 66.667 31.76 20.04 0.00 6.13
2574 4667 2.723273 TGATTAGGCGTGTCTCTCTCA 58.277 47.619 0.00 0.00 0.00 3.27
2578 4671 0.037590 AGGCGTGTCTCTCTCACTCT 59.962 55.000 0.00 0.00 34.14 3.24
2580 4673 0.450184 GCGTGTCTCTCTCACTCTCC 59.550 60.000 0.00 0.00 34.14 3.71
2584 4677 0.732571 GTCTCTCTCACTCTCCTGCG 59.267 60.000 0.00 0.00 0.00 5.18
2621 4714 0.311165 AAGACGACGACTGGACACTG 59.689 55.000 0.00 0.00 0.00 3.66
2643 4736 3.315418 GAGAGTACACACGTTTTCTCCC 58.685 50.000 0.00 0.00 31.87 4.30
2654 4747 1.271656 GTTTTCTCCCGACTTCTCCGA 59.728 52.381 0.00 0.00 0.00 4.55
2658 4751 0.677098 CTCCCGACTTCTCCGACAGA 60.677 60.000 0.00 0.00 0.00 3.41
2682 4775 3.727079 CGCACTTTCTACATCGTCGTAGT 60.727 47.826 11.83 0.00 39.92 2.73
2684 4777 4.727655 GCACTTTCTACATCGTCGTAGTAC 59.272 45.833 11.83 0.00 39.92 2.73
2686 4779 5.731723 CACTTTCTACATCGTCGTAGTACAC 59.268 44.000 11.83 0.00 39.92 2.90
2701 4794 6.774354 GTAGTACACGGAATTCAAAGTTCA 57.226 37.500 7.93 0.00 0.00 3.18
2724 4817 6.508561 TCATGGAATTAATGGGGGATATCAGA 59.491 38.462 4.83 0.00 0.00 3.27
2769 5046 2.367567 AGTTTACGGCAGAGGACTGAAA 59.632 45.455 0.00 0.00 46.03 2.69
2813 5090 1.308783 TTGCACAACGGTGTTGCTCA 61.309 50.000 22.44 9.31 46.95 4.26
2833 5110 0.096976 CGCGGAGATTCGTGCAAATT 59.903 50.000 0.00 0.00 33.89 1.82
2836 5113 2.986479 GCGGAGATTCGTGCAAATTTTT 59.014 40.909 0.00 0.00 0.00 1.94
2843 5120 7.793888 GGAGATTCGTGCAAATTTTTCTTTTTC 59.206 33.333 0.00 0.00 0.00 2.29
2900 5178 5.060506 TCGCTTGATTGAGACTTGGTTAAA 58.939 37.500 0.00 0.00 0.00 1.52
2917 5195 7.922505 TGGTTAAAATTTGTGTCAAGATTCG 57.077 32.000 0.00 0.00 0.00 3.34
2929 5207 1.656095 CAAGATTCGCTCAGTTCGGTC 59.344 52.381 0.00 0.00 0.00 4.79
2960 5238 3.594603 ACGATTCTGAAACGATGACCT 57.405 42.857 23.80 0.49 0.00 3.85
2961 5239 3.254060 ACGATTCTGAAACGATGACCTG 58.746 45.455 23.80 0.00 0.00 4.00
2962 5240 2.604914 CGATTCTGAAACGATGACCTGG 59.395 50.000 13.89 0.00 0.00 4.45
2963 5241 1.808411 TTCTGAAACGATGACCTGGC 58.192 50.000 0.00 0.00 0.00 4.85
2964 5242 0.684535 TCTGAAACGATGACCTGGCA 59.315 50.000 0.00 0.00 0.00 4.92
2965 5243 1.081892 CTGAAACGATGACCTGGCAG 58.918 55.000 7.75 7.75 0.00 4.85
2966 5244 0.321564 TGAAACGATGACCTGGCAGG 60.322 55.000 31.62 31.62 42.49 4.85
3018 5296 4.445052 CGCCGTCCGTGAAAATATGTTATA 59.555 41.667 0.00 0.00 0.00 0.98
3023 5301 6.352526 GTCCGTGAAAATATGTTATAGCGTG 58.647 40.000 0.00 0.00 0.00 5.34
3024 5302 6.019318 GTCCGTGAAAATATGTTATAGCGTGT 60.019 38.462 0.00 0.00 0.00 4.49
3025 5303 6.535865 TCCGTGAAAATATGTTATAGCGTGTT 59.464 34.615 0.00 0.00 0.00 3.32
3026 5304 7.705752 TCCGTGAAAATATGTTATAGCGTGTTA 59.294 33.333 0.00 0.00 0.00 2.41
3027 5305 8.492748 CCGTGAAAATATGTTATAGCGTGTTAT 58.507 33.333 0.00 0.00 0.00 1.89
3028 5306 9.858247 CGTGAAAATATGTTATAGCGTGTTATT 57.142 29.630 0.00 0.00 0.00 1.40
3033 5311 8.975410 AATATGTTATAGCGTGTTATTAGCGA 57.025 30.769 0.00 0.00 35.78 4.93
3034 5312 6.929587 ATGTTATAGCGTGTTATTAGCGAG 57.070 37.500 0.00 0.00 35.78 5.03
3035 5313 6.063640 TGTTATAGCGTGTTATTAGCGAGA 57.936 37.500 0.00 0.00 35.78 4.04
3036 5314 5.911280 TGTTATAGCGTGTTATTAGCGAGAC 59.089 40.000 0.00 0.00 35.78 3.36
3037 5315 2.933495 AGCGTGTTATTAGCGAGACA 57.067 45.000 0.00 0.00 35.78 3.41
3038 5316 3.438297 AGCGTGTTATTAGCGAGACAT 57.562 42.857 0.00 0.00 35.78 3.06
3039 5317 3.782046 AGCGTGTTATTAGCGAGACATT 58.218 40.909 0.00 0.00 35.78 2.71
3040 5318 3.551890 AGCGTGTTATTAGCGAGACATTG 59.448 43.478 0.00 0.00 35.78 2.82
3041 5319 3.306166 GCGTGTTATTAGCGAGACATTGT 59.694 43.478 0.00 0.00 0.00 2.71
3042 5320 4.501559 GCGTGTTATTAGCGAGACATTGTA 59.498 41.667 0.00 0.00 0.00 2.41
3043 5321 5.553952 GCGTGTTATTAGCGAGACATTGTAC 60.554 44.000 0.00 0.00 0.00 2.90
3044 5322 5.513849 CGTGTTATTAGCGAGACATTGTACA 59.486 40.000 0.00 0.00 0.00 2.90
3045 5323 6.505888 CGTGTTATTAGCGAGACATTGTACAC 60.506 42.308 0.00 0.00 0.00 2.90
3046 5324 5.808540 TGTTATTAGCGAGACATTGTACACC 59.191 40.000 0.00 0.00 0.00 4.16
3047 5325 2.554806 TAGCGAGACATTGTACACCG 57.445 50.000 0.00 0.00 0.00 4.94
3048 5326 0.736325 AGCGAGACATTGTACACCGC 60.736 55.000 0.00 13.20 41.22 5.68
3049 5327 0.736325 GCGAGACATTGTACACCGCT 60.736 55.000 0.00 0.00 38.36 5.52
3050 5328 1.269166 CGAGACATTGTACACCGCTC 58.731 55.000 0.00 0.00 0.00 5.03
3051 5329 1.402325 CGAGACATTGTACACCGCTCA 60.402 52.381 0.00 0.00 0.00 4.26
3052 5330 2.683968 GAGACATTGTACACCGCTCAA 58.316 47.619 0.00 0.00 0.00 3.02
3053 5331 3.262420 GAGACATTGTACACCGCTCAAT 58.738 45.455 0.00 0.00 32.93 2.57
3054 5332 3.262420 AGACATTGTACACCGCTCAATC 58.738 45.455 0.00 0.00 30.74 2.67
3055 5333 3.055819 AGACATTGTACACCGCTCAATCT 60.056 43.478 0.00 0.00 30.74 2.40
3056 5334 4.159693 AGACATTGTACACCGCTCAATCTA 59.840 41.667 0.00 0.00 30.74 1.98
3057 5335 4.433615 ACATTGTACACCGCTCAATCTAG 58.566 43.478 0.00 0.00 30.74 2.43
3058 5336 4.159693 ACATTGTACACCGCTCAATCTAGA 59.840 41.667 0.00 0.00 30.74 2.43
3059 5337 4.371855 TTGTACACCGCTCAATCTAGAG 57.628 45.455 0.00 0.00 38.68 2.43
