Multiple sequence alignment - TraesCS7D01G151200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G151200 chr7D 100.000 2245 0 0 953 3197 100302532 100300288 0.000000e+00 4146
1 TraesCS7D01G151200 chr7D 100.000 391 0 0 1 391 100303484 100303094 0.000000e+00 723
2 TraesCS7D01G151200 chr7B 95.840 1322 39 8 953 2272 55861929 55860622 0.000000e+00 2122
3 TraesCS7D01G151200 chr7B 87.950 556 32 15 2260 2796 55859012 55858473 9.740000e-175 623
4 TraesCS7D01G151200 chr7B 92.138 407 13 2 1 391 55862338 55861935 1.000000e-154 556
5 TraesCS7D01G151200 chr7B 89.868 227 11 6 2795 3009 55858349 55858123 6.750000e-72 281
6 TraesCS7D01G151200 chr7A 94.781 1322 62 4 953 2272 102546290 102544974 0.000000e+00 2052
7 TraesCS7D01G151200 chr7A 91.148 610 41 5 2216 2824 102541694 102541097 0.000000e+00 815
8 TraesCS7D01G151200 chr7A 94.697 396 13 2 1 391 102546688 102546296 2.730000e-170 608
9 TraesCS7D01G151200 chr7A 91.275 149 10 3 3049 3197 102541098 102540953 1.940000e-47 200


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G151200 chr7D 100300288 100303484 3196 True 2434.50 4146 100.00000 1 3197 2 chr7D.!!$R1 3196
1 TraesCS7D01G151200 chr7B 55858123 55862338 4215 True 895.50 2122 91.44900 1 3009 4 chr7B.!!$R1 3008
2 TraesCS7D01G151200 chr7A 102540953 102546688 5735 True 918.75 2052 92.97525 1 3197 4 chr7A.!!$R1 3196

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
302 319 0.246635 AGTCCGAGTCAAATGGGTCG 59.753 55.000 0.0 0.0 0.00 4.79 F
1728 1746 2.359975 GCCCTCAAGGTGTTCCGG 60.360 66.667 0.0 0.0 38.26 5.14 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1950 1968 0.462581 TATCTGGCTTCCGCTTGCTG 60.463 55.0 0.0 0.0 36.09 4.41 R
2929 7282 0.470833 ACTGTCTCCAGCCACACTCT 60.471 55.0 0.0 0.0 42.81 3.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
254 255 0.592148 GAGAAGGCCGACGACGATAT 59.408 55.000 9.28 0.00 42.66 1.63
302 319 0.246635 AGTCCGAGTCAAATGGGTCG 59.753 55.000 0.00 0.00 0.00 4.79
1728 1746 2.359975 GCCCTCAAGGTGTTCCGG 60.360 66.667 0.00 0.00 38.26 5.14
1950 1968 2.099756 GGTGCTTTTGGATATGCTGGAC 59.900 50.000 0.00 0.00 0.00 4.02
2025 2043 1.448922 GAGCTACGCGGACAGAGGAT 61.449 60.000 12.47 0.00 0.00 3.24
2137 2155 4.943705 GGATTTCTCAGCCACAACAGAATA 59.056 41.667 0.00 0.00 0.00 1.75
2138 2156 5.415701 GGATTTCTCAGCCACAACAGAATAA 59.584 40.000 0.00 0.00 0.00 1.40
2139 2157 6.096001 GGATTTCTCAGCCACAACAGAATAAT 59.904 38.462 0.00 0.00 0.00 1.28
