Multiple sequence alignment - TraesCS7D01G149100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G149100 chr7D 100.000 3428 0 0 1 3428 97951568 97954995 0.000000e+00 6331.0
1 TraesCS7D01G149100 chr7D 83.582 201 24 5 183 377 595646622 595646425 2.720000e-41 180.0
2 TraesCS7D01G149100 chr7B 95.951 2272 52 8 490 2746 52615264 52617510 0.000000e+00 3650.0
3 TraesCS7D01G149100 chr7B 96.901 355 4 1 2744 3098 52617568 52617915 3.810000e-164 588.0
4 TraesCS7D01G149100 chr7B 96.142 337 9 2 3095 3428 52620633 52620968 6.470000e-152 547.0
5 TraesCS7D01G149100 chr7B 82.439 205 27 5 180 379 340667459 340667659 1.640000e-38 171.0
6 TraesCS7D01G149100 chr7B 92.453 106 8 0 399 504 52615140 52615245 5.930000e-33 152.0
7 TraesCS7D01G149100 chr4D 79.985 1319 204 32 1095 2374 480853320 480854617 0.000000e+00 918.0
8 TraesCS7D01G149100 chr4D 83.406 229 33 5 152 378 101675997 101676222 1.250000e-49 207.0
9 TraesCS7D01G149100 chr5A 80.549 802 122 18 1121 1893 662664949 662664153 1.370000e-163 586.0
10 TraesCS7D01G149100 chr4B 79.623 795 126 20 1121 1882 608826102 608826893 3.890000e-149 538.0
11 TraesCS7D01G149100 chr4B 82.282 412 65 5 1970 2374 608826922 608827332 1.960000e-92 350.0
12 TraesCS7D01G149100 chr4B 82.938 211 28 7 169 378 642182278 642182075 2.100000e-42 183.0
13 TraesCS7D01G149100 chr2A 86.869 198 23 2 181 378 110868695 110868501 5.760000e-53 219.0
14 TraesCS7D01G149100 chr2A 87.850 107 9 2 54 156 766496859 766496753 4.650000e-24 122.0
15 TraesCS7D01G149100 chr1A 75.862 464 87 22 1952 2401 493541991 493541539 2.680000e-51 213.0
16 TraesCS7D01G149100 chr1A 71.701 576 120 26 1133 1676 493542786 493542222 1.670000e-23 121.0
17 TraesCS7D01G149100 chr1A 73.451 339 78 10 2043 2378 554222757 554223086 2.160000e-22 117.0
18 TraesCS7D01G149100 chr2D 84.141 227 25 7 158 378 345276579 345276358 3.470000e-50 209.0
19 TraesCS7D01G149100 chr5D 85.075 201 27 3 180 378 549013575 549013774 5.800000e-48 202.0
20 TraesCS7D01G149100 chr4A 84.772 197 27 3 180 376 678851544 678851737 9.710000e-46 195.0
21 TraesCS7D01G149100 chr1B 74.836 457 89 23 1959 2401 531006538 531006094 2.100000e-42 183.0
22 TraesCS7D01G149100 chr1B 75.591 254 57 5 2139 2389 637622861 637623112 1.670000e-23 121.0
23 TraesCS7D01G149100 chr1B 82.883 111 19 0 1139 1249 559332746 559332856 2.180000e-17 100.0
24 TraesCS7D01G149100 chr1B 85.227 88 13 0 1133 1220 531012815 531012728 1.310000e-14 91.6
25 TraesCS7D01G149100 chr1B 73.077 260 64 5 2136 2392 637524067 637523811 1.690000e-13 87.9
26 TraesCS7D01G149100 chr1D 83.251 203 24 9 181 378 46391656 46391853 9.780000e-41 178.0
27 TraesCS7D01G149100 chr1D 74.613 323 76 6 2070 2389 462488779 462489098 1.660000e-28 137.0
28 TraesCS7D01G149100 chr1D 71.675 406 103 10 1965 2364 462396509 462396908 6.050000e-18 102.0
29 TraesCS7D01G149100 chr1D 85.185 81 11 1 1141 1220 391679230 391679310 7.880000e-12 82.4
30 TraesCS7D01G149100 chr5B 88.571 105 11 1 53 156 558613815 558613711 3.590000e-25 126.0
31 TraesCS7D01G149100 chrUn 86.916 107 13 1 50 156 33523797 33523902 6.010000e-23 119.0
32 TraesCS7D01G149100 chrUn 87.500 104 12 1 53 156 33809449 33809347 6.010000e-23 119.0
33 TraesCS7D01G149100 chrUn 87.500 104 12 1 53 156 33835108 33835006 6.010000e-23 119.0
34 TraesCS7D01G149100 chrUn 87.500 104 12 1 53 156 33962447 33962345 6.010000e-23 119.0
35 TraesCS7D01G149100 chrUn 87.500 104 12 1 53 156 385390101 385389999 6.010000e-23 119.0
36 TraesCS7D01G149100 chrUn 87.500 104 12 1 53 156 385451523 385451421 6.010000e-23 119.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G149100 chr7D 97951568 97954995 3427 False 6331.00 6331 100.00000 1 3428 1 chr7D.!!$F1 3427
1 TraesCS7D01G149100 chr7B 52615140 52620968 5828 False 1234.25 3650 95.36175 399 3428 4 chr7B.!!$F2 3029
2 TraesCS7D01G149100 chr4D 480853320 480854617 1297 False 918.00 918 79.98500 1095 2374 1 chr4D.!!$F2 1279
3 TraesCS7D01G149100 chr5A 662664153 662664949 796 True 586.00 586 80.54900 1121 1893 1 chr5A.!!$R1 772
4 TraesCS7D01G149100 chr4B 608826102 608827332 1230 False 444.00 538 80.95250 1121 2374 2 chr4B.!!$F1 1253

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
365 366 0.030908 CTGATCGTTACGAGGCTCCC 59.969 60.0 14.09 0.00 39.91 4.30 F
381 382 0.108329 TCCCGAAAAAGCGCTCTAGG 60.108 55.0 12.06 10.36 0.00 3.02 F
389 390 0.171455 AAGCGCTCTAGGTGTTCTCG 59.829 55.0 12.06 0.00 0.00 4.04 F
500 501 0.238817 CGAGGACCAGCTAGCGATAC 59.761 60.0 9.55 0.00 0.00 2.24 F
692 728 0.396811 AGGTAAGCACGCAAAGTCCT 59.603 50.0 0.00 0.00 0.00 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1526 1571 1.065102 CGGTAGATGTACACCTGACCG 59.935 57.143 18.05 18.05 41.96 4.79 R
1920 1986 1.421268 ACAAACTCTGGACCTGATGCA 59.579 47.619 0.96 0.00 0.00 3.96 R
2079 2148 1.725641 TGCGATGATTCAGTGACCAC 58.274 50.000 0.00 0.00 0.00 4.16 R
2408 2480 0.323629 CTAGTTTCGGTTGGGAGGCA 59.676 55.000 0.00 0.00 0.00 4.75 R
2567 2650 3.513912 TGTGTGTCCTCTACAAGGTATGG 59.486 47.826 0.00 0.00 46.32 2.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.582714 CCTCTCATGGAAGCAAAAACC 57.417 47.619 0.00 0.00 0.00 3.27
21 22 2.095059 CCTCTCATGGAAGCAAAAACCG 60.095 50.000 0.00 0.00 0.00 4.44
22 23 2.554032 CTCTCATGGAAGCAAAAACCGT 59.446 45.455 0.00 0.00 0.00 4.83
23 24 2.293122 TCTCATGGAAGCAAAAACCGTG 59.707 45.455 0.00 0.00 40.72 4.94
24 25 2.293122 CTCATGGAAGCAAAAACCGTGA 59.707 45.455 0.00 0.00 44.22 4.35
25 26 2.034053 TCATGGAAGCAAAAACCGTGAC 59.966 45.455 0.00 0.00 42.43 3.67