3060 5338 3.617284 TGTACACCGCTCAATCTAGAGA 58.383 45.455 0.00 0.00 37.87 3.10
3061 5339 3.628032 TGTACACCGCTCAATCTAGAGAG 59.372 47.826 0.00 1.44 37.87 3.20
3062 5340 3.006112 ACACCGCTCAATCTAGAGAGA 57.994 47.619 12.08 5.20 37.60 3.10
3063 5341 2.685897 ACACCGCTCAATCTAGAGAGAC 59.314 50.000 12.08 4.12 37.60 3.36
3064 5342 2.685388 CACCGCTCAATCTAGAGAGACA 59.315 50.000 12.08 0.00 37.60 3.41
3065 5343 3.129462 CACCGCTCAATCTAGAGAGACAA 59.871 47.826 12.08 0.00 37.60 3.18
3066 5344 3.957497 ACCGCTCAATCTAGAGAGACAAT 59.043 43.478 12.08 0.00 37.60 2.71
3067 5345 4.404073 ACCGCTCAATCTAGAGAGACAATT 59.596 41.667 12.08 0.00 37.60 2.32
3068 5346 5.594725 ACCGCTCAATCTAGAGAGACAATTA 59.405 40.000 12.08 0.00 37.60 1.40
3069 5347 6.266558 ACCGCTCAATCTAGAGAGACAATTAT 59.733 38.462 12.08 0.00 37.60 1.28
3070 5348 6.806249 CCGCTCAATCTAGAGAGACAATTATC 59.194 42.308 12.08 0.00 37.60 1.75
3071 5349 7.309133 CCGCTCAATCTAGAGAGACAATTATCT 60.309 40.741 12.08 0.00 37.60 1.98
3072 5350 8.726068 CGCTCAATCTAGAGAGACAATTATCTA 58.274 37.037 12.08 0.00 37.60 1.98
3073 5351 9.840427 GCTCAATCTAGAGAGACAATTATCTAC 57.160 37.037 12.08 0.00 37.87 2.59
3076 5354 9.605955 CAATCTAGAGAGACAATTATCTACACG 57.394 37.037 0.00 0.00 33.41 4.49
3077 5355 7.192148 TCTAGAGAGACAATTATCTACACGC 57.808 40.000 0.00 0.00 0.00 5.34
3078 5356 6.993308 TCTAGAGAGACAATTATCTACACGCT 59.007 38.462 0.00 0.00 0.00 5.07
3079 5357 8.148999 TCTAGAGAGACAATTATCTACACGCTA 58.851 37.037 0.00 0.00 0.00 4.26
3080 5358 7.569639 AGAGAGACAATTATCTACACGCTAA 57.430 36.000 0.00 0.00 0.00 3.09
3081 5359 7.997482 AGAGAGACAATTATCTACACGCTAAA 58.003 34.615 0.00 0.00 0.00 1.85
3082 5360 8.467598 AGAGAGACAATTATCTACACGCTAAAA 58.532 33.333 0.00 0.00 0.00 1.52
3083 5361 8.408743 AGAGACAATTATCTACACGCTAAAAC 57.591 34.615 0.00 0.00 0.00 2.43
3084 5362 8.251721 AGAGACAATTATCTACACGCTAAAACT 58.748 33.333 0.00 0.00 0.00 2.66
3085 5363 9.512435 GAGACAATTATCTACACGCTAAAACTA 57.488 33.333 0.00 0.00 0.00 2.24
3091 5369 8.792831 TTATCTACACGCTAAAACTATAGTGC 57.207 34.615 6.06 4.51 36.99 4.40
3092 5370 5.585390 TCTACACGCTAAAACTATAGTGCC 58.415 41.667 6.06 0.00 36.99 5.01
3093 5371 3.528532 ACACGCTAAAACTATAGTGCCC 58.471 45.455 6.06 0.00 36.99 5.36
3094 5372 2.538449 CACGCTAAAACTATAGTGCCCG 59.462 50.000 6.06 7.93 36.99 6.13
3095 5373 2.428171 ACGCTAAAACTATAGTGCCCGA 59.572 45.455 6.06 0.00 36.99 5.14
3096 5374 3.069158 ACGCTAAAACTATAGTGCCCGAT 59.931 43.478 6.06 0.00 36.99 4.18
3097 5375 3.673809 CGCTAAAACTATAGTGCCCGATC 59.326 47.826 6.06 0.00 0.00 3.69
3098 5376 4.558898 CGCTAAAACTATAGTGCCCGATCT 60.559 45.833 6.06 0.00 0.00 2.75
3099 5377 5.298347 GCTAAAACTATAGTGCCCGATCTT 58.702 41.667 6.06 0.00 0.00 2.40
3100 5378 5.758784 GCTAAAACTATAGTGCCCGATCTTT 59.241 40.000 6.06 3.39 0.00 2.52
3101 5379 6.260271 GCTAAAACTATAGTGCCCGATCTTTT 59.740 38.462 6.06 2.69 0.00 2.27
3102 5380 6.679327 AAAACTATAGTGCCCGATCTTTTC 57.321 37.500 6.06 0.00 0.00 2.29
3103 5381 5.615925 AACTATAGTGCCCGATCTTTTCT 57.384 39.130 6.06 0.00 0.00 2.52
3104 5382 6.726490 AACTATAGTGCCCGATCTTTTCTA 57.274 37.500 6.06 0.00 0.00 2.10
3105 5383 6.919775 ACTATAGTGCCCGATCTTTTCTAT 57.080 37.500 4.10 0.00 0.00 1.98
3106 5384 6.926313 ACTATAGTGCCCGATCTTTTCTATC 58.074 40.000 4.10 0.00 0.00 2.08
3107 5385 6.722129 ACTATAGTGCCCGATCTTTTCTATCT 59.278 38.462 4.10 0.00 0.00 1.98
3108 5386 4.329462 AGTGCCCGATCTTTTCTATCTC 57.671 45.455 0.00 0.00 0.00 2.75
3109 5387 3.070302 AGTGCCCGATCTTTTCTATCTCC 59.930 47.826 0.00 0.00 0.00 3.71
3110 5388 2.035961 TGCCCGATCTTTTCTATCTCCG 59.964 50.000 0.00 0.00 0.00 4.63
3111 5389 2.036089 GCCCGATCTTTTCTATCTCCGT 59.964 50.000 0.00 0.00 0.00 4.69
3112 5390 3.857756 GCCCGATCTTTTCTATCTCCGTC 60.858 52.174 0.00 0.00 0.00 4.79
3113 5391 3.570550 CCCGATCTTTTCTATCTCCGTCT 59.429 47.826 0.00 0.00 0.00 4.18
3114 5392 4.760715 CCCGATCTTTTCTATCTCCGTCTA 59.239 45.833 0.00 0.00 0.00 2.59
3115 5393 5.335035 CCCGATCTTTTCTATCTCCGTCTAC 60.335 48.000 0.00 0.00 0.00 2.59
3116 5394 5.335035 CCGATCTTTTCTATCTCCGTCTACC 60.335 48.000 0.00 0.00 0.00 3.18
3117 5395 5.470777 CGATCTTTTCTATCTCCGTCTACCT 59.529 44.000 0.00 0.00 0.00 3.08
3118 5396 6.016943 CGATCTTTTCTATCTCCGTCTACCTT 60.017 42.308 0.00 0.00 0.00 3.50
3119 5397 7.468906 CGATCTTTTCTATCTCCGTCTACCTTT 60.469 40.741 0.00 0.00 0.00 3.11
3120 5398 7.477945 TCTTTTCTATCTCCGTCTACCTTTT 57.522 36.000 0.00 0.00 0.00 2.27
3121 5399 7.321153 TCTTTTCTATCTCCGTCTACCTTTTG 58.679 38.462 0.00 0.00 0.00 2.44
3123 5401 2.693267 ATCTCCGTCTACCTTTTGGC 57.307 50.000 0.00 0.00 45.59 4.52
3124 5402 0.611714 TCTCCGTCTACCTTTTGGCC 59.388 55.000 0.00 0.00 45.59 5.36
3125 5403 0.739813 CTCCGTCTACCTTTTGGCCG 60.740 60.000 0.00 0.00 45.59 6.13
3126 5404 1.004200 CCGTCTACCTTTTGGCCGT 60.004 57.895 0.00 0.00 45.59 5.68
3127 5405 0.247185 CCGTCTACCTTTTGGCCGTA 59.753 55.000 0.00 0.00 45.59 4.02
3128 5406 1.134610 CCGTCTACCTTTTGGCCGTAT 60.135 52.381 0.00 0.00 45.59 3.06
