Multiple sequence alignment - TraesCS7D01G151900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G151900 chr7D 100.000 3390 0 0 1 3390 100988823 100985434 0.000000e+00 6261.0
1 TraesCS7D01G151900 chr7D 83.811 1291 184 16 1094 2370 100307714 100306435 0.000000e+00 1203.0
2 TraesCS7D01G151900 chr7D 82.609 1311 196 25 1079 2370 100939542 100940839 0.000000e+00 1129.0
3 TraesCS7D01G151900 chr7B 93.515 1943 67 25 808 2721 57269605 57267693 0.000000e+00 2835.0
4 TraesCS7D01G151900 chr7B 82.908 1293 188 24 1094 2370 56390333 56389058 0.000000e+00 1133.0
5 TraesCS7D01G151900 chr7B 82.740 1292 196 19 1094 2370 57065944 57067223 0.000000e+00 1125.0
6 TraesCS7D01G151900 chr7B 88.209 441 28 8 351 786 57270272 57269851 3.900000e-139 505.0
7 TraesCS7D01G151900 chr7B 92.086 278 14 4 3113 3388 57265889 57265618 5.310000e-103 385.0
8 TraesCS7D01G151900 chr7A 94.749 1771 59 18 625 2378 103116301 103114548 0.000000e+00 2724.0
9 TraesCS7D01G151900 chr7A 83.926 1294 180 18 1094 2370 103071498 103072780 0.000000e+00 1212.0
10 TraesCS7D01G151900 chr7A 98.895 181 0 2 44 223 17978998 17978819 4.220000e-84 322.0
11 TraesCS7D01G151900 chr7A 87.189 281 20 12 2713 2984 103114075 103113802 4.250000e-79 305.0
12 TraesCS7D01G151900 chr7A 88.312 77 8 1 562 637 103116547 103116471 1.300000e-14 91.6
13 TraesCS7D01G151900 chr3B 91.845 1447 107 6 927 2363 560557844 560556399 0.000000e+00 2008.0
14 TraesCS7D01G151900 chr3B 97.253 182 3 2 44 224 40234036 40234216 1.180000e-79 307.0
15 TraesCS7D01G151900 chr3B 85.075 67 5 3 757 823 560558032 560557971 2.820000e-06 63.9
16 TraesCS7D01G151900 chr3D 92.407 1396 96 5 977 2363 428534023 428532629 0.000000e+00 1982.0
17 TraesCS7D01G151900 chr3D 86.154 65 9 0 294 358 133105826 133105890 1.690000e-08 71.3
18 TraesCS7D01G151900 chr6A 98.333 180 1 2 45 223 16360185 16360007 7.060000e-82 315.0
19 TraesCS7D01G151900 chr1A 100.000 170 0 0 46 215 26385223 26385054 7.060000e-82 315.0
20 TraesCS7D01G151900 chr1D 97.778 180 4 0 45 224 469836260 469836081 9.130000e-81 311.0
21 TraesCS7D01G151900 chrUn 97.790 181 0 4 45 223 108724782 108724604 3.290000e-80 309.0
22 TraesCS7D01G151900 chrUn 96.277 188 5 2 43 229 74769764 74769950 1.180000e-79 307.0
23 TraesCS7D01G151900 chrUn 97.059 34 1 0 1278 1311 339715609 339715642 1.310000e-04 58.4
24 TraesCS7D01G151900 chr5B 97.778 180 3 1 49 227 557109293 557109114 3.290000e-80 309.0
25 TraesCS7D01G151900 chr5B 97.253 182 3 2 48 228 419621970 419621790 1.180000e-79 307.0
26 TraesCS7D01G151900 chr6B 100.000 33 0 0 326 358 693039659 693039691 1.020000e-05 62.1
27 TraesCS7D01G151900 chr4D 96.970 33 1 0 326 358 508346704 508346736 4.730000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G151900 chr7D 100985434 100988823 3389 True 6261.000000 6261 100.000000 1 3390 1 chr7D.!!$R2 3389
1 TraesCS7D01G151900 chr7D 100306435 100307714 1279 True 1203.000000 1203 83.811000 1094 2370 1 chr7D.!!$R1 1276
2 TraesCS7D01G151900 chr7D 100939542 100940839 1297 False 1129.000000 1129 82.609000 1079 2370 1 chr7D.!!$F1 1291
3 TraesCS7D01G151900 chr7B 57265618 57270272 4654 True 1241.666667 2835 91.270000 351 3388 3 chr7B.!!$R2 3037
4 TraesCS7D01G151900 chr7B 56389058 56390333 1275 True 1133.000000 1133 82.908000 1094 2370 1 chr7B.!!$R1 1276
5 TraesCS7D01G151900 chr7B 57065944 57067223 1279 False 1125.000000 1125 82.740000 1094 2370 1 chr7B.!!$F1 1276
6 TraesCS7D01G151900 chr7A 103071498 103072780 1282 False 1212.000000 1212 83.926000 1094 2370 1 chr7A.!!$F1 1276
7 TraesCS7D01G151900 chr7A 103113802 103116547 2745 True 1040.200000 2724 90.083333 562 2984 3 chr7A.!!$R2 2422
8 TraesCS7D01G151900 chr3B 560556399 560558032 1633 True 1035.950000 2008 88.460000 757 2363 2 chr3B.!!$R1 1606
9 TraesCS7D01G151900 chr3D 428532629 428534023 1394 True 1982.000000 1982 92.407000 977 2363 1 chr3D.!!$R1 1386

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
207 208 0.107214 TGGCATGTTGGGCTAGCTAC 60.107 55.0 15.72 10.98 0.0 3.58 F
264 265 0.247185 TACGGCCAAAAGGTAGACGG 59.753 55.0 2.24 0.00 0.0 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1946 2469 2.357760 GCGTTGCCGAAGTACCCA 60.358 61.111 0.0 0.0 35.63 4.51 R
2402 2926 0.671781 GCCAGCAGTGTGTGTAGGAG 60.672 60.000 0.0 0.0 0.00 3.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 9.827411 CAAGAGAAAAAGGTAAACATAGTAAGC 57.173 33.333 0.00 0.00 0.00 3.09
28 29 9.569122 AAGAGAAAAAGGTAAACATAGTAAGCA 57.431 29.630 0.00 0.00 0.00 3.91
29 30 9.740710 AGAGAAAAAGGTAAACATAGTAAGCAT 57.259 29.630 0.00 0.00 0.00 3.79
30 31 9.774742 GAGAAAAAGGTAAACATAGTAAGCATG 57.225 33.333 0.00 0.00 0.00 4.06
31 32 8.739972 AGAAAAAGGTAAACATAGTAAGCATGG 58.260 33.333 0.00 0.00 0.00 3.66
32 33 7.404671 AAAAGGTAAACATAGTAAGCATGGG 57.595 36.000 0.00 0.00 0.00 4.00
33 34 5.710409 AGGTAAACATAGTAAGCATGGGT 57.290 39.130 0.00 0.00 0.00 4.51
34 35 5.437060 AGGTAAACATAGTAAGCATGGGTG 58.563 41.667 0.00 0.00 0.00 4.61
35 36 5.190925 AGGTAAACATAGTAAGCATGGGTGA 59.809 40.000 0.00 0.00 0.00 4.02
36 37 5.883673 GGTAAACATAGTAAGCATGGGTGAA 59.116 40.000 0.00 0.00 0.00 3.18
37 38 6.376018 GGTAAACATAGTAAGCATGGGTGAAA 59.624 38.462 0.00 0.00 0.00 2.69
38 39 7.068226 GGTAAACATAGTAAGCATGGGTGAAAT 59.932 37.037 0.00 0.00 0.00 2.17
39 40 9.116067 GTAAACATAGTAAGCATGGGTGAAATA 57.884 33.333 0.00 0.00 0.00 1.40
40 41 7.807977 AACATAGTAAGCATGGGTGAAATAG 57.192 36.000 0.00 0.00 0.00 1.73
41 42 6.900194 ACATAGTAAGCATGGGTGAAATAGT 58.100 36.000 0.00 0.00 0.00 2.12
42 43 6.992715 ACATAGTAAGCATGGGTGAAATAGTC 59.007 38.462 0.00 0.00 0.00 2.59
43 44 5.700402 AGTAAGCATGGGTGAAATAGTCT 57.300 39.130 0.00 0.00 0.00 3.24
44 45 5.675538 AGTAAGCATGGGTGAAATAGTCTC 58.324 41.667 0.00 0.00 0.00 3.36
45 46 4.574674 AAGCATGGGTGAAATAGTCTCA 57.425 40.909 0.00 0.00 0.00 3.27
46 47 4.574674 AGCATGGGTGAAATAGTCTCAA 57.425 40.909 0.00 0.00 0.00 3.02
47 48 4.521146 AGCATGGGTGAAATAGTCTCAAG 58.479 43.478 0.00 0.00 0.00 3.02
48 49 3.065925 GCATGGGTGAAATAGTCTCAAGC 59.934 47.826 0.00 0.00 0.00 4.01
49 50 4.264253 CATGGGTGAAATAGTCTCAAGCA 58.736 43.478 0.00 0.00 0.00 3.91
50 51 3.942829 TGGGTGAAATAGTCTCAAGCAG 58.057 45.455 0.00 0.00 0.00 4.24
51 52 3.327757 TGGGTGAAATAGTCTCAAGCAGT 59.672 43.478 0.00 0.00 0.00 4.40
52 53 3.686726 GGGTGAAATAGTCTCAAGCAGTG 59.313 47.826 0.00 0.00 0.00 3.66
53 54 3.686726 GGTGAAATAGTCTCAAGCAGTGG 59.313 47.826 0.00 0.00 0.00 4.00
54 55 3.126000 GTGAAATAGTCTCAAGCAGTGGC 59.874 47.826 0.00 0.00 41.61 5.01
65 66 1.367840 GCAGTGGCGTATCTAGGGG 59.632 63.158 0.00 0.00 0.00 4.79
66 67 2.050269 CAGTGGCGTATCTAGGGGG 58.950 63.158 0.00 0.00 0.00 5.40
67 68 0.759436 CAGTGGCGTATCTAGGGGGT 60.759 60.000 0.00 0.00 0.00 4.95
68 69 0.759436 AGTGGCGTATCTAGGGGGTG 60.759 60.000 0.00 0.00 0.00 4.61
69 70 1.458777 TGGCGTATCTAGGGGGTGG 60.459 63.158 0.00 0.00 0.00 4.61
70 71 1.152398 GGCGTATCTAGGGGGTGGA 60.152 63.158 0.00 0.00 0.00 4.02
71 72 1.470165 GGCGTATCTAGGGGGTGGAC 61.470 65.000 0.00 0.00 0.00 4.02