26 27 1.757682 TGGAAGCAAAAACCGTGACT 58.242 45.000 0.00 0.00 0.00 3.41
27 28 1.673920 TGGAAGCAAAAACCGTGACTC 59.326 47.619 0.00 0.00 0.00 3.36
28 29 1.001706 GGAAGCAAAAACCGTGACTCC 60.002 52.381 0.00 0.00 0.00 3.85
29 30 1.001706 GAAGCAAAAACCGTGACTCCC 60.002 52.381 0.00 0.00 0.00 4.30
30 31 1.164041 AGCAAAAACCGTGACTCCCG 61.164 55.000 0.00 0.00 0.00 5.14
31 32 1.281656 CAAAAACCGTGACTCCCGC 59.718 57.895 0.00 0.00 0.00 6.13
38 39 4.667420 GTGACTCCCGCGAAAGAA 57.333 55.556 8.23 0.00 0.00 2.52
39 40 2.908817 GTGACTCCCGCGAAAGAAA 58.091 52.632 8.23 0.00 0.00 2.52
40 41 1.223187 GTGACTCCCGCGAAAGAAAA 58.777 50.000 8.23 0.00 0.00 2.29
41 42 1.600485 GTGACTCCCGCGAAAGAAAAA 59.400 47.619 8.23 0.00 0.00 1.94
70 71 2.343758 GTGCCTCTCACGGAAGCA 59.656 61.111 0.00 0.00 38.87 3.91
71 72 1.301716 GTGCCTCTCACGGAAGCAA 60.302 57.895 0.00 0.00 42.24 3.91
72 73 0.884704 GTGCCTCTCACGGAAGCAAA 60.885 55.000 0.00 0.00 42.24 3.68
73 74 0.179032 TGCCTCTCACGGAAGCAAAA 60.179 50.000 0.00 0.00 38.32 2.44
74 75 0.238553 GCCTCTCACGGAAGCAAAAC 59.761 55.000 0.00 0.00 32.03 2.43
75 76 0.875059 CCTCTCACGGAAGCAAAACC 59.125 55.000 0.00 0.00 0.00 3.27
82 83 1.963747 CGGAAGCAAAACCGTGATTC 58.036 50.000 0.00 0.00 42.00 2.52
83 84 1.535462 CGGAAGCAAAACCGTGATTCT 59.465 47.619 0.00 0.00 42.29 2.40
84 85 2.031157 CGGAAGCAAAACCGTGATTCTT 60.031 45.455 0.00 0.00 42.29 2.52
85 86 3.308530 GGAAGCAAAACCGTGATTCTTG 58.691 45.455 3.53 0.00 42.29 3.02
86 87 2.422276 AGCAAAACCGTGATTCTTGC 57.578 45.000 0.00 0.00 42.10 4.01
87 88 1.052287 GCAAAACCGTGATTCTTGCG 58.948 50.000 0.00 0.00 33.74 4.85
88 89 1.334599 GCAAAACCGTGATTCTTGCGA 60.335 47.619 0.00 0.00 33.74 5.10
89 90 2.856720 GCAAAACCGTGATTCTTGCGAA 60.857 45.455 0.00 0.00 33.74 4.70
90 91 3.367607 CAAAACCGTGATTCTTGCGAAA 58.632 40.909 0.00 0.00 31.91 3.46
91 92 2.969443 AACCGTGATTCTTGCGAAAG 57.031 45.000 0.00 0.00 31.91 2.62
111 112 6.833880 CGAAAGCAAAAATAACAGAAAACACG 59.166 34.615 0.00 0.00 0.00 4.49
112 113 7.462200 CGAAAGCAAAAATAACAGAAAACACGT 60.462 33.333 0.00 0.00 0.00 4.49
113 114 7.589574 AAGCAAAAATAACAGAAAACACGTT 57.410 28.000 0.00 0.00 0.00 3.99
114 115 7.589574 AGCAAAAATAACAGAAAACACGTTT 57.410 28.000 0.00 0.00 0.00 3.60
115 116 8.024146 AGCAAAAATAACAGAAAACACGTTTT 57.976 26.923 7.59 7.59 44.59 2.43
126 127 5.750484 AAAACACGTTTTCTTCCGTTTTC 57.250 34.783 2.06 0.00 38.27 2.29
127 128 3.042311 ACACGTTTTCTTCCGTTTTCG 57.958 42.857 0.00 0.00 43.67 3.46
128 129 1.771291 CACGTTTTCTTCCGTTTTCGC 59.229 47.619 0.00 0.00 42.58 4.70
129 130 1.032080 CGTTTTCTTCCGTTTTCGCG 58.968 50.000 0.00 0.00 42.58 5.87
130 131 1.332202 CGTTTTCTTCCGTTTTCGCGA 60.332 47.619 3.71 3.71 42.58 5.87
131 132 2.295696 GTTTTCTTCCGTTTTCGCGAG 58.704 47.619 9.59 0.00 42.58 5.03
132 133 0.863144 TTTCTTCCGTTTTCGCGAGG 59.137 50.000 9.59 7.43 42.58 4.63
133 134 1.562575 TTCTTCCGTTTTCGCGAGGC 61.563 55.000 9.59 2.57 42.58 4.70
134 135 2.280254 TTCCGTTTTCGCGAGGCA 60.280 55.556 9.59 0.00 42.58 4.75
135 136 2.494504 CTTCCGTTTTCGCGAGGCAC 62.495 60.000 9.59 6.62 42.58 5.01
136 137 4.424430 CCGTTTTCGCGAGGCACG 62.424 66.667 22.52 22.52 45.66 5.34
137 138 4.424430 CGTTTTCGCGAGGCACGG 62.424 66.667 22.02 9.20 42.83 4.94
138 139 4.736631 GTTTTCGCGAGGCACGGC 62.737 66.667 9.59 0.00 42.83 5.68
152 153 4.717629 CGGCCGTGACTCTCGCAA 62.718 66.667 19.50 0.00 0.00 4.85
153 154 2.357034 GGCCGTGACTCTCGCAAA 60.357 61.111 0.00 0.00 0.00 3.68
154 155 1.959226 GGCCGTGACTCTCGCAAAA 60.959 57.895 0.00 0.00 0.00 2.44
155 156 1.493311 GCCGTGACTCTCGCAAAAG 59.507 57.895 0.00 0.00 0.00 2.27
156 157 1.901650 GCCGTGACTCTCGCAAAAGG 61.902 60.000 0.00 0.00 0.00 3.11
157 158 0.319555 CCGTGACTCTCGCAAAAGGA 60.320 55.000 0.00 0.00 0.00 3.36
158 159 1.497991 CGTGACTCTCGCAAAAGGAA 58.502 50.000 0.00 0.00 0.00 3.36
159 160 1.864711 CGTGACTCTCGCAAAAGGAAA 59.135 47.619 0.00 0.00 0.00 3.13
160 161 2.286833 CGTGACTCTCGCAAAAGGAAAA 59.713 45.455 0.00 0.00 0.00 2.29
161 162 3.242608 CGTGACTCTCGCAAAAGGAAAAA 60.243 43.478 0.00 0.00 0.00 1.94
206 207 4.744795 TTTTGGTTGAAAAGCTAAGGCA 57.255 36.364 0.00 0.00 46.34 4.75
207 208 4.320608 TTTGGTTGAAAAGCTAAGGCAG 57.679 40.909 0.00 0.00 46.34 4.85
208 209 3.222173 TGGTTGAAAAGCTAAGGCAGA 57.778 42.857 0.00 0.00 46.34 4.26
209 210 2.884639 TGGTTGAAAAGCTAAGGCAGAC 59.115 45.455 0.00 0.00 46.34 3.51
210 211 2.229062 GGTTGAAAAGCTAAGGCAGACC 59.771 50.000 0.00 0.00 42.05 3.85
211 212 1.808411 TGAAAAGCTAAGGCAGACCG 58.192 50.000 0.00 0.00 42.76 4.79
212 213 1.087501 GAAAAGCTAAGGCAGACCGG 58.912 55.000 0.00 0.00 42.76 5.28
213 214 0.400594 AAAAGCTAAGGCAGACCGGT 59.599 50.000 6.92 6.92 42.76 5.28
214 215 0.321653 AAAGCTAAGGCAGACCGGTG 60.322 55.000 14.63 0.00 42.76 4.94
215 216 2.125106 GCTAAGGCAGACCGGTGG 60.125 66.667 14.63 4.84 42.76 4.61
216 217 2.656069 GCTAAGGCAGACCGGTGGA 61.656 63.158 14.63 0.00 42.76 4.02
217 218 1.980052 CTAAGGCAGACCGGTGGAA 59.020 57.895 14.63 0.00 42.76 3.53
218 219 0.323629 CTAAGGCAGACCGGTGGAAA 59.676 55.000 14.63 0.00 42.76 3.13
219 220 0.766131 TAAGGCAGACCGGTGGAAAA 59.234 50.000 14.63 0.00 42.76 2.29
220 221 0.822121 AAGGCAGACCGGTGGAAAAC 60.822 55.000 14.63 0.00 42.76 2.43
221 222 2.265904 GGCAGACCGGTGGAAAACC 61.266 63.158 14.63 0.00 46.60 3.27
258 259 9.445878 AAAAACCCAGAAAAATAACCGTTTAAA 57.554 25.926 0.00 0.00 0.00 1.52
259 260 9.445878 AAAACCCAGAAAAATAACCGTTTAAAA 57.554 25.926 0.00 0.00 0.00 1.52
260 261 9.445878 AAACCCAGAAAAATAACCGTTTAAAAA 57.554 25.926 0.00 0.00 0.00 1.94