3129 5407 2.624636 CGTCTACCTTTTGGCCGTATT 58.375 47.619 0.00 0.00 45.59 1.89
3130 5408 2.350498 CGTCTACCTTTTGGCCGTATTG 59.650 50.000 0.00 0.00 45.59 1.90
3131 5409 2.096980 GTCTACCTTTTGGCCGTATTGC 59.903 50.000 0.00 0.00 45.59 3.56
3132 5410 2.088423 CTACCTTTTGGCCGTATTGCA 58.912 47.619 0.00 0.00 45.59 4.08
3133 5411 1.333177 ACCTTTTGGCCGTATTGCAA 58.667 45.000 0.00 0.00 45.59 4.08
3134 5412 1.899142 ACCTTTTGGCCGTATTGCAAT 59.101 42.857 17.56 17.56 45.59 3.56
3135 5413 2.301583 ACCTTTTGGCCGTATTGCAATT 59.698 40.909 18.75 1.81 45.59 2.32
3136 5414 3.244387 ACCTTTTGGCCGTATTGCAATTT 60.244 39.130 18.75 0.00 45.59 1.82
3137 5415 3.370672 CCTTTTGGCCGTATTGCAATTTC 59.629 43.478 18.75 10.39 0.00 2.17
3138 5416 3.667497 TTTGGCCGTATTGCAATTTCA 57.333 38.095 18.75 6.52 0.00 2.69
3139 5417 3.883830 TTGGCCGTATTGCAATTTCAT 57.116 38.095 18.75 0.00 0.00 2.57
3140 5418 3.883830 TGGCCGTATTGCAATTTCATT 57.116 38.095 18.75 0.00 0.00 2.57
3141 5419 4.199432 TGGCCGTATTGCAATTTCATTT 57.801 36.364 18.75 0.00 0.00 2.32
3142 5420 4.573900 TGGCCGTATTGCAATTTCATTTT 58.426 34.783 18.75 0.00 0.00 1.82
3143 5421 5.724328 TGGCCGTATTGCAATTTCATTTTA 58.276 33.333 18.75 0.00 0.00 1.52
3144 5422 6.344500 TGGCCGTATTGCAATTTCATTTTAT 58.656 32.000 18.75 0.00 0.00 1.40
3145 5423 6.478344 TGGCCGTATTGCAATTTCATTTTATC 59.522 34.615 18.75 0.00 0.00 1.75
3146 5424 6.478344 GGCCGTATTGCAATTTCATTTTATCA 59.522 34.615 18.75 0.00 0.00 2.15
3147 5425 7.171337 GGCCGTATTGCAATTTCATTTTATCAT 59.829 33.333 18.75 0.00 0.00 2.45
3148 5426 8.005466 GCCGTATTGCAATTTCATTTTATCATG 58.995 33.333 18.75 0.03 0.00 3.07
3149 5427 8.489559 CCGTATTGCAATTTCATTTTATCATGG 58.510 33.333 18.75 5.80 0.00 3.66
3150 5428 8.005466 CGTATTGCAATTTCATTTTATCATGGC 58.995 33.333 18.75 0.00 0.00 4.40
3151 5429 9.048446 GTATTGCAATTTCATTTTATCATGGCT 57.952 29.630 18.75 0.00 0.00 4.75
3152 5430 7.925043 TTGCAATTTCATTTTATCATGGCTT 57.075 28.000 0.00 0.00 0.00 4.35
3153 5431 7.310072 TGCAATTTCATTTTATCATGGCTTG 57.690 32.000 0.00 0.00 0.00 4.01
3154 5432 7.104290 TGCAATTTCATTTTATCATGGCTTGA 58.896 30.769 5.47 5.47 39.12 3.02
3155 5433 7.279090 TGCAATTTCATTTTATCATGGCTTGAG 59.721 33.333 9.09 0.00 37.89 3.02
3156 5434 7.493320 GCAATTTCATTTTATCATGGCTTGAGA 59.507 33.333 9.09 1.29 37.89 3.27
3157 5435 8.814235 CAATTTCATTTTATCATGGCTTGAGAC 58.186 33.333 9.09 0.00 37.89 3.36
3158 5436 6.455360 TTCATTTTATCATGGCTTGAGACC 57.545 37.500 9.09 0.00 37.89 3.85
3159 5437 5.508567 TCATTTTATCATGGCTTGAGACCA 58.491 37.500 9.09 0.00 42.61 4.02
3160 5438 5.591472 TCATTTTATCATGGCTTGAGACCAG 59.409 40.000 9.09 0.00 41.46 4.00
3161 5439 4.574674 TTTATCATGGCTTGAGACCAGT 57.425 40.909 9.09 0.00 41.46 4.00
3162 5440 2.414994 ATCATGGCTTGAGACCAGTG 57.585 50.000 9.09 0.00 41.46 3.66
3163 5441 0.325933 TCATGGCTTGAGACCAGTGG 59.674 55.000 7.91 7.91 41.46 4.00
3164 5442 1.001641 ATGGCTTGAGACCAGTGGC 60.002 57.895 9.78 1.85 41.46 5.01
3165 5443 2.743928 GGCTTGAGACCAGTGGCG 60.744 66.667 9.78 0.00 0.00 5.69
3166 5444 2.031163 GCTTGAGACCAGTGGCGT 59.969 61.111 9.78 0.00 0.00 5.68
3167 5445 1.292223 GCTTGAGACCAGTGGCGTA 59.708 57.895 9.78 0.00 0.00 4.42
3168 5446 0.737715 GCTTGAGACCAGTGGCGTAG 60.738 60.000 9.78 1.05 0.00 3.51
3182 5460 2.311294 CGTAGCTAGCCCAACATGC 58.689 57.895 12.13 0.00 0.00 4.06
3183 5461 1.160329 CGTAGCTAGCCCAACATGCC 61.160 60.000 12.13 0.00 0.00 4.40
3184 5462 0.107214 GTAGCTAGCCCAACATGCCA 60.107 55.000 12.13 0.00 0.00 4.92
3185 5463 0.181114 TAGCTAGCCCAACATGCCAG 59.819 55.000 12.13 0.00 0.00 4.85
3186 5464 2.123428 GCTAGCCCAACATGCCAGG 61.123 63.158 2.29 0.00 0.00 4.45
3187 5465 1.454479 CTAGCCCAACATGCCAGGG 60.454 63.158 12.20 12.20 45.68 4.45
3188 5466 2.215451 CTAGCCCAACATGCCAGGGT 62.215 60.000 16.46 11.28 44.69 4.34
3189 5467 2.497792 TAGCCCAACATGCCAGGGTG 62.498 60.000 16.46 0.00 44.69 4.61
3190 5468 2.681064 CCCAACATGCCAGGGTGG 60.681 66.667 6.42 6.42 41.55 4.61
3191 5469 2.118076 CCAACATGCCAGGGTGGT 59.882 61.111 4.99 0.00 40.46 4.16
3192 5470 1.978617 CCAACATGCCAGGGTGGTC 60.979 63.158 4.99 0.00 40.46 4.02
3193 5471 1.978617 CAACATGCCAGGGTGGTCC 60.979 63.158 0.00 0.00 40.46 4.46
3194 5472 2.468868 AACATGCCAGGGTGGTCCA 61.469 57.895 0.00 0.00 40.46 4.02
3195 5473 2.361610 CATGCCAGGGTGGTCCAC 60.362 66.667 14.13 14.13 40.46 4.02
3210 5488 5.083533 TGGTCCACCAATGCAAAATATTC 57.916 39.130 0.00 0.00 44.35 1.75
3211 5489 4.529769 TGGTCCACCAATGCAAAATATTCA 59.470 37.500 0.00 0.00 44.35 2.57
3212 5490 4.869861 GGTCCACCAATGCAAAATATTCAC 59.130 41.667 0.00 0.00 35.64 3.18
3213 5491 5.477510 GTCCACCAATGCAAAATATTCACA 58.522 37.500 0.00 0.00 0.00 3.58
3214 5492 6.108015 GTCCACCAATGCAAAATATTCACAT 58.892 36.000 0.00 0.00 0.00 3.21
3215 5493 7.264221 GTCCACCAATGCAAAATATTCACATA 58.736 34.615 0.00 0.00 0.00 2.29
3216 5494 7.763528 GTCCACCAATGCAAAATATTCACATAA 59.236 33.333 0.00 0.00 0.00 1.90
3217 5495 8.316946 TCCACCAATGCAAAATATTCACATAAA 58.683 29.630 0.00 0.00 0.00 1.40