72 73 0.757935 GCGTATCTAGGGGGTGGACA 60.758 60.000 0.00 0.00 0.00 4.02
73 74 1.329256 CGTATCTAGGGGGTGGACAG 58.671 60.000 0.00 0.00 0.00 3.51
74 75 1.718280 GTATCTAGGGGGTGGACAGG 58.282 60.000 0.00 0.00 0.00 4.00
75 76 0.566176 TATCTAGGGGGTGGACAGGG 59.434 60.000 0.00 0.00 0.00 4.45
76 77 1.537478 ATCTAGGGGGTGGACAGGGT 61.537 60.000 0.00 0.00 0.00 4.34
77 78 1.995626 CTAGGGGGTGGACAGGGTG 60.996 68.421 0.00 0.00 0.00 4.61
78 79 3.572715 TAGGGGGTGGACAGGGTGG 62.573 68.421 0.00 0.00 0.00 4.61
80 81 3.647771 GGGGTGGACAGGGTGGTC 61.648 72.222 0.00 0.00 37.06 4.02
100 101 2.236489 CATGGACCACCCTGGAATTT 57.764 50.000 0.00 0.00 40.96 1.82
101 102 2.102578 CATGGACCACCCTGGAATTTC 58.897 52.381 0.00 0.00 40.96 2.17
102 103 0.407918 TGGACCACCCTGGAATTTCC 59.592 55.000 8.59 8.59 40.96 3.13
103 104 0.324368 GGACCACCCTGGAATTTCCC 60.324 60.000 12.90 0.00 40.96 3.97
104 105 0.324368 GACCACCCTGGAATTTCCCC 60.324 60.000 12.90 0.00 40.96 4.81
105 106 1.077298 ACCACCCTGGAATTTCCCCA 61.077 55.000 12.90 0.00 40.96 4.96
106 107 0.339510 CCACCCTGGAATTTCCCCAT 59.660 55.000 12.90 0.00 40.96 4.00
107 108 1.573376 CCACCCTGGAATTTCCCCATA 59.427 52.381 12.90 0.00 40.96 2.74
108 109 2.023501 CCACCCTGGAATTTCCCCATAA 60.024 50.000 12.90 0.00 40.96 1.90
109 110 3.375207 CCACCCTGGAATTTCCCCATAAT 60.375 47.826 12.90 0.00 40.96 1.28
110 111 3.897505 CACCCTGGAATTTCCCCATAATC 59.102 47.826 12.90 0.00 35.03 1.75
111 112 3.799578 ACCCTGGAATTTCCCCATAATCT 59.200 43.478 12.90 0.00 35.03 2.40
112 113 4.988221 ACCCTGGAATTTCCCCATAATCTA 59.012 41.667 12.90 0.00 35.03 1.98
113 114 5.621329 ACCCTGGAATTTCCCCATAATCTAT 59.379 40.000 12.90 0.00 35.03 1.98
114 115 6.802660 ACCCTGGAATTTCCCCATAATCTATA 59.197 38.462 12.90 0.00 35.03 1.31
115 116 7.468830 ACCCTGGAATTTCCCCATAATCTATAT 59.531 37.037 12.90 0.00 35.03 0.86
116 117 9.014049 CCCTGGAATTTCCCCATAATCTATATA 57.986 37.037 12.90 0.00 35.03 0.86
118 119 9.566432 CTGGAATTTCCCCATAATCTATATAGC 57.434 37.037 12.90 0.00 35.03 2.97
119 120 9.067963 TGGAATTTCCCCATAATCTATATAGCA 57.932 33.333 12.90 0.00 35.03 3.49
180 181 8.489990 TTTATGTGAATATTTTGCATTGGTGG 57.510 30.769 0.00 0.00 0.00 4.61
181 182 5.735285 TGTGAATATTTTGCATTGGTGGA 57.265 34.783 0.00 0.00 0.00 4.02
182 183 5.477510 TGTGAATATTTTGCATTGGTGGAC 58.522 37.500 0.00 0.00 0.00 4.02
183 184 4.869861 GTGAATATTTTGCATTGGTGGACC 59.130 41.667 0.00 0.00 0.00 4.46
184 185 4.529769 TGAATATTTTGCATTGGTGGACCA 59.470 37.500 0.00 0.00 45.94 4.02
194 195 2.361610 GTGGACCACCCTGGCATG 60.362 66.667 14.16 0.00 42.67 4.06
195 196 2.858476 TGGACCACCCTGGCATGT 60.858 61.111 0.00 0.00 42.67 3.21
196 197 2.440599 GGACCACCCTGGCATGTT 59.559 61.111 0.00 0.00 42.67 2.71
197 198 1.978617 GGACCACCCTGGCATGTTG 60.979 63.158 0.00 0.00 42.67 3.33
198 199 1.978617 GACCACCCTGGCATGTTGG 60.979 63.158 4.83 4.83 42.67 3.77
199 200 2.681064 CCACCCTGGCATGTTGGG 60.681 66.667 15.17 15.17 46.07 4.12
200 201 3.384532 CACCCTGGCATGTTGGGC 61.385 66.667 16.24 0.00 44.56 5.36
201 202 3.593680 ACCCTGGCATGTTGGGCT 61.594 61.111 16.24 5.04 44.56 5.19
202 203 2.237965 ACCCTGGCATGTTGGGCTA 61.238 57.895 16.24 0.00 44.56 3.93
203 204 1.454479 CCCTGGCATGTTGGGCTAG 60.454 63.158 6.83 0.00 39.31 3.42
204 205 2.123428 CCTGGCATGTTGGGCTAGC 61.123 63.158 6.04 6.04 38.40 3.42
205 206 1.077212 CTGGCATGTTGGGCTAGCT 60.077 57.895 15.72 0.00 33.06 3.32
206 207 0.181114 CTGGCATGTTGGGCTAGCTA 59.819 55.000 15.72 0.96 33.06 3.32
207 208 0.107214 TGGCATGTTGGGCTAGCTAC 60.107 55.000 15.72 10.98 0.00 3.58
208 209 1.160329 GGCATGTTGGGCTAGCTACG 61.160 60.000 15.72 1.04 0.00 3.51
209 210 1.776034 GCATGTTGGGCTAGCTACGC 61.776 60.000 15.72 6.93 0.00 4.42
210 211 1.146263 ATGTTGGGCTAGCTACGCC 59.854 57.895 15.72 19.98 46.83 5.68
215 216 2.107141 GGCTAGCTACGCCACTGG 59.893 66.667 22.05 0.00 46.77 4.00
216 217 2.722201 GGCTAGCTACGCCACTGGT 61.722 63.158 22.05 0.00 46.77 4.00
217 218 1.227002 GCTAGCTACGCCACTGGTC 60.227 63.158 7.70 0.00 0.00 4.02
218 219 1.668101 GCTAGCTACGCCACTGGTCT 61.668 60.000 7.70 0.00 0.00 3.85
219 220 0.382515 CTAGCTACGCCACTGGTCTC 59.617 60.000 0.00 0.00 0.00 3.36
220 221 0.323087 TAGCTACGCCACTGGTCTCA 60.323 55.000 0.00 0.00 0.00 3.27
221 222 1.185618 AGCTACGCCACTGGTCTCAA 61.186 55.000 0.00 0.00 0.00 3.02
222 223 0.737715 GCTACGCCACTGGTCTCAAG 60.738 60.000 0.00 0.00 0.00 3.02
223 224 0.737715 CTACGCCACTGGTCTCAAGC 60.738 60.000 0.00 0.00 0.00 4.01
224 225 2.167398 TACGCCACTGGTCTCAAGCC 62.167 60.000 0.00 0.00 0.00 4.35
225 226 2.431683 GCCACTGGTCTCAAGCCA 59.568 61.111 0.00 0.00 34.42 4.75
226 227 1.001641 GCCACTGGTCTCAAGCCAT 60.002 57.895 0.00 0.00 35.19 4.40
227 228 1.310933 GCCACTGGTCTCAAGCCATG 61.311 60.000 0.00 0.00 35.19 3.66
228 229 0.325933 CCACTGGTCTCAAGCCATGA 59.674 55.000 0.00 0.00 35.19 3.07
229 230 1.064906 CCACTGGTCTCAAGCCATGAT 60.065 52.381 0.00 0.00 37.44 2.45
230 231 2.171237 CCACTGGTCTCAAGCCATGATA 59.829 50.000 0.00 0.00 37.44 2.15
231 232 3.370846 CCACTGGTCTCAAGCCATGATAA 60.371 47.826 0.00 0.00 37.44 1.75
232 233 4.264253 CACTGGTCTCAAGCCATGATAAA 58.736 43.478 0.00 0.00 37.44 1.40
233 234 4.701651 CACTGGTCTCAAGCCATGATAAAA 59.298 41.667 0.00 0.00 37.44 1.52
234 235 5.359009 CACTGGTCTCAAGCCATGATAAAAT 59.641 40.000 0.00 0.00 37.44 1.82
235 236 5.359009 ACTGGTCTCAAGCCATGATAAAATG 59.641 40.000 0.00 0.00 37.44 2.32
236 237 5.508567 TGGTCTCAAGCCATGATAAAATGA 58.491 37.500 0.00 0.00 37.44 2.57
237 238 5.951148 TGGTCTCAAGCCATGATAAAATGAA 59.049 36.000 0.00 0.00 37.44 2.57
238 239 6.436847 TGGTCTCAAGCCATGATAAAATGAAA 59.563 34.615 0.00 0.00 37.44 2.69
239 240 7.124599 TGGTCTCAAGCCATGATAAAATGAAAT 59.875 33.333 0.00 0.00 37.44 2.17
240 241 7.983484 GGTCTCAAGCCATGATAAAATGAAATT 59.017 33.333 0.00 0.00 36.01 1.82
241 242 8.814235 GTCTCAAGCCATGATAAAATGAAATTG 58.186 33.333 0.00 0.00 35.03 2.32
242 243 7.493320 TCTCAAGCCATGATAAAATGAAATTGC 59.507 33.333 0.00 0.00 35.03 3.56
243 244 7.104290 TCAAGCCATGATAAAATGAAATTGCA 58.896 30.769 0.00 0.00 31.63 4.08
244 245 7.606839 TCAAGCCATGATAAAATGAAATTGCAA 59.393 29.630 0.00 0.00 31.63 4.08
245 246 8.402472 CAAGCCATGATAAAATGAAATTGCAAT 58.598 29.630 5.99 5.99 36.10 3.56
246 247 9.616156 AAGCCATGATAAAATGAAATTGCAATA 57.384 25.926 13.39 0.00 36.10 1.90
247 248 9.048446 AGCCATGATAAAATGAAATTGCAATAC 57.952 29.630 13.39 10.65 36.10 1.89
248 249 8.005466 GCCATGATAAAATGAAATTGCAATACG 58.995 33.333 13.39 0.00 36.10 3.06
249 250 8.489559 CCATGATAAAATGAAATTGCAATACGG 58.510 33.333 13.39 0.00 36.10 4.02
250 251 7.462109 TGATAAAATGAAATTGCAATACGGC 57.538 32.000 13.39 3.26 36.10 5.68
251 252 6.478344 TGATAAAATGAAATTGCAATACGGCC 59.522 34.615 13.39 0.00 36.10 6.13
252 253 3.883830 AATGAAATTGCAATACGGCCA 57.116 38.095 13.39 6.94 33.44 5.36
253 254 3.883830 ATGAAATTGCAATACGGCCAA 57.116 38.095 13.39 0.00 0.00 4.52
254 255 3.667497 TGAAATTGCAATACGGCCAAA 57.333 38.095 13.39 0.00 0.00 3.28
255 256 3.995199 TGAAATTGCAATACGGCCAAAA 58.005 36.364 13.39 0.00 0.00 2.44
256 257 3.993081 TGAAATTGCAATACGGCCAAAAG 59.007 39.130 13.39 0.00 0.00 2.27