261 262 8.651391 ACCCAGAAAAATAACCGTTTAAAAAG 57.349 30.769 0.00 0.00 0.00 2.27
262 263 7.225145 ACCCAGAAAAATAACCGTTTAAAAAGC 59.775 33.333 0.00 0.00 0.00 3.51
263 264 7.307514 CCCAGAAAAATAACCGTTTAAAAAGCC 60.308 37.037 0.00 0.00 0.00 4.35
264 265 7.277917 CAGAAAAATAACCGTTTAAAAAGCCG 58.722 34.615 0.00 0.00 0.00 5.52
265 266 7.167801 CAGAAAAATAACCGTTTAAAAAGCCGA 59.832 33.333 0.00 0.00 0.00 5.54
266 267 7.705752 AGAAAAATAACCGTTTAAAAAGCCGAA 59.294 29.630 0.00 0.00 0.00 4.30
267 268 7.767745 AAAATAACCGTTTAAAAAGCCGAAA 57.232 28.000 0.00 0.00 0.00 3.46
268 269 7.767745 AAATAACCGTTTAAAAAGCCGAAAA 57.232 28.000 0.00 0.00 0.00 2.29
269 270 6.752335 ATAACCGTTTAAAAAGCCGAAAAC 57.248 33.333 0.00 0.00 0.00 2.43
271 272 3.130797 CGTTTAAAAAGCCGAAAACGC 57.869 42.857 6.30 0.00 44.94 4.84
272 273 2.406245 CGTTTAAAAAGCCGAAAACGCG 60.406 45.455 3.53 3.53 44.94 6.01
273 274 2.471862 TTAAAAAGCCGAAAACGCGT 57.528 40.000 5.58 5.58 0.00 6.01
274 275 1.744374 TAAAAAGCCGAAAACGCGTG 58.256 45.000 14.98 0.00 0.00 5.34
275 276 0.179158 AAAAAGCCGAAAACGCGTGT 60.179 45.000 14.98 3.14 0.00 4.49
276 277 0.863957 AAAAGCCGAAAACGCGTGTG 60.864 50.000 14.98 2.49 0.00 3.82
277 278 1.707239 AAAGCCGAAAACGCGTGTGA 61.707 50.000 14.98 0.00 0.00 3.58
278 279 1.707239 AAGCCGAAAACGCGTGTGAA 61.707 50.000 14.98 0.00 0.00 3.18
279 280 1.297745 GCCGAAAACGCGTGTGAAA 60.298 52.632 14.98 0.00 0.00 2.69
280 281 0.862283 GCCGAAAACGCGTGTGAAAA 60.862 50.000 14.98 0.00 0.00 2.29
281 282 1.536149 CCGAAAACGCGTGTGAAAAA 58.464 45.000 14.98 0.00 0.00 1.94
309 310 4.929315 CGAAGGAAACGTTCAAAACATG 57.071 40.909 0.00 0.00 0.00 3.21
310 311 4.593157 CGAAGGAAACGTTCAAAACATGA 58.407 39.130 0.00 0.00 35.85 3.07
311 312 4.436523 CGAAGGAAACGTTCAAAACATGAC 59.563 41.667 0.00 0.00 37.92 3.06
312 313 4.974368 AGGAAACGTTCAAAACATGACA 57.026 36.364 0.00 0.00 37.92 3.58
313 314 4.668289 AGGAAACGTTCAAAACATGACAC 58.332 39.130 0.00 0.00 37.92 3.67
314 315 3.480668 GGAAACGTTCAAAACATGACACG 59.519 43.478 0.00 0.78 42.72 4.49
316 317 3.046285 ACGTTCAAAACATGACACGTG 57.954 42.857 15.48 15.48 45.33 4.49
317 318 2.673862 ACGTTCAAAACATGACACGTGA 59.326 40.909 25.01 0.00 45.33 4.35
318 319 3.026349 CGTTCAAAACATGACACGTGAC 58.974 45.455 25.01 17.68 37.92 3.67
319 320 3.026349 GTTCAAAACATGACACGTGACG 58.974 45.455 25.01 2.24 37.92 4.35
320 321 2.541556 TCAAAACATGACACGTGACGA 58.458 42.857 25.01 7.57 31.50 4.20
321 322 2.930682 TCAAAACATGACACGTGACGAA 59.069 40.909 25.01 0.84 31.50 3.85
322 323 3.558006 TCAAAACATGACACGTGACGAAT 59.442 39.130 25.01 3.60 31.50 3.34
323 324 3.519908 AAACATGACACGTGACGAATG 57.480 42.857 25.01 18.09 0.00 2.67
324 325 1.428448 ACATGACACGTGACGAATGG 58.572 50.000 25.01 7.52 0.00 3.16
325 326 0.095245 CATGACACGTGACGAATGGC 59.905 55.000 25.01 2.57 0.00 4.40
326 327 0.037326 ATGACACGTGACGAATGGCT 60.037 50.000 25.01 0.00 0.00 4.75
327 328 0.943835 TGACACGTGACGAATGGCTG 60.944 55.000 25.01 0.00 0.00 4.85
328 329 0.666274 GACACGTGACGAATGGCTGA 60.666 55.000 25.01 0.00 0.00 4.26
329 330 0.667487 ACACGTGACGAATGGCTGAG 60.667 55.000 25.01 0.00 0.00 3.35
330 331 0.388520 CACGTGACGAATGGCTGAGA 60.389 55.000 13.70 0.00 0.00 3.27
331 332 0.109086 ACGTGACGAATGGCTGAGAG 60.109 55.000 13.70 0.00 0.00 3.20
332 333 1.416813 CGTGACGAATGGCTGAGAGC 61.417 60.000 0.00 0.00 41.46 4.09
333 334 1.153765 TGACGAATGGCTGAGAGCG 60.154 57.895 0.00 0.00 43.62 5.03
334 335 2.510238 ACGAATGGCTGAGAGCGC 60.510 61.111 0.00 0.00 43.62 5.92
335 336 3.624300 CGAATGGCTGAGAGCGCG 61.624 66.667 0.00 0.00 43.62 6.86
336 337 3.934684 GAATGGCTGAGAGCGCGC 61.935 66.667 26.66 26.66 43.62 6.86
341 342 3.503363 GCTGAGAGCGCGCCAAAT 61.503 61.111 30.33 9.44 0.00 2.32
342 343 2.402388 CTGAGAGCGCGCCAAATG 59.598 61.111 30.33 12.20 0.00 2.32
343 344 2.047370 TGAGAGCGCGCCAAATGA 60.047 55.556 30.33 3.97 0.00 2.57
344 345 2.301902 CTGAGAGCGCGCCAAATGAC 62.302 60.000 30.33 12.83 0.00 3.06
345 346 3.425938 GAGAGCGCGCCAAATGACG 62.426 63.158 30.33 0.00 0.00 4.35
351 352 4.983090 CGCCAAATGACGCTGATC 57.017 55.556 0.00 0.00 0.00 2.92
352 353 1.011904 CGCCAAATGACGCTGATCG 60.012 57.895 0.00 0.00 45.38 3.69
361 362 3.601981 CGCTGATCGTTACGAGGC 58.398 61.111 14.09 15.15 39.91 4.70
362 363 1.064296 CGCTGATCGTTACGAGGCT 59.936 57.895 14.09 0.00 39.91 4.58
363 364 0.930742 CGCTGATCGTTACGAGGCTC 60.931 60.000 14.09 3.87 39.91 4.70
364 365 0.595310 GCTGATCGTTACGAGGCTCC 60.595 60.000 14.09 0.84 39.91 4.70
365 366 0.030908 CTGATCGTTACGAGGCTCCC 59.969 60.000 14.09 0.00 39.91 4.30
366 367 1.008767 GATCGTTACGAGGCTCCCG 60.009 63.158 14.09 6.56 39.91 5.14
367 368 1.442526 GATCGTTACGAGGCTCCCGA 61.443 60.000 14.09 11.72 39.91 5.14
368 369 1.033746 ATCGTTACGAGGCTCCCGAA 61.034 55.000 14.09 0.00 39.91 4.30
369 370 1.213537 CGTTACGAGGCTCCCGAAA 59.786 57.895 9.32 0.00 0.00 3.46
370 371 0.388907 CGTTACGAGGCTCCCGAAAA 60.389 55.000 9.32 0.00 0.00 2.29
371 372 1.799544 GTTACGAGGCTCCCGAAAAA 58.200 50.000 9.32 0.00 0.00 1.94
372 373 1.730612 GTTACGAGGCTCCCGAAAAAG 59.269 52.381 9.32 0.00 0.00 2.27
373 374 0.390735 TACGAGGCTCCCGAAAAAGC 60.391 55.000 9.32 0.00 37.80 3.51
374 375 2.740714 CGAGGCTCCCGAAAAAGCG 61.741 63.158 9.32 0.00 39.47 4.68
375 376 3.040414 GAGGCTCCCGAAAAAGCGC 62.040 63.158 2.15 0.00 39.47 5.92
376 377 3.056328 GGCTCCCGAAAAAGCGCT 61.056 61.111 2.64 2.64 39.47 5.92
377 378 2.481009 GCTCCCGAAAAAGCGCTC 59.519 61.111 12.06 0.00 0.00 5.03
378 379 2.035442 GCTCCCGAAAAAGCGCTCT 61.035 57.895 12.06 0.00 0.00 4.09
