Multiple sequence alignment - TraesCS7D01G148200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G148200 chr7D 100.000 6211 0 0 1 6211 95066073 95059863 0.000000e+00 11470.0
1 TraesCS7D01G148200 chr7D 82.418 1365 123 49 1340 2668 94936814 94938097 0.000000e+00 1083.0
2 TraesCS7D01G148200 chr7D 80.607 856 91 25 3630 4449 94938696 94939512 5.360000e-165 592.0
3 TraesCS7D01G148200 chr7D 87.018 493 46 8 4516 5008 94939510 94939984 1.970000e-149 540.0
4 TraesCS7D01G148200 chr7D 88.416 423 45 3 4029 4449 94796895 94797315 2.000000e-139 507.0
5 TraesCS7D01G148200 chr7D 84.861 502 52 7 4516 5008 94797313 94797799 9.360000e-133 484.0
6 TraesCS7D01G148200 chr7D 97.004 267 6 2 2937 3201 3891986 3891720 1.230000e-121 448.0
7 TraesCS7D01G148200 chr7D 96.970 264 6 2 2937 3198 561753241 561753504 5.710000e-120 442.0
8 TraesCS7D01G148200 chr7D 94.144 222 9 4 996 1216 94936562 94936780 9.980000e-88 335.0
9 TraesCS7D01G148200 chr7D 83.221 298 29 17 160 455 94935890 94936168 2.870000e-63 254.0
10 TraesCS7D01G148200 chr7D 83.197 244 33 6 986 1229 252000820 252000585 3.770000e-52 217.0
11 TraesCS7D01G148200 chr7D 94.245 139 7 1 3846 3984 94796752 94796889 1.750000e-50 211.0
12 TraesCS7D01G148200 chr7D 79.767 257 35 12 2434 2678 94793245 94793496 2.980000e-38 171.0
13 TraesCS7D01G148200 chr7D 97.297 74 2 0 1257 1330 95064744 95064817 6.540000e-25 126.0
14 TraesCS7D01G148200 chr7B 94.013 3040 132 20 3199 6211 49187426 49184410 0.000000e+00 4560.0
15 TraesCS7D01G148200 chr7B 93.096 1376 43 24 1394 2766 49188941 49187615 0.000000e+00 1967.0
16 TraesCS7D01G148200 chr7B 83.066 1494 129 64 1337 2761 49026778 49028216 0.000000e+00 1243.0
17 TraesCS7D01G148200 chr7B 84.673 933 56 34 9 925 49190260 49189399 0.000000e+00 850.0
18 TraesCS7D01G148200 chr7B 90.436 596 57 0 3887 4482 49033787 49034382 0.000000e+00 785.0
19 TraesCS7D01G148200 chr7B 95.221 272 10 1 994 1262 49189262 49188991 1.600000e-115 427.0
20 TraesCS7D01G148200 chr7B 94.286 245 12 1 996 1238 49026429 49026673 2.110000e-99 374.0
21 TraesCS7D01G148200 chr7B 89.123 285 26 1 3201 3485 153181925 153182204 3.560000e-92 350.0
22 TraesCS7D01G148200 chr7B 87.368 285 31 1 3201 3485 42360272 42359993 7.770000e-84 322.0
23 TraesCS7D01G148200 chr7B 96.257 187 7 0 2751 2937 49187597 49187411 2.170000e-79 307.0
24 TraesCS7D01G148200 chr7B 94.444 180 9 1 2758 2937 153181760 153181938 6.130000e-70 276.0
25 TraesCS7D01G148200 chr7B 78.678 469 39 30 161 605 49025637 49026068 7.990000e-64 255.0
26 TraesCS7D01G148200 chr7B 82.917 240 41 0 5776 6015 50680142 50680381 3.770000e-52 217.0
27 TraesCS7D01G148200 chr7B 83.784 111 16 2 1685 1793 677883223 677883113 3.060000e-18 104.0
28 TraesCS7D01G148200 chr7B 93.333 45 3 0 1324 1368 49188993 49188949 4.020000e-07 67.6
29 TraesCS7D01G148200 chr7A 91.499 1835 102 12 3646 5430 98733865 98732035 0.000000e+00 2475.0
30 TraesCS7D01G148200 chr7A 90.944 1314 59 27 1394 2677 98735780 98734497 0.000000e+00 1712.0
31 TraesCS7D01G148200 chr7A 85.171 1315 105 41 1387 2668 98098513 98099770 0.000000e+00 1266.0
32 TraesCS7D01G148200 chr7A 94.382 801 34 7 5421 6211 98731852 98731053 0.000000e+00 1219.0
33 TraesCS7D01G148200 chr7A 84.179 1163 94 47 1541 2668 98545926 98547033 0.000000e+00 1046.0
34 TraesCS7D01G148200 chr7A 85.185 945 59 32 1 920 98737119 98736231 0.000000e+00 894.0
35 TraesCS7D01G148200 chr7A 82.941 891 92 36 3630 4482 98547632 98548500 0.000000e+00 749.0
36 TraesCS7D01G148200 chr7A 92.821 390 20 3 3199 3587 98734248 98733866 5.440000e-155 558.0
37 TraesCS7D01G148200 chr7A 86.895 496 55 4 4519 5008 98548498 98548989 1.180000e-151 547.0
38 TraesCS7D01G148200 chr7A 86.373 499 59 3 4519 5008 98102377 98102875 2.550000e-148 536.0
39 TraesCS7D01G148200 chr7A 83.061 490 42 26 3701 4155 98101608 98102091 2.080000e-109 407.0
40 TraesCS7D01G148200 chr7A 80.128 624 46 36 276 889 98544613 98545168 1.620000e-105 394.0
41 TraesCS7D01G148200 chr7A 79.639 609 60 39 130 724 98097423 98097981 4.540000e-101 379.0
42 TraesCS7D01G148200 chr7A 88.848 269 23 5 994 1262 98736091 98735830 2.160000e-84 324.0
43 TraesCS7D01G148200 chr7A 87.912 273 16 7 996 1266 98098214 98098471 7.820000e-79 305.0
44 TraesCS7D01G148200 chr7A 95.187 187 9 0 2751 2937 98734419 98734233 4.710000e-76 296.0
45 TraesCS7D01G148200 chr7A 90.991 222 13 2 996 1216 98545328 98545543 6.090000e-75 292.0
46 TraesCS7D01G148200 chr7A 87.701 187 18 3 1353 1537 98545634 98545817 4.880000e-51 213.0
47 TraesCS7D01G148200 chr7A 95.522 67 2 1 2701 2766 98734503 98734437 8.520000e-19 106.0
48 TraesCS7D01G148200 chr7A 90.411 73 6 1 1262 1334 735744296 735744225 1.840000e-15 95.3