3218 5496 9.111613 CCACCAATGCAAAATATTCACATAAAT 57.888 29.630 0.00 0.00 0.00 1.40
3279 5557 9.067963 TGCTATATAGATTATGGGGAAATTCCA 57.932 33.333 14.68 0.00 38.64 3.53
3280 5558 9.566432 GCTATATAGATTATGGGGAAATTCCAG 57.434 37.037 14.68 0.00 38.64 3.86
3282 5560 4.475919 AGATTATGGGGAAATTCCAGGG 57.524 45.455 14.68 0.00 38.64 4.45
3283 5561 3.799578 AGATTATGGGGAAATTCCAGGGT 59.200 43.478 14.68 0.00 38.64 4.34
3284 5562 3.396685 TTATGGGGAAATTCCAGGGTG 57.603 47.619 14.68 0.00 38.64 4.61
3285 5563 0.339510 ATGGGGAAATTCCAGGGTGG 59.660 55.000 14.68 0.00 38.64 4.61
3286 5564 1.077298 TGGGGAAATTCCAGGGTGGT 61.077 55.000 14.68 0.00 38.64 4.16
3287 5565 0.324368 GGGGAAATTCCAGGGTGGTC 60.324 60.000 14.68 0.00 38.64 4.02
3288 5566 0.324368 GGGAAATTCCAGGGTGGTCC 60.324 60.000 14.68 0.00 38.64 4.46
3289 5567 0.407918 GGAAATTCCAGGGTGGTCCA 59.592 55.000 7.23 0.00 39.03 4.02
3290 5568 1.007118 GGAAATTCCAGGGTGGTCCAT 59.993 52.381 7.23 0.00 39.03 3.41
3291 5569 2.102578 GAAATTCCAGGGTGGTCCATG 58.897 52.381 0.00 0.00 44.12 3.66
3302 5580 3.495729 GTCCATGGACCACCCTGT 58.504 61.111 31.37 0.00 39.08 4.00
3303 5581 1.299976 GTCCATGGACCACCCTGTC 59.700 63.158 31.37 5.53 39.08 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.616942 TCATGTTATTGAAAGAAAACTTGTCGA 58.383 29.630 0.00 0.00 32.12 4.20
1 2 8.682016 GTCATGTTATTGAAAGAAAACTTGTCG 58.318 33.333 0.00 0.00 32.12 4.35
2 3 8.682016 CGTCATGTTATTGAAAGAAAACTTGTC 58.318 33.333 0.00 0.00 32.12 3.18
4 5 7.167302 TGCGTCATGTTATTGAAAGAAAACTTG 59.833 33.333 0.00 0.00 0.00 3.16
5 6 7.199766 TGCGTCATGTTATTGAAAGAAAACTT 58.800 30.769 0.00 0.00 0.00 2.66
6 7 6.734137 TGCGTCATGTTATTGAAAGAAAACT 58.266 32.000 0.00 0.00 0.00 2.66
7 8 6.984740 TGCGTCATGTTATTGAAAGAAAAC 57.015 33.333 0.00 0.00 0.00 2.43
12 13 4.413969 TGCATGCGTCATGTTATTGAAAG 58.586 39.130 14.09 0.00 43.10 2.62
100 101 3.236896 ACTTCTTCGGAAAGGACCTGTA 58.763 45.455 0.00 0.00 33.12 2.74
137 138 7.678947 ATACAACAAGGAGATTTTCTGTCAG 57.321 36.000 0.00 0.00 0.00 3.51
158 160 4.698780 GGTGTTTACCTGGTTGGAGAATAC 59.301 45.833 3.84 1.94 43.97 1.89
162 164 2.943036 GGTGTTTACCTGGTTGGAGA 57.057 50.000 3.84 0.00 43.97 3.71
192 194 0.820871 GAGGCTCGAGGACATGACTT 59.179 55.000 15.58 0.00 0.00 3.01
193 195 1.040339 GGAGGCTCGAGGACATGACT 61.040 60.000 15.58 0.00 0.00 3.41
205 207 1.050988 TGCCTATCCTGTGGAGGCTC 61.051 60.000 5.78 5.78 41.74 4.70
219 221 2.243478 TGCTGGTCCCATAAATTGCCTA 59.757 45.455 0.00 0.00 0.00 3.93
220 222 1.006998 TGCTGGTCCCATAAATTGCCT 59.993 47.619 0.00 0.00 0.00 4.75
221 223 1.484038 TGCTGGTCCCATAAATTGCC 58.516 50.000 0.00 0.00 0.00 4.52
222 224 5.476599 TGTATATGCTGGTCCCATAAATTGC 59.523 40.000 0.00 0.00 0.00 3.56
223 225 6.489700 TGTGTATATGCTGGTCCCATAAATTG 59.510 38.462 0.00 0.00 0.00 2.32
262 264 9.807921 AGGTTATTCATCTGTCCTTTTCTAAAA 57.192 29.630 0.00 0.00 0.00 1.52
263 265 9.807921 AAGGTTATTCATCTGTCCTTTTCTAAA 57.192 29.630 0.00 0.00 32.31 1.85
264 266 9.807921 AAAGGTTATTCATCTGTCCTTTTCTAA 57.192 29.630 0.00 0.00 40.79 2.10
265 267 9.807921 AAAAGGTTATTCATCTGTCCTTTTCTA 57.192 29.630 12.12 0.00 45.81 2.10
266 268 8.712228 AAAAGGTTATTCATCTGTCCTTTTCT 57.288 30.769 12.12 0.00 45.81 2.52
292 294 9.567776 TCATGTTATTCTGTGTCCTTTTCTAAA 57.432 29.630 0.00 0.00 0.00 1.85
293 295 9.219603 CTCATGTTATTCTGTGTCCTTTTCTAA 57.780 33.333 0.00 0.00 0.00 2.10
294 296 8.593679 TCTCATGTTATTCTGTGTCCTTTTCTA 58.406 33.333 0.00 0.00 0.00 2.10
295 297 7.453393 TCTCATGTTATTCTGTGTCCTTTTCT 58.547 34.615 0.00 0.00 0.00 2.52
296 298 7.604164 TCTCTCATGTTATTCTGTGTCCTTTTC 59.396 37.037 0.00 0.00 0.00 2.29
297 299 7.453393 TCTCTCATGTTATTCTGTGTCCTTTT 58.547 34.615 0.00 0.00 0.00 2.27
298 300 7.009179 TCTCTCATGTTATTCTGTGTCCTTT 57.991 36.000 0.00 0.00 0.00 3.11
299 301 6.611613 TCTCTCATGTTATTCTGTGTCCTT 57.388 37.500 0.00 0.00 0.00 3.36
300 302 6.611613 TTCTCTCATGTTATTCTGTGTCCT 57.388 37.500 0.00 0.00 0.00 3.85
301 303 7.044181 TCATTCTCTCATGTTATTCTGTGTCC 58.956 38.462 0.00 0.00 0.00 4.02
302 304 8.484641 TTCATTCTCTCATGTTATTCTGTGTC 57.515 34.615 0.00 0.00 0.00 3.67
303 305 8.725148 GTTTCATTCTCTCATGTTATTCTGTGT 58.275 33.333 0.00 0.00 0.00 3.72
304 306 8.724229 TGTTTCATTCTCTCATGTTATTCTGTG 58.276 33.333 0.00 0.00 0.00 3.66
305 307 8.853077 TGTTTCATTCTCTCATGTTATTCTGT 57.147 30.769 0.00 0.00 0.00 3.41
313 315 9.778993 CGAAAATAATGTTTCATTCTCTCATGT 57.221 29.630 0.00 0.00 37.35 3.21
314 316 9.778993 ACGAAAATAATGTTTCATTCTCTCATG 57.221 29.630 0.00 0.00 37.35 3.07
333 335 5.721876 TGTCGACACTGTTTAACGAAAAT 57.278 34.783 15.76 0.00 34.91 1.82
340 342 4.940463 AGCTACTTGTCGACACTGTTTAA 58.060 39.130 19.90 0.00 0.00 1.52
372 396 4.514781 TCATGATATACGTACTGTGCCC 57.485 45.455 0.00 0.00 0.00 5.36
379 403 5.455849 GTCGGCATCATCATGATATACGTAC 59.544 44.000 8.15 6.22 34.28 3.67
380 404 5.578776 GTCGGCATCATCATGATATACGTA 58.421 41.667 8.15 0.00 34.28 3.57
425 449 2.124507 AAAGCCTAGGCAACCTGCGA 62.125 55.000 34.70 0.00 46.21 5.10