379 380 0.739813 GCTCCCGAAAAAGCGCTCTA 60.740 55.000 12.06 0.00 0.00 2.43
380 381 1.281899 CTCCCGAAAAAGCGCTCTAG 58.718 55.000 12.06 0.34 0.00 2.43
381 382 0.108329 TCCCGAAAAAGCGCTCTAGG 60.108 55.000 12.06 10.36 0.00 3.02
382 383 0.391263 CCCGAAAAAGCGCTCTAGGT 60.391 55.000 12.06 0.00 0.00 3.08
383 384 0.721718 CCGAAAAAGCGCTCTAGGTG 59.278 55.000 12.06 0.00 0.00 4.00
384 385 1.429463 CGAAAAAGCGCTCTAGGTGT 58.571 50.000 12.06 0.00 0.00 4.16
385 386 1.798813 CGAAAAAGCGCTCTAGGTGTT 59.201 47.619 12.06 0.00 0.00 3.32
386 387 2.159827 CGAAAAAGCGCTCTAGGTGTTC 60.160 50.000 12.06 4.43 0.00 3.18
387 388 2.841442 AAAAGCGCTCTAGGTGTTCT 57.159 45.000 12.06 0.00 0.00 3.01
388 389 2.371910 AAAGCGCTCTAGGTGTTCTC 57.628 50.000 12.06 0.00 0.00 2.87
389 390 0.171455 AAGCGCTCTAGGTGTTCTCG 59.829 55.000 12.06 0.00 0.00 4.04
390 391 1.874466 GCGCTCTAGGTGTTCTCGC 60.874 63.158 0.00 0.00 0.00 5.03
391 392 1.226717 CGCTCTAGGTGTTCTCGCC 60.227 63.158 0.00 0.00 43.92 5.54
397 398 3.319198 GGTGTTCTCGCCTCCCCA 61.319 66.667 0.00 0.00 40.73 4.96
415 416 2.222027 CCATCGGGAAGAAGTAATGCC 58.778 52.381 0.00 0.00 35.59 4.40
469 470 0.404812 AGGTGTCTCGTAGTCCTGGT 59.595 55.000 0.00 0.00 0.00 4.00
481 482 1.072505 TCCTGGTCTTGCCGGTTTC 59.927 57.895 1.90 0.00 42.20 2.78
496 497 0.802607 GTTTCGAGGACCAGCTAGCG 60.803 60.000 9.55 4.28 0.00 4.26
500 501 0.238817 CGAGGACCAGCTAGCGATAC 59.761 60.000 9.55 0.00 0.00 2.24
508 541 2.417719 CAGCTAGCGATACAAATCCCC 58.582 52.381 9.55 0.00 0.00 4.81
519 552 2.589157 AAATCCCCACGCCGTCTCA 61.589 57.895 0.00 0.00 0.00 3.27
521 554 2.119484 AATCCCCACGCCGTCTCAAA 62.119 55.000 0.00 0.00 0.00 2.69
523 556 3.423154 CCCACGCCGTCTCAAAGC 61.423 66.667 0.00 0.00 0.00 3.51
526 559 0.460284 CCACGCCGTCTCAAAGCTAT 60.460 55.000 0.00 0.00 0.00 2.97
528 561 0.530744 ACGCCGTCTCAAAGCTATCA 59.469 50.000 0.00 0.00 0.00 2.15
530 563 1.789464 CGCCGTCTCAAAGCTATCATC 59.211 52.381 0.00 0.00 0.00 2.92
544 577 1.051812 ATCATCACCATCGTCTCCCC 58.948 55.000 0.00 0.00 0.00 4.81
687 723 2.322081 GCCGAGGTAAGCACGCAAA 61.322 57.895 0.00 0.00 0.00 3.68
688 724 1.787847 CCGAGGTAAGCACGCAAAG 59.212 57.895 0.00 0.00 0.00 2.77
689 725 0.949105 CCGAGGTAAGCACGCAAAGT 60.949 55.000 0.00 0.00 0.00 2.66
691 727 0.796927 GAGGTAAGCACGCAAAGTCC 59.203 55.000 0.00 0.00 0.00 3.85
692 728 0.396811 AGGTAAGCACGCAAAGTCCT 59.603 50.000 0.00 0.00 0.00 3.85
693 729 0.796927 GGTAAGCACGCAAAGTCCTC 59.203 55.000 0.00 0.00 0.00 3.71
695 731 2.143925 GTAAGCACGCAAAGTCCTCTT 58.856 47.619 0.00 0.00 35.14 2.85
696 732 0.947244 AAGCACGCAAAGTCCTCTTG 59.053 50.000 0.00 0.00 33.79 3.02
713 749 5.098893 CCTCTTGTCATTCTCGTCAACTAG 58.901 45.833 0.00 0.00 0.00 2.57
731 767 2.580597 CAGATCTCGCGCGCAGAA 60.581 61.111 32.61 15.57 0.00 3.02
739 775 1.082756 CGCGCGCAGAAGAAAAACT 60.083 52.632 32.61 0.00 0.00 2.66
778 814 5.063880 GTCTTTTCTTTCCTTAGCTGTGGA 58.936 41.667 0.00 0.04 0.00 4.02
794 830 3.806316 GTGGACAACACTAAATCCGTG 57.194 47.619 0.00 0.00 46.72 4.94
829 865 9.254133 GGTCGATTTAAGTTATTACTACTTCCC 57.746 37.037 0.00 0.00 37.12 3.97
854 890 1.083489 CAAGAATTACTGCCCGCGAA 58.917 50.000 8.23 0.00 0.00 4.70
924 960 2.032860 ATCTGCATCGGGGAGGTTCG 62.033 60.000 0.00 0.00 35.32 3.95
928 964 2.050269 CATCGGGGAGGTTCGCTAT 58.950 57.895 0.00 0.00 0.00 2.97
970 1006 5.863397 CGTGTTGATTTTATTGCAGACCAAT 59.137 36.000 0.00 0.00 45.75 3.16
992 1028 2.067013 GACTGCTTCGAGTTTGGGTAC 58.933 52.381 0.00 0.00 0.00 3.34
1031 1067 5.008980 CAGAAAAAGAGAGGAAGATTGCCT 58.991 41.667 0.00 0.00 38.81 4.75
1054 1090 8.289618 GCCTATATCATGCGTTAATCTCAAAAA 58.710 33.333 0.00 0.00 0.00 1.94
1075 1111 4.109877 AGAGAGGGGAATATTGCCATTG 57.890 45.455 25.37 0.00 40.96 2.82
1283 1319 2.746375 CCCCCAAGATAGCACCGCT 61.746 63.158 0.00 0.00 43.41 5.52
1526 1571 0.951040 CTGCCACCTTTCCGTCACTC 60.951 60.000 0.00 0.00 0.00 3.51
1564 1609 1.075748 GGGCTGGGATTTGATGCCT 60.076 57.895 0.00 0.00 41.98 4.75
1920 1986 3.582647 TGTACTCATCCACACCATTGTCT 59.417 43.478 0.00 0.00 31.66 3.41
1968 2034 1.342672 GCCCCGGGACATTAGGAGAA 61.343 60.000 26.32 0.00 0.00 2.87
1983 2049 3.982516 AGGAGAACACCTAGTGCAGATA 58.017 45.455 0.00 0.00 38.65 1.98
2079 2148 1.202973 CGGATCGTAGCTCTTGTGCG 61.203 60.000 0.00 0.00 38.13 5.34
2184 2256 1.812235 CAGGCACTAGCATGTCAACA 58.188 50.000 0.00 0.00 46.75 3.33
2217 2289 1.926561 TCGCTACTAGCATGCACAAG 58.073 50.000 21.98 16.01 42.58 3.16
2386 2458 2.605338 CCGGTGCATGAAACAGTTGAAG 60.605 50.000 0.00 0.00 0.00 3.02
2449 2521 3.728076 TGGTATCCATCGAGCTTGTAC 57.272 47.619 0.00 0.00 0.00 2.90
2549 2632 8.173542 AGATGTTGATTATCATTTAGCATGCA 57.826 30.769 21.98 2.77 0.00 3.96
2567 2650 6.810182 AGCATGCAGAAGTTATTTCATGTTTC 59.190 34.615 21.98 0.00 38.31 2.78
2612 2695 4.697352 ACACACATTGATCCTTCACTTAGC 59.303 41.667 0.00 0.00 0.00 3.09
2899 3042 6.306356 GTGTTTCTGCATGTATAAAGTGCTTG 59.694 38.462 0.00 1.86 39.52 4.01
3000 3143 6.714278 TGTTTAAGTGGGTTCTATTAGGTCC 58.286 40.000 0.00 0.00 0.00 4.46
3035 3178 0.036732 TGGGTAGGCACAAGCTCTTG 59.963 55.000 7.99 7.99 45.58 3.02
3036 3179 0.678048 GGGTAGGCACAAGCTCTTGG 60.678 60.000 13.48 4.63 44.45 3.61
3037 3180 0.036875 GGTAGGCACAAGCTCTTGGT 59.963 55.000 13.48 0.00 44.45 3.67
3038 3181 1.545651 GGTAGGCACAAGCTCTTGGTT 60.546 52.381 13.48 0.22 44.45 3.67
3039 3182 1.807142 GTAGGCACAAGCTCTTGGTTC 59.193 52.381 13.48 3.28 44.45 3.62
3040 3183 0.475906 AGGCACAAGCTCTTGGTTCT 59.524 50.000 13.48 5.20 44.45 3.01