49 TraesCS7D01G148200 chr7A 90.411 73 6 1 1262 1334 735777193 735777122 1.840000e-15 95.3
50 TraesCS7D01G148200 chr4A 93.377 755 28 4 2015 2766 650174612 650173877 0.000000e+00 1098.0
51 TraesCS7D01G148200 chr4A 82.621 351 47 10 5687 6029 621741161 621740817 1.310000e-76 298.0
52 TraesCS7D01G148200 chr4A 93.333 180 12 0 2758 2937 670379069 670378890 3.690000e-67 267.0
53 TraesCS7D01G148200 chr4A 91.489 141 12 0 3345 3485 26836430 26836570 1.770000e-45 195.0
54 TraesCS7D01G148200 chr6D 96.981 265 6 2 2937 3199 79685617 79685353 1.590000e-120 444.0
55 TraesCS7D01G148200 chr6D 96.629 267 7 2 2937 3201 78503364 78503098 5.710000e-120 442.0
56 TraesCS7D01G148200 chr6D 96.970 264 6 2 2937 3198 157582513 157582776 5.710000e-120 442.0
57 TraesCS7D01G148200 chr4D 96.981 265 6 2 2937 3199 7929321 7929057 1.590000e-120 444.0
58 TraesCS7D01G148200 chr4D 91.892 74 0 1 1260 1327 84988006 84987933 1.420000e-16 99.0
59 TraesCS7D01G148200 chr3D 96.981 265 6 2 2937 3199 598164296 598164032 1.590000e-120 444.0
60 TraesCS7D01G148200 chr1D 96.617 266 6 3 2937 3199 7806795 7806530 7.390000e-119 438.0
61 TraesCS7D01G148200 chr1D 96.604 265 7 2 2937 3199 31044360 31044096 7.390000e-119 438.0
62 TraesCS7D01G148200 chr1D 81.961 255 28 8 991 1229 427771844 427772096 3.800000e-47 200.0
63 TraesCS7D01G148200 chr1D 84.571 175 18 6 1575 1740 429718781 429718955 1.390000e-36 165.0
64 TraesCS7D01G148200 chr6B 88.772 285 27 1 3201 3485 672452030 672452309 1.660000e-90 344.0
65 TraesCS7D01G148200 chr6B 93.889 180 11 0 2758 2937 672451864 672452043 7.930000e-69 272.0
66 TraesCS7D01G148200 chr6B 90.071 141 14 0 3345 3485 151353114 151353254 3.820000e-42 183.0
67 TraesCS7D01G148200 chr6B 94.393 107 6 0 3379 3485 85441483 85441589 1.390000e-36 165.0
68 TraesCS7D01G148200 chr1B 79.503 483 61 23 2302 2762 661036638 661037104 6.050000e-80 309.0
69 TraesCS7D01G148200 chr1B 91.935 124 10 0 3362 3485 31262338 31262461 2.300000e-39 174.0
70 TraesCS7D01G148200 chr1B 92.958 71 2 3 1261 1329 624981747 624981678 3.960000e-17 100.0
71 TraesCS7D01G148200 chr1B 91.781 73 2 3 1259 1330 262066422 262066491 1.420000e-16 99.0
72 TraesCS7D01G148200 chr1B 90.541 74 4 3 1255 1326 624981675 624981747 1.840000e-15 95.3
73 TraesCS7D01G148200 chr5B 86.397 272 36 1 5759 6029 690319082 690319353 4.710000e-76 296.0
74 TraesCS7D01G148200 chr5B 91.489 141 12 0 3345 3485 668067228 668067088 1.770000e-45 195.0
75 TraesCS7D01G148200 chr5B 97.143 35 1 0 858 892 622720196 622720162 6.720000e-05 60.2
76 TraesCS7D01G148200 chr6A 85.274 292 25 3 3207 3485 437701638 437701352 1.020000e-72 285.0
77 TraesCS7D01G148200 chr6A 94.475 181 10 0 2758 2938 437701810 437701630 4.740000e-71 279.0
78 TraesCS7D01G148200 chr4B 93.548 124 8 0 3362 3485 645501305 645501428 1.060000e-42 185.0
79 TraesCS7D01G148200 chr4B 93.548 124 8 0 3362 3485 663443677 663443800 1.060000e-42 185.0
80 TraesCS7D01G148200 chr4B 93.103 58 4 0 3396 3453 275871214 275871271 1.110000e-12 86.1
81 TraesCS7D01G148200 chr4B 100.000 31 0 0 858 888 15457924 15457894 2.420000e-04 58.4
82 TraesCS7D01G148200 chr1A 80.952 252 27 11 994 1229 585036730 585036484 4.950000e-41 180.0
83 TraesCS7D01G148200 chr1A 83.544 158 18 5 1575 1724 527184808 527184965 2.330000e-29 141.0
84 TraesCS7D01G148200 chr2B 89.855 138 14 0 3348 3485 123454861 123454724 1.780000e-40 178.0
85 TraesCS7D01G148200 chr3B 92.647 68 3 2 1260 1327 768672124 768672189 5.120000e-16 97.1
86 TraesCS7D01G148200 chr3B 92.647 68 3 2 1260 1327 768672189 768672124 5.120000e-16 97.1
87 TraesCS7D01G148200 chr3A 100.000 30 0 0 3987 4016 714093567 714093596 8.700000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G148200 chr7D 95059863 95066073 6210 True 11470.000000 11470 100.000000 1 6211 1 chr7D.!!$R2 6210
1 TraesCS7D01G148200 chr7D 94935890 94939984 4094 False 560.800000 1083 85.481600 160 5008 5 chr7D.!!$F4 4848
2 TraesCS7D01G148200 chr7D 94793245 94797799 4554 False 343.250000 507 86.822250 2434 5008 4 chr7D.!!$F3 2574
3 TraesCS7D01G148200 chr7B 49184410 49190260 5850 True 1363.100000 4560 92.765500 9 6211 6 chr7B.!!$R3 6202
4 TraesCS7D01G148200 chr7B 49033787 49034382 595 False 785.000000 785 90.436000 3887 4482 1 chr7B.!!$F1 595
5 TraesCS7D01G148200 chr7B 49025637 49028216 2579 False 624.000000 1243 85.343333 161 2761 3 chr7B.!!$F3 2600
6 TraesCS7D01G148200 chr7A 98731053 98737119 6066 True 948.000000 2475 91.798500 1 6211 8 chr7A.!!$R3 6210
7 TraesCS7D01G148200 chr7A 98097423 98102875 5452 False 578.600000 1266 84.431200 130 5008 5 chr7A.!!$F1 4878