257 258 2.671130 ATTGCAATACGGCCAAAAGG 57.329 45.000 11.02 0.00 0.00 3.11
258 259 1.333177 TTGCAATACGGCCAAAAGGT 58.667 45.000 2.24 0.00 0.00 3.50
259 260 2.201921 TGCAATACGGCCAAAAGGTA 57.798 45.000 2.24 0.00 0.00 3.08
260 261 2.088423 TGCAATACGGCCAAAAGGTAG 58.912 47.619 2.24 0.00 0.00 3.18
261 262 2.290387 TGCAATACGGCCAAAAGGTAGA 60.290 45.455 2.24 0.00 0.00 2.59
262 263 2.096980 GCAATACGGCCAAAAGGTAGAC 59.903 50.000 2.24 0.00 0.00 2.59
263 264 2.304751 ATACGGCCAAAAGGTAGACG 57.695 50.000 2.24 0.00 0.00 4.18
264 265 0.247185 TACGGCCAAAAGGTAGACGG 59.753 55.000 2.24 0.00 0.00 4.79
265 266 1.294138 CGGCCAAAAGGTAGACGGA 59.706 57.895 2.24 0.00 0.00 4.69
266 267 0.739813 CGGCCAAAAGGTAGACGGAG 60.740 60.000 2.24 0.00 0.00 4.63
267 268 0.611714 GGCCAAAAGGTAGACGGAGA 59.388 55.000 0.00 0.00 0.00 3.71
268 269 1.209747 GGCCAAAAGGTAGACGGAGAT 59.790 52.381 0.00 0.00 0.00 2.75
269 270 2.433239 GGCCAAAAGGTAGACGGAGATA 59.567 50.000 0.00 0.00 0.00 1.98
270 271 3.492829 GGCCAAAAGGTAGACGGAGATAG 60.493 52.174 0.00 0.00 0.00 2.08
271 272 3.383825 GCCAAAAGGTAGACGGAGATAGA 59.616 47.826 0.00 0.00 0.00 1.98
272 273 4.142004 GCCAAAAGGTAGACGGAGATAGAA 60.142 45.833 0.00 0.00 0.00 2.10
273 274 5.626116 GCCAAAAGGTAGACGGAGATAGAAA 60.626 44.000 0.00 0.00 0.00 2.52
274 275 6.403878 CCAAAAGGTAGACGGAGATAGAAAA 58.596 40.000 0.00 0.00 0.00 2.29
275 276 6.535508 CCAAAAGGTAGACGGAGATAGAAAAG 59.464 42.308 0.00 0.00 0.00 2.27
276 277 7.321153 CAAAAGGTAGACGGAGATAGAAAAGA 58.679 38.462 0.00 0.00 0.00 2.52
277 278 7.663043 AAAGGTAGACGGAGATAGAAAAGAT 57.337 36.000 0.00 0.00 0.00 2.40
278 279 6.887626 AGGTAGACGGAGATAGAAAAGATC 57.112 41.667 0.00 0.00 0.00 2.75
279 280 5.470777 AGGTAGACGGAGATAGAAAAGATCG 59.529 44.000 0.00 0.00 0.00 3.69
280 281 4.839668 AGACGGAGATAGAAAAGATCGG 57.160 45.455 0.00 0.00 0.00 4.18
281 282 3.570550 AGACGGAGATAGAAAAGATCGGG 59.429 47.826 0.00 0.00 0.00 5.14
282 283 2.036089 ACGGAGATAGAAAAGATCGGGC 59.964 50.000 0.00 0.00 0.00 6.13
283 284 2.035961 CGGAGATAGAAAAGATCGGGCA 59.964 50.000 0.00 0.00 0.00 5.36
284 285 3.394719 GGAGATAGAAAAGATCGGGCAC 58.605 50.000 0.00 0.00 0.00 5.01
285 286 3.070302 GGAGATAGAAAAGATCGGGCACT 59.930 47.826 0.00 0.00 0.00 4.40
286 287 4.281182 GGAGATAGAAAAGATCGGGCACTA 59.719 45.833 0.00 0.00 0.00 2.74
287 288 5.046950 GGAGATAGAAAAGATCGGGCACTAT 60.047 44.000 0.00 0.00 0.00 2.12
288 289 6.153000 GGAGATAGAAAAGATCGGGCACTATA 59.847 42.308 0.00 0.00 0.00 1.31
289 290 7.164230 AGATAGAAAAGATCGGGCACTATAG 57.836 40.000 0.00 0.00 0.00 1.31
290 291 6.722129 AGATAGAAAAGATCGGGCACTATAGT 59.278 38.462 0.00 0.00 0.00 2.12
291 292 5.615925 AGAAAAGATCGGGCACTATAGTT 57.384 39.130 1.56 0.00 0.00 2.24
292 293 5.990668 AGAAAAGATCGGGCACTATAGTTT 58.009 37.500 1.56 0.00 0.00 2.66
293 294 6.415573 AGAAAAGATCGGGCACTATAGTTTT 58.584 36.000 1.56 0.00 0.00 2.43
294 295 7.562135 AGAAAAGATCGGGCACTATAGTTTTA 58.438 34.615 1.56 0.00 0.00 1.52
295 296 7.711339 AGAAAAGATCGGGCACTATAGTTTTAG 59.289 37.037 1.56 0.00 0.00 1.85
296 297 4.884247 AGATCGGGCACTATAGTTTTAGC 58.116 43.478 1.56 3.44 0.00 3.09
297 298 3.088194 TCGGGCACTATAGTTTTAGCG 57.912 47.619 1.56 0.00 0.00 4.26
298 299 2.428171 TCGGGCACTATAGTTTTAGCGT 59.572 45.455 1.56 0.00 0.00 5.07
299 300 2.538449 CGGGCACTATAGTTTTAGCGTG 59.462 50.000 1.56 0.00 0.00 5.34
300 301 3.528532 GGGCACTATAGTTTTAGCGTGT 58.471 45.455 1.56 0.00 0.00 4.49
301 302 4.685924 GGGCACTATAGTTTTAGCGTGTA 58.314 43.478 1.56 0.00 0.00 2.90
302 303 4.743644 GGGCACTATAGTTTTAGCGTGTAG 59.256 45.833 1.56 0.00 0.00 2.74
303 304 5.450965 GGGCACTATAGTTTTAGCGTGTAGA 60.451 44.000 1.56 0.00 0.00 2.59
304 305 6.214399 GGCACTATAGTTTTAGCGTGTAGAT 58.786 40.000 1.56 0.00 0.00 1.98
305 306 7.365741 GGCACTATAGTTTTAGCGTGTAGATA 58.634 38.462 1.56 0.00 0.00 1.98
306 307 7.864379 GGCACTATAGTTTTAGCGTGTAGATAA 59.136 37.037 1.56 0.00 0.00 1.75
307 308 9.408069 GCACTATAGTTTTAGCGTGTAGATAAT 57.592 33.333 1.56 0.00 30.06 1.28
313 314 8.408743 AGTTTTAGCGTGTAGATAATTGTCTC 57.591 34.615 8.12 1.95 30.06 3.36
314 315 8.251721 AGTTTTAGCGTGTAGATAATTGTCTCT 58.748 33.333 8.12 2.17 30.06 3.10
315 316 8.533153 GTTTTAGCGTGTAGATAATTGTCTCTC 58.467 37.037 8.12 4.49 30.06 3.20
316 317 7.569639 TTAGCGTGTAGATAATTGTCTCTCT 57.430 36.000 8.12 0.00 0.00 3.10
317 318 8.672823 TTAGCGTGTAGATAATTGTCTCTCTA 57.327 34.615 8.12 0.00 0.00 2.43
318 319 7.197071 AGCGTGTAGATAATTGTCTCTCTAG 57.803 40.000 8.12 0.07 0.00 2.43
319 320 6.993308 AGCGTGTAGATAATTGTCTCTCTAGA 59.007 38.462 8.12 0.00 0.00 2.43
320 321 7.663905 AGCGTGTAGATAATTGTCTCTCTAGAT 59.336 37.037 8.12 0.00 33.30 1.98
321 322 8.293867 GCGTGTAGATAATTGTCTCTCTAGATT 58.706 37.037 8.12 0.00 33.30 2.40
322 323 9.605955 CGTGTAGATAATTGTCTCTCTAGATTG 57.394 37.037 8.12 0.00 33.30 2.67
325 326 9.840427 GTAGATAATTGTCTCTCTAGATTGAGC 57.160 37.037 8.12 1.86 33.30 4.26
326 327 7.592938 AGATAATTGTCTCTCTAGATTGAGCG 58.407 38.462 0.00 0.00 33.30 5.03
327 328 4.582701 ATTGTCTCTCTAGATTGAGCGG 57.417 45.455 4.48 0.00 33.30 5.52
328 329 3.006112 TGTCTCTCTAGATTGAGCGGT 57.994 47.619 4.48 0.00 33.30 5.68
329 330 2.685388 TGTCTCTCTAGATTGAGCGGTG 59.315 50.000 0.00 0.00 33.30 4.94
330 331 2.685897 GTCTCTCTAGATTGAGCGGTGT 59.314 50.000 0.00 0.00 33.30 4.16
331 332 3.878103 GTCTCTCTAGATTGAGCGGTGTA 59.122 47.826 0.00 0.00 33.30 2.90
332 333 3.878103 TCTCTCTAGATTGAGCGGTGTAC 59.122 47.826 0.00 0.00 34.29 2.90
333 334 3.617284 TCTCTAGATTGAGCGGTGTACA 58.383 45.455 0.00 0.00 34.29 2.90
334 335 4.014406 TCTCTAGATTGAGCGGTGTACAA 58.986 43.478 0.00 0.00 34.29 2.41
335 336 4.645136 TCTCTAGATTGAGCGGTGTACAAT 59.355 41.667 0.00 0.00 37.03 2.71
336 337 4.682787 TCTAGATTGAGCGGTGTACAATG 58.317 43.478 0.00 0.00 34.94 2.82
337 338 3.334583 AGATTGAGCGGTGTACAATGT 57.665 42.857 0.00 0.00 34.94 2.71
338 339 3.262420 AGATTGAGCGGTGTACAATGTC 58.738 45.455 0.00 0.00 34.94 3.06
339 340 2.831685 TTGAGCGGTGTACAATGTCT 57.168 45.000 0.00 0.00 0.00 3.41
340 341 2.363788 TGAGCGGTGTACAATGTCTC 57.636 50.000 0.00 3.09 0.00 3.36
341 342 1.269166 GAGCGGTGTACAATGTCTCG 58.731 55.000 0.00 0.00 0.00 4.04
342 343 0.736325 AGCGGTGTACAATGTCTCGC 60.736 55.000 0.00 12.13 41.64 5.03
343 344 0.736325 GCGGTGTACAATGTCTCGCT 60.736 55.000 0.00 0.00 38.82 4.93
344 345 1.468565 GCGGTGTACAATGTCTCGCTA 60.469 52.381 0.00 0.00 38.82 4.26
345 346 2.871133 CGGTGTACAATGTCTCGCTAA 58.129 47.619 0.00 0.00 0.00 3.09
346 347 3.444916 CGGTGTACAATGTCTCGCTAAT 58.555 45.455 0.00 0.00 0.00 1.73
347 348 4.603985 CGGTGTACAATGTCTCGCTAATA 58.396 43.478 0.00 0.00 0.00 0.98
348 349 5.038683 CGGTGTACAATGTCTCGCTAATAA 58.961 41.667 0.00 0.00 0.00 1.40
349 350 5.051907 CGGTGTACAATGTCTCGCTAATAAC 60.052 44.000 0.00 0.00 0.00 1.89
354 355 2.933495 TGTCTCGCTAATAACACGCT 57.067 45.000 0.00 0.00 0.00 5.07
382 383 1.510776 TTTTCACGGACGGCGTTATT 58.489 45.000 16.19 0.00 0.00 1.40
391 392 4.032786 ACGGACGGCGTTATTTTGTATAAC 59.967 41.667 16.19 0.00 0.00 1.89
400 401 7.810429 CGTTATTTTGTATAACGCGCTATTT 57.190 32.000 5.73 0.00 46.36 1.40