3041 3184 1.133668 AGGCACAAGCTCTTGGTTCTT 60.134 47.619 13.48 0.00 44.45 2.52
3086 3229 6.857964 AGCTTCTGATCGTTTAAACATTTGTG 59.142 34.615 18.07 1.12 0.00 3.33
3121 5985 6.264518 ACCACTCTTATTGGTTTGTTGGTAAG 59.735 38.462 0.00 0.00 45.62 2.34
3123 5987 7.360361 CACTCTTATTGGTTTGTTGGTAAGAC 58.640 38.462 0.00 0.00 0.00 3.01
3270 6134 1.353091 GGGGGAGTGTCTCTCAACTT 58.647 55.000 4.41 0.00 44.40 2.66
3322 6186 6.811253 TTACAATAGGGCACAAAGTTAGTG 57.189 37.500 0.00 0.00 39.92 2.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.095059 CGGTTTTTGCTTCCATGAGAGG 60.095 50.000 0.00 0.00 0.00 3.69
1 2 2.554032 ACGGTTTTTGCTTCCATGAGAG 59.446 45.455 0.00 0.00 0.00 3.20
2 3 2.293122 CACGGTTTTTGCTTCCATGAGA 59.707 45.455 0.00 0.00 0.00 3.27
3 4 2.293122 TCACGGTTTTTGCTTCCATGAG 59.707 45.455 0.00 0.00 0.00 2.90
4 5 2.034053 GTCACGGTTTTTGCTTCCATGA 59.966 45.455 0.00 0.00 0.00 3.07
5 6 2.034558 AGTCACGGTTTTTGCTTCCATG 59.965 45.455 0.00 0.00 0.00 3.66
6 7 2.293399 GAGTCACGGTTTTTGCTTCCAT 59.707 45.455 0.00 0.00 0.00 3.41
7 8 1.673920 GAGTCACGGTTTTTGCTTCCA 59.326 47.619 0.00 0.00 0.00 3.53
8 9 1.001706 GGAGTCACGGTTTTTGCTTCC 60.002 52.381 0.00 0.00 0.00 3.46
9 10 1.001706 GGGAGTCACGGTTTTTGCTTC 60.002 52.381 0.00 0.00 0.00 3.86
10 11 1.029681 GGGAGTCACGGTTTTTGCTT 58.970 50.000 0.00 0.00 0.00 3.91
11 12 1.164041 CGGGAGTCACGGTTTTTGCT 61.164 55.000 6.97 0.00 0.00 3.91
12 13 1.281656 CGGGAGTCACGGTTTTTGC 59.718 57.895 6.97 0.00 0.00 3.68
13 14 1.281656 GCGGGAGTCACGGTTTTTG 59.718 57.895 18.04 0.00 0.00 2.44
14 15 2.248835 CGCGGGAGTCACGGTTTTT 61.249 57.895 18.04 0.00 0.00 1.94
15 16 2.647680 TTCGCGGGAGTCACGGTTTT 62.648 55.000 18.04 0.00 0.00 2.43
16 17 2.647680 TTTCGCGGGAGTCACGGTTT 62.648 55.000 18.04 0.00 0.00 3.27
17 18 3.154584 TTTCGCGGGAGTCACGGTT 62.155 57.895 18.04 0.00 0.00 4.44
18 19 3.569049 CTTTCGCGGGAGTCACGGT 62.569 63.158 18.04 0.00 0.00 4.83
19 20 2.758770 TTCTTTCGCGGGAGTCACGG 62.759 60.000 18.04 6.93 0.00 4.94
20 21 0.942410 TTTCTTTCGCGGGAGTCACG 60.942 55.000 11.33 11.33 0.00 4.35
21 22 1.223187 TTTTCTTTCGCGGGAGTCAC 58.777 50.000 6.13 0.00 0.00 3.67
22 23 1.956297 TTTTTCTTTCGCGGGAGTCA 58.044 45.000 6.13 0.00 0.00 3.41
56 57 0.875059 GGTTTTGCTTCCGTGAGAGG 59.125 55.000 0.00 0.00 0.00 3.69
57 58 0.512952 CGGTTTTGCTTCCGTGAGAG 59.487 55.000 0.00 0.00 41.58 3.20
58 59 2.612200 CGGTTTTGCTTCCGTGAGA 58.388 52.632 0.00 0.00 41.58 3.27
64 65 3.308530 CAAGAATCACGGTTTTGCTTCC 58.691 45.455 0.00 0.00 0.00 3.46
65 66 2.726241 GCAAGAATCACGGTTTTGCTTC 59.274 45.455 0.66 0.00 40.58 3.86
66 67 2.742774 GCAAGAATCACGGTTTTGCTT 58.257 42.857 0.66 0.00 40.58 3.91
67 68 1.334960 CGCAAGAATCACGGTTTTGCT 60.335 47.619 6.04 0.00 41.34 3.91
68 69 1.052287 CGCAAGAATCACGGTTTTGC 58.948 50.000 0.00 0.00 40.40 3.68
84 85 6.311445 TGTTTTCTGTTATTTTTGCTTTCGCA 59.689 30.769 0.00 0.00 46.24 5.10
85 86 6.623353 GTGTTTTCTGTTATTTTTGCTTTCGC 59.377 34.615 0.00 0.00 0.00 4.70
86 87 6.833880 CGTGTTTTCTGTTATTTTTGCTTTCG 59.166 34.615 0.00 0.00 0.00 3.46
87 88 7.671827 ACGTGTTTTCTGTTATTTTTGCTTTC 58.328 30.769 0.00 0.00 0.00 2.62
88 89 7.589574 ACGTGTTTTCTGTTATTTTTGCTTT 57.410 28.000 0.00 0.00 0.00 3.51
89 90 7.589574 AACGTGTTTTCTGTTATTTTTGCTT 57.410 28.000 0.00 0.00 0.00 3.91
90 91 7.589574 AAACGTGTTTTCTGTTATTTTTGCT 57.410 28.000 0.00 0.00 0.00 3.91
104 105 4.321480 CGAAAACGGAAGAAAACGTGTTTT 59.679 37.500 10.29 10.29 40.32 2.43
105 106 3.847457 CGAAAACGGAAGAAAACGTGTTT 59.153 39.130 0.00 0.00 40.32 2.83
106 107 3.419004 CGAAAACGGAAGAAAACGTGTT 58.581 40.909 0.00 0.00 42.67 3.32
107 108 2.788750 GCGAAAACGGAAGAAAACGTGT 60.789 45.455 0.00 0.00 43.31 4.49
108 109 1.771291 GCGAAAACGGAAGAAAACGTG 59.229 47.619 0.00 0.00 43.31 4.49
109 110 1.592830 CGCGAAAACGGAAGAAAACGT 60.593 47.619 0.00 0.00 46.48 3.99
110 111 1.032080 CGCGAAAACGGAAGAAAACG 58.968 50.000 0.00 0.00 0.00 3.60
111 112 2.295696 CTCGCGAAAACGGAAGAAAAC 58.704 47.619 11.33 0.00 0.00 2.43
112 113 1.262151 CCTCGCGAAAACGGAAGAAAA 59.738 47.619 11.33 0.00 0.00 2.29
113 114 0.863144 CCTCGCGAAAACGGAAGAAA 59.137 50.000 11.33 0.00 0.00 2.52
114 115 1.562575 GCCTCGCGAAAACGGAAGAA 61.563 55.000 15.64 0.00 0.00 2.52
115 116 2.025418 GCCTCGCGAAAACGGAAGA 61.025 57.895 15.64 0.00 0.00 2.87
116 117 2.314647 TGCCTCGCGAAAACGGAAG 61.315 57.895 15.64 0.00 0.00 3.46
117 118 2.280254 TGCCTCGCGAAAACGGAA 60.280 55.556 15.64 2.26 0.00 4.30
118 119 3.039588 GTGCCTCGCGAAAACGGA 61.040 61.111 15.64 0.00 0.00 4.69
119 120 4.424430 CGTGCCTCGCGAAAACGG 62.424 66.667 22.78 16.47 39.94 4.44
120 121 4.424430 CCGTGCCTCGCGAAAACG 62.424 66.667 23.28 23.28 39.94 3.60
121 122 4.736631 GCCGTGCCTCGCGAAAAC 62.737 66.667 11.33 7.85 39.94 2.43
135 136 4.717629 TTGCGAGAGTCACGGCCG 62.718 66.667 26.86 26.86 0.00 6.13
136 137 1.901650 CTTTTGCGAGAGTCACGGCC 61.902 60.000 11.95 0.00 0.00 6.13
137 138 1.493311 CTTTTGCGAGAGTCACGGC 59.507 57.895 11.95 5.00 0.00 5.68
138 139 0.319555 TCCTTTTGCGAGAGTCACGG 60.320 55.000 11.95 0.00 0.00 4.94
139 140 1.497991 TTCCTTTTGCGAGAGTCACG 58.502 50.000 5.53 5.53 0.00 4.35
140 141 3.963383 TTTTCCTTTTGCGAGAGTCAC 57.037 42.857 0.00 0.00 0.00 3.67
184 185 5.091261 TGCCTTAGCTTTTCAACCAAAAA 57.909 34.783 0.00 0.00 40.80 1.94
185 186 4.404073 TCTGCCTTAGCTTTTCAACCAAAA 59.596 37.500 0.00 0.00 40.80 2.44
186 187 3.957497 TCTGCCTTAGCTTTTCAACCAAA 59.043 39.130 0.00 0.00 40.80 3.28
187 188 3.317993 GTCTGCCTTAGCTTTTCAACCAA 59.682 43.478 0.00 0.00 40.80 3.67
188 189 2.884639 GTCTGCCTTAGCTTTTCAACCA 59.115 45.455 0.00 0.00 40.80 3.67