2152 2170 6.127310 ACAACAGAATAATAGTCTTCCTCGCT 60.127 38.462 0.00 0.00 0.00 4.93
2188 2206 2.765699 GCCTCTGATGATAGGGGATCTC 59.234 54.545 0.00 0.00 41.07 2.75
2204 2222 6.159398 AGGGGATCTCATGACTGAAATACTTT 59.841 38.462 0.00 0.00 0.00 2.66
2224 2242 7.416154 ACTTTGATGAAAATTGCATGTCTTG 57.584 32.000 0.00 0.00 0.00 3.02
2233 2251 1.655484 TGCATGTCTTGGTGCTATCG 58.345 50.000 0.00 0.00 41.78 2.92
2235 2253 1.863454 GCATGTCTTGGTGCTATCGAG 59.137 52.381 0.00 0.00 38.30 4.04
2240 2258 1.148157 CTTGGTGCTATCGAGTGGCG 61.148 60.000 0.00 0.00 37.07 5.69
2257 2275 3.553511 GTGGCGAATCACAGTCATAGAAG 59.446 47.826 0.00 0.00 37.57 2.85
2258 2276 2.541762 GGCGAATCACAGTCATAGAAGC 59.458 50.000 0.00 0.00 0.00 3.86
2270 6478 7.924947 CACAGTCATAGAAGCTCTAATTCATGA 59.075 37.037 0.00 0.00 31.96 3.07
2321 6529 6.253942 TCAATATGTTTTGATGCAGAAATGCG 59.746 34.615 0.00 0.00 32.41 4.73
2439 6647 8.682936 AGAGAAGATACACAAAATGTCTTTGT 57.317 30.769 0.00 0.00 42.09 2.83
2534 6758 4.553429 GCAATTTCCGAAGTAAATCACGTG 59.447 41.667 9.94 9.94 0.00 4.49
2542 6766 3.334583 AGTAAATCACGTGTGGCATCT 57.665 42.857 16.51 5.85 0.00 2.90
2564 6788 6.708285 TCTAGAAAAGGTTGTTCCAGGTATC 58.292 40.000 0.00 0.00 39.02 2.24
2565 6789 5.319043 AGAAAAGGTTGTTCCAGGTATCA 57.681 39.130 0.00 0.00 39.02 2.15
2566 6790 5.892348 AGAAAAGGTTGTTCCAGGTATCAT 58.108 37.500 0.00 0.00 39.02 2.45
2567 6791 5.711976 AGAAAAGGTTGTTCCAGGTATCATG 59.288 40.000 0.00 0.00 39.02 3.07
2568 6792 4.657814 AAGGTTGTTCCAGGTATCATGT 57.342 40.909 0.00 0.00 39.02 3.21
2569 6793 5.772393 AAGGTTGTTCCAGGTATCATGTA 57.228 39.130 0.00 0.00 39.02 2.29
2570 6794 5.099042 AGGTTGTTCCAGGTATCATGTAC 57.901 43.478 0.00 0.00 39.02 2.90
2647 6875 1.415374 TGCTCGTAAAGTTCAGTCGC 58.585 50.000 0.00 0.00 0.00 5.19
2824 7177 5.116882 GTCTGTCAATACACCCTTCATACC 58.883 45.833 0.00 0.00 0.00 2.73
2845 7198 9.586435 CATACCGCATTACATCTCTTGATATAA 57.414 33.333 0.00 0.00 0.00 0.98
2900 7253 3.945285 GGATTTCGGGTGTACAACATCAT 59.055 43.478 14.02 0.00 28.66 2.45
2936 7301 4.608948 AAGAAACTACCCAGAGAGTGTG 57.391 45.455 0.00 0.00 0.00 3.82
3009 7374 3.091633 AGCTATTGCAACCTTCACCAT 57.908 42.857 0.00 0.00 42.74 3.55
3010 7375 2.756760 AGCTATTGCAACCTTCACCATG 59.243 45.455 0.00 0.00 42.74 3.66
3011 7376 2.159198 GCTATTGCAACCTTCACCATGG 60.159 50.000 11.19 11.19 39.41 3.66
3012 7377 2.014010 ATTGCAACCTTCACCATGGT 57.986 45.000 13.00 13.00 38.35 3.55