8 TraesCS7D01G148200 chr7A 98544613 98548989 4376 False 540.166667 1046 85.472500 276 5008 6 chr7A.!!$F2 4732
9 TraesCS7D01G148200 chr4A 650173877 650174612 735 True 1098.000000 1098 93.377000 2015 2766 1 chr4A.!!$R2 751

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
351 360 0.248215 CTTTCCATCGCCATCGCAAC 60.248 55.000 0.00 0.0 35.26 4.17 F
449 491 1.002274 GCTTCCTCCTCCTCCTCCA 59.998 63.158 0.00 0.0 0.00 3.86 F
976 1066 1.114627 GGATTGGGTCAATTGGGAGC 58.885 55.000 5.42 0.0 33.90 4.70 F
2209 2661 1.309499 ACAGCGAGGAGGAAGACGAG 61.309 60.000 0.00 0.0 0.00 4.18 F
3028 4450 0.320374 CAGCCGGTTGTGGAGTCTTA 59.680 55.000 10.61 0.0 0.00 2.10 F
4156 8050 0.321564 TGTTCTAGCAGCAACGGCAT 60.322 50.000 0.00 0.0 44.61 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2146 2598 0.604780 CCCTGTTGCTCTGGTCACAG 60.605 60.000 0.0 0.0 46.30 3.66 R
2398 2875 2.213499 ACAACAGCAAGAGAAAGGACG 58.787 47.619 0.0 0.0 0.00 4.79 R
2524 3004 0.465705 GGCGATGATGGAAGACTGGA 59.534 55.000 0.0 0.0 0.00 3.86 R
3033 4455 0.390472 GCTGGACACACAGACTAGCC 60.390 60.000 0.0 0.0 39.75 3.93 R
4750 8647 1.209504 CACGAGGAAGGGGCAGAATTA 59.790 52.381 0.0 0.0 0.00 1.40 R
5819 9970 0.036010 ATCTTCACCTGACCAAGCCG 60.036 55.000 0.0 0.0 0.00 5.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 9.051259 AGTAGCATATATTCTCTCTCTCTCTCT 57.949 37.037 0.00 0.00 0.00 3.10
46 47 9.319143 GTAGCATATATTCTCTCTCTCTCTCTC 57.681 40.741 0.00 0.00 0.00 3.20
47 48 8.155620 AGCATATATTCTCTCTCTCTCTCTCT 57.844 38.462 0.00 0.00 0.00 3.10
48 49 8.263640 AGCATATATTCTCTCTCTCTCTCTCTC 58.736 40.741 0.00 0.00 0.00 3.20
49 50 8.263640 GCATATATTCTCTCTCTCTCTCTCTCT 58.736 40.741 0.00 0.00 0.00 3.10
50 51 9.814899 CATATATTCTCTCTCTCTCTCTCTCTC 57.185 40.741 0.00 0.00 0.00 3.20
61 62 4.206375 TCTCTCTCTCTCACATCACCATC 58.794 47.826 0.00 0.00 0.00 3.51
144 148 5.655532 AGAAATCAAATCACCAGGAATGGAG 59.344 40.000 0.31 0.00 0.00 3.86
171 175 1.080705 GGAGCAAGCAAGCAAGCAG 60.081 57.895 10.52 0.00 36.85 4.24
261 265 1.648191 CACCATATGCAAACGCAAACG 59.352 47.619 0.00 0.00 44.09 3.60
262 266 0.639756 CCATATGCAAACGCAAACGC 59.360 50.000 0.00 0.00 44.09 4.84
263 267 1.334994 CATATGCAAACGCAAACGCA 58.665 45.000 0.00 0.00 44.09 5.24
286 292 1.291588 CAGCGAGCACTTCCACTCT 59.708 57.895 0.00 0.00 0.00 3.24
316 324 1.271379 CCCCTATAAATCGGCCACCAG 60.271 57.143 2.24 0.00 0.00 4.00
347 356 0.451383 TTTGCTTTCCATCGCCATCG 59.549 50.000 0.00 0.00 0.00 3.84
349 358 2.472059 GCTTTCCATCGCCATCGCA 61.472 57.895 0.00 0.00 35.26 5.10
350 359 1.992233 GCTTTCCATCGCCATCGCAA 61.992 55.000 0.00 0.00 35.26 4.85
351 360 0.248215 CTTTCCATCGCCATCGCAAC 60.248 55.000 0.00 0.00 35.26 4.17
449 491 1.002274 GCTTCCTCCTCCTCCTCCA 59.998 63.158 0.00 0.00 0.00 3.86
454 496 1.454847 CTCCTCCTCCTCCACCTCG 60.455 68.421 0.00 0.00 0.00 4.63
457 499 2.045242 TCCTCCTCCACCTCGTCG 60.045 66.667 0.00 0.00 0.00 5.12
502 547 2.028043 GGTTGCTTGCTGTGGTGC 59.972 61.111 0.00 0.00 0.00 5.01
503 548 2.353839 GTTGCTTGCTGTGGTGCG 60.354 61.111 0.00 0.00 35.36 5.34
504 549 3.594775 TTGCTTGCTGTGGTGCGG 61.595 61.111 0.00 0.00 35.36 5.69
505 550 4.873810 TGCTTGCTGTGGTGCGGT 62.874 61.111 0.00 0.00 35.36 5.68
506 551 4.332637 GCTTGCTGTGGTGCGGTG 62.333 66.667 0.00 0.00 35.36 4.94
507 552 2.901840 CTTGCTGTGGTGCGGTGT 60.902 61.111 0.00 0.00 35.36 4.16
508 553 3.185082 CTTGCTGTGGTGCGGTGTG 62.185 63.158 0.00 0.00 35.36 3.82
511 556 4.935495 CTGTGGTGCGGTGTGGCT 62.935 66.667 0.00 0.00 0.00 4.75
581 628 2.645567 CGGAGTGTCGCTGTCTGT 59.354 61.111 0.00 0.00 0.00 3.41
605 652 3.078097 GTCTCTGCCTTTCTTCTTTCCC 58.922 50.000 0.00 0.00 0.00 3.97
751 800 3.131223 GTCCATTCTCGTCTCAATCTCCA 59.869 47.826 0.00 0.00 0.00 3.86
822 884 5.484290 TCTTCTCTCTTCCCGGAGTAATTTT 59.516 40.000 0.73 0.00 35.11 1.82
838 900 8.080417 GGAGTAATTTTGGTTCTAGGTTGTTTC 58.920 37.037 0.00 0.00 0.00 2.78
839 901 8.762481 AGTAATTTTGGTTCTAGGTTGTTTCT 57.238 30.769 0.00 0.00 0.00 2.52
840 902 9.197306 AGTAATTTTGGTTCTAGGTTGTTTCTT 57.803 29.630 0.00 0.00 0.00 2.52
841 903 9.811995 GTAATTTTGGTTCTAGGTTGTTTCTTT 57.188 29.630 0.00 0.00 0.00 2.52
842 904 8.716646 AATTTTGGTTCTAGGTTGTTTCTTTG 57.283 30.769 0.00 0.00 0.00 2.77
847 914 1.893137 CTAGGTTGTTTCTTTGGGGCC 59.107 52.381 0.00 0.00 0.00 5.80
912 983 6.171213 TCGATTAAAGTCCCCTTTCTTCTTC 58.829 40.000 0.00 0.00 41.18 2.87
922 993 6.375736 GTCCCCTTTCTTCTTCCTCTTAATTG 59.624 42.308 0.00 0.00 0.00 2.32
923 994 5.126222 CCCCTTTCTTCTTCCTCTTAATTGC 59.874 44.000 0.00 0.00 0.00 3.56
924 995 5.948758 CCCTTTCTTCTTCCTCTTAATTGCT 59.051 40.000 0.00 0.00 0.00 3.91
976 1066 1.114627 GGATTGGGTCAATTGGGAGC 58.885 55.000 5.42 0.00 33.90 4.70
980 1070 1.923356 TGGGTCAATTGGGAGCTTTC 58.077 50.000 5.42 0.00 35.67 2.62