189 190 2.229062 GGTCTGCCTTAGCTTTTCAACC 59.771 50.000 0.00 0.00 40.80 3.77
190 191 2.095718 CGGTCTGCCTTAGCTTTTCAAC 60.096 50.000 0.00 0.00 40.80 3.18
191 192 2.151202 CGGTCTGCCTTAGCTTTTCAA 58.849 47.619 0.00 0.00 40.80 2.69
192 193 1.610624 CCGGTCTGCCTTAGCTTTTCA 60.611 52.381 0.00 0.00 40.80 2.69
193 194 1.087501 CCGGTCTGCCTTAGCTTTTC 58.912 55.000 0.00 0.00 40.80 2.29
194 195 0.400594 ACCGGTCTGCCTTAGCTTTT 59.599 50.000 0.00 0.00 40.80 2.27
195 196 0.321653 CACCGGTCTGCCTTAGCTTT 60.322 55.000 2.59 0.00 40.80 3.51
196 197 1.296715 CACCGGTCTGCCTTAGCTT 59.703 57.895 2.59 0.00 40.80 3.74
197 198 2.660064 CCACCGGTCTGCCTTAGCT 61.660 63.158 2.59 0.00 40.80 3.32
198 199 2.125106 CCACCGGTCTGCCTTAGC 60.125 66.667 2.59 0.00 40.48 3.09
199 200 0.323629 TTTCCACCGGTCTGCCTTAG 59.676 55.000 2.59 0.00 0.00 2.18
200 201 0.766131 TTTTCCACCGGTCTGCCTTA 59.234 50.000 2.59 0.00 0.00 2.69
201 202 0.822121 GTTTTCCACCGGTCTGCCTT 60.822 55.000 2.59 0.00 0.00 4.35
202 203 1.228154 GTTTTCCACCGGTCTGCCT 60.228 57.895 2.59 0.00 0.00 4.75
203 204 2.265904 GGTTTTCCACCGGTCTGCC 61.266 63.158 2.59 0.00 40.31 4.85
204 205 3.351450 GGTTTTCCACCGGTCTGC 58.649 61.111 2.59 0.00 40.31 4.26
232 233 9.445878 TTTAAACGGTTATTTTTCTGGGTTTTT 57.554 25.926 0.00 0.00 0.00 1.94
233 234 9.445878 TTTTAAACGGTTATTTTTCTGGGTTTT 57.554 25.926 0.00 0.00 0.00 2.43
234 235 9.445878 TTTTTAAACGGTTATTTTTCTGGGTTT 57.554 25.926 0.00 0.00 0.00 3.27
235 236 9.100554 CTTTTTAAACGGTTATTTTTCTGGGTT 57.899 29.630 0.00 0.00 0.00 4.11
236 237 7.225145 GCTTTTTAAACGGTTATTTTTCTGGGT 59.775 33.333 0.00 0.00 0.00 4.51
237 238 7.307514 GGCTTTTTAAACGGTTATTTTTCTGGG 60.308 37.037 0.00 0.00 0.00 4.45
238 239 7.567952 CGGCTTTTTAAACGGTTATTTTTCTGG 60.568 37.037 0.00 0.00 0.00 3.86
239 240 7.167801 TCGGCTTTTTAAACGGTTATTTTTCTG 59.832 33.333 0.00 0.00 0.00 3.02
240 241 7.201835 TCGGCTTTTTAAACGGTTATTTTTCT 58.798 30.769 0.00 0.00 0.00 2.52
241 242 7.392234 TCGGCTTTTTAAACGGTTATTTTTC 57.608 32.000 0.00 0.00 0.00 2.29
242 243 7.767745 TTCGGCTTTTTAAACGGTTATTTTT 57.232 28.000 0.00 0.00 0.00 1.94
243 244 7.767745 TTTCGGCTTTTTAAACGGTTATTTT 57.232 28.000 0.00 0.00 0.00 1.82
244 245 7.514903 CGTTTTCGGCTTTTTAAACGGTTATTT 60.515 33.333 10.17 0.00 45.26 1.40
245 246 6.074941 CGTTTTCGGCTTTTTAAACGGTTATT 60.075 34.615 10.17 0.00 45.26 1.40
246 247 5.399006 CGTTTTCGGCTTTTTAAACGGTTAT 59.601 36.000 10.17 0.00 45.26 1.89
247 248 4.732442 CGTTTTCGGCTTTTTAAACGGTTA 59.268 37.500 10.17 0.00 45.26 2.85
248 249 3.547068 CGTTTTCGGCTTTTTAAACGGTT 59.453 39.130 10.17 0.00 45.26 4.44
249 250 3.107407 CGTTTTCGGCTTTTTAAACGGT 58.893 40.909 10.17 0.00 45.26 4.83
250 251 3.739484 CGTTTTCGGCTTTTTAAACGG 57.261 42.857 10.17 0.00 45.26 4.44
252 253 2.531103 ACGCGTTTTCGGCTTTTTAAAC 59.469 40.909 5.58 0.00 44.29 2.01
253 254 2.530700 CACGCGTTTTCGGCTTTTTAAA 59.469 40.909 10.22 0.00 44.29 1.52
254 255 2.110226 CACGCGTTTTCGGCTTTTTAA 58.890 42.857 10.22 0.00 44.29 1.52
255 256 1.063764 ACACGCGTTTTCGGCTTTTTA 59.936 42.857 10.22 0.00 44.29 1.52
256 257 0.179158 ACACGCGTTTTCGGCTTTTT 60.179 45.000 10.22 0.00 44.29 1.94
257 258 0.863957 CACACGCGTTTTCGGCTTTT 60.864 50.000 10.22 0.00 44.29 2.27
258 259 1.298041 CACACGCGTTTTCGGCTTT 60.298 52.632 10.22 0.00 44.29 3.51
259 260 1.707239 TTCACACGCGTTTTCGGCTT 61.707 50.000 10.22 0.00 44.29 4.35
260 261 1.707239 TTTCACACGCGTTTTCGGCT 61.707 50.000 10.22 0.00 44.29 5.52
261 262 0.862283 TTTTCACACGCGTTTTCGGC 60.862 50.000 10.22 0.00 44.29 5.54
262 263 1.536149 TTTTTCACACGCGTTTTCGG 58.464 45.000 10.22 0.00 44.29 4.30
281 282 4.904253 TGAACGTTTCCTTCGGATTTTT 57.096 36.364 0.46 0.00 0.00 1.94
282 283 4.904253 TTGAACGTTTCCTTCGGATTTT 57.096 36.364 0.46 0.00 0.00 1.82
283 284 4.904253 TTTGAACGTTTCCTTCGGATTT 57.096 36.364 0.46 0.00 0.00 2.17
284 285 4.096682 TGTTTTGAACGTTTCCTTCGGATT 59.903 37.500 0.46 0.00 0.00 3.01
285 286 3.628487 TGTTTTGAACGTTTCCTTCGGAT 59.372 39.130 0.46 0.00 0.00 4.18
286 287 3.008330 TGTTTTGAACGTTTCCTTCGGA 58.992 40.909 0.46 0.00 0.00 4.55
287 288 3.408288 TGTTTTGAACGTTTCCTTCGG 57.592 42.857 0.46 0.00 0.00 4.30
288 289 4.436523 GTCATGTTTTGAACGTTTCCTTCG 59.563 41.667 0.46 0.00 35.70 3.79
289 290 5.229260 GTGTCATGTTTTGAACGTTTCCTTC 59.771 40.000 0.46 0.00 35.70 3.46
290 291 5.099575 GTGTCATGTTTTGAACGTTTCCTT 58.900 37.500 0.46 0.00 35.70 3.36
291 292 4.668289 GTGTCATGTTTTGAACGTTTCCT 58.332 39.130 0.46 0.00 35.70 3.36
292 293 3.480668 CGTGTCATGTTTTGAACGTTTCC 59.519 43.478 0.46 0.00 35.70 3.13
293 294 4.028830 CACGTGTCATGTTTTGAACGTTTC 60.029 41.667 7.58 0.00 43.23 2.78
294 295 3.849145 CACGTGTCATGTTTTGAACGTTT 59.151 39.130 7.58 0.00 43.23 3.60
295 296 3.125487 TCACGTGTCATGTTTTGAACGTT 59.875 39.130 16.51 0.00 43.23 3.99
296 297 2.673862 TCACGTGTCATGTTTTGAACGT 59.326 40.909 16.51 0.00 44.86 3.99
297 298 3.026349 GTCACGTGTCATGTTTTGAACG 58.974 45.455 16.51 0.00 40.98 3.95
298 299 3.026349 CGTCACGTGTCATGTTTTGAAC 58.974 45.455 16.51 0.32 35.70 3.18
299 300 2.930682 TCGTCACGTGTCATGTTTTGAA 59.069 40.909 16.51 0.00 35.70 2.69
300 301 2.541556 TCGTCACGTGTCATGTTTTGA 58.458 42.857 16.51 0.00 0.00 2.69
301 302 3.311788 TTCGTCACGTGTCATGTTTTG 57.688 42.857 16.51 0.00 0.00 2.44
302 303 3.303725 CCATTCGTCACGTGTCATGTTTT 60.304 43.478 16.51 0.00 0.00 2.43
303 304 2.223144 CCATTCGTCACGTGTCATGTTT 59.777 45.455 16.51 0.00 0.00 2.83
304 305 1.798223 CCATTCGTCACGTGTCATGTT 59.202 47.619 16.51 0.00 0.00 2.71
305 306 1.428448 CCATTCGTCACGTGTCATGT 58.572 50.000 16.51 0.00 0.00 3.21