433 457 1.031571 CCGCATGAAAAGCCTAGGCA 61.032 55.000 34.70 15.08 44.88 4.75
437 461 0.463654 ATCGCCGCATGAAAAGCCTA 60.464 50.000 0.00 0.00 0.00 3.93
473 497 2.093500 TGTCCTCCTCACCAAATCGATG 60.093 50.000 0.00 0.00 0.00 3.84
491 515 2.852075 TGGGGTGGAGTGGGTGTC 60.852 66.667 0.00 0.00 0.00 3.67
506 530 2.983592 GGGTTGGCAACGGAGTGG 60.984 66.667 22.95 0.00 45.00 4.00
507 531 2.983592 GGGGTTGGCAACGGAGTG 60.984 66.667 22.95 0.00 45.00 3.51
509 533 3.920093 GAGGGGGTTGGCAACGGAG 62.920 68.421 22.95 0.00 42.51 4.63
538 562 4.790962 ATGCACCGGCCAGCTCAG 62.791 66.667 14.19 0.00 40.13 3.35
543 567 4.201679 CATGCATGCACCGGCCAG 62.202 66.667 25.37 3.26 40.13 4.85
554 578 1.458588 TGGGCCATCATGCATGCAT 60.459 52.632 27.46 27.46 37.08 3.96
592 627 1.015868 TGTGGCATCATGCGTATGTG 58.984 50.000 13.39 11.52 46.21 3.21
593 628 1.016627 GTGTGGCATCATGCGTATGT 58.983 50.000 13.39 0.00 46.21 2.29
596 631 1.813337 CGGTGTGGCATCATGCGTA 60.813 57.895 2.82 0.00 46.21 4.42
646 2227 2.417719 ACTTTGAGATCTGGACGTTGC 58.582 47.619 0.00 0.00 0.00 4.17
661 2243 4.143389 CCTTTTACACGTCGCTCTACTTTG 60.143 45.833 0.00 0.00 0.00 2.77
760 2467 1.670811 GTTGGGCATGTGTAATCTCGG 59.329 52.381 0.00 0.00 0.00 4.63
794 2505 5.403246 ACGAGAGCAAGTGTAATAAGACTG 58.597 41.667 0.00 0.00 0.00 3.51
813 2524 3.766151 TGCCATCTTACGACTTTACGAG 58.234 45.455 0.00 0.00 37.03 4.18
814 2525 3.766151 CTGCCATCTTACGACTTTACGA 58.234 45.455 0.00 0.00 37.03 3.43
816 2527 3.259064 TGCTGCCATCTTACGACTTTAC 58.741 45.455 0.00 0.00 0.00 2.01
818 2529 2.472695 TGCTGCCATCTTACGACTTT 57.527 45.000 0.00 0.00 0.00 2.66
819 2530 2.555199 GATGCTGCCATCTTACGACTT 58.445 47.619 0.00 0.00 43.62 3.01
820 2531 1.202580 GGATGCTGCCATCTTACGACT 60.203 52.381 0.00 0.00 45.73 4.18
821 2532 1.221414 GGATGCTGCCATCTTACGAC 58.779 55.000 0.00 0.00 45.73 4.34
822 2533 0.829990 TGGATGCTGCCATCTTACGA 59.170 50.000 0.00 0.00 45.73 3.43
823 2534 0.940126 GTGGATGCTGCCATCTTACG 59.060 55.000 0.00 0.00 45.73 3.18
831 2542 1.308069 ATGAACGTGTGGATGCTGCC 61.308 55.000 0.00 0.00 0.00 4.85
839 2550 5.350091 TGTGTATGTGAATATGAACGTGTGG 59.650 40.000 0.00 0.00 0.00 4.17
872 2621 9.654663 AATTTGCTCTTCGTTAATTACTACTCT 57.345 29.630 0.00 0.00 0.00 3.24
947 2706 1.695114 TACACACACTGCTGGCCTGT 61.695 55.000 11.69 0.00 0.00 4.00
948 2707 0.952497 CTACACACACTGCTGGCCTG 60.952 60.000 3.32 4.26 0.00 4.85
949 2708 1.372683 CTACACACACTGCTGGCCT 59.627 57.895 3.32 0.00 0.00 5.19
951 2710 0.671781 CTCCTACACACACTGCTGGC 60.672 60.000 0.00 0.00 0.00 4.85
952 2711 0.681733 ACTCCTACACACACTGCTGG 59.318 55.000 0.00 0.00 0.00 4.85
953 2712 2.668556 CGTACTCCTACACACACTGCTG 60.669 54.545 0.00 0.00 0.00 4.41
954 2713 1.540267 CGTACTCCTACACACACTGCT 59.460 52.381 0.00 0.00 0.00 4.24
970 2729 4.551410 GCATGCCGTAAATTAAGGACGTAC 60.551 45.833 6.36 0.00 34.81 3.67
995 2754 3.312697 CGCCTCGAGCTGTAGCATATATA 59.687 47.826 6.99 0.00 45.16 0.86
996 2755 2.098280 CGCCTCGAGCTGTAGCATATAT 59.902 50.000 6.99 0.00 45.16 0.86
997 2756 1.468914 CGCCTCGAGCTGTAGCATATA 59.531 52.381 6.99 0.00 45.16 0.86
998 2757 0.242286 CGCCTCGAGCTGTAGCATAT 59.758 55.000 6.99 0.00 45.16 1.78
1200 2960 2.237542 ATCAGCTGGATGGGCATGA 58.762 52.632 15.13 0.00 34.06 3.07
1252 3012 2.100631 GGACACGATGAACCTGCCG 61.101 63.158 0.00 0.00 0.00 5.69
2136 3908 4.083862 GCGACCCGGGCTTCTTCT 62.084 66.667 24.08 0.00 0.00 2.85
2325 4100 2.088423 TGCCAACTTTCAACGTCACTT 58.912 42.857 0.00 0.00 0.00 3.16
2457 4274 2.185350 CCGCGTGGCTCTGATCTT 59.815 61.111 0.00 0.00 0.00 2.40
2507 4341 2.754254 CTTTACCTTGCCCGGCCC 60.754 66.667 7.03 0.00 0.00 5.80
2508 4342 3.449227 GCTTTACCTTGCCCGGCC 61.449 66.667 7.03 0.00 0.00 6.13
2509 4343 2.675075 TGCTTTACCTTGCCCGGC 60.675 61.111 1.04 1.04 0.00 6.13
2510 4344 0.394352 ATCTGCTTTACCTTGCCCGG 60.394 55.000 0.00 0.00 0.00 5.73
2511 4345 2.213499 CTATCTGCTTTACCTTGCCCG 58.787 52.381 0.00 0.00 0.00 6.13
2512 4346 1.950216 GCTATCTGCTTTACCTTGCCC 59.050 52.381 0.00 0.00 38.95 5.36
2580 4673 4.204012 TCATTCTTAATTTACCCCCGCAG 58.796 43.478 0.00 0.00 0.00 5.18
2584 4677 6.037940 GTCGTCTTCATTCTTAATTTACCCCC 59.962 42.308 0.00 0.00 0.00 5.40
2621 4714 3.315418 GGAGAAAACGTGTGTACTCTCC 58.685 50.000 8.17 8.17 43.41 3.71
2643 4736 1.226156 CGCTCTGTCGGAGAAGTCG 60.226 63.158 13.17 2.61 44.45 4.18
2654 4747 2.611518 GATGTAGAAAGTGCGCTCTGT 58.388 47.619 13.48 7.42 0.00 3.41
2658 4751 1.630148 GACGATGTAGAAAGTGCGCT 58.370 50.000 9.73 0.00 0.00 5.92
2682 4775 5.309638 TCCATGAACTTTGAATTCCGTGTA 58.690 37.500 2.27 0.00 0.00 2.90
2684 4777 4.764679 TCCATGAACTTTGAATTCCGTG 57.235 40.909 2.27 0.00 0.00 4.94
2686 4779 8.810427 CATTAATTCCATGAACTTTGAATTCCG 58.190 33.333 2.27 0.00 38.17 4.30
2695 4788 5.219468 TCCCCCATTAATTCCATGAACTT 57.781 39.130 0.00 0.00 0.00 2.66
2698 4791 7.019457 TCTGATATCCCCCATTAATTCCATGAA 59.981 37.037 0.00 0.00 0.00 2.57
2701 4794 6.068616 CCTCTGATATCCCCCATTAATTCCAT 60.069 42.308 0.00 0.00 0.00 3.41
2724 4817 3.258622 CCTGTAAAGGAAGAGAACGACCT 59.741 47.826 0.00 0.00 0.00 3.85