992 1082 2.619147 GGAGCTTTCGTCTTTAGGGTC 58.381 52.381 0.00 0.00 0.00 4.46
1084 1229 3.000819 AGTTCCCCGTCGGCATGA 61.001 61.111 5.50 0.00 0.00 3.07
1186 1334 1.402456 GCCTGCTTGCACTTCATTCTG 60.402 52.381 0.00 0.00 0.00 3.02
1262 1480 8.100791 AGCTAGTCAATTGTGGTTTCACTTATA 58.899 33.333 5.13 0.00 43.94 0.98
1263 1481 8.175716 GCTAGTCAATTGTGGTTTCACTTATAC 58.824 37.037 5.13 0.00 43.94 1.47
1264 1482 9.436957 CTAGTCAATTGTGGTTTCACTTATACT 57.563 33.333 5.13 0.00 43.94 2.12
1265 1483 8.324163 AGTCAATTGTGGTTTCACTTATACTC 57.676 34.615 5.13 0.00 43.94 2.59
1266 1484 7.390718 AGTCAATTGTGGTTTCACTTATACTCC 59.609 37.037 5.13 0.00 43.94 3.85
1267 1485 6.657541 TCAATTGTGGTTTCACTTATACTCCC 59.342 38.462 5.13 0.00 43.94 4.30
1268 1486 5.836024 TTGTGGTTTCACTTATACTCCCT 57.164 39.130 0.00 0.00 43.94 4.20
1269 1487 5.416271 TGTGGTTTCACTTATACTCCCTC 57.584 43.478 0.00 0.00 43.94 4.30
1270 1488 4.224370 TGTGGTTTCACTTATACTCCCTCC 59.776 45.833 0.00 0.00 43.94 4.30
1271 1489 3.449737 TGGTTTCACTTATACTCCCTCCG 59.550 47.826 0.00 0.00 0.00 4.63
1272 1490 3.450096 GGTTTCACTTATACTCCCTCCGT 59.550 47.826 0.00 0.00 0.00 4.69
1273 1491 4.441217 GGTTTCACTTATACTCCCTCCGTC 60.441 50.000 0.00 0.00 0.00 4.79
1274 1492 2.941480 TCACTTATACTCCCTCCGTCC 58.059 52.381 0.00 0.00 0.00 4.79
1275 1493 1.962100 CACTTATACTCCCTCCGTCCC 59.038 57.143 0.00 0.00 0.00 4.46
1276 1494 1.572415 ACTTATACTCCCTCCGTCCCA 59.428 52.381 0.00 0.00 0.00 4.37
1277 1495 2.023695 ACTTATACTCCCTCCGTCCCAA 60.024 50.000 0.00 0.00 0.00 4.12
1278 1496 2.852714 TATACTCCCTCCGTCCCAAA 57.147 50.000 0.00 0.00 0.00 3.28
1279 1497 1.961133 ATACTCCCTCCGTCCCAAAA 58.039 50.000 0.00 0.00 0.00 2.44
1280 1498 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
1281 1499 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
1282 1500 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
1283 1501 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
1284 1502 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
1285 1503 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
1286 1504 2.290705 CCCTCCGTCCCAAAATAAGTGT 60.291 50.000 0.00 0.00 0.00 3.55
1287 1505 3.007635 CCTCCGTCCCAAAATAAGTGTC 58.992 50.000 0.00 0.00 0.00 3.67
1288 1506 3.307480 CCTCCGTCCCAAAATAAGTGTCT 60.307 47.826 0.00 0.00 0.00 3.41
1289 1507 4.324267 CTCCGTCCCAAAATAAGTGTCTT 58.676 43.478 0.00 0.00 0.00 3.01
1290 1508 5.484715 CTCCGTCCCAAAATAAGTGTCTTA 58.515 41.667 0.00 0.00 0.00 2.10
1291 1509 5.484715 TCCGTCCCAAAATAAGTGTCTTAG 58.515 41.667 0.00 0.00 0.00 2.18
1292 1510 5.012354 TCCGTCCCAAAATAAGTGTCTTAGT 59.988 40.000 0.00 0.00 0.00 2.24
1293 1511 6.211184 TCCGTCCCAAAATAAGTGTCTTAGTA 59.789 38.462 0.00 0.00 0.00 1.82
1294 1512 6.312180 CCGTCCCAAAATAAGTGTCTTAGTAC 59.688 42.308 0.00 0.00 0.00 2.73
1295 1513 6.869913 CGTCCCAAAATAAGTGTCTTAGTACA 59.130 38.462 0.00 0.00 0.00 2.90
1296 1514 7.385752 CGTCCCAAAATAAGTGTCTTAGTACAA 59.614 37.037 0.00 0.00 0.00 2.41
1297 1515 9.059260 GTCCCAAAATAAGTGTCTTAGTACAAA 57.941 33.333 0.00 0.00 0.00 2.83
1298 1516 9.280174 TCCCAAAATAAGTGTCTTAGTACAAAG 57.720 33.333 0.00 0.00 0.00 2.77
1299 1517 9.280174 CCCAAAATAAGTGTCTTAGTACAAAGA 57.720 33.333 0.00 0.00 33.10 2.52
1312 1530 9.280174 TCTTAGTACAAAGACACTTATTTTGGG 57.720 33.333 0.00 0.00 36.41 4.12
1313 1531 9.280174 CTTAGTACAAAGACACTTATTTTGGGA 57.720 33.333 0.00 0.00 36.41 4.37
1314 1532 7.506328 AGTACAAAGACACTTATTTTGGGAC 57.494 36.000 0.00 0.17 36.41 4.46
1315 1533 5.432885 ACAAAGACACTTATTTTGGGACG 57.567 39.130 1.88 0.00 36.41 4.79
1316 1534 4.277423 ACAAAGACACTTATTTTGGGACGG 59.723 41.667 1.88 0.00 36.41 4.79
1317 1535 4.360951 AAGACACTTATTTTGGGACGGA 57.639 40.909 0.00 0.00 0.00 4.69
1318 1536 3.939066 AGACACTTATTTTGGGACGGAG 58.061 45.455 0.00 0.00 0.00 4.63
1319 1537 3.007635 GACACTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
1320 1538 2.290705 ACACTTATTTTGGGACGGAGGG 60.291 50.000 0.00 0.00 0.00 4.30
1321 1539 2.026636 CACTTATTTTGGGACGGAGGGA 60.027 50.000 0.00 0.00 0.00 4.20
1322 1540 2.238898 ACTTATTTTGGGACGGAGGGAG 59.761 50.000 0.00 0.00 0.00 4.30
1323 1541 1.961133 TATTTTGGGACGGAGGGAGT 58.039 50.000 0.00 0.00 0.00 3.85
1324 1542 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
1325 1543 1.961133 TTTTGGGACGGAGGGAGTAT 58.039 50.000 0.00 0.00 0.00 2.12
1326 1544 2.852714 TTTGGGACGGAGGGAGTATA 57.147 50.000 0.00 0.00 0.00 1.47
1390 1652 9.794719 TCTGAACTGTACTACTATATAGTGCAT 57.205 33.333 23.09 11.77 38.94 3.96
1393 1655 9.130312 GAACTGTACTACTATATAGTGCATTGC 57.870 37.037 23.09 0.46 38.94 3.56
1485 1767 5.975344 CCATGTTCTGAAATGCATATCACAC 59.025 40.000 0.00 0.00 0.00 3.82