401 402 8.248547 CGTTATTTTGTATAACGCGCTATTTT 57.751 30.769 5.73 0.00 46.36 1.82
402 403 8.726836 CGTTATTTTGTATAACGCGCTATTTTT 58.273 29.630 5.73 0.00 46.36 1.94
443 444 1.448540 AGAATCGTTCTGGGCAGCG 60.449 57.895 0.35 0.00 38.91 5.18
455 456 3.482783 GCAGCGACCGAACTGAGC 61.483 66.667 0.00 0.00 35.90 4.26
472 473 4.516698 ACTGAGCGAATCTTGACACAAATT 59.483 37.500 0.00 0.00 0.00 1.82
498 499 3.005554 CCAAGTCTCAATCAAGCGATGT 58.994 45.455 0.00 0.00 30.13 3.06
499 500 4.183865 CCAAGTCTCAATCAAGCGATGTA 58.816 43.478 0.00 0.00 30.13 2.29
500 501 4.033358 CCAAGTCTCAATCAAGCGATGTAC 59.967 45.833 0.00 0.00 30.13 2.90
556 558 4.475944 AGAAAAATTTGCACGAATCTCCG 58.524 39.130 0.00 0.00 0.00 4.63
559 561 1.019278 ATTTGCACGAATCTCCGCGT 61.019 50.000 4.92 0.00 42.11 6.01
603 605 2.225017 ACCAACCCTCGTCCAATGAAAT 60.225 45.455 0.00 0.00 0.00 2.17
615 618 5.391310 CGTCCAATGAAATTTCAGTCCTCTG 60.391 44.000 24.17 10.67 41.08 3.35
648 834 3.258622 CCTGTAAAGGAAGAGAACGACCT 59.741 47.826 0.00 0.00 0.00 3.85
671 857 6.068616 CCTCTGATATCCCCCATTAATTCCAT 60.069 42.308 0.00 0.00 0.00 3.41
674 860 7.019457 TCTGATATCCCCCATTAATTCCATGAA 59.981 37.037 0.00 0.00 0.00 2.57
677 863 5.219468 TCCCCCATTAATTCCATGAACTT 57.781 39.130 0.00 0.00 0.00 2.66
686 872 8.810427 CATTAATTCCATGAACTTTGAATTCCG 58.190 33.333 2.27 0.00 38.17 4.30
688 874 4.764679 TCCATGAACTTTGAATTCCGTG 57.235 40.909 2.27 0.00 0.00 4.94
690 876 5.309638 TCCATGAACTTTGAATTCCGTGTA 58.690 37.500 2.27 0.00 0.00 2.90
714 900 1.630148 GACGATGTAGAAAGTGCGCT 58.370 50.000 9.73 0.00 0.00 5.92
718 904 2.611518 GATGTAGAAAGTGCGCTCTGT 58.388 47.619 13.48 7.42 0.00 3.41
729 915 1.226156 CGCTCTGTCGGAGAAGTCG 60.226 63.158 13.17 2.61 44.45 4.18
751 937 3.315418 GGAGAAAACGTGTGTACTCTCC 58.685 50.000 8.17 8.17 43.41 3.71
788 974 6.037940 GTCGTCTTCATTCTTAATTTACCCCC 59.962 42.308 0.00 0.00 0.00 5.40
860 1300 1.950216 GCTATCTGCTTTACCTTGCCC 59.050 52.381 0.00 0.00 38.95 5.36
861 1301 2.213499 CTATCTGCTTTACCTTGCCCG 58.787 52.381 0.00 0.00 0.00 6.13
862 1302 0.394352 ATCTGCTTTACCTTGCCCGG 60.394 55.000 0.00 0.00 0.00 5.73
863 1303 2.675075 TGCTTTACCTTGCCCGGC 60.675 61.111 1.04 1.04 0.00 6.13
915 1372 2.185350 CCGCGTGGCTCTGATCTT 59.815 61.111 0.00 0.00 0.00 2.40
1236 1747 4.083862 GCGACCCGGGCTTCTTCT 62.084 66.667 24.08 0.00 0.00 2.85
2120 2643 2.100631 GGACACGATGAACCTGCCG 61.101 63.158 0.00 0.00 0.00 5.69
2172 2695 2.237542 ATCAGCTGGATGGGCATGA 58.762 52.632 15.13 0.00 34.06 3.07
2402 2926 4.551410 GCATGCCGTAAATTAAGGACGTAC 60.551 45.833 6.36 0.00 34.81 3.67
2418 2942 1.540267 CGTACTCCTACACACACTGCT 59.460 52.381 0.00 0.00 0.00 4.24
2419 2943 2.668556 CGTACTCCTACACACACTGCTG 60.669 54.545 0.00 0.00 0.00 4.41
2420 2944 0.681733 ACTCCTACACACACTGCTGG 59.318 55.000 0.00 0.00 0.00 4.85
2421 2945 0.671781 CTCCTACACACACTGCTGGC 60.672 60.000 0.00 0.00 0.00 4.85
2422 2946 1.672356 CCTACACACACTGCTGGCC 60.672 63.158 0.00 0.00 0.00 5.36
2423 2947 1.372683 CTACACACACTGCTGGCCT 59.627 57.895 3.32 0.00 0.00 5.19
2424 2948 0.952497 CTACACACACTGCTGGCCTG 60.952 60.000 3.32 4.26 0.00 4.85
2425 2949 1.695114 TACACACACTGCTGGCCTGT 61.695 55.000 11.69 0.00 0.00 4.00
2541 3104 1.308069 ATGAACGTGTGGATGCTGCC 61.308 55.000 0.00 0.00 0.00 4.85
2549 3112 0.940126 GTGGATGCTGCCATCTTACG 59.060 55.000 0.00 0.00 45.73 3.18
2551 3114 1.221414 GGATGCTGCCATCTTACGAC 58.779 55.000 0.00 0.00 45.73 4.34
2552 3115 1.202580 GGATGCTGCCATCTTACGACT 60.203 52.381 0.00 0.00 45.73 4.18
2554 3117 2.472695 TGCTGCCATCTTACGACTTT 57.527 45.000 0.00 0.00 0.00 2.66
2555 3118 3.603158 TGCTGCCATCTTACGACTTTA 57.397 42.857 0.00 0.00 0.00 1.85
2556 3119 3.259064 TGCTGCCATCTTACGACTTTAC 58.741 45.455 0.00 0.00 0.00 2.01
2557 3120 2.281762 GCTGCCATCTTACGACTTTACG 59.718 50.000 0.00 0.00 39.31 3.18
2558 3121 3.766151 CTGCCATCTTACGACTTTACGA 58.234 45.455 0.00 0.00 37.03 3.43
2559 3122 3.766151 TGCCATCTTACGACTTTACGAG 58.234 45.455 0.00 0.00 37.03 4.18
2560 3123 3.441222 TGCCATCTTACGACTTTACGAGA 59.559 43.478 0.00 0.00 37.03 4.04
2563 3126 4.438336 CCATCTTACGACTTTACGAGAGCA 60.438 45.833 0.00 0.00 37.03 4.26
2578 3141 5.403246 ACGAGAGCAAGTGTAATAAGACTG 58.597 41.667 0.00 0.00 0.00 3.51
2612 3179 1.670811 GTTGGGCATGTGTAATCTCGG 59.329 52.381 0.00 0.00 0.00 4.63
2711 3401 4.143389 CCTTTTACACGTCGCTCTACTTTG 60.143 45.833 0.00 0.00 0.00 2.77
2724 3414 4.381079 GCTCTACTTTGAGATCTGGACGTT 60.381 45.833 0.00 0.00 36.23 3.99
2726 3417 2.417719 ACTTTGAGATCTGGACGTTGC 58.582 47.619 0.00 0.00 0.00 4.17
2779 5016 1.016627 GTGTGGCATCATGCGTATGT 58.983 50.000 13.39 0.00 46.21 2.29
2780 5017 1.015868 TGTGGCATCATGCGTATGTG 58.984 50.000 13.39 11.52 46.21 3.21
2818 5066 1.458588 TGGGCCATCATGCATGCAT 60.459 52.632 27.46 27.46 37.08 3.96
2829 5077 4.201679 CATGCATGCACCGGCCAG 62.202 66.667 25.37 3.26 40.13 4.85
2834 5082 4.790962 ATGCACCGGCCAGCTCAG 62.791 66.667 14.19 0.00 40.13 3.35
2863 5111 3.920093 GAGGGGGTTGGCAACGGAG 62.920 68.421 22.95 0.00 42.51 4.63
2865 5113 2.983592 GGGGTTGGCAACGGAGTG 60.984 66.667 22.95 0.00 45.00 3.51
2866 5114 2.983592 GGGTTGGCAACGGAGTGG 60.984 66.667 22.95 0.00 45.00 4.00
2881 5129 2.852075 TGGGGTGGAGTGGGTGTC 60.852 66.667 0.00 0.00 0.00 3.67
2899 5147 2.093500 TGTCCTCCTCACCAAATCGATG 60.093 50.000 0.00 0.00 0.00 3.84
2935 5183 0.463654 ATCGCCGCATGAAAAGCCTA 60.464 50.000 0.00 0.00 0.00 3.93
2939 5187 1.031571 CCGCATGAAAAGCCTAGGCA 61.032 55.000 34.70 15.08 44.88 4.75
2947 5195 2.124507 AAAGCCTAGGCAACCTGCGA 62.125 55.000 34.70 0.00 46.21 5.10
2992 5240 5.578776 GTCGGCATCATCATGATATACGTA 58.421 41.667 8.15 0.00 34.28 3.57
2993 5241 5.455849 GTCGGCATCATCATGATATACGTAC 59.544 44.000 8.15 6.22 34.28 3.67
3000 5248 4.514781 TCATGATATACGTACTGTGCCC 57.485 45.455 0.00 0.00 0.00 5.36
3032 5302 4.940463 AGCTACTTGTCGACACTGTTTAA 58.060 39.130 19.90 0.00 0.00 1.52
3039 5309 5.721876 TGTCGACACTGTTTAACGAAAAT 57.278 34.783 15.76 0.00 34.91 1.82
3059 5329 9.778993 CGAAAATAATGTTTCATTCTCTCATGT 57.221 29.630 0.00 0.00 37.35 3.21
3067 5337 8.853077 TGTTTCATTCTCTCATGTTATTCTGT 57.147 30.769 0.00 0.00 0.00 3.41
3068 5338 8.724229 TGTTTCATTCTCTCATGTTATTCTGTG 58.276 33.333 0.00 0.00 0.00 3.66
3069 5339 8.725148 GTTTCATTCTCTCATGTTATTCTGTGT 58.275 33.333 0.00 0.00 0.00 3.72
3070 5340 8.484641 TTCATTCTCTCATGTTATTCTGTGTC 57.515 34.615 0.00 0.00 0.00 3.67
3071 5341 7.044181 TCATTCTCTCATGTTATTCTGTGTCC 58.956 38.462 0.00 0.00 0.00 4.02
3072 5342 6.611613 TTCTCTCATGTTATTCTGTGTCCT 57.388 37.500 0.00 0.00 0.00 3.85
3073 5343 6.611613 TCTCTCATGTTATTCTGTGTCCTT 57.388 37.500 0.00 0.00 0.00 3.36
3074 5344 7.009179 TCTCTCATGTTATTCTGTGTCCTTT 57.991 36.000 0.00 0.00 0.00 3.11
3075 5345 7.453393 TCTCTCATGTTATTCTGTGTCCTTTT 58.547 34.615 0.00 0.00 0.00 2.27
3076 5346 7.604164 TCTCTCATGTTATTCTGTGTCCTTTTC 59.396 37.037 0.00 0.00 0.00 2.29
3077 5347 7.453393 TCTCATGTTATTCTGTGTCCTTTTCT 58.547 34.615 0.00 0.00 0.00 2.52
3078 5348 8.593679 TCTCATGTTATTCTGTGTCCTTTTCTA 58.406 33.333 0.00 0.00 0.00 2.10
3079 5349 9.219603 CTCATGTTATTCTGTGTCCTTTTCTAA 57.780 33.333 0.00 0.00 0.00 2.10