306 307 0.095245 GCCATTCGTCACGTGTCATG 59.905 55.000 16.51 10.34 0.00 3.07
307 308 0.037326 AGCCATTCGTCACGTGTCAT 60.037 50.000 16.51 0.00 0.00 3.06
308 309 0.943835 CAGCCATTCGTCACGTGTCA 60.944 55.000 16.51 0.00 0.00 3.58
309 310 0.666274 TCAGCCATTCGTCACGTGTC 60.666 55.000 16.51 9.31 0.00 3.67
310 311 0.667487 CTCAGCCATTCGTCACGTGT 60.667 55.000 16.51 0.00 0.00 4.49
311 312 0.388520 TCTCAGCCATTCGTCACGTG 60.389 55.000 9.94 9.94 0.00 4.49
312 313 0.109086 CTCTCAGCCATTCGTCACGT 60.109 55.000 0.00 0.00 0.00 4.49
313 314 1.416813 GCTCTCAGCCATTCGTCACG 61.417 60.000 0.00 0.00 34.48 4.35
314 315 1.416813 CGCTCTCAGCCATTCGTCAC 61.417 60.000 0.00 0.00 38.18 3.67
315 316 1.153765 CGCTCTCAGCCATTCGTCA 60.154 57.895 0.00 0.00 38.18 4.35
316 317 2.520904 GCGCTCTCAGCCATTCGTC 61.521 63.158 0.00 0.00 38.18 4.20
317 318 2.510238 GCGCTCTCAGCCATTCGT 60.510 61.111 0.00 0.00 38.18 3.85
318 319 3.624300 CGCGCTCTCAGCCATTCG 61.624 66.667 5.56 0.00 38.18 3.34
319 320 3.934684 GCGCGCTCTCAGCCATTC 61.935 66.667 26.67 0.00 38.18 2.67
324 325 3.503363 ATTTGGCGCGCTCTCAGC 61.503 61.111 32.29 13.79 38.02 4.26
325 326 2.102438 TCATTTGGCGCGCTCTCAG 61.102 57.895 32.29 18.11 0.00 3.35
326 327 2.047370 TCATTTGGCGCGCTCTCA 60.047 55.556 32.29 18.24 0.00 3.27
327 328 2.401195 GTCATTTGGCGCGCTCTC 59.599 61.111 32.29 15.45 0.00 3.20
328 329 3.490759 CGTCATTTGGCGCGCTCT 61.491 61.111 32.29 10.28 35.94 4.09
335 336 4.983090 CGATCAGCGTCATTTGGC 57.017 55.556 0.00 0.00 34.64 4.52
345 346 0.595310 GGAGCCTCGTAACGATCAGC 60.595 60.000 0.00 0.00 34.61 4.26
346 347 0.030908 GGGAGCCTCGTAACGATCAG 59.969 60.000 0.00 0.00 34.61 2.90
347 348 1.721664 CGGGAGCCTCGTAACGATCA 61.722 60.000 0.00 0.00 34.61 2.92
348 349 1.008767 CGGGAGCCTCGTAACGATC 60.009 63.158 0.00 0.00 34.61 3.69
349 350 1.033746 TTCGGGAGCCTCGTAACGAT 61.034 55.000 0.00 0.00 34.61 3.73
350 351 1.243342 TTTCGGGAGCCTCGTAACGA 61.243 55.000 0.00 0.00 0.00 3.85
351 352 0.388907 TTTTCGGGAGCCTCGTAACG 60.389 55.000 0.00 0.00 0.00 3.18
352 353 1.730612 CTTTTTCGGGAGCCTCGTAAC 59.269 52.381 0.00 0.00 0.00 2.50
353 354 1.942586 GCTTTTTCGGGAGCCTCGTAA 60.943 52.381 0.00 0.00 32.80 3.18
354 355 0.390735 GCTTTTTCGGGAGCCTCGTA 60.391 55.000 0.00 0.00 32.80 3.43
355 356 1.671379 GCTTTTTCGGGAGCCTCGT 60.671 57.895 0.00 0.00 32.80 4.18
356 357 2.740714 CGCTTTTTCGGGAGCCTCG 61.741 63.158 0.00 0.00 35.49 4.63
357 358 3.040414 GCGCTTTTTCGGGAGCCTC 62.040 63.158 0.00 0.00 35.49 4.70
358 359 3.056328 GCGCTTTTTCGGGAGCCT 61.056 61.111 0.00 0.00 35.49 4.58
359 360 3.040414 GAGCGCTTTTTCGGGAGCC 62.040 63.158 13.26 0.00 35.49 4.70
360 361 0.739813 TAGAGCGCTTTTTCGGGAGC 60.740 55.000 13.26 0.00 35.58 4.70
361 362 1.281899 CTAGAGCGCTTTTTCGGGAG 58.718 55.000 13.26 0.00 0.00 4.30
362 363 0.108329 CCTAGAGCGCTTTTTCGGGA 60.108 55.000 13.26 0.00 0.00 5.14
363 364 0.391263 ACCTAGAGCGCTTTTTCGGG 60.391 55.000 13.26 11.02 0.00 5.14
364 365 0.721718 CACCTAGAGCGCTTTTTCGG 59.278 55.000 13.26 10.12 0.00 4.30
365 366 1.429463 ACACCTAGAGCGCTTTTTCG 58.571 50.000 13.26 1.32 0.00 3.46
366 367 3.067833 AGAACACCTAGAGCGCTTTTTC 58.932 45.455 13.26 6.27 0.00 2.29
367 368 3.067833 GAGAACACCTAGAGCGCTTTTT 58.932 45.455 13.26 2.94 0.00 1.94
368 369 2.689646 GAGAACACCTAGAGCGCTTTT 58.310 47.619 13.26 5.91 0.00 2.27
369 370 1.402984 CGAGAACACCTAGAGCGCTTT 60.403 52.381 13.26 9.07 0.00 3.51
370 371 0.171455 CGAGAACACCTAGAGCGCTT 59.829 55.000 13.26 4.13 0.00 4.68
371 372 1.803943 CGAGAACACCTAGAGCGCT 59.196 57.895 11.27 11.27 0.00 5.92
372 373 1.874466 GCGAGAACACCTAGAGCGC 60.874 63.158 0.00 0.00 36.12 5.92
373 374 1.226717 GGCGAGAACACCTAGAGCG 60.227 63.158 0.00 0.00 0.00 5.03
374 375 0.101579 GAGGCGAGAACACCTAGAGC 59.898 60.000 0.00 0.00 36.05 4.09
375 376 0.741915 GGAGGCGAGAACACCTAGAG 59.258 60.000 0.00 0.00 36.05 2.43
376 377 0.683504 GGGAGGCGAGAACACCTAGA 60.684 60.000 0.00 0.00 36.05 2.43
377 378 1.677637 GGGGAGGCGAGAACACCTAG 61.678 65.000 0.00 0.00 36.05 3.02
378 379 1.684734 GGGGAGGCGAGAACACCTA 60.685 63.158 0.00 0.00 36.05 3.08
379 380 3.003763 GGGGAGGCGAGAACACCT 61.004 66.667 0.00 0.00 39.65 4.00
380 381 2.595009 GATGGGGAGGCGAGAACACC 62.595 65.000 0.00 0.00 0.00 4.16
381 382 1.153349 GATGGGGAGGCGAGAACAC 60.153 63.158 0.00 0.00 0.00 3.32
382 383 2.721167 CGATGGGGAGGCGAGAACA 61.721 63.158 0.00 0.00 0.00 3.18
383 384 2.107141 CGATGGGGAGGCGAGAAC 59.893 66.667 0.00 0.00 0.00 3.01
384 385 3.154473 CCGATGGGGAGGCGAGAA 61.154 66.667 0.00 0.00 38.47 2.87
394 395 2.222027 GCATTACTTCTTCCCGATGGG 58.778 52.381 0.00 0.00 46.11 4.00
395 396 2.222027 GGCATTACTTCTTCCCGATGG 58.778 52.381 0.00 0.00 0.00 3.51
396 397 2.874701 CTGGCATTACTTCTTCCCGATG 59.125 50.000 0.00 0.00 0.00 3.84
397 398 2.746472 GCTGGCATTACTTCTTCCCGAT 60.746 50.000 0.00 0.00 0.00 4.18
411 412 1.648116 AATTCAGTTTGGGCTGGCAT 58.352 45.000 2.88 0.00 37.12 4.40
412 413 1.070445 CAAATTCAGTTTGGGCTGGCA 59.930 47.619 2.88 0.00 42.79 4.92
460 461 0.834687 AACCGGCAAGACCAGGACTA 60.835 55.000 0.00 0.00 39.03 2.59
469 470 1.005394 GTCCTCGAAACCGGCAAGA 60.005 57.895 0.00 0.00 0.00 3.02
481 482 0.238817 GTATCGCTAGCTGGTCCTCG 59.761 60.000 13.93 0.00 0.00 4.63
496 497 0.463116 ACGGCGTGGGGATTTGTATC 60.463 55.000 13.76 0.00 0.00 2.24
500 501 2.046314 AGACGGCGTGGGGATTTG 60.046 61.111 21.19 0.00 0.00 2.32
508 541 0.924090 GATAGCTTTGAGACGGCGTG 59.076 55.000 21.19 2.02 0.00 5.34
519 552 4.502259 GGAGACGATGGTGATGATAGCTTT 60.502 45.833 0.00 0.00 0.00 3.51