3013 7378 1.039068 TTGCAACCTTCACCATGGTG 58.961 50.000 35.00 35.00 46.64 4.17
3022 7387 4.101448 ACCATGGTGAGGCCTCGC 62.101 66.667 34.02 34.02 39.26 5.03
3023 7388 3.790437 CCATGGTGAGGCCTCGCT 61.790 66.667 38.00 22.12 39.85 4.93
3024 7389 2.270205 CATGGTGAGGCCTCGCTT 59.730 61.111 38.00 25.93 39.85 4.68
3025 7390 1.377725 CATGGTGAGGCCTCGCTTT 60.378 57.895 38.00 25.61 39.85 3.51
3026 7391 0.962356 CATGGTGAGGCCTCGCTTTT 60.962 55.000 38.00 23.40 39.85 2.27
3027 7392 0.618458 ATGGTGAGGCCTCGCTTTTA 59.382 50.000 38.00 24.61 39.85 1.52
3028 7393 0.618458 TGGTGAGGCCTCGCTTTTAT 59.382 50.000 38.00 0.00 39.85 1.40
3029 7394 1.834896 TGGTGAGGCCTCGCTTTTATA 59.165 47.619 38.00 18.93 39.85 0.98
3030 7395 2.438021 TGGTGAGGCCTCGCTTTTATAT 59.562 45.455 38.00 0.00 39.85 0.86
3031 7396 3.118038 TGGTGAGGCCTCGCTTTTATATT 60.118 43.478 38.00 0.00 39.85 1.28
3032 7397 3.251004 GGTGAGGCCTCGCTTTTATATTG 59.749 47.826 38.00 0.00 39.85 1.90
3033 7398 3.877508 GTGAGGCCTCGCTTTTATATTGT 59.122 43.478 34.32 0.00 37.16 2.71
3034 7399 3.876914 TGAGGCCTCGCTTTTATATTGTG 59.123 43.478 27.43 0.00 0.00 3.33
3035 7400 2.618709 AGGCCTCGCTTTTATATTGTGC 59.381 45.455 0.00 0.00 0.00 4.57
3036 7401 2.357637 GGCCTCGCTTTTATATTGTGCA 59.642 45.455 0.00 0.00 0.00 4.57
3037 7402 3.004734 GGCCTCGCTTTTATATTGTGCAT 59.995 43.478 0.00 0.00 0.00 3.96
3038 7403 3.976942 GCCTCGCTTTTATATTGTGCATG 59.023 43.478 0.00 0.00 0.00 4.06
3039 7404 4.498009 GCCTCGCTTTTATATTGTGCATGT 60.498 41.667 0.00 0.00 0.00 3.21
3040 7405 4.971830 CCTCGCTTTTATATTGTGCATGTG 59.028 41.667 0.00 0.00 0.00 3.21
3041 7406 5.220835 CCTCGCTTTTATATTGTGCATGTGA 60.221 40.000 0.00 0.00 0.00 3.58
3042 7407 6.188400 TCGCTTTTATATTGTGCATGTGAA 57.812 33.333 0.00 0.00 0.00 3.18
3043 7408 6.794374 TCGCTTTTATATTGTGCATGTGAAT 58.206 32.000 0.00 0.00 0.00 2.57
3044 7409 7.257003 TCGCTTTTATATTGTGCATGTGAATT 58.743 30.769 0.00 0.00 0.00 2.17
3045 7410 7.431960 TCGCTTTTATATTGTGCATGTGAATTC 59.568 33.333 0.00 0.00 0.00 2.17
3046 7411 7.549649 GCTTTTATATTGTGCATGTGAATTCG 58.450 34.615 0.04 0.00 0.00 3.34
3047 7412 7.448588 TTTTATATTGTGCATGTGAATTCGC 57.551 32.000 12.17 12.17 0.00 4.70
3048 7413 4.635833 ATATTGTGCATGTGAATTCGCA 57.364 36.364 23.05 23.05 40.98 5.10
3057 7422 2.020720 TGTGAATTCGCACAAGTGGTT 58.979 42.857 17.57 0.00 45.08 3.67
3070 7435 5.812127 GCACAAGTGGTTTTCTTCTGAATTT 59.188 36.000 2.00 0.00 31.56 1.82