3080 5350 9.567776 TCATGTTATTCTGTGTCCTTTTCTAAA 57.432 29.630 0.00 0.00 0.00 1.85
3106 5376 8.712228 AAAAGGTTATTCATCTGTCCTTTTCT 57.288 30.769 12.12 0.00 45.81 2.52
3107 5377 9.807921 AAAAGGTTATTCATCTGTCCTTTTCTA 57.192 29.630 12.12 0.00 45.81 2.10
3108 5378 9.807921 AAAGGTTATTCATCTGTCCTTTTCTAA 57.192 29.630 0.00 0.00 40.79 2.10
3109 5379 9.807921 AAGGTTATTCATCTGTCCTTTTCTAAA 57.192 29.630 0.00 0.00 32.31 1.85
3110 5380 9.807921 AGGTTATTCATCTGTCCTTTTCTAAAA 57.192 29.630 0.00 0.00 0.00 1.52
3149 5419 6.489700 TGTGTATATGCTGGTCCCATAAATTG 59.510 38.462 0.00 0.00 0.00 2.32
3150 5420 5.476599 TGTATATGCTGGTCCCATAAATTGC 59.523 40.000 0.00 0.00 0.00 3.56
3151 5421 1.484038 TGCTGGTCCCATAAATTGCC 58.516 50.000 0.00 0.00 0.00 4.52
3152 5422 1.006998 TGCTGGTCCCATAAATTGCCT 59.993 47.619 0.00 0.00 0.00 4.75
3153 5423 2.243478 TGCTGGTCCCATAAATTGCCTA 59.757 45.455 0.00 0.00 0.00 3.93
3167 5437 1.050988 TGCCTATCCTGTGGAGGCTC 61.051 60.000 5.78 5.78 41.74 4.70
3179 5449 1.040339 GGAGGCTCGAGGACATGACT 61.040 60.000 15.58 0.00 0.00 3.41
3180 5450 0.820871 GAGGCTCGAGGACATGACTT 59.179 55.000 15.58 0.00 0.00 3.01
3210 5480 2.943036 GGTGTTTACCTGGTTGGAGA 57.057 50.000 3.84 0.00 43.97 3.71
3214 5484 4.698780 GGTGTTTACCTGGTTGGAGAATAC 59.301 45.833 3.84 1.94 43.97 1.89
3235 5506 7.678947 ATACAACAAGGAGATTTTCTGTCAG 57.321 36.000 0.00 0.00 0.00 3.51
3272 5543 3.236896 ACTTCTTCGGAAAGGACCTGTA 58.763 45.455 0.00 0.00 33.12 2.74
3360 5631 4.413969 TGCATGCGTCATGTTATTGAAAG 58.586 39.130 14.09 0.00 43.10 2.62
3368 5640 7.167302 TGCGTCATGTTATTGAAAGAAAACTTG 59.833 33.333 0.00 0.00 0.00 3.16
3371 5643 8.682016 GTCATGTTATTGAAAGAAAACTTGTCG 58.318 33.333 0.00 0.00 32.12 4.35
3388 5660 4.224715 TGTCGAAGCTCTTGTATATCCG 57.775 45.455 0.00 0.00 0.00 4.18
3389 5661 3.881089 TGTCGAAGCTCTTGTATATCCGA 59.119 43.478 0.00 0.00 0.00 4.55
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 9.827411 GCTTACTATGTTTACCTTTTTCTCTTG 57.173 33.333 0.00 0.00 0.00 3.02
3 4 9.740710 ATGCTTACTATGTTTACCTTTTTCTCT 57.259 29.630 0.00 0.00 0.00 3.10
5 6 8.739972 CCATGCTTACTATGTTTACCTTTTTCT 58.260 33.333 0.00 0.00 0.00 2.52
6 7 7.973944 CCCATGCTTACTATGTTTACCTTTTTC 59.026 37.037 0.00 0.00 0.00 2.29
8 9 6.951778 ACCCATGCTTACTATGTTTACCTTTT 59.048 34.615 0.00 0.00 0.00 2.27
9 10 6.377146 CACCCATGCTTACTATGTTTACCTTT 59.623 38.462 0.00 0.00 0.00 3.11
10 11 5.885912 CACCCATGCTTACTATGTTTACCTT 59.114 40.000 0.00 0.00 0.00 3.50
11 12 5.190925 TCACCCATGCTTACTATGTTTACCT 59.809 40.000 0.00 0.00 0.00 3.08
12 13 5.433526 TCACCCATGCTTACTATGTTTACC 58.566 41.667 0.00 0.00 0.00 2.85
13 14 6.995511 TTCACCCATGCTTACTATGTTTAC 57.004 37.500 0.00 0.00 0.00 2.01
14 15 9.337396 CTATTTCACCCATGCTTACTATGTTTA 57.663 33.333 0.00 0.00 0.00 2.01
15 16 7.834181 ACTATTTCACCCATGCTTACTATGTTT 59.166 33.333 0.00 0.00 0.00 2.83
16 17 7.346471 ACTATTTCACCCATGCTTACTATGTT 58.654 34.615 0.00 0.00 0.00 2.71
17 18 6.900194 ACTATTTCACCCATGCTTACTATGT 58.100 36.000 0.00 0.00 0.00 2.29
18 19 7.220030 AGACTATTTCACCCATGCTTACTATG 58.780 38.462 0.00 0.00 0.00 2.23
19 20 7.071196 TGAGACTATTTCACCCATGCTTACTAT 59.929 37.037 0.00 0.00 0.00 2.12
20 21 6.382859 TGAGACTATTTCACCCATGCTTACTA 59.617 38.462 0.00 0.00 0.00 1.82
21 22 5.189736 TGAGACTATTTCACCCATGCTTACT 59.810 40.000 0.00 0.00 0.00 2.24
22 23 5.428253 TGAGACTATTTCACCCATGCTTAC 58.572 41.667 0.00 0.00 0.00 2.34
23 24 5.692115 TGAGACTATTTCACCCATGCTTA 57.308 39.130 0.00 0.00 0.00 3.09
24 25 4.574674 TGAGACTATTTCACCCATGCTT 57.425 40.909 0.00 0.00 0.00 3.91
25 26 4.521146 CTTGAGACTATTTCACCCATGCT 58.479 43.478 0.00 0.00 0.00 3.79
26 27 3.065925 GCTTGAGACTATTTCACCCATGC 59.934 47.826 0.00 0.00 0.00 4.06
27 28 4.264253 TGCTTGAGACTATTTCACCCATG 58.736 43.478 0.00 0.00 0.00 3.66
28 29 4.018960 ACTGCTTGAGACTATTTCACCCAT 60.019 41.667 0.00 0.00 0.00 4.00
29 30 3.327757 ACTGCTTGAGACTATTTCACCCA 59.672 43.478 0.00 0.00 0.00 4.51
30 31 3.686726 CACTGCTTGAGACTATTTCACCC 59.313 47.826 0.00 0.00 0.00 4.61
31 32 3.686726 CCACTGCTTGAGACTATTTCACC 59.313 47.826 0.00 0.00 0.00 4.02
32 33 3.126000 GCCACTGCTTGAGACTATTTCAC 59.874 47.826 0.00 0.00 33.53 3.18
33 34 3.338249 GCCACTGCTTGAGACTATTTCA 58.662 45.455 0.00 0.00 33.53 2.69
34 35 2.349886 CGCCACTGCTTGAGACTATTTC 59.650 50.000 0.00 0.00 34.43 2.17
35 36 2.289694 ACGCCACTGCTTGAGACTATTT 60.290 45.455 0.00 0.00 34.43 1.40
36 37 1.276421 ACGCCACTGCTTGAGACTATT 59.724 47.619 0.00 0.00 34.43 1.73
37 38 0.898320 ACGCCACTGCTTGAGACTAT 59.102 50.000 0.00 0.00 34.43 2.12
38 39 1.541379 TACGCCACTGCTTGAGACTA 58.459 50.000 0.00 0.00 34.43 2.59
39 40 0.898320 ATACGCCACTGCTTGAGACT 59.102 50.000 0.00 0.00 34.43 3.24
40 41 1.134965 AGATACGCCACTGCTTGAGAC 60.135 52.381 0.00 0.00 34.43 3.36
41 42 1.186200 AGATACGCCACTGCTTGAGA 58.814 50.000 0.00 0.00 34.43 3.27
42 43 2.544694 CCTAGATACGCCACTGCTTGAG 60.545 54.545 0.00 0.00 34.43 3.02
43 44 1.409064 CCTAGATACGCCACTGCTTGA 59.591 52.381 0.00 0.00 34.43 3.02
44 45 1.539065 CCCTAGATACGCCACTGCTTG 60.539 57.143 0.00 0.00 34.43 4.01
45 46 0.753262 CCCTAGATACGCCACTGCTT 59.247 55.000 0.00 0.00 34.43 3.91
46 47 1.115930 CCCCTAGATACGCCACTGCT 61.116 60.000 0.00 0.00 34.43 4.24
47 48 1.367840 CCCCTAGATACGCCACTGC 59.632 63.158 0.00 0.00 0.00 4.40
48 49 0.759436 ACCCCCTAGATACGCCACTG 60.759 60.000 0.00 0.00 0.00 3.66
49 50 0.759436 CACCCCCTAGATACGCCACT 60.759 60.000 0.00 0.00 0.00 4.00
50 51 1.746517 CACCCCCTAGATACGCCAC 59.253 63.158 0.00 0.00 0.00 5.01
51 52 1.458777 CCACCCCCTAGATACGCCA 60.459 63.158 0.00 0.00 0.00 5.69
52 53 1.152398 TCCACCCCCTAGATACGCC 60.152 63.158 0.00 0.00 0.00 5.68
53 54 0.757935 TGTCCACCCCCTAGATACGC 60.758 60.000 0.00 0.00 0.00 4.42
54 55 1.329256 CTGTCCACCCCCTAGATACG 58.671 60.000 0.00 0.00 0.00 3.06
55 56 1.718280 CCTGTCCACCCCCTAGATAC 58.282 60.000 0.00 0.00 0.00 2.24
56 57 0.566176 CCCTGTCCACCCCCTAGATA 59.434 60.000 0.00 0.00 0.00 1.98
57 58 1.318380 CCCTGTCCACCCCCTAGAT 59.682 63.158 0.00 0.00 0.00 1.98
58 59 2.181773 ACCCTGTCCACCCCCTAGA 61.182 63.158 0.00 0.00 0.00 2.43
59 60 1.995626 CACCCTGTCCACCCCCTAG 60.996 68.421 0.00 0.00 0.00 3.02
60 61 2.124085 CACCCTGTCCACCCCCTA 59.876 66.667 0.00 0.00 0.00 3.53
63 64 3.647771 GACCACCCTGTCCACCCC 61.648 72.222 0.00 0.00 0.00 4.95
69 70 1.299976 GTCCATGGACCACCCTGTC 59.700 63.158 31.37 5.53 39.08 3.51
70 71 3.495729 GTCCATGGACCACCCTGT 58.504 61.111 31.37 0.00 39.08 4.00
81 82 2.102578 GAAATTCCAGGGTGGTCCATG 58.897 52.381 0.00 0.00 44.12 3.66
82 83 1.007118 GGAAATTCCAGGGTGGTCCAT 59.993 52.381 7.23 0.00 39.03 3.41
83 84 0.407918 GGAAATTCCAGGGTGGTCCA 59.592 55.000 7.23 0.00 39.03 4.02
84 85 0.324368 GGGAAATTCCAGGGTGGTCC 60.324 60.000 14.68 0.00 38.64 4.46
85 86 0.324368 GGGGAAATTCCAGGGTGGTC 60.324 60.000 14.68 0.00 38.64 4.02
86 87 1.077298 TGGGGAAATTCCAGGGTGGT 61.077 55.000 14.68 0.00 38.64 4.16
87 88 0.339510 ATGGGGAAATTCCAGGGTGG 59.660 55.000 14.68 0.00 38.64 4.61
88 89 3.396685 TTATGGGGAAATTCCAGGGTG 57.603 47.619 14.68 0.00 38.64 4.61