2757 5033 5.391310 CGTCCAATGAAATTTCAGTCCTCTG 60.391 44.000 24.17 10.67 41.08 3.35
2769 5046 2.225017 ACCAACCCTCGTCCAATGAAAT 60.225 45.455 0.00 0.00 0.00 2.17
2813 5090 1.019278 ATTTGCACGAATCTCCGCGT 61.019 50.000 4.92 0.00 42.11 6.01
2816 5093 4.475944 AGAAAAATTTGCACGAATCTCCG 58.524 39.130 0.00 0.00 0.00 4.63
2872 5150 4.033358 CCAAGTCTCAATCAAGCGATGTAC 59.967 45.833 0.00 0.00 30.13 2.90
2873 5151 4.183865 CCAAGTCTCAATCAAGCGATGTA 58.816 43.478 0.00 0.00 30.13 2.29
2874 5152 3.005554 CCAAGTCTCAATCAAGCGATGT 58.994 45.455 0.00 0.00 30.13 3.06
2900 5178 4.516698 ACTGAGCGAATCTTGACACAAATT 59.483 37.500 0.00 0.00 0.00 1.82
2917 5195 3.482783 GCAGCGACCGAACTGAGC 61.483 66.667 0.00 0.00 35.90 4.26
2929 5207 1.448540 AGAATCGTTCTGGGCAGCG 60.449 57.895 0.35 0.00 38.91 5.18
2970 5248 8.726836 CGTTATTTTGTATAACGCGCTATTTTT 58.273 29.630 5.73 0.00 46.36 1.94
2971 5249 8.248547 CGTTATTTTGTATAACGCGCTATTTT 57.751 30.769 5.73 0.00 46.36 1.82
2972 5250 7.810429 CGTTATTTTGTATAACGCGCTATTT 57.190 32.000 5.73 0.00 46.36 1.40
2981 5259 4.032786 ACGGACGGCGTTATTTTGTATAAC 59.967 41.667 16.19 0.00 0.00 1.89
2990 5268 1.510776 TTTTCACGGACGGCGTTATT 58.489 45.000 16.19 0.00 0.00 1.40
3018 5296 2.933495 TGTCTCGCTAATAACACGCT 57.067 45.000 0.00 0.00 0.00 5.07
3023 5301 5.051907 CGGTGTACAATGTCTCGCTAATAAC 60.052 44.000 0.00 0.00 0.00 1.89
3024 5302 5.038683 CGGTGTACAATGTCTCGCTAATAA 58.961 41.667 0.00 0.00 0.00 1.40
3025 5303 4.603985 CGGTGTACAATGTCTCGCTAATA 58.396 43.478 0.00 0.00 0.00 0.98
3026 5304 3.444916 CGGTGTACAATGTCTCGCTAAT 58.555 45.455 0.00 0.00 0.00 1.73
3027 5305 2.871133 CGGTGTACAATGTCTCGCTAA 58.129 47.619 0.00 0.00 0.00 3.09
3028 5306 1.468565 GCGGTGTACAATGTCTCGCTA 60.469 52.381 0.00 0.00 38.82 4.26
3029 5307 0.736325 GCGGTGTACAATGTCTCGCT 60.736 55.000 0.00 0.00 38.82 4.93
3030 5308 0.736325 AGCGGTGTACAATGTCTCGC 60.736 55.000 0.00 12.13 41.64 5.03
3031 5309 1.269166 GAGCGGTGTACAATGTCTCG 58.731 55.000 0.00 0.00 0.00 4.04
3032 5310 2.363788 TGAGCGGTGTACAATGTCTC 57.636 50.000 0.00 3.09 0.00 3.36
3033 5311 2.831685 TTGAGCGGTGTACAATGTCT 57.168 45.000 0.00 0.00 0.00 3.41
3034 5312 3.262420 AGATTGAGCGGTGTACAATGTC 58.738 45.455 0.00 0.00 34.94 3.06
3035 5313 3.334583 AGATTGAGCGGTGTACAATGT 57.665 42.857 0.00 0.00 34.94 2.71
3036 5314 4.682787 TCTAGATTGAGCGGTGTACAATG 58.317 43.478 0.00 0.00 34.94 2.82
3037 5315 4.645136 TCTCTAGATTGAGCGGTGTACAAT 59.355 41.667 0.00 0.00 37.03 2.71
3038 5316 4.014406 TCTCTAGATTGAGCGGTGTACAA 58.986 43.478 0.00 0.00 34.29 2.41
3039 5317 3.617284 TCTCTAGATTGAGCGGTGTACA 58.383 45.455 0.00 0.00 34.29 2.90
3040 5318 3.878103 TCTCTCTAGATTGAGCGGTGTAC 59.122 47.826 0.00 0.00 34.29 2.90
3041 5319 3.878103 GTCTCTCTAGATTGAGCGGTGTA 59.122 47.826 0.00 0.00 33.30 2.90
3042 5320 2.685897 GTCTCTCTAGATTGAGCGGTGT 59.314 50.000 0.00 0.00 33.30 4.16
3043 5321 2.685388 TGTCTCTCTAGATTGAGCGGTG 59.315 50.000 0.00 0.00 33.30 4.94
3044 5322 3.006112 TGTCTCTCTAGATTGAGCGGT 57.994 47.619 4.48 0.00 33.30 5.68
3045 5323 4.582701 ATTGTCTCTCTAGATTGAGCGG 57.417 45.455 4.48 0.00 33.30 5.52
3046 5324 7.592938 AGATAATTGTCTCTCTAGATTGAGCG 58.407 38.462 0.00 0.00 33.30 5.03
3047 5325 9.840427 GTAGATAATTGTCTCTCTAGATTGAGC 57.160 37.037 8.12 1.86 33.30 4.26
3050 5328 9.605955 CGTGTAGATAATTGTCTCTCTAGATTG 57.394 37.037 8.12 0.00 33.30 2.67
3051 5329 8.293867 GCGTGTAGATAATTGTCTCTCTAGATT 58.706 37.037 8.12 0.00 33.30 2.40
3052 5330 7.663905 AGCGTGTAGATAATTGTCTCTCTAGAT 59.336 37.037 8.12 0.00 33.30 1.98
3053 5331 6.993308 AGCGTGTAGATAATTGTCTCTCTAGA 59.007 38.462 8.12 0.00 0.00 2.43
3054 5332 7.197071 AGCGTGTAGATAATTGTCTCTCTAG 57.803 40.000 8.12 0.07 0.00 2.43
3055 5333 8.672823 TTAGCGTGTAGATAATTGTCTCTCTA 57.327 34.615 8.12 0.00 0.00 2.43
3056 5334 7.569639 TTAGCGTGTAGATAATTGTCTCTCT 57.430 36.000 8.12 0.00 0.00 3.10
3057 5335 8.533153 GTTTTAGCGTGTAGATAATTGTCTCTC 58.467 37.037 8.12 4.49 30.06 3.20
3058 5336 8.251721 AGTTTTAGCGTGTAGATAATTGTCTCT 58.748 33.333 8.12 2.17 30.06 3.10
3059 5337 8.408743 AGTTTTAGCGTGTAGATAATTGTCTC 57.591 34.615 8.12 1.95 30.06 3.36
3065 5343 9.408069 GCACTATAGTTTTAGCGTGTAGATAAT 57.592 33.333 1.56 0.00 30.06 1.28
3066 5344 7.864379 GGCACTATAGTTTTAGCGTGTAGATAA 59.136 37.037 1.56 0.00 0.00 1.75
3067 5345 7.365741 GGCACTATAGTTTTAGCGTGTAGATA 58.634 38.462 1.56 0.00 0.00 1.98
3068 5346 6.214399 GGCACTATAGTTTTAGCGTGTAGAT 58.786 40.000 1.56 0.00 0.00 1.98
3069 5347 5.450965 GGGCACTATAGTTTTAGCGTGTAGA 60.451 44.000 1.56 0.00 0.00 2.59
3070 5348 4.743644 GGGCACTATAGTTTTAGCGTGTAG 59.256 45.833 1.56 0.00 0.00 2.74
3071 5349 4.685924 GGGCACTATAGTTTTAGCGTGTA 58.314 43.478 1.56 0.00 0.00 2.90
3072 5350 3.528532 GGGCACTATAGTTTTAGCGTGT 58.471 45.455 1.56 0.00 0.00 4.49
3073 5351 2.538449 CGGGCACTATAGTTTTAGCGTG 59.462 50.000 1.56 0.00 0.00 5.34
3074 5352 2.428171 TCGGGCACTATAGTTTTAGCGT 59.572 45.455 1.56 0.00 0.00 5.07