1520 1802 6.981762 AGAGATGATTTAACACTCTTGCAG 57.018 37.500 0.00 0.00 34.85 4.41
1592 2008 7.754924 AGTTTCAACAACAACTGTAAACTGATG 59.245 33.333 6.81 0.00 41.84 3.07
1741 2157 1.743252 GGACGGCTTCAAGCTCCTG 60.743 63.158 9.83 0.00 41.99 3.86
1798 2214 3.641436 TCAGTAAGCTCACAACTTCCTCA 59.359 43.478 0.00 0.00 0.00 3.86
1799 2215 4.284490 TCAGTAAGCTCACAACTTCCTCAT 59.716 41.667 0.00 0.00 0.00 2.90
1801 2217 4.999950 AGTAAGCTCACAACTTCCTCATTG 59.000 41.667 0.00 0.00 0.00 2.82
1807 2223 6.041296 AGCTCACAACTTCCTCATTGATTTTT 59.959 34.615 0.00 0.00 0.00 1.94
1808 2224 7.231317 AGCTCACAACTTCCTCATTGATTTTTA 59.769 33.333 0.00 0.00 0.00 1.52
1834 2251 6.548441 TTTGGGTACTTTGTTATTCAGTCG 57.452 37.500 0.00 0.00 0.00 4.18
1838 2255 4.449743 GGTACTTTGTTATTCAGTCGTGCA 59.550 41.667 0.00 0.00 0.00 4.57
1864 2301 1.495878 CTGCTGTCAGTCACTGTGTC 58.504 55.000 4.28 1.96 35.61 3.67
1870 2311 4.787563 GCTGTCAGTCACTGTGTCAAAATG 60.788 45.833 4.28 0.00 32.61 2.32
2209 2661 1.309499 ACAGCGAGGAGGAAGACGAG 61.309 60.000 0.00 0.00 0.00 4.18
2263 2721 4.373116 CCGAGGGTGGTGTGGTCG 62.373 72.222 0.00 0.00 0.00 4.79
2398 2875 2.674357 CAGCAAACCCATTTATGCTTGC 59.326 45.455 11.38 11.38 46.36 4.01
2525 3005 2.475200 GGCGACATGGCATTTACTTC 57.525 50.000 0.00 0.00 44.08 3.01
2526 3006 1.065551 GGCGACATGGCATTTACTTCC 59.934 52.381 0.00 0.00 44.08 3.46
2527 3007 1.742831 GCGACATGGCATTTACTTCCA 59.257 47.619 0.00 0.00 0.00 3.53
2528 3008 2.223340 GCGACATGGCATTTACTTCCAG 60.223 50.000 0.00 0.00 32.78 3.86
2529 3009 3.009723 CGACATGGCATTTACTTCCAGT 58.990 45.455 0.00 0.00 32.78 4.00
2850 4262 3.592059 TGCGGTTACATAGTTTCACCTC 58.408 45.455 0.00 0.00 0.00 3.85
2892 4304 5.281693 TGACAAGTTGAATATGTTCAGCG 57.718 39.130 10.54 3.63 46.43 5.18
2946 4368 8.887264 AGTTATACTGAATCTTCGGGATATCT 57.113 34.615 2.05 6.63 38.74 1.98
2947 4369 8.962679 AGTTATACTGAATCTTCGGGATATCTC 58.037 37.037 2.05 0.00 38.74 2.75
2948 4370 8.740906 GTTATACTGAATCTTCGGGATATCTCA 58.259 37.037 2.92 0.00 38.74 3.27
2949 4371 7.782897 ATACTGAATCTTCGGGATATCTCAA 57.217 36.000 2.92 0.00 35.34 3.02
2950 4372 5.848406 ACTGAATCTTCGGGATATCTCAAC 58.152 41.667 2.92 0.00 37.89 3.18
2951 4373 5.215252 TGAATCTTCGGGATATCTCAACC 57.785 43.478 2.92 0.00 33.71 3.77
2953 4375 1.961394 TCTTCGGGATATCTCAACCGG 59.039 52.381 15.37 0.00 45.97 5.28
2954 4376 1.687123 CTTCGGGATATCTCAACCGGT 59.313 52.381 15.37 0.00 45.97 5.28
2955 4377 1.784358 TCGGGATATCTCAACCGGTT 58.216 50.000 15.86 15.86 45.97 4.44
2956 4378 2.112998 TCGGGATATCTCAACCGGTTT 58.887 47.619 19.55 5.68 45.97 3.27
2957 4379 2.159014 TCGGGATATCTCAACCGGTTTG 60.159 50.000 19.55 13.87 45.97 2.93
2958 4380 2.572290 GGGATATCTCAACCGGTTTGG 58.428 52.381 19.55 13.41 46.41 3.28
2960 4382 3.181443 GGGATATCTCAACCGGTTTGGAT 60.181 47.826 25.45 25.45 42.00 3.41
2961 4383 3.815401 GGATATCTCAACCGGTTTGGATG 59.185 47.826 28.15 16.58 41.73 3.51
2962 4384 2.128771 ATCTCAACCGGTTTGGATGG 57.871 50.000 19.55 5.30 40.78 3.51
2964 4386 1.922135 CTCAACCGGTTTGGATGGCG 61.922 60.000 19.55 3.62 40.78 5.69
2966 4388 3.501040 AACCGGTTTGGATGGCGGT 62.501 57.895 15.86 0.00 42.00 5.68
2967 4389 3.131478 CCGGTTTGGATGGCGGTC 61.131 66.667 0.00 0.00 42.00 4.79
2968 4390 2.359354 CGGTTTGGATGGCGGTCA 60.359 61.111 0.00 0.00 0.00 4.02
2969 4391 1.748879 CGGTTTGGATGGCGGTCAT 60.749 57.895 0.00 0.00 39.13 3.06
2971 4393 0.965363 GGTTTGGATGGCGGTCATGT 60.965 55.000 0.00 0.00 35.97 3.21
2973 4395 2.088423 GTTTGGATGGCGGTCATGTAA 58.912 47.619 0.00 0.00 35.97 2.41
2974 4396 2.687935 GTTTGGATGGCGGTCATGTAAT 59.312 45.455 0.00 0.00 35.97 1.89
2976 4398 1.238439 GGATGGCGGTCATGTAATGG 58.762 55.000 0.00 0.00 46.73 3.16
2977 4399 1.202758 GGATGGCGGTCATGTAATGGA 60.203 52.381 0.00 0.00 46.73 3.41
2979 4401 3.307410 GGATGGCGGTCATGTAATGGATA 60.307 47.826 0.00 0.00 46.73 2.59
2980 4402 3.401033 TGGCGGTCATGTAATGGATAG 57.599 47.619 0.00 0.00 46.73 2.08
2982 4404 2.076863 GCGGTCATGTAATGGATAGGC 58.923 52.381 0.00 0.00 46.73 3.93
2983 4405 2.549992 GCGGTCATGTAATGGATAGGCA 60.550 50.000 0.00 0.00 46.73 4.75
2984 4406 3.738982 CGGTCATGTAATGGATAGGCAA 58.261 45.455 0.00 0.00 46.73 4.52
2985 4407 4.326826 CGGTCATGTAATGGATAGGCAAT 58.673 43.478 0.00 0.00 46.73 3.56
2986 4408 4.761739 CGGTCATGTAATGGATAGGCAATT 59.238 41.667 0.00 0.00 46.73 2.32
2987 4409 5.937540 CGGTCATGTAATGGATAGGCAATTA 59.062 40.000 0.00 0.00 46.73 1.40
2988 4410 6.092670 CGGTCATGTAATGGATAGGCAATTAG 59.907 42.308 0.00 0.00 46.73 1.73
2990 4412 7.448469 GGTCATGTAATGGATAGGCAATTAGTT 59.552 37.037 0.00 0.00 46.73 2.24
2991 4413 8.850156 GTCATGTAATGGATAGGCAATTAGTTT 58.150 33.333 0.00 0.00 46.73 2.66
2994 4416 8.685838 TGTAATGGATAGGCAATTAGTTTACC 57.314 34.615 0.00 0.00 0.00 2.85