3119 7484 3.795877 CAGCACTGGAACCAACAAAAAT 58.204 40.909 0.00 0.00 0.00 1.82
3121 7486 4.034279 CAGCACTGGAACCAACAAAAATTG 59.966 41.667 0.00 0.00 0.00 2.32
3134 7499 8.268823 CCAACAAAAATTGGTCGATTATATCG 57.731 34.615 2.80 2.80 45.70 2.92
3155 7520 6.045072 TCGGTAGTAACAAATGGATTGAGT 57.955 37.500 0.00 0.00 41.85 3.41
3156 7521 6.469410 TCGGTAGTAACAAATGGATTGAGTT 58.531 36.000 0.00 0.00 41.85 3.01
3179 7544 2.288666 GATCCTTTGCCAATCGTAGCA 58.711 47.619 0.00 0.00 37.18 3.49
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
243 244 1.724929 GCCGTCCATATCGTCGTCG 60.725 63.158 0.00 0.00 38.55 5.12
244 245 0.660595 CTGCCGTCCATATCGTCGTC 60.661 60.000 0.00 0.00 0.00 4.20
245 246 1.359117 CTGCCGTCCATATCGTCGT 59.641 57.895 0.00 0.00 0.00 4.34
254 255 2.369633 ATGGAGATGCTGCCGTCCA 61.370 57.895 14.70 14.70 43.23 4.02
302 319 1.134699 GGCAAAAGAATTAGGCCCAGC 60.135 52.381 0.00 0.00 38.70 4.85
362 379 2.665185 GTGGAAAGGTCACGCGCT 60.665 61.111 5.73 0.00 0.00 5.92
1359 1377 0.523546 CGTCGTGGATGAGGTTCTCG 60.524 60.000 0.00 0.00 32.35 4.04
1692 1710 1.374758 GTCGTCCACCTCAAGGCAG 60.375 63.158 0.00 0.00 39.32 4.85
1728 1746 4.878878 CCGTAGAGGGGCATTTCC 57.121 61.111 0.00 0.00 35.97 3.13
1950 1968 0.462581 TATCTGGCTTCCGCTTGCTG 60.463 55.000 0.00 0.00 36.09 4.41
1957 1975 3.674528 AGTGATCATATCTGGCTTCCG 57.325 47.619 0.00 0.00 0.00 4.30
2056 2074 2.176273 CCAATGCTCCTCGCTTCCG 61.176 63.158 0.00 0.00 40.11 4.30
2137 2155 2.826128 TGTCACAGCGAGGAAGACTATT 59.174 45.455 0.00 0.00 0.00 1.73
2138 2156 2.425312 CTGTCACAGCGAGGAAGACTAT 59.575 50.000 0.00 0.00 0.00 2.12
2139 2157 1.813178 CTGTCACAGCGAGGAAGACTA 59.187 52.381 0.00 0.00 0.00 2.59
2152 2170 3.640407 GGCAGAGCCCCTGTCACA 61.640 66.667 3.72 0.00 46.49 3.58
2204 2222 5.231702 CACCAAGACATGCAATTTTCATCA 58.768 37.500 0.00 0.00 0.00 3.07
2224 2242 2.805546 TCGCCACTCGATAGCACC 59.194 61.111 0.00 0.00 43.16 5.01
2233 2251 2.015736 ATGACTGTGATTCGCCACTC 57.984 50.000 0.00 0.00 37.89 3.51
2235 2253 3.165058 TCTATGACTGTGATTCGCCAC 57.835 47.619 0.00 0.00 37.55 5.01
2240 2258 8.885494 AATTAGAGCTTCTATGACTGTGATTC 57.115 34.615 0.00 0.00 0.00 2.52
2257 2275 9.928236 GAAGTACATTCTTTCATGAATTAGAGC 57.072 33.333 9.40 0.76 34.77 4.09
2270 6478 9.678260 AATCTATCAAGCAGAAGTACATTCTTT 57.322 29.630 0.00 0.00 46.49 2.52
2321 6529 3.802866 CAGTTCCTCCTTATGCTCTTCC 58.197 50.000 0.00 0.00 0.00 3.46