89 90 3.799578 AGATTATGGGGAAATTCCAGGGT 59.200 43.478 14.68 0.00 38.64 4.34
90 91 4.475919 AGATTATGGGGAAATTCCAGGG 57.524 45.455 14.68 0.00 38.64 4.45
92 93 9.566432 GCTATATAGATTATGGGGAAATTCCAG 57.434 37.037 14.68 0.00 38.64 3.86
93 94 9.067963 TGCTATATAGATTATGGGGAAATTCCA 57.932 33.333 14.68 0.00 38.64 3.53
154 155 9.111613 CCACCAATGCAAAATATTCACATAAAT 57.888 29.630 0.00 0.00 0.00 1.40
155 156 8.316946 TCCACCAATGCAAAATATTCACATAAA 58.683 29.630 0.00 0.00 0.00 1.40
156 157 7.763528 GTCCACCAATGCAAAATATTCACATAA 59.236 33.333 0.00 0.00 0.00 1.90
157 158 7.264221 GTCCACCAATGCAAAATATTCACATA 58.736 34.615 0.00 0.00 0.00 2.29
158 159 6.108015 GTCCACCAATGCAAAATATTCACAT 58.892 36.000 0.00 0.00 0.00 3.21
159 160 5.477510 GTCCACCAATGCAAAATATTCACA 58.522 37.500 0.00 0.00 0.00 3.58
160 161 4.869861 GGTCCACCAATGCAAAATATTCAC 59.130 41.667 0.00 0.00 35.64 3.18
161 162 4.529769 TGGTCCACCAATGCAAAATATTCA 59.470 37.500 0.00 0.00 44.35 2.57
162 163 5.083533 TGGTCCACCAATGCAAAATATTC 57.916 39.130 0.00 0.00 44.35 1.75
177 178 2.361610 CATGCCAGGGTGGTCCAC 60.362 66.667 14.13 14.13 40.46 4.02
178 179 2.468868 AACATGCCAGGGTGGTCCA 61.469 57.895 0.00 0.00 40.46 4.02
179 180 1.978617 CAACATGCCAGGGTGGTCC 60.979 63.158 0.00 0.00 40.46 4.46
180 181 1.978617 CCAACATGCCAGGGTGGTC 60.979 63.158 4.99 0.00 40.46 4.02
181 182 2.118076 CCAACATGCCAGGGTGGT 59.882 61.111 4.99 0.00 40.46 4.16
182 183 2.681064 CCCAACATGCCAGGGTGG 60.681 66.667 6.42 6.42 41.55 4.61
183 184 2.497792 TAGCCCAACATGCCAGGGTG 62.498 60.000 16.46 0.00 44.69 4.61
184 185 2.215451 CTAGCCCAACATGCCAGGGT 62.215 60.000 16.46 11.28 44.69 4.34
185 186 1.454479 CTAGCCCAACATGCCAGGG 60.454 63.158 12.20 12.20 45.68 4.45
186 187 2.123428 GCTAGCCCAACATGCCAGG 61.123 63.158 2.29 0.00 0.00 4.45
187 188 0.181114 TAGCTAGCCCAACATGCCAG 59.819 55.000 12.13 0.00 0.00 4.85
188 189 0.107214 GTAGCTAGCCCAACATGCCA 60.107 55.000 12.13 0.00 0.00 4.92
189 190 1.160329 CGTAGCTAGCCCAACATGCC 61.160 60.000 12.13 0.00 0.00 4.40
190 191 2.311294 CGTAGCTAGCCCAACATGC 58.689 57.895 12.13 0.00 0.00 4.06
204 205 0.737715 GCTTGAGACCAGTGGCGTAG 60.738 60.000 9.78 1.05 0.00 3.51
205 206 1.292223 GCTTGAGACCAGTGGCGTA 59.708 57.895 9.78 0.00 0.00 4.42
206 207 2.031163 GCTTGAGACCAGTGGCGT 59.969 61.111 9.78 0.00 0.00 5.68
207 208 2.743928 GGCTTGAGACCAGTGGCG 60.744 66.667 9.78 0.00 0.00 5.69
208 209 1.001641 ATGGCTTGAGACCAGTGGC 60.002 57.895 9.78 1.85 41.46 5.01
209 210 0.325933 TCATGGCTTGAGACCAGTGG 59.674 55.000 7.91 7.91 41.46 4.00
210 211 2.414994 ATCATGGCTTGAGACCAGTG 57.585 50.000 9.09 0.00 41.46 3.66
211 212 4.574674 TTTATCATGGCTTGAGACCAGT 57.425 40.909 9.09 0.00 41.46 4.00
212 213 5.591472 TCATTTTATCATGGCTTGAGACCAG 59.409 40.000 9.09 0.00 41.46 4.00
213 214 5.508567 TCATTTTATCATGGCTTGAGACCA 58.491 37.500 9.09 0.00 42.61 4.02
214 215 6.455360 TTCATTTTATCATGGCTTGAGACC 57.545 37.500 9.09 0.00 37.89 3.85
215 216 8.814235 CAATTTCATTTTATCATGGCTTGAGAC 58.186 33.333 9.09 0.00 37.89 3.36
216 217 7.493320 GCAATTTCATTTTATCATGGCTTGAGA 59.507 33.333 9.09 1.29 37.89 3.27
217 218 7.279090 TGCAATTTCATTTTATCATGGCTTGAG 59.721 33.333 9.09 0.00 37.89 3.02
218 219 7.104290 TGCAATTTCATTTTATCATGGCTTGA 58.896 30.769 5.47 5.47 39.12 3.02
219 220 7.310072 TGCAATTTCATTTTATCATGGCTTG 57.690 32.000 0.00 0.00 0.00 4.01
220 221 7.925043 TTGCAATTTCATTTTATCATGGCTT 57.075 28.000 0.00 0.00 0.00 4.35
221 222 9.048446 GTATTGCAATTTCATTTTATCATGGCT 57.952 29.630 18.75 0.00 0.00 4.75
222 223 8.005466 CGTATTGCAATTTCATTTTATCATGGC 58.995 33.333 18.75 0.00 0.00 4.40
223 224 8.489559 CCGTATTGCAATTTCATTTTATCATGG 58.510 33.333 18.75 5.80 0.00 3.66
224 225 8.005466 GCCGTATTGCAATTTCATTTTATCATG 58.995 33.333 18.75 0.03 0.00 3.07
225 226 7.171337 GGCCGTATTGCAATTTCATTTTATCAT 59.829 33.333 18.75 0.00 0.00 2.45
226 227 6.478344 GGCCGTATTGCAATTTCATTTTATCA 59.522 34.615 18.75 0.00 0.00 2.15
227 228 6.478344 TGGCCGTATTGCAATTTCATTTTATC 59.522 34.615 18.75 0.00 0.00 1.75
228 229 6.344500 TGGCCGTATTGCAATTTCATTTTAT 58.656 32.000 18.75 0.00 0.00 1.40
229 230 5.724328 TGGCCGTATTGCAATTTCATTTTA 58.276 33.333 18.75 0.00 0.00 1.52
230 231 4.573900 TGGCCGTATTGCAATTTCATTTT 58.426 34.783 18.75 0.00 0.00 1.82
231 232 4.199432 TGGCCGTATTGCAATTTCATTT 57.801 36.364 18.75 0.00 0.00 2.32
232 233 3.883830 TGGCCGTATTGCAATTTCATT 57.116 38.095 18.75 0.00 0.00 2.57
233 234 3.883830 TTGGCCGTATTGCAATTTCAT 57.116 38.095 18.75 0.00 0.00 2.57
234 235 3.667497 TTTGGCCGTATTGCAATTTCA 57.333 38.095 18.75 6.52 0.00 2.69
235 236 3.370672 CCTTTTGGCCGTATTGCAATTTC 59.629 43.478 18.75 10.39 0.00 2.17
236 237 3.244387 ACCTTTTGGCCGTATTGCAATTT 60.244 39.130 18.75 0.00 45.59 1.82
237 238 2.301583 ACCTTTTGGCCGTATTGCAATT 59.698 40.909 18.75 1.81 45.59 2.32
238 239 1.899142 ACCTTTTGGCCGTATTGCAAT 59.101 42.857 17.56 17.56 45.59 3.56
239 240 1.333177 ACCTTTTGGCCGTATTGCAA 58.667 45.000 0.00 0.00 45.59 4.08
240 241 2.088423 CTACCTTTTGGCCGTATTGCA 58.912 47.619 0.00 0.00 45.59 4.08
241 242 2.096980 GTCTACCTTTTGGCCGTATTGC 59.903 50.000 0.00 0.00 45.59 3.56
242 243 2.350498 CGTCTACCTTTTGGCCGTATTG 59.650 50.000 0.00 0.00 45.59 1.90
243 244 2.624636 CGTCTACCTTTTGGCCGTATT 58.375 47.619 0.00 0.00 45.59 1.89
244 245 1.134610 CCGTCTACCTTTTGGCCGTAT 60.135 52.381 0.00 0.00 45.59 3.06
245 246 0.247185 CCGTCTACCTTTTGGCCGTA 59.753 55.000 0.00 0.00 45.59 4.02
246 247 1.004200 CCGTCTACCTTTTGGCCGT 60.004 57.895 0.00 0.00 45.59 5.68
247 248 0.739813 CTCCGTCTACCTTTTGGCCG 60.740 60.000 0.00 0.00 45.59 6.13
248 249 0.611714 TCTCCGTCTACCTTTTGGCC 59.388 55.000 0.00 0.00 45.59 5.36
249 250 2.693267 ATCTCCGTCTACCTTTTGGC 57.307 50.000 0.00 0.00 45.59 4.52
251 252 7.321153 TCTTTTCTATCTCCGTCTACCTTTTG 58.679 38.462 0.00 0.00 0.00 2.44
252 253 7.477945 TCTTTTCTATCTCCGTCTACCTTTT 57.522 36.000 0.00 0.00 0.00 2.27
253 254 7.468906 CGATCTTTTCTATCTCCGTCTACCTTT 60.469 40.741 0.00 0.00 0.00 3.11
254 255 6.016943 CGATCTTTTCTATCTCCGTCTACCTT 60.017 42.308 0.00 0.00 0.00 3.50
255 256 5.470777 CGATCTTTTCTATCTCCGTCTACCT 59.529 44.000 0.00 0.00 0.00 3.08
256 257 5.335035 CCGATCTTTTCTATCTCCGTCTACC 60.335 48.000 0.00 0.00 0.00 3.18
257 258 5.335035 CCCGATCTTTTCTATCTCCGTCTAC 60.335 48.000 0.00 0.00 0.00 2.59
258 259 4.760715 CCCGATCTTTTCTATCTCCGTCTA 59.239 45.833 0.00 0.00 0.00 2.59
259 260 3.570550 CCCGATCTTTTCTATCTCCGTCT 59.429 47.826 0.00 0.00 0.00 4.18
260 261 3.857756 GCCCGATCTTTTCTATCTCCGTC 60.858 52.174 0.00 0.00 0.00 4.79
261 262 2.036089 GCCCGATCTTTTCTATCTCCGT 59.964 50.000 0.00 0.00 0.00 4.69
262 263 2.035961 TGCCCGATCTTTTCTATCTCCG 59.964 50.000 0.00 0.00 0.00 4.63
263 264 3.070302 AGTGCCCGATCTTTTCTATCTCC 59.930 47.826 0.00 0.00 0.00 3.71
264 265 4.329462 AGTGCCCGATCTTTTCTATCTC 57.671 45.455 0.00 0.00 0.00 2.75
265 266 6.722129 ACTATAGTGCCCGATCTTTTCTATCT 59.278 38.462 4.10 0.00 0.00 1.98
266 267 6.926313 ACTATAGTGCCCGATCTTTTCTATC 58.074 40.000 4.10 0.00 0.00 2.08
267 268 6.919775 ACTATAGTGCCCGATCTTTTCTAT 57.080 37.500 4.10 0.00 0.00 1.98