2995 4417 8.499406 TGTAATGGATAGGCAATTAGTTTACCT 58.501 33.333 0.00 0.00 34.42 3.08
3012 4434 7.672240 AGTTTACCTATCTATCTTTAGCCAGC 58.328 38.462 0.00 0.00 0.00 4.85
3013 4435 6.607004 TTACCTATCTATCTTTAGCCAGCC 57.393 41.667 0.00 0.00 0.00 4.85
3014 4436 3.511934 ACCTATCTATCTTTAGCCAGCCG 59.488 47.826 0.00 0.00 0.00 5.52
3015 4437 3.118956 CCTATCTATCTTTAGCCAGCCGG 60.119 52.174 0.00 0.00 0.00 6.13
3016 4438 1.789523 TCTATCTTTAGCCAGCCGGT 58.210 50.000 1.90 0.00 33.28 5.28
3018 4440 2.158957 TCTATCTTTAGCCAGCCGGTTG 60.159 50.000 11.98 11.98 33.28 3.77
3019 4441 0.328258 ATCTTTAGCCAGCCGGTTGT 59.672 50.000 17.69 1.85 33.28 3.32
3021 4443 1.586154 CTTTAGCCAGCCGGTTGTGG 61.586 60.000 17.69 15.43 36.85 4.17
3022 4444 2.058125 TTTAGCCAGCCGGTTGTGGA 62.058 55.000 17.69 0.00 35.67 4.02
3023 4445 2.463589 TTAGCCAGCCGGTTGTGGAG 62.464 60.000 17.69 2.67 35.67 3.86
3024 4446 4.643387 GCCAGCCGGTTGTGGAGT 62.643 66.667 17.69 0.00 35.67 3.85
3025 4447 2.358737 CCAGCCGGTTGTGGAGTC 60.359 66.667 17.69 0.00 35.67 3.36
3026 4448 2.743718 CAGCCGGTTGTGGAGTCT 59.256 61.111 10.61 0.00 0.00 3.24
3027 4449 1.071471 CAGCCGGTTGTGGAGTCTT 59.929 57.895 10.61 0.00 0.00 3.01
3028 4450 0.320374 CAGCCGGTTGTGGAGTCTTA 59.680 55.000 10.61 0.00 0.00 2.10
3029 4451 1.066143 CAGCCGGTTGTGGAGTCTTAT 60.066 52.381 10.61 0.00 0.00 1.73
3031 4453 1.207329 GCCGGTTGTGGAGTCTTATCT 59.793 52.381 1.90 0.00 0.00 1.98
3032 4454 2.354805 GCCGGTTGTGGAGTCTTATCTT 60.355 50.000 1.90 0.00 0.00 2.40
3033 4455 3.262420 CCGGTTGTGGAGTCTTATCTTG 58.738 50.000 0.00 0.00 0.00 3.02
3034 4456 3.262420 CGGTTGTGGAGTCTTATCTTGG 58.738 50.000 0.00 0.00 0.00 3.61
3035 4457 3.010420 GGTTGTGGAGTCTTATCTTGGC 58.990 50.000 0.00 0.00 0.00 4.52
3036 4458 3.307762 GGTTGTGGAGTCTTATCTTGGCT 60.308 47.826 0.00 0.00 0.00 4.75
3038 4460 5.112686 GTTGTGGAGTCTTATCTTGGCTAG 58.887 45.833 0.00 0.00 0.00 3.42
3039 4461 4.353777 TGTGGAGTCTTATCTTGGCTAGT 58.646 43.478 0.00 0.00 0.00 2.57
3041 4463 4.647399 GTGGAGTCTTATCTTGGCTAGTCT 59.353 45.833 0.00 0.00 0.00 3.24
3042 4464 4.646945 TGGAGTCTTATCTTGGCTAGTCTG 59.353 45.833 0.00 0.00 0.00 3.51
3043 4465 4.647399 GGAGTCTTATCTTGGCTAGTCTGT 59.353 45.833 0.00 0.00 0.00 3.41
3044 4466 5.451242 GGAGTCTTATCTTGGCTAGTCTGTG 60.451 48.000 0.00 0.00 0.00 3.66
3045 4467 5.020132 AGTCTTATCTTGGCTAGTCTGTGT 58.980 41.667 0.00 0.00 0.00 3.72
3046 4468 5.105554 AGTCTTATCTTGGCTAGTCTGTGTG 60.106 44.000 0.00 0.00 0.00 3.82
3047 4469 4.772624 TCTTATCTTGGCTAGTCTGTGTGT 59.227 41.667 0.00 0.00 0.00 3.72
3048 4470 3.601443 ATCTTGGCTAGTCTGTGTGTC 57.399 47.619 0.00 0.00 0.00 3.67
3049 4471 1.618837 TCTTGGCTAGTCTGTGTGTCC 59.381 52.381 0.00 0.00 0.00 4.02
3050 4472 1.344438 CTTGGCTAGTCTGTGTGTCCA 59.656 52.381 0.00 0.00 0.00 4.02
3052 4474 0.390472 GGCTAGTCTGTGTGTCCAGC 60.390 60.000 0.00 0.00 32.32 4.85
3053 4475 0.390472 GCTAGTCTGTGTGTCCAGCC 60.390 60.000 0.00 0.00 32.32 4.85
3054 4476 1.261480 CTAGTCTGTGTGTCCAGCCT 58.739 55.000 0.00 0.00 32.32 4.58
3061 4483 1.270839 TGTGTGTCCAGCCTCTTTAGC 60.271 52.381 0.00 0.00 0.00 3.09
3062 4484 1.002544 GTGTGTCCAGCCTCTTTAGCT 59.997 52.381 0.00 0.00 42.70 3.32
3063 4485 1.276421 TGTGTCCAGCCTCTTTAGCTC 59.724 52.381 0.00 0.00 38.95 4.09
3064 4486 1.552792 GTGTCCAGCCTCTTTAGCTCT 59.447 52.381 0.00 0.00 38.95 4.09
3065 4487 2.761208 GTGTCCAGCCTCTTTAGCTCTA 59.239 50.000 0.00 0.00 38.95 2.43
3066 4488 3.386402 GTGTCCAGCCTCTTTAGCTCTAT 59.614 47.826 0.00 0.00 38.95 1.98
3067 4489 3.386078 TGTCCAGCCTCTTTAGCTCTATG 59.614 47.826 0.00 0.00 38.95 2.23
3069 4491 3.386078 TCCAGCCTCTTTAGCTCTATGTG 59.614 47.826 0.00 0.00 38.95 3.21
3070 4492 3.386078 CCAGCCTCTTTAGCTCTATGTGA 59.614 47.826 0.00 0.00 38.95 3.58
3071 4493 4.501229 CCAGCCTCTTTAGCTCTATGTGAG 60.501 50.000 0.00 0.00 45.33 3.51
3087 4509 9.593134 CTCTATGTGAGCTGTCTTTTTATTACT 57.407 33.333 0.00 0.00 35.84 2.24
3088 4510 9.944376 TCTATGTGAGCTGTCTTTTTATTACTT 57.056 29.630 0.00 0.00 0.00 2.24
3091 4513 9.899226 ATGTGAGCTGTCTTTTTATTACTTTTC 57.101 29.630 0.00 0.00 0.00 2.29
3092 4514 8.898761 TGTGAGCTGTCTTTTTATTACTTTTCA 58.101 29.630 0.00 0.00 0.00 2.69
3094 4516 9.120538 TGAGCTGTCTTTTTATTACTTTTCAGT 57.879 29.630 0.00 0.00 36.99 3.41
3095 4517 9.600646 GAGCTGTCTTTTTATTACTTTTCAGTC 57.399 33.333 0.00 0.00 34.06 3.51
3098 4520 8.665643 TGTCTTTTTATTACTTTTCAGTCGGA 57.334 30.769 0.00 0.00 34.06 4.55
3100 4522 8.985805 GTCTTTTTATTACTTTTCAGTCGGAGA 58.014 33.333 0.00 0.00 34.06 3.71
3113 4535 2.543777 TCGGAGACTTTGGAACCTTG 57.456 50.000 0.00 0.00 0.00 3.61
3114 4536 1.766496 TCGGAGACTTTGGAACCTTGT 59.234 47.619 0.00 0.00 0.00 3.16
3116 4538 2.290641 CGGAGACTTTGGAACCTTGTTG 59.709 50.000 0.00 0.00 0.00 3.33