2344 6552 3.545703 AGTTTGAGTCAACCAGGTCAAG 58.454 45.455 4.68 0.00 30.86 3.02
2439 6647 4.656100 TTTTCTGATCCCACATCTCCAA 57.344 40.909 0.00 0.00 0.00 3.53
2534 6758 4.082733 GGAACAACCTTTTCTAGATGCCAC 60.083 45.833 0.00 0.00 35.41 5.01
2542 6766 6.442541 TGATACCTGGAACAACCTTTTCTA 57.557 37.500 0.00 0.00 38.70 2.10
2569 6793 9.587772 GTTGTGTAGTTCTTCATATCATACAGT 57.412 33.333 0.00 0.00 0.00 3.55
2570 6794 9.586435 TGTTGTGTAGTTCTTCATATCATACAG 57.414 33.333 0.00 0.00 0.00 2.74
2624 6851 4.784079 GCGACTGAACTTTACGAGCAAAAA 60.784 41.667 0.00 0.00 0.00 1.94
2645 6873 4.094887 ACAGGCATAAACACTTATTCTGCG 59.905 41.667 0.00 0.00 33.59 5.18
2647 6875 6.595326 TCTCACAGGCATAAACACTTATTCTG 59.405 38.462 0.00 0.00 34.97 3.02
2845 7198 3.191371 GGAGGAATTGCGTTCTCATTTGT 59.809 43.478 0.00 0.00 37.01 2.83
2900 7253 5.888982 AGTTTCTTACCCAGAGAGTTGAA 57.111 39.130 0.00 0.00 31.12 2.69
2929 7282 0.470833 ACTGTCTCCAGCCACACTCT 60.471 55.000 0.00 0.00 42.81 3.24
2931 7284 0.839946 AAACTGTCTCCAGCCACACT 59.160 50.000 0.00 0.00 42.81 3.55
2932 7285 2.543777 TAAACTGTCTCCAGCCACAC 57.456 50.000 0.00 0.00 42.81 3.82
2936 7301 3.674997 TCATGTTAAACTGTCTCCAGCC 58.325 45.455 0.00 0.00 42.81 4.85
2983 7348 1.467920 AGGTTGCAATAGCTTCCAGC 58.532 50.000 0.59 0.00 42.84 4.85
2992 7357 3.168035 ACCATGGTGAAGGTTGCAATA 57.832 42.857 18.99 0.00 33.39 1.90
3009 7374 0.618458 ATAAAAGCGAGGCCTCACCA 59.382 50.000 31.67 10.87 43.14 4.17
3010 7375 2.614829 TATAAAAGCGAGGCCTCACC 57.385 50.000 31.67 21.21 39.61 4.02
3011 7376 3.877508 ACAATATAAAAGCGAGGCCTCAC 59.122 43.478 31.67 23.10 0.00 3.51
3012 7377 3.876914 CACAATATAAAAGCGAGGCCTCA 59.123 43.478 31.67 12.23 0.00 3.86
3013 7378 3.304057 GCACAATATAAAAGCGAGGCCTC 60.304 47.826 23.79 23.79 0.00 4.70
3014 7379 2.618709 GCACAATATAAAAGCGAGGCCT 59.381 45.455 3.86 3.86 0.00 5.19
3015 7380 2.357637 TGCACAATATAAAAGCGAGGCC 59.642 45.455 0.00 0.00 0.00 5.19
3016 7381 3.691049 TGCACAATATAAAAGCGAGGC 57.309 42.857 0.00 0.00 0.00 4.70
3017 7382 4.971830 CACATGCACAATATAAAAGCGAGG 59.028 41.667 0.00 0.00 0.00 4.63
3018 7383 5.809464 TCACATGCACAATATAAAAGCGAG 58.191 37.500 0.00 0.00 0.00 5.03
3019 7384 5.809719 TCACATGCACAATATAAAAGCGA 57.190 34.783 0.00 0.00 0.00 4.93
3020 7385 7.453980 AATTCACATGCACAATATAAAAGCG 57.546 32.000 0.00 0.00 0.00 4.68
3021 7386 7.549649 CGAATTCACATGCACAATATAAAAGC 58.450 34.615 6.22 0.00 0.00 3.51
3022 7387 7.220491 TGCGAATTCACATGCACAATATAAAAG 59.780 33.333 6.22 0.00 31.31 2.27