3075 5353 3.088194 TCGGGCACTATAGTTTTAGCG 57.912 47.619 1.56 0.00 0.00 4.26
3076 5354 4.884247 AGATCGGGCACTATAGTTTTAGC 58.116 43.478 1.56 3.44 0.00 3.09
3077 5355 7.711339 AGAAAAGATCGGGCACTATAGTTTTAG 59.289 37.037 1.56 0.00 0.00 1.85
3078 5356 7.562135 AGAAAAGATCGGGCACTATAGTTTTA 58.438 34.615 1.56 0.00 0.00 1.52
3079 5357 6.415573 AGAAAAGATCGGGCACTATAGTTTT 58.584 36.000 1.56 0.00 0.00 2.43
3080 5358 5.990668 AGAAAAGATCGGGCACTATAGTTT 58.009 37.500 1.56 0.00 0.00 2.66
3081 5359 5.615925 AGAAAAGATCGGGCACTATAGTT 57.384 39.130 1.56 0.00 0.00 2.24
3082 5360 6.722129 AGATAGAAAAGATCGGGCACTATAGT 59.278 38.462 0.00 0.00 0.00 2.12
3083 5361 7.164230 AGATAGAAAAGATCGGGCACTATAG 57.836 40.000 0.00 0.00 0.00 1.31
3084 5362 6.153000 GGAGATAGAAAAGATCGGGCACTATA 59.847 42.308 0.00 0.00 0.00 1.31
3085 5363 5.046950 GGAGATAGAAAAGATCGGGCACTAT 60.047 44.000 0.00 0.00 0.00 2.12
3086 5364 4.281182 GGAGATAGAAAAGATCGGGCACTA 59.719 45.833 0.00 0.00 0.00 2.74
3087 5365 3.070302 GGAGATAGAAAAGATCGGGCACT 59.930 47.826 0.00 0.00 0.00 4.40
3088 5366 3.394719 GGAGATAGAAAAGATCGGGCAC 58.605 50.000 0.00 0.00 0.00 5.01
3089 5367 2.035961 CGGAGATAGAAAAGATCGGGCA 59.964 50.000 0.00 0.00 0.00 5.36
3090 5368 2.036089 ACGGAGATAGAAAAGATCGGGC 59.964 50.000 0.00 0.00 0.00 6.13
3091 5369 3.570550 AGACGGAGATAGAAAAGATCGGG 59.429 47.826 0.00 0.00 0.00 5.14
3092 5370 4.839668 AGACGGAGATAGAAAAGATCGG 57.160 45.455 0.00 0.00 0.00 4.18
3093 5371 5.470777 AGGTAGACGGAGATAGAAAAGATCG 59.529 44.000 0.00 0.00 0.00 3.69
3094 5372 6.887626 AGGTAGACGGAGATAGAAAAGATC 57.112 41.667 0.00 0.00 0.00 2.75
3095 5373 7.663043 AAAGGTAGACGGAGATAGAAAAGAT 57.337 36.000 0.00 0.00 0.00 2.40
3096 5374 7.321153 CAAAAGGTAGACGGAGATAGAAAAGA 58.679 38.462 0.00 0.00 0.00 2.52
3097 5375 6.535508 CCAAAAGGTAGACGGAGATAGAAAAG 59.464 42.308 0.00 0.00 0.00 2.27
3098 5376 6.403878 CCAAAAGGTAGACGGAGATAGAAAA 58.596 40.000 0.00 0.00 0.00 2.29
3099 5377 5.626116 GCCAAAAGGTAGACGGAGATAGAAA 60.626 44.000 0.00 0.00 0.00 2.52
3100 5378 4.142004 GCCAAAAGGTAGACGGAGATAGAA 60.142 45.833 0.00 0.00 0.00 2.10
3101 5379 3.383825 GCCAAAAGGTAGACGGAGATAGA 59.616 47.826 0.00 0.00 0.00 1.98
3102 5380 3.492829 GGCCAAAAGGTAGACGGAGATAG 60.493 52.174 0.00 0.00 0.00 2.08
3103 5381 2.433239 GGCCAAAAGGTAGACGGAGATA 59.567 50.000 0.00 0.00 0.00 1.98
3104 5382 1.209747 GGCCAAAAGGTAGACGGAGAT 59.790 52.381 0.00 0.00 0.00 2.75
3105 5383 0.611714 GGCCAAAAGGTAGACGGAGA 59.388 55.000 0.00 0.00 0.00 3.71
3106 5384 0.739813 CGGCCAAAAGGTAGACGGAG 60.740 60.000 2.24 0.00 0.00 4.63
3107 5385 1.294138 CGGCCAAAAGGTAGACGGA 59.706 57.895 2.24 0.00 0.00 4.69
3108 5386 0.247185 TACGGCCAAAAGGTAGACGG 59.753 55.000 2.24 0.00 0.00 4.79
3109 5387 2.304751 ATACGGCCAAAAGGTAGACG 57.695 50.000 2.24 0.00 0.00 4.18
3110 5388 2.096980 GCAATACGGCCAAAAGGTAGAC 59.903 50.000 2.24 0.00 0.00 2.59
3111 5389 2.290387 TGCAATACGGCCAAAAGGTAGA 60.290 45.455 2.24 0.00 0.00 2.59
3112 5390 2.088423 TGCAATACGGCCAAAAGGTAG 58.912 47.619 2.24 0.00 0.00 3.18
3113 5391 2.201921 TGCAATACGGCCAAAAGGTA 57.798 45.000 2.24 0.00 0.00 3.08
3114 5392 1.333177 TTGCAATACGGCCAAAAGGT 58.667 45.000 2.24 0.00 0.00 3.50
3115 5393 2.671130 ATTGCAATACGGCCAAAAGG 57.329 45.000 11.02 0.00 0.00 3.11
3116 5394 3.993081 TGAAATTGCAATACGGCCAAAAG 59.007 39.130 13.39 0.00 0.00 2.27
3117 5395 3.995199 TGAAATTGCAATACGGCCAAAA 58.005 36.364 13.39 0.00 0.00 2.44
3118 5396 3.667497 TGAAATTGCAATACGGCCAAA 57.333 38.095 13.39 0.00 0.00 3.28
3119 5397 3.883830 ATGAAATTGCAATACGGCCAA 57.116 38.095 13.39 0.00 0.00 4.52
3120 5398 3.883830 AATGAAATTGCAATACGGCCA 57.116 38.095 13.39 6.94 33.44 5.36
3121 5399 6.478344 TGATAAAATGAAATTGCAATACGGCC 59.522 34.615 13.39 0.00 36.10 6.13
3122 5400 7.462109 TGATAAAATGAAATTGCAATACGGC 57.538 32.000 13.39 3.26 36.10 5.68
3123 5401 8.489559 CCATGATAAAATGAAATTGCAATACGG 58.510 33.333 13.39 0.00 36.10 4.02
3124 5402 8.005466 GCCATGATAAAATGAAATTGCAATACG 58.995 33.333 13.39 0.00 36.10 3.06
3125 5403 9.048446 AGCCATGATAAAATGAAATTGCAATAC 57.952 29.630 13.39 10.65 36.10 1.89
3126 5404 9.616156 AAGCCATGATAAAATGAAATTGCAATA 57.384 25.926 13.39 0.00 36.10 1.90
3127 5405 8.402472 CAAGCCATGATAAAATGAAATTGCAAT 58.598 29.630 5.99 5.99 36.10 3.56
3128 5406 7.606839 TCAAGCCATGATAAAATGAAATTGCAA 59.393 29.630 0.00 0.00 31.63 4.08
3129 5407 7.104290 TCAAGCCATGATAAAATGAAATTGCA 58.896 30.769 0.00 0.00 31.63 4.08
3130 5408 7.493320 TCTCAAGCCATGATAAAATGAAATTGC 59.507 33.333 0.00 0.00 35.03 3.56
3131 5409 8.814235 GTCTCAAGCCATGATAAAATGAAATTG 58.186 33.333 0.00 0.00 35.03 2.32
3132 5410 7.983484 GGTCTCAAGCCATGATAAAATGAAATT 59.017 33.333 0.00 0.00 36.01 1.82
3133 5411 7.124599 TGGTCTCAAGCCATGATAAAATGAAAT 59.875 33.333 0.00 0.00 37.44 2.17
3134 5412 6.436847 TGGTCTCAAGCCATGATAAAATGAAA 59.563 34.615 0.00 0.00 37.44 2.69
3135 5413 5.951148 TGGTCTCAAGCCATGATAAAATGAA 59.049 36.000 0.00 0.00 37.44 2.57
3136 5414 5.508567 TGGTCTCAAGCCATGATAAAATGA 58.491 37.500 0.00 0.00 37.44 2.57