3117 4539 2.623416 GGAGACTTTGGAACCTTGTTGG 59.377 50.000 0.00 0.00 42.93 3.77
3119 4541 3.951680 GAGACTTTGGAACCTTGTTGGAA 59.048 43.478 0.00 0.00 39.71 3.53
3120 4542 3.699538 AGACTTTGGAACCTTGTTGGAAC 59.300 43.478 0.00 0.00 39.71 3.62
3122 4544 2.838637 TTGGAACCTTGTTGGAACCT 57.161 45.000 0.00 0.00 39.71 3.50
3123 4545 2.838637 TGGAACCTTGTTGGAACCTT 57.161 45.000 0.00 0.00 39.71 3.50
3124 4546 3.108847 TGGAACCTTGTTGGAACCTTT 57.891 42.857 0.00 0.00 39.71 3.11
3125 4547 3.445987 TGGAACCTTGTTGGAACCTTTT 58.554 40.909 0.00 0.00 39.71 2.27
3126 4548 4.611367 TGGAACCTTGTTGGAACCTTTTA 58.389 39.130 0.00 0.00 39.71 1.52
3128 4550 5.663556 TGGAACCTTGTTGGAACCTTTTATT 59.336 36.000 0.00 0.00 39.71 1.40
3129 4551 6.157123 TGGAACCTTGTTGGAACCTTTTATTT 59.843 34.615 0.00 0.00 39.71 1.40
3130 4552 6.704493 GGAACCTTGTTGGAACCTTTTATTTC 59.296 38.462 0.00 0.00 39.71 2.17
3131 4553 5.838529 ACCTTGTTGGAACCTTTTATTTCG 58.161 37.500 0.00 0.00 39.71 3.46
3132 4554 4.684242 CCTTGTTGGAACCTTTTATTTCGC 59.316 41.667 0.00 0.00 38.35 4.70
3133 4555 5.508994 CCTTGTTGGAACCTTTTATTTCGCT 60.509 40.000 0.00 0.00 38.35 4.93
3134 4556 6.294286 CCTTGTTGGAACCTTTTATTTCGCTA 60.294 38.462 0.00 0.00 38.35 4.26
3135 4557 6.636562 TGTTGGAACCTTTTATTTCGCTAA 57.363 33.333 0.00 0.00 0.00 3.09
3136 4558 7.222000 TGTTGGAACCTTTTATTTCGCTAAT 57.778 32.000 0.00 0.00 0.00 1.73
3137 4559 8.338072 TGTTGGAACCTTTTATTTCGCTAATA 57.662 30.769 0.00 0.00 0.00 0.98
3138 4560 8.794553 TGTTGGAACCTTTTATTTCGCTAATAA 58.205 29.630 0.00 0.00 37.01 1.40
3139 4561 9.285770 GTTGGAACCTTTTATTTCGCTAATAAG 57.714 33.333 0.00 0.00 39.29 1.73
3140 4562 8.795842 TGGAACCTTTTATTTCGCTAATAAGA 57.204 30.769 0.00 0.36 39.29 2.10
3141 4563 9.403583 TGGAACCTTTTATTTCGCTAATAAGAT 57.596 29.630 0.00 0.00 39.29 2.40
3142 4564 9.665264 GGAACCTTTTATTTCGCTAATAAGATG 57.335 33.333 0.00 1.16 39.29 2.90
3143 4565 9.665264 GAACCTTTTATTTCGCTAATAAGATGG 57.335 33.333 0.00 8.30 39.29 3.51
3144 4566 7.649057 ACCTTTTATTTCGCTAATAAGATGGC 58.351 34.615 0.00 0.00 39.29 4.40
3145 4567 7.084486 CCTTTTATTTCGCTAATAAGATGGCC 58.916 38.462 0.00 0.00 39.29 5.36
3146 4568 5.856126 TTATTTCGCTAATAAGATGGCCG 57.144 39.130 0.00 0.00 34.53 6.13
3147 4569 2.902705 TTCGCTAATAAGATGGCCGT 57.097 45.000 0.00 0.00 0.00 5.68
3148 4570 4.325028 TTTCGCTAATAAGATGGCCGTA 57.675 40.909 0.00 0.00 0.00 4.02
3149 4571 4.530710 TTCGCTAATAAGATGGCCGTAT 57.469 40.909 0.00 0.00 0.00 3.06
3150 4572 3.845178 TCGCTAATAAGATGGCCGTATG 58.155 45.455 0.00 0.00 0.00 2.39
3151 4573 2.348666 CGCTAATAAGATGGCCGTATGC 59.651 50.000 0.00 0.00 40.16 3.14
3152 4574 3.334691 GCTAATAAGATGGCCGTATGCA 58.665 45.455 0.00 0.00 43.89 3.96
3153 4575 3.941483 GCTAATAAGATGGCCGTATGCAT 59.059 43.478 3.79 3.79 43.89 3.96
3154 4576 4.034510 GCTAATAAGATGGCCGTATGCATC 59.965 45.833 0.19 0.00 43.89 3.91
3155 4577 3.701205 ATAAGATGGCCGTATGCATCA 57.299 42.857 0.19 0.00 43.89 3.07
3156 4578 2.574006 AAGATGGCCGTATGCATCAT 57.426 45.000 0.19 0.00 43.89 2.45
3157 4579 2.574006 AGATGGCCGTATGCATCATT 57.426 45.000 0.19 0.00 43.89 2.57
3158 4580 2.430465 AGATGGCCGTATGCATCATTC 58.570 47.619 0.19 0.00 43.89 2.67
3159 4581 2.039480 AGATGGCCGTATGCATCATTCT 59.961 45.455 0.19 0.00 43.89 2.40
3160 4582 1.596603 TGGCCGTATGCATCATTCTG 58.403 50.000 0.19 0.00 43.89 3.02
3161 4583 1.140652 TGGCCGTATGCATCATTCTGA 59.859 47.619 0.19 0.00 43.89 3.27
3162 4584 2.224597 TGGCCGTATGCATCATTCTGAT 60.225 45.455 0.19 0.00 43.89 2.90
3176 4598 3.008517 TGATGCAGAGGCCGGGAA 61.009 61.111 2.18 0.00 40.13 3.97
3177 4599 2.203126 GATGCAGAGGCCGGGAAG 60.203 66.667 2.18 0.00 40.13 3.46
3179 4601 2.049627 GATGCAGAGGCCGGGAAGAT 62.050 60.000 2.18 0.00 40.13 2.40
3180 4602 2.049627 ATGCAGAGGCCGGGAAGATC 62.050 60.000 2.18 0.00 40.13 2.75
3181 4603 2.825264 CAGAGGCCGGGAAGATCC 59.175 66.667 2.18 0.00 35.23 3.36
3193 4615 3.081710 GGAAGATCCCCCTTTTCGAAA 57.918 47.619 6.47 6.47 0.00 3.46
3194 4616 3.427573 GGAAGATCCCCCTTTTCGAAAA 58.572 45.455 21.35 21.35 0.00 2.29
3195 4617 3.830178 GGAAGATCCCCCTTTTCGAAAAA 59.170 43.478 22.67 9.34 0.00 1.94
3277 4714 5.128827 TCATTCCCTCAACCATGTAGACTAC 59.871 44.000 5.62 5.62 0.00 2.73
3529 5631 8.082242 ACATTGTTTCACTTCTATAAAACTGCC 58.918 33.333 0.00 0.00 33.75 4.85
3573 5779 4.323485 CCCTGTCCAGATTACAAAGCTACA 60.323 45.833 0.00 0.00 0.00 2.74
3615 5848 9.595823 TTGTACTACCTCTGTCTTATATTTTGC 57.404 33.333 0.00 0.00 0.00 3.68
3772 6006 8.910351 ATTTTACTATATCCTGGAGTGCTTTC 57.090 34.615 1.52 0.00 0.00 2.62
3781 6015 3.411446 CTGGAGTGCTTTCATGTACCAA 58.589 45.455 0.00 0.00 0.00 3.67
3823 6069 7.865385 GGAAGCAGTTATCTCAAGACTGTATAG 59.135 40.741 4.85 0.00 42.07 1.31