3023 7388 7.031975 TGCGAATTCACATGCACAATATAAAA 58.968 30.769 6.22 0.00 31.31 1.52
3024 7389 6.558909 TGCGAATTCACATGCACAATATAAA 58.441 32.000 6.22 0.00 31.31 1.40
3025 7390 6.129053 TGCGAATTCACATGCACAATATAA 57.871 33.333 6.22 0.00 31.31 0.98
3026 7391 5.747951 TGCGAATTCACATGCACAATATA 57.252 34.783 6.22 0.00 31.31 0.86
3027 7392 4.635833 TGCGAATTCACATGCACAATAT 57.364 36.364 6.22 0.00 31.31 1.28
3033 7398 1.608109 ACTTGTGCGAATTCACATGCA 59.392 42.857 6.22 3.95 45.26 3.96
3034 7399 1.980844 CACTTGTGCGAATTCACATGC 59.019 47.619 6.22 1.10 45.26 4.06
3035 7400 2.030893 ACCACTTGTGCGAATTCACATG 60.031 45.455 6.22 8.59 45.26 3.21
3036 7401 2.229792 ACCACTTGTGCGAATTCACAT 58.770 42.857 6.22 0.00 45.26 3.21
3037 7402 1.674359 ACCACTTGTGCGAATTCACA 58.326 45.000 6.22 0.00 44.39 3.58
3038 7403 2.774439 AACCACTTGTGCGAATTCAC 57.226 45.000 6.22 0.00 37.48 3.18
3039 7404 3.380004 AGAAAACCACTTGTGCGAATTCA 59.620 39.130 6.22 0.00 0.00 2.57
3040 7405 3.964909 AGAAAACCACTTGTGCGAATTC 58.035 40.909 0.00 0.00 0.00 2.17
3041 7406 4.097892 AGAAGAAAACCACTTGTGCGAATT 59.902 37.500 0.00 0.00 0.00 2.17
3042 7407 3.632145 AGAAGAAAACCACTTGTGCGAAT 59.368 39.130 0.00 0.00 0.00 3.34
3043 7408 3.013921 AGAAGAAAACCACTTGTGCGAA 58.986 40.909 0.00 0.00 0.00 4.70
3044 7409 2.354510 CAGAAGAAAACCACTTGTGCGA 59.645 45.455 0.00 0.00 33.35 5.10
3045 7410 2.354510 TCAGAAGAAAACCACTTGTGCG 59.645 45.455 0.00 0.00 38.13 5.34
3046 7411 4.370364 TTCAGAAGAAAACCACTTGTGC 57.630 40.909 0.00 0.00 38.13 4.57
3047 7412 7.832503 AAAATTCAGAAGAAAACCACTTGTG 57.167 32.000 0.00 0.00 39.10 3.33
3048 7413 7.979537 GGTAAAATTCAGAAGAAAACCACTTGT 59.020 33.333 0.00 0.00 37.29 3.16
3049 7414 7.978975 TGGTAAAATTCAGAAGAAAACCACTTG 59.021 33.333 6.25 0.00 37.29 3.16
3057 7422 7.013846 ACGGATGTTGGTAAAATTCAGAAGAAA 59.986 33.333 0.00 0.00 37.29 2.52
3129 7494 8.429641 ACTCAATCCATTTGTTACTACCGATAT 58.570 33.333 0.00 0.00 36.65 1.63
3134 7499 8.573035 TCAAAACTCAATCCATTTGTTACTACC 58.427 33.333 0.00 0.00 36.65 3.18
3151 7516 4.321156 CGATTGGCAAAGGATCAAAACTCA 60.321 41.667 3.01 0.00 0.00 3.41
3152 7517 4.168760 CGATTGGCAAAGGATCAAAACTC 58.831 43.478 3.01 0.00 0.00 3.01
3155 7520 4.380444 GCTACGATTGGCAAAGGATCAAAA 60.380 41.667 3.01 0.00 0.00 2.44
3156 7521 3.128589 GCTACGATTGGCAAAGGATCAAA 59.871 43.478 3.01 0.00 0.00 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.