3137 5415 5.359009 ACTGGTCTCAAGCCATGATAAAATG 59.641 40.000 0.00 0.00 37.44 2.32
3138 5416 5.359009 CACTGGTCTCAAGCCATGATAAAAT 59.641 40.000 0.00 0.00 37.44 1.82
3139 5417 4.701651 CACTGGTCTCAAGCCATGATAAAA 59.298 41.667 0.00 0.00 37.44 1.52
3140 5418 4.264253 CACTGGTCTCAAGCCATGATAAA 58.736 43.478 0.00 0.00 37.44 1.40
3141 5419 3.370846 CCACTGGTCTCAAGCCATGATAA 60.371 47.826 0.00 0.00 37.44 1.75
3142 5420 2.171237 CCACTGGTCTCAAGCCATGATA 59.829 50.000 0.00 0.00 37.44 2.15
3143 5421 1.064906 CCACTGGTCTCAAGCCATGAT 60.065 52.381 0.00 0.00 37.44 2.45
3144 5422 0.325933 CCACTGGTCTCAAGCCATGA 59.674 55.000 0.00 0.00 35.19 3.07
3145 5423 1.310933 GCCACTGGTCTCAAGCCATG 61.311 60.000 0.00 0.00 35.19 3.66
3146 5424 1.001641 GCCACTGGTCTCAAGCCAT 60.002 57.895 0.00 0.00 35.19 4.40
3147 5425 2.431683 GCCACTGGTCTCAAGCCA 59.568 61.111 0.00 0.00 34.42 4.75
3148 5426 2.167398 TACGCCACTGGTCTCAAGCC 62.167 60.000 0.00 0.00 0.00 4.35
3149 5427 0.737715 CTACGCCACTGGTCTCAAGC 60.738 60.000 0.00 0.00 0.00 4.01
3150 5428 0.737715 GCTACGCCACTGGTCTCAAG 60.738 60.000 0.00 0.00 0.00 3.02
3151 5429 1.185618 AGCTACGCCACTGGTCTCAA 61.186 55.000 0.00 0.00 0.00 3.02
3152 5430 0.323087 TAGCTACGCCACTGGTCTCA 60.323 55.000 0.00 0.00 0.00 3.27
3153 5431 0.382515 CTAGCTACGCCACTGGTCTC 59.617 60.000 0.00 0.00 0.00 3.36
3154 5432 1.668101 GCTAGCTACGCCACTGGTCT 61.668 60.000 7.70 0.00 0.00 3.85
3155 5433 1.227002 GCTAGCTACGCCACTGGTC 60.227 63.158 7.70 0.00 0.00 4.02
3156 5434 2.722201 GGCTAGCTACGCCACTGGT 61.722 63.158 22.05 0.00 46.77 4.00
3157 5435 2.107141 GGCTAGCTACGCCACTGG 59.893 66.667 22.05 0.00 46.77 4.00
3162 5440 1.146263 ATGTTGGGCTAGCTACGCC 59.854 57.895 15.72 19.98 46.83 5.68
3163 5441 1.776034 GCATGTTGGGCTAGCTACGC 61.776 60.000 15.72 6.93 0.00 4.42
3164 5442 1.160329 GGCATGTTGGGCTAGCTACG 61.160 60.000 15.72 1.04 0.00 3.51
3165 5443 0.107214 TGGCATGTTGGGCTAGCTAC 60.107 55.000 15.72 10.98 0.00 3.58
3166 5444 0.181114 CTGGCATGTTGGGCTAGCTA 59.819 55.000 15.72 0.96 33.06 3.32
3167 5445 1.077212 CTGGCATGTTGGGCTAGCT 60.077 57.895 15.72 0.00 33.06 3.32
3168 5446 2.123428 CCTGGCATGTTGGGCTAGC 61.123 63.158 6.04 6.04 38.40 3.42
3169 5447 1.454479 CCCTGGCATGTTGGGCTAG 60.454 63.158 6.83 0.00 39.31 3.42
3170 5448 2.237965 ACCCTGGCATGTTGGGCTA 61.238 57.895 16.24 0.00 44.56 3.93
3171 5449 3.593680 ACCCTGGCATGTTGGGCT 61.594 61.111 16.24 5.04 44.56 5.19
3172 5450 3.384532 CACCCTGGCATGTTGGGC 61.385 66.667 16.24 0.00 44.56 5.36
3173 5451 2.681064 CCACCCTGGCATGTTGGG 60.681 66.667 15.17 15.17 46.07 4.12
3174 5452 1.978617 GACCACCCTGGCATGTTGG 60.979 63.158 4.83 4.83 42.67 3.77
3175 5453 1.978617 GGACCACCCTGGCATGTTG 60.979 63.158 0.00 0.00 42.67 3.33
3176 5454 2.440599 GGACCACCCTGGCATGTT 59.559 61.111 0.00 0.00 42.67 2.71
3177 5455 2.858476 TGGACCACCCTGGCATGT 60.858 61.111 0.00 0.00 42.67 3.21
3178 5456 2.361610 GTGGACCACCCTGGCATG 60.362 66.667 14.16 0.00 42.67 4.06
3188 5466 4.529769 TGAATATTTTGCATTGGTGGACCA 59.470 37.500 0.00 0.00 45.94 4.02
3189 5467 4.869861 GTGAATATTTTGCATTGGTGGACC 59.130 41.667 0.00 0.00 0.00 4.46
3190 5468 5.477510 TGTGAATATTTTGCATTGGTGGAC 58.522 37.500 0.00 0.00 0.00 4.02
3191 5469 5.735285 TGTGAATATTTTGCATTGGTGGA 57.265 34.783 0.00 0.00 0.00 4.02
3192 5470 8.489990 TTTATGTGAATATTTTGCATTGGTGG 57.510 30.769 0.00 0.00 0.00 4.61
3253 5531 9.067963 TGGAATTTCCCCATAATCTATATAGCA 57.932 33.333 12.90 0.00 35.03 3.49
3254 5532 9.566432 CTGGAATTTCCCCATAATCTATATAGC 57.434 37.037 12.90 0.00 35.03 2.97
3256 5534 9.014049 CCCTGGAATTTCCCCATAATCTATATA 57.986 37.037 12.90 0.00 35.03 0.86
3257 5535 7.468830 ACCCTGGAATTTCCCCATAATCTATAT 59.531 37.037 12.90 0.00 35.03 0.86
3258 5536 6.802660 ACCCTGGAATTTCCCCATAATCTATA 59.197 38.462 12.90 0.00 35.03 1.31
3259 5537 5.621329 ACCCTGGAATTTCCCCATAATCTAT 59.379 40.000 12.90 0.00 35.03 1.98
3260 5538 4.988221 ACCCTGGAATTTCCCCATAATCTA 59.012 41.667 12.90 0.00 35.03 1.98
3261 5539 3.799578 ACCCTGGAATTTCCCCATAATCT 59.200 43.478 12.90 0.00 35.03 2.40
3262 5540 3.897505 CACCCTGGAATTTCCCCATAATC 59.102 47.826 12.90 0.00 35.03 1.75
3263 5541 3.375207 CCACCCTGGAATTTCCCCATAAT 60.375 47.826 12.90 0.00 40.96 1.28
3264 5542 2.023501 CCACCCTGGAATTTCCCCATAA 60.024 50.000 12.90 0.00 40.96 1.90
3265 5543 1.573376 CCACCCTGGAATTTCCCCATA 59.427 52.381 12.90 0.00 40.96 2.74
3266 5544 0.339510 CCACCCTGGAATTTCCCCAT 59.660 55.000 12.90 0.00 40.96 4.00
3267 5545 1.077298 ACCACCCTGGAATTTCCCCA 61.077 55.000 12.90 0.00 40.96 4.96
3268 5546 0.324368 GACCACCCTGGAATTTCCCC 60.324 60.000 12.90 0.00 40.96 4.81
3269 5547 0.324368 GGACCACCCTGGAATTTCCC 60.324 60.000 12.90 0.00 40.96 3.97
3270 5548 0.407918 TGGACCACCCTGGAATTTCC 59.592 55.000 8.59 8.59 40.96 3.13
3271 5549 2.102578 CATGGACCACCCTGGAATTTC 58.897 52.381 0.00 0.00 40.96 2.17
3272 5550 2.236489 CATGGACCACCCTGGAATTT 57.764 50.000 0.00 0.00 40.96 1.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.