268 269 6.726490 AACTATAGTGCCCGATCTTTTCTA 57.274 37.500 6.06 0.00 0.00 2.10
269 270 5.615925 AACTATAGTGCCCGATCTTTTCT 57.384 39.130 6.06 0.00 0.00 2.52
270 271 6.679327 AAAACTATAGTGCCCGATCTTTTC 57.321 37.500 6.06 0.00 0.00 2.29
271 272 6.260271 GCTAAAACTATAGTGCCCGATCTTTT 59.740 38.462 6.06 2.69 0.00 2.27
272 273 5.758784 GCTAAAACTATAGTGCCCGATCTTT 59.241 40.000 6.06 3.39 0.00 2.52
273 274 5.298347 GCTAAAACTATAGTGCCCGATCTT 58.702 41.667 6.06 0.00 0.00 2.40
274 275 4.558898 CGCTAAAACTATAGTGCCCGATCT 60.559 45.833 6.06 0.00 0.00 2.75
275 276 3.673809 CGCTAAAACTATAGTGCCCGATC 59.326 47.826 6.06 0.00 0.00 3.69
276 277 3.069158 ACGCTAAAACTATAGTGCCCGAT 59.931 43.478 6.06 0.00 36.99 4.18
277 278 2.428171 ACGCTAAAACTATAGTGCCCGA 59.572 45.455 6.06 0.00 36.99 5.14
278 279 2.538449 CACGCTAAAACTATAGTGCCCG 59.462 50.000 6.06 7.93 36.99 6.13
279 280 3.528532 ACACGCTAAAACTATAGTGCCC 58.471 45.455 6.06 0.00 36.99 5.36
280 281 5.585390 TCTACACGCTAAAACTATAGTGCC 58.415 41.667 6.06 0.00 36.99 5.01
281 282 8.792831 TTATCTACACGCTAAAACTATAGTGC 57.207 34.615 6.06 4.51 36.99 4.40
287 288 9.512435 GAGACAATTATCTACACGCTAAAACTA 57.488 33.333 0.00 0.00 0.00 2.24
288 289 8.251721 AGAGACAATTATCTACACGCTAAAACT 58.748 33.333 0.00 0.00 0.00 2.66
289 290 8.408743 AGAGACAATTATCTACACGCTAAAAC 57.591 34.615 0.00 0.00 0.00 2.43
290 291 8.467598 AGAGAGACAATTATCTACACGCTAAAA 58.532 33.333 0.00 0.00 0.00 1.52
291 292 7.997482 AGAGAGACAATTATCTACACGCTAAA 58.003 34.615 0.00 0.00 0.00 1.85
292 293 7.569639 AGAGAGACAATTATCTACACGCTAA 57.430 36.000 0.00 0.00 0.00 3.09
293 294 8.148999 TCTAGAGAGACAATTATCTACACGCTA 58.851 37.037 0.00 0.00 0.00 4.26
294 295 6.993308 TCTAGAGAGACAATTATCTACACGCT 59.007 38.462 0.00 0.00 0.00 5.07
295 296 7.192148 TCTAGAGAGACAATTATCTACACGC 57.808 40.000 0.00 0.00 0.00 5.34
296 297 9.605955 CAATCTAGAGAGACAATTATCTACACG 57.394 37.037 0.00 0.00 33.41 4.49
299 300 9.840427 GCTCAATCTAGAGAGACAATTATCTAC 57.160 37.037 12.08 0.00 37.87 2.59
300 301 8.726068 CGCTCAATCTAGAGAGACAATTATCTA 58.274 37.037 12.08 0.00 37.60 1.98
301 302 7.309133 CCGCTCAATCTAGAGAGACAATTATCT 60.309 40.741 12.08 0.00 37.60 1.98
302 303 6.806249 CCGCTCAATCTAGAGAGACAATTATC 59.194 42.308 12.08 0.00 37.60 1.75
303 304 6.266558 ACCGCTCAATCTAGAGAGACAATTAT 59.733 38.462 12.08 0.00 37.60 1.28
304 305 5.594725 ACCGCTCAATCTAGAGAGACAATTA 59.405 40.000 12.08 0.00 37.60 1.40
305 306 4.404073 ACCGCTCAATCTAGAGAGACAATT 59.596 41.667 12.08 0.00 37.60 2.32
306 307 3.957497 ACCGCTCAATCTAGAGAGACAAT 59.043 43.478 12.08 0.00 37.60 2.71
307 308 3.129462 CACCGCTCAATCTAGAGAGACAA 59.871 47.826 12.08 0.00 37.60 3.18
308 309 2.685388 CACCGCTCAATCTAGAGAGACA 59.315 50.000 12.08 0.00 37.60 3.41
309 310 2.685897 ACACCGCTCAATCTAGAGAGAC 59.314 50.000 12.08 4.12 37.60 3.36
310 311 3.006112 ACACCGCTCAATCTAGAGAGA 57.994 47.619 12.08 5.20 37.60 3.10
311 312 3.628032 TGTACACCGCTCAATCTAGAGAG 59.372 47.826 0.00 1.44 37.87 3.20
312 313 3.617284 TGTACACCGCTCAATCTAGAGA 58.383 45.455 0.00 0.00 37.87 3.10
313 314 4.371855 TTGTACACCGCTCAATCTAGAG 57.628 45.455 0.00 0.00 38.68 2.43
314 315 4.159693 ACATTGTACACCGCTCAATCTAGA 59.840 41.667 0.00 0.00 30.74 2.43
315 316 4.433615 ACATTGTACACCGCTCAATCTAG 58.566 43.478 0.00 0.00 30.74 2.43
316 317 4.159693 AGACATTGTACACCGCTCAATCTA 59.840 41.667 0.00 0.00 30.74 1.98
317 318 3.055819 AGACATTGTACACCGCTCAATCT 60.056 43.478 0.00 0.00 30.74 2.40
318 319 3.262420 AGACATTGTACACCGCTCAATC 58.738 45.455 0.00 0.00 30.74 2.67
319 320 3.262420 GAGACATTGTACACCGCTCAAT 58.738 45.455 0.00 0.00 32.93 2.57
320 321 2.683968 GAGACATTGTACACCGCTCAA 58.316 47.619 0.00 0.00 0.00 3.02
321 322 1.402325 CGAGACATTGTACACCGCTCA 60.402 52.381 0.00 0.00 0.00 4.26
322 323 1.269166 CGAGACATTGTACACCGCTC 58.731 55.000 0.00 0.00 0.00 5.03
323 324 0.736325 GCGAGACATTGTACACCGCT 60.736 55.000 0.00 0.00 38.36 5.52
324 325 0.736325 AGCGAGACATTGTACACCGC 60.736 55.000 0.00 13.20 41.22 5.68
325 326 2.554806 TAGCGAGACATTGTACACCG 57.445 50.000 0.00 0.00 0.00 4.94
326 327 5.808540 TGTTATTAGCGAGACATTGTACACC 59.191 40.000 0.00 0.00 0.00 4.16
327 328 6.505888 CGTGTTATTAGCGAGACATTGTACAC 60.506 42.308 0.00 0.00 0.00 2.90
328 329 5.513849 CGTGTTATTAGCGAGACATTGTACA 59.486 40.000 0.00 0.00 0.00 2.90
329 330 5.553952 GCGTGTTATTAGCGAGACATTGTAC 60.554 44.000 0.00 0.00 0.00 2.90
330 331 4.501559 GCGTGTTATTAGCGAGACATTGTA 59.498 41.667 0.00 0.00 0.00 2.41
331 332 3.306166 GCGTGTTATTAGCGAGACATTGT 59.694 43.478 0.00 0.00 0.00 2.71
332 333 3.551890 AGCGTGTTATTAGCGAGACATTG 59.448 43.478 0.00 0.00 35.78 2.82
333 334 3.782046 AGCGTGTTATTAGCGAGACATT 58.218 40.909 0.00 0.00 35.78 2.71
334 335 3.438297 AGCGTGTTATTAGCGAGACAT 57.562 42.857 0.00 0.00 35.78 3.06
335 336 2.933495 AGCGTGTTATTAGCGAGACA 57.067 45.000 0.00 0.00 35.78 3.41
336 337 5.911280 TGTTATAGCGTGTTATTAGCGAGAC 59.089 40.000 0.00 0.00 35.78 3.36
337 338 6.063640 TGTTATAGCGTGTTATTAGCGAGA 57.936 37.500 0.00 0.00 35.78 4.04
338 339 6.929587 ATGTTATAGCGTGTTATTAGCGAG 57.070 37.500 0.00 0.00 35.78 5.03
339 340 8.975410 AATATGTTATAGCGTGTTATTAGCGA 57.025 30.769 0.00 0.00 35.78 4.93
344 345 9.858247 CGTGAAAATATGTTATAGCGTGTTATT 57.142 29.630 0.00 0.00 0.00 1.40
345 346 8.492748 CCGTGAAAATATGTTATAGCGTGTTAT 58.507 33.333 0.00 0.00 0.00 1.89
346 347 7.705752 TCCGTGAAAATATGTTATAGCGTGTTA 59.294 33.333 0.00 0.00 0.00 2.41
347 348 6.535865 TCCGTGAAAATATGTTATAGCGTGTT 59.464 34.615 0.00 0.00 0.00 3.32
348 349 6.019318 GTCCGTGAAAATATGTTATAGCGTGT 60.019 38.462 0.00 0.00 0.00 4.49
349 350 6.352526 GTCCGTGAAAATATGTTATAGCGTG 58.647 40.000 0.00 0.00 0.00 5.34
354 355 4.445052 CGCCGTCCGTGAAAATATGTTATA 59.555 41.667 0.00 0.00 0.00 0.98
406 407 0.321564 TGAAACGATGACCTGGCAGG 60.322 55.000 31.62 31.62 42.49 4.85
407 408 1.081892 CTGAAACGATGACCTGGCAG 58.918 55.000 7.75 7.75 0.00 4.85
408 409 0.684535 TCTGAAACGATGACCTGGCA 59.315 50.000 0.00 0.00 0.00 4.92
409 410 1.808411 TTCTGAAACGATGACCTGGC 58.192 50.000 0.00 0.00 0.00 4.85
410 411 2.604914 CGATTCTGAAACGATGACCTGG 59.395 50.000 13.89 0.00 0.00 4.45
411 412 3.254060 ACGATTCTGAAACGATGACCTG 58.746 45.455 23.80 0.00 0.00 4.00
412 413 3.594603 ACGATTCTGAAACGATGACCT 57.405 42.857 23.80 0.49 0.00 3.85
413 414 3.927142 AGAACGATTCTGAAACGATGACC 59.073 43.478 23.80 9.39 38.91 4.02
443 444 1.656095 CAAGATTCGCTCAGTTCGGTC 59.344 52.381 0.00 0.00 0.00 4.79
455 456 7.922505 TGGTTAAAATTTGTGTCAAGATTCG 57.077 32.000 0.00 0.00 0.00 3.34
472 473 5.060506 TCGCTTGATTGAGACTTGGTTAAA 58.939 37.500 0.00 0.00 0.00 1.52
529 530 7.793888 GGAGATTCGTGCAAATTTTTCTTTTTC 59.206 33.333 0.00 0.00 0.00 2.29
536 538 2.986479 GCGGAGATTCGTGCAAATTTTT 59.014 40.909 0.00 0.00 0.00 1.94
539 541 0.096976 CGCGGAGATTCGTGCAAATT 59.903 50.000 0.00 0.00 33.89 1.82
559 561 1.308783 TTGCACAACGGTGTTGCTCA 61.309 50.000 22.44 9.31 46.95 4.26
603 605 2.367567 AGTTTACGGCAGAGGACTGAAA 59.632 45.455 0.00 0.00 46.03 2.69
648 834 6.508561 TCATGGAATTAATGGGGGATATCAGA 59.491 38.462 4.83 0.00 0.00 3.27
671 857 6.774354 GTAGTACACGGAATTCAAAGTTCA 57.226 37.500 7.93 0.00 0.00 3.18