521 554 2.560542 GGAGACGATGGTGATGATAGCT 59.439 50.000 0.00 0.00 0.00 3.32
523 556 2.232452 GGGGAGACGATGGTGATGATAG 59.768 54.545 0.00 0.00 0.00 2.08
526 559 1.048724 GGGGGAGACGATGGTGATGA 61.049 60.000 0.00 0.00 0.00 2.92
528 561 3.971894 GGGGGAGACGATGGTGAT 58.028 61.111 0.00 0.00 0.00 3.06
544 577 1.282157 AGGAACAGAGAATTTCCCGGG 59.718 52.381 16.85 16.85 42.14 5.73
596 632 1.025113 GGAGCTAAGGGTTTGGCGTC 61.025 60.000 0.00 0.00 44.63 5.19
687 723 3.157881 TGACGAGAATGACAAGAGGACT 58.842 45.455 0.00 0.00 0.00 3.85
688 724 3.577649 TGACGAGAATGACAAGAGGAC 57.422 47.619 0.00 0.00 0.00 3.85
689 725 3.574396 AGTTGACGAGAATGACAAGAGGA 59.426 43.478 0.00 0.00 0.00 3.71
691 727 4.560819 GCTAGTTGACGAGAATGACAAGAG 59.439 45.833 0.00 0.00 0.00 2.85
692 728 4.022329 TGCTAGTTGACGAGAATGACAAGA 60.022 41.667 0.00 0.00 0.00 3.02
693 729 4.237724 TGCTAGTTGACGAGAATGACAAG 58.762 43.478 0.00 0.00 0.00 3.16
695 731 3.506067 TCTGCTAGTTGACGAGAATGACA 59.494 43.478 0.00 0.00 0.00 3.58
696 732 4.098055 TCTGCTAGTTGACGAGAATGAC 57.902 45.455 0.00 0.00 0.00 3.06
731 767 5.392165 CGACGAGATCTGGTAGAGTTTTTCT 60.392 44.000 10.66 0.00 40.06 2.52
739 775 2.983907 AGACGACGAGATCTGGTAGA 57.016 50.000 21.51 0.00 0.00 2.59
787 823 4.196626 TCGACCTTGAATAACACGGATT 57.803 40.909 0.00 0.00 39.86 3.01
820 856 9.503399 CAGTAATTCTTGTTTTAGGGAAGTAGT 57.497 33.333 0.00 0.00 0.00 2.73
821 857 8.451748 GCAGTAATTCTTGTTTTAGGGAAGTAG 58.548 37.037 0.00 0.00 0.00 2.57
822 858 7.392393 GGCAGTAATTCTTGTTTTAGGGAAGTA 59.608 37.037 0.00 0.00 0.00 2.24
823 859 6.208797 GGCAGTAATTCTTGTTTTAGGGAAGT 59.791 38.462 0.00 0.00 0.00 3.01
824 860 6.350194 GGGCAGTAATTCTTGTTTTAGGGAAG 60.350 42.308 0.00 0.00 0.00 3.46
825 861 5.479027 GGGCAGTAATTCTTGTTTTAGGGAA 59.521 40.000 0.00 0.00 0.00 3.97
826 862 5.014202 GGGCAGTAATTCTTGTTTTAGGGA 58.986 41.667 0.00 0.00 0.00 4.20
827 863 4.142469 CGGGCAGTAATTCTTGTTTTAGGG 60.142 45.833 0.00 0.00 0.00 3.53
828 864 4.674362 GCGGGCAGTAATTCTTGTTTTAGG 60.674 45.833 0.00 0.00 0.00 2.69
829 865 4.412207 GCGGGCAGTAATTCTTGTTTTAG 58.588 43.478 0.00 0.00 0.00 1.85
830 866 3.120130 CGCGGGCAGTAATTCTTGTTTTA 60.120 43.478 0.00 0.00 0.00 1.52
831 867 2.351350 CGCGGGCAGTAATTCTTGTTTT 60.351 45.455 0.00 0.00 0.00 2.43
832 868 1.199097 CGCGGGCAGTAATTCTTGTTT 59.801 47.619 0.00 0.00 0.00 2.83
833 869 0.802494 CGCGGGCAGTAATTCTTGTT 59.198 50.000 0.00 0.00 0.00 2.83
834 870 0.036765 TCGCGGGCAGTAATTCTTGT 60.037 50.000 6.13 0.00 0.00 3.16
835 871 1.083489 TTCGCGGGCAGTAATTCTTG 58.917 50.000 6.13 0.00 0.00 3.02
836 872 1.816074 TTTCGCGGGCAGTAATTCTT 58.184 45.000 6.13 0.00 0.00 2.52
924 960 2.229302 CGGACCTTAGCCTACTGATAGC 59.771 54.545 0.00 0.00 0.00 2.97
928 964 1.381928 CGCGGACCTTAGCCTACTGA 61.382 60.000 0.00 0.00 0.00 3.41
970 1006 1.134220 ACCCAAACTCGAAGCAGTCAA 60.134 47.619 0.00 0.00 0.00 3.18
992 1028 2.214387 TCTGCTACACATGATCTGCG 57.786 50.000 0.00 0.00 0.00 5.18
1054 1090 3.753193 GCAATGGCAATATTCCCCTCTCT 60.753 47.826 0.00 0.00 40.72 3.10
1075 1111 1.455217 AAGCAGAGGATGGCATGGC 60.455 57.895 13.29 13.29 0.00 4.40
1283 1319 3.494398 GGGTGAGACAAACAGTAGCTTCA 60.494 47.826 0.00 0.00 0.00 3.02
1526 1571 1.065102 CGGTAGATGTACACCTGACCG 59.935 57.143 18.05 18.05 41.96 4.79
1564 1609 4.850680 ACCACTTTGTACTTTCTTGTCCA 58.149 39.130 0.00 0.00 0.00 4.02
1920 1986 1.421268 ACAAACTCTGGACCTGATGCA 59.579 47.619 0.96 0.00 0.00 3.96
1968 2034 5.208890 TGGTTATCTATCTGCACTAGGTGT 58.791 41.667 0.00 0.00 35.75 4.16
1983 2049 3.118519 GGACCATACACGGTTGGTTATCT 60.119 47.826 4.58 0.00 46.14 1.98
2079 2148 1.725641 TGCGATGATTCAGTGACCAC 58.274 50.000 0.00 0.00 0.00 4.16
2184 2256 5.278758 GCTAGTAGCGATGAGGATCTTCTTT 60.279 44.000 6.36 0.00 37.16 2.52
2217 2289 3.990469 TCTTCTGAAACTTGTCGCAGATC 59.010 43.478 0.00 0.00 40.67 2.75
2386 2458 7.550906 AGGCAGAGTAGTTGACAATTTTATCTC 59.449 37.037 0.00 0.00 0.00 2.75
2408 2480 0.323629 CTAGTTTCGGTTGGGAGGCA 59.676 55.000 0.00 0.00 0.00 4.75
2567 2650 3.513912 TGTGTGTCCTCTACAAGGTATGG 59.486 47.826 0.00 0.00 46.32 2.74
2589 2672 4.697352 GCTAAGTGAAGGATCAATGTGTGT 59.303 41.667 0.00 0.00 37.30 3.72
2725 2808 3.672767 AACCAGTTACGGTCTCGATTT 57.327 42.857 0.03 0.00 38.76 2.17
2919 3062 6.138088 GGGCTTACTTAAGTTTGTTTACACG 58.862 40.000 14.49 0.00 35.75 4.49
3000 3143 5.163437 GCCTACCCATAGATTAACCCGATAG 60.163 48.000 0.00 0.00 0.00 2.08
3035 3178 9.959749 TCACAAGAAACAACAAATATAAGAACC 57.040 29.630 0.00 0.00 0.00 3.62
3037 3180 9.677567 GCTCACAAGAAACAACAAATATAAGAA 57.322 29.630 0.00 0.00 0.00 2.52
3038 3181 9.066892 AGCTCACAAGAAACAACAAATATAAGA 57.933 29.630 0.00 0.00 0.00 2.10
3039 3182 9.683069 AAGCTCACAAGAAACAACAAATATAAG 57.317 29.630 0.00 0.00 0.00 1.73
3040 3183 9.677567 GAAGCTCACAAGAAACAACAAATATAA 57.322 29.630 0.00 0.00 0.00 0.98
3041 3184 9.066892 AGAAGCTCACAAGAAACAACAAATATA 57.933 29.630 0.00 0.00 0.00 0.86
3098 5962 7.012894 TGTCTTACCAACAAACCAATAAGAGTG 59.987 37.037 0.00 0.00 31.21 3.51
3134 5998 8.159229 AGATAGACAATTAACTAACCCCAACT 57.841 34.615 0.00 0.00 0.00 3.16
3266 6130 5.590530 TGAATACAAAAGGCACACAAGTT 57.409 34.783 0.00 0.00 0.00 2.66
3270 6134 4.749099 GCATTTGAATACAAAAGGCACACA 59.251 37.500 0.00 0.00 46.77 3.72
3307 6171 1.534729 CTCCCACTAACTTTGTGCCC 58.465 55.000 0.00 0.00 34.38 5.36
3339 6203 9.788889 TGATAAGCTCATCATGTTTCTAATGAT 57.211 29.630 0.00 0.00 43.88 2.45
3377 6244 7.850268 TTGATGACAACACAATTTAACGATG 57.150 32.000 0.00 0.00 0.00 3.84


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.