686 872 5.731723 CACTTTCTACATCGTCGTAGTACAC 59.268 44.000 11.83 0.00 39.92 2.90
688 874 4.727655 GCACTTTCTACATCGTCGTAGTAC 59.272 45.833 11.83 0.00 39.92 2.73
690 876 3.727079 CGCACTTTCTACATCGTCGTAGT 60.727 47.826 11.83 0.00 39.92 2.73
714 900 0.677098 CTCCCGACTTCTCCGACAGA 60.677 60.000 0.00 0.00 0.00 3.41
718 904 1.271656 GTTTTCTCCCGACTTCTCCGA 59.728 52.381 0.00 0.00 0.00 4.55
729 915 3.315418 GAGAGTACACACGTTTTCTCCC 58.685 50.000 0.00 0.00 31.87 4.30
751 937 0.311165 AAGACGACGACTGGACACTG 59.689 55.000 0.00 0.00 0.00 3.66
788 974 0.732571 GTCTCTCTCACTCTCCTGCG 59.267 60.000 0.00 0.00 0.00 5.18
794 980 0.037590 AGGCGTGTCTCTCTCACTCT 59.962 55.000 0.00 0.00 34.14 3.24
795 981 1.740297 TAGGCGTGTCTCTCTCACTC 58.260 55.000 0.00 0.00 34.14 3.51
796 982 2.201921 TTAGGCGTGTCTCTCTCACT 57.798 50.000 0.00 0.00 34.14 3.41
797 983 2.423892 TGATTAGGCGTGTCTCTCTCAC 59.576 50.000 0.00 0.00 0.00 3.51
798 984 2.723273 TGATTAGGCGTGTCTCTCTCA 58.277 47.619 0.00 0.00 0.00 3.27
862 1302 4.397832 TGGTAAAGACGGCCGGGC 62.398 66.667 31.76 20.04 0.00 6.13
863 1303 2.125269 CTGGTAAAGACGGCCGGG 60.125 66.667 31.76 2.28 0.00 5.73
907 1364 1.272212 TGCGCTGTACACAAGATCAGA 59.728 47.619 9.73 0.00 0.00 3.27
908 1365 1.713597 TGCGCTGTACACAAGATCAG 58.286 50.000 9.73 0.00 0.00 2.90
909 1366 2.162319 TTGCGCTGTACACAAGATCA 57.838 45.000 9.73 0.00 0.00 2.92
910 1367 3.419915 CATTTGCGCTGTACACAAGATC 58.580 45.455 9.73 0.00 0.00 2.75
911 1368 2.414559 GCATTTGCGCTGTACACAAGAT 60.415 45.455 9.73 0.00 0.00 2.40
915 1372 1.169034 TGGCATTTGCGCTGTACACA 61.169 50.000 9.73 0.00 43.26 3.72
1946 2469 2.357760 GCGTTGCCGAAGTACCCA 60.358 61.111 0.00 0.00 35.63 4.51
2402 2926 0.671781 GCCAGCAGTGTGTGTAGGAG 60.672 60.000 0.00 0.00 0.00 3.69
2424 2948 1.334960 GGTATACGCATGCATGGCAAC 60.335 52.381 27.34 10.17 43.62 4.17
2425 2949 0.950836 GGTATACGCATGCATGGCAA 59.049 50.000 27.34 11.17 43.62 4.52
2503 3028 7.979537 ACGTTCATATTCACATACACATGTAGT 59.020 33.333 0.00 1.92 43.73 2.73
2504 3029 8.268738 CACGTTCATATTCACATACACATGTAG 58.731 37.037 0.00 0.00 43.73 2.74
2549 3112 7.754027 TCTTATTACACTTGCTCTCGTAAAGTC 59.246 37.037 0.00 0.00 31.88 3.01
2551 3114 7.755822 AGTCTTATTACACTTGCTCTCGTAAAG 59.244 37.037 0.00 0.00 0.00 1.85
2552 3115 7.541091 CAGTCTTATTACACTTGCTCTCGTAAA 59.459 37.037 0.00 0.00 0.00 2.01
2554 3117 6.404403 CCAGTCTTATTACACTTGCTCTCGTA 60.404 42.308 0.00 0.00 0.00 3.43
2555 3118 5.403246 CAGTCTTATTACACTTGCTCTCGT 58.597 41.667 0.00 0.00 0.00 4.18
2556 3119 4.800993 CCAGTCTTATTACACTTGCTCTCG 59.199 45.833 0.00 0.00 0.00 4.04
2557 3120 5.967088 TCCAGTCTTATTACACTTGCTCTC 58.033 41.667 0.00 0.00 0.00 3.20
2558 3121 5.717178 TCTCCAGTCTTATTACACTTGCTCT 59.283 40.000 0.00 0.00 0.00 4.09
2559 3122 5.967088 TCTCCAGTCTTATTACACTTGCTC 58.033 41.667 0.00 0.00 0.00 4.26
2560 3123 6.360370 TTCTCCAGTCTTATTACACTTGCT 57.640 37.500 0.00 0.00 0.00 3.91
2578 3141 3.631250 TGCCCAACTCCAATATTTCTCC 58.369 45.455 0.00 0.00 0.00 3.71
2592 3159 1.670811 CCGAGATTACACATGCCCAAC 59.329 52.381 0.00 0.00 0.00 3.77
2612 3179 4.073293 AGCTAGCTAGAGAGACTGAGAC 57.927 50.000 25.15 1.80 0.00 3.36
2682 3249 1.864176 GACGTGTAAAAGGTGCGGG 59.136 57.895 0.00 0.00 0.00 6.13
2779 5016 0.538057 AGGCAAGCAGCTAAAGCACA 60.538 50.000 14.29 0.00 45.16 4.57
2780 5017 0.109412 CAGGCAAGCAGCTAAAGCAC 60.109 55.000 14.29 6.00 45.16 4.40
2822 5070 0.107214 TTTTATCCTGAGCTGGCCGG 60.107 55.000 7.41 7.41 0.00 6.13
2823 5071 1.401905 GTTTTTATCCTGAGCTGGCCG 59.598 52.381 0.00 0.00 0.00 6.13
2824 5072 2.424956 CTGTTTTTATCCTGAGCTGGCC 59.575 50.000 0.00 0.00 0.00 5.36
2825 5073 3.347216 TCTGTTTTTATCCTGAGCTGGC 58.653 45.455 0.00 0.00 0.00 4.85
2826 5074 3.944015 CCTCTGTTTTTATCCTGAGCTGG 59.056 47.826 0.00 0.00 0.00 4.85
2827 5075 3.944015 CCCTCTGTTTTTATCCTGAGCTG 59.056 47.826 0.00 0.00 0.00 4.24
2828 5076 3.054065 CCCCTCTGTTTTTATCCTGAGCT 60.054 47.826 0.00 0.00 0.00 4.09
2829 5077 3.282885 CCCCTCTGTTTTTATCCTGAGC 58.717 50.000 0.00 0.00 0.00 4.26
2830 5078 3.267031 ACCCCCTCTGTTTTTATCCTGAG 59.733 47.826 0.00 0.00 0.00 3.35
2831 5079 3.265489 ACCCCCTCTGTTTTTATCCTGA 58.735 45.455 0.00 0.00 0.00 3.86
2832 5080 3.739401 ACCCCCTCTGTTTTTATCCTG 57.261 47.619 0.00 0.00 0.00 3.86
2833 5081 3.245622 CCAACCCCCTCTGTTTTTATCCT 60.246 47.826 0.00 0.00 0.00 3.24
2834 5082 3.096852 CCAACCCCCTCTGTTTTTATCC 58.903 50.000 0.00 0.00 0.00 2.59
2863 5111 3.175710 ACACCCACTCCACCCCAC 61.176 66.667 0.00 0.00 0.00 4.61
2865 5113 3.647771 GGACACCCACTCCACCCC 61.648 72.222 0.00 0.00 0.00 4.95
2866 5114 2.529389 AGGACACCCACTCCACCC 60.529 66.667 0.00 0.00 33.88 4.61
2881 5129 1.959042 CCATCGATTTGGTGAGGAGG 58.041 55.000 0.00 0.00 31.74 4.30
2899 5147 2.223044 GCGATCTTCATTTTCCACGACC 60.223 50.000 0.00 0.00 0.00 4.79
2935 5183 1.069765 CGGATATCGCAGGTTGCCT 59.930 57.895 0.00 0.00 41.12 4.75
2992 5240 1.821061 CTTCTGTCGGAGGGCACAGT 61.821 60.000 0.00 0.00 40.85 3.55
2993 5241 1.079543 CTTCTGTCGGAGGGCACAG 60.080 63.158 0.00 0.00 41.32 3.66
3000 5248 2.729467 CGACAAGTAGCTTCTGTCGGAG 60.729 54.545 25.41 8.38 45.61 4.63
3032 5302 9.778993 CATGAGAGAATGAAACATTATTTTCGT 57.221 29.630 0.00 0.00 38.17 3.85
3082 5352 9.807921 TTAGAAAAGGACAGATGAATAACCTTT 57.192 29.630 0.00 0.00 45.57 3.11
3083 5353 9.807921 TTTAGAAAAGGACAGATGAATAACCTT 57.192 29.630 0.00 0.00 39.05 3.50
3084 5354 9.807921 TTTTAGAAAAGGACAGATGAATAACCT 57.192 29.630 0.00 0.00 0.00 3.50
3108 5378 9.801873 GCATATACACACATGAATAACCTTTTT 57.198 29.630 0.00 0.00 0.00 1.94
3109 5379 9.189156 AGCATATACACACATGAATAACCTTTT 57.811 29.630 0.00 0.00 0.00 2.27
3110 5380 8.623903 CAGCATATACACACATGAATAACCTTT 58.376 33.333 0.00 0.00 0.00 3.11
3111 5381 7.229306 CCAGCATATACACACATGAATAACCTT 59.771 37.037 0.00 0.00 0.00 3.50
3129 5399 3.834231 GGCAATTTATGGGACCAGCATAT 59.166 43.478 0.00 0.00 0.00 1.78
3149 5419 1.751563 GAGCCTCCACAGGATAGGC 59.248 63.158 7.95 7.95 39.13 3.93
3150 5420 0.468214 TCGAGCCTCCACAGGATAGG 60.468 60.000 0.00 0.00 39.13 2.57
3151 5421 0.958091 CTCGAGCCTCCACAGGATAG 59.042 60.000 0.00 0.00 39.13 2.08
3152 5422 0.468214 CCTCGAGCCTCCACAGGATA 60.468 60.000 6.99 0.00 39.13 2.59
3153 5423 1.760086 CCTCGAGCCTCCACAGGAT 60.760 63.158 6.99 0.00 43.07 3.24
3188 5458 3.081804 CTCCAACCAGGTAAACACCATC 58.918 50.000 0.00 0.00 39.02 3.51
3191 5461 2.943036 TCTCCAACCAGGTAAACACC 57.057 50.000 0.00 0.00 39.02 4.16
3210 5480 7.721399 ACTGACAGAAAATCTCCTTGTTGTATT 59.279 33.333 10.08 0.00 0.00 1.89
3214 5484 6.483307 TGTACTGACAGAAAATCTCCTTGTTG 59.517 38.462 10.08 0.00 0.00 3.33
3218 5488 7.175641 CCATTTGTACTGACAGAAAATCTCCTT 59.824 37.037 10.08 0.00 36.76 3.36
3219 5489 6.656693 CCATTTGTACTGACAGAAAATCTCCT 59.343 38.462 10.08 0.00 36.76 3.69
3235 5506 5.500290 CGAAGAAGTACATCGCCATTTGTAC 60.500 44.000 5.33 5.33 45.44 2.90
3360 5631 4.537936 ACAAGAGCTTCGACAAGTTTTC 57.462 40.909 0.00 0.00 31.45 2.29
3368 5640 4.485024 TCGGATATACAAGAGCTTCGAC 57.515 45.455 0.00 0.00 0.00 4.20


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.