4155 8049 1.070615 TGTTCTAGCAGCAACGGCA 59.929 52.632 0.00 0.00 44.61 5.69
4156 8050 0.321564 TGTTCTAGCAGCAACGGCAT 60.322 50.000 0.00 0.00 44.61 4.40
4159 8053 0.530650 TCTAGCAGCAACGGCATAGC 60.531 55.000 0.00 0.00 44.61 2.97
4232 8126 4.406456 ACAACCAACAGGCAGATTTATCA 58.594 39.130 0.00 0.00 0.00 2.15
4292 8186 2.562635 CAGCAGAAGTGGATCCATCAG 58.437 52.381 19.62 10.47 0.00 2.90
4317 8211 1.271001 CCAATGACCTGTGCTCTGTCA 60.271 52.381 12.01 12.01 0.00 3.58
4391 8285 2.924185 CAGTTCACTGCCACCAGAG 58.076 57.895 0.00 0.00 41.77 3.35
4430 8324 2.158623 TCCACACATCAAAGTTGGAGCT 60.159 45.455 0.00 0.00 0.00 4.09
4547 8441 3.141398 GTGTGCTCTTCCAATCAGTGAA 58.859 45.455 0.00 0.00 0.00 3.18
4560 8454 5.534654 CCAATCAGTGAAGGGTTTTCTGTTA 59.465 40.000 0.00 0.00 0.00 2.41
4600 8494 1.153901 CGTTCGATGGTACTGGCGT 60.154 57.895 0.00 0.00 0.00 5.68
4663 8557 6.271537 AGATGGACCAAAAGGGGATATTTTT 58.728 36.000 0.00 0.00 42.91 1.94
4674 8568 7.813087 AAGGGGATATTTTTGGAAAGAATGT 57.187 32.000 0.00 0.00 0.00 2.71
4768 8665 2.938956 ATAATTCTGCCCCTTCCTCG 57.061 50.000 0.00 0.00 0.00 4.63
4988 8900 4.036734 TGCAACTTTGATGGTCTTCTCAAC 59.963 41.667 0.00 0.00 31.41 3.18
5134 9080 4.156477 TGAACCCCTTTTCCGATTTCAAT 58.844 39.130 0.00 0.00 0.00 2.57
5217 9163 2.411904 GTGCCTGCATATGAGAGCTAC 58.588 52.381 6.97 3.23 0.00 3.58
5269 9215 4.037446 CAGACCTAGAGGAGATTGTACAGC 59.963 50.000 1.60 0.00 38.94 4.40
5372 9322 6.271159 AGGAATCTGTACTTTCTTTCTCCTGT 59.729 38.462 0.00 0.00 0.00 4.00
5382 9332 2.089980 CTTTCTCCTGTGAATGGGCAG 58.910 52.381 0.00 0.00 0.00 4.85
5400 9350 3.891366 GGCAGTGGAAGCAAATATATGGT 59.109 43.478 0.00 0.00 0.00 3.55
5465 9608 6.349300 AGAGCTCTAAAAACACAAACTCTGA 58.651 36.000 16.50 0.00 31.11 3.27
5468 9611 7.826690 AGCTCTAAAAACACAAACTCTGAAAA 58.173 30.769 0.00 0.00 0.00 2.29
5469 9612 8.470002 AGCTCTAAAAACACAAACTCTGAAAAT 58.530 29.630 0.00 0.00 0.00 1.82
5731 9875 2.111756 GATTTTTGATCATGCGACGGC 58.888 47.619 0.00 0.00 40.52 5.68
5755 9899 1.511768 GGGGAACGAAGAGTCTCGG 59.488 63.158 13.90 3.57 43.22 4.63
5756 9900 1.249469 GGGGAACGAAGAGTCTCGGT 61.249 60.000 13.90 8.95 42.70 4.69
5819 9970 1.217882 CGATTGTCGGCTTGGGTATC 58.782 55.000 0.00 0.00 36.00 2.24
5876 10027 3.999705 CTCCTGCAGCCCCTCCTCT 63.000 68.421 8.66 0.00 0.00 3.69
6007 10158 5.106791 ACAAAGAAGATCGAATTGTCAGCAG 60.107 40.000 0.00 0.00 28.61 4.24
6035 10186 8.610896 GTCAGATTAAATCATCTTCAGGAACAG 58.389 37.037 0.00 0.00 30.50 3.16
6061 10213 2.056223 GGGCTGATGTGCTTGGCAT 61.056 57.895 0.00 0.00 41.91 4.40
6063 10215 1.518572 GCTGATGTGCTTGGCATGC 60.519 57.895 17.62 17.62 41.91 4.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 3.514309 TGCTACTCCCTCTGGAAACTAAC 59.486 47.826 0.00 0.00 41.17 2.34
11 12 6.194235 AGAGAATATATGCTACTCCCTCTGG 58.806 44.000 0.00 0.00 0.00 3.86
45 46 1.483827 GCAGGATGGTGATGTGAGAGA 59.516 52.381 0.00 0.00 35.86 3.10
46 47 1.208776 TGCAGGATGGTGATGTGAGAG 59.791 52.381 0.00 0.00 35.86 3.20
47 48 1.278537 TGCAGGATGGTGATGTGAGA 58.721 50.000 0.00 0.00 35.86 3.27
48 49 2.343484 ATGCAGGATGGTGATGTGAG 57.657 50.000 0.00 0.00 35.86 3.51
49 50 2.812836 AATGCAGGATGGTGATGTGA 57.187 45.000 0.00 0.00 35.86 3.58
50 51 3.880047 AAAATGCAGGATGGTGATGTG 57.120 42.857 0.00 0.00 35.86 3.21
75 78 5.248640 ACATTTACTGTGGGATGAACTGAG 58.751 41.667 6.80 0.00 36.48 3.35
144 148 0.383949 TTGCTTGCTCCGGTTGTTTC 59.616 50.000 0.00 0.00 0.00 2.78
261 265 3.527360 AAGTGCTCGCTGCGTTTGC 62.527 57.895 22.48 22.29 46.63 3.68
262 266 1.439365 GAAGTGCTCGCTGCGTTTG 60.439 57.895 22.48 13.95 46.63 2.93
263 267 2.607892 GGAAGTGCTCGCTGCGTTT 61.608 57.895 22.48 9.63 46.63 3.60
286 292 4.283467 CCGATTTATAGGGGTCAGTCATCA 59.717 45.833 0.00 0.00 0.00 3.07
316 324 2.866156 GGAAAGCAAAGTTTTGGACTGC 59.134 45.455 6.72 0.00 39.00 4.40
349 358 4.035102 GGAAGGGGCGAGCAGGTT 62.035 66.667 0.00 0.00 0.00 3.50
351 360 4.785453 GTGGAAGGGGCGAGCAGG 62.785 72.222 0.00 0.00 0.00 4.85
449 491 1.895280 GAAGACGACGACGACGAGGT 61.895 60.000 25.15 10.76 42.66 3.85
454 496 1.074752 AGGTAGAAGACGACGACGAC 58.925 55.000 15.32 8.08 42.66 4.34
457 499 1.984297 GCAAAGGTAGAAGACGACGAC 59.016 52.381 0.00 0.00 0.00 4.34
581 628 4.503991 GGAAAGAAGAAAGGCAGAGACAGA 60.504 45.833 0.00 0.00 0.00 3.41
605 652 2.291741 GCAAGGACACAAAACAGAGAGG 59.708 50.000 0.00 0.00 0.00 3.69
732 781 3.452474 GGTGGAGATTGAGACGAGAATG 58.548 50.000 0.00 0.00 0.00 2.67
734 783 1.472878 CGGTGGAGATTGAGACGAGAA 59.527 52.381 0.00 0.00 0.00 2.87
758 807 1.029681 GGTGGATTTGTATTCCGGCC 58.970 55.000 0.00 0.00 35.94 6.13
822 884 4.211920 CCCAAAGAAACAACCTAGAACCA 58.788 43.478 0.00 0.00 0.00 3.67
847 914 2.880890 CCTGAACACAACAGAAGGGAAG 59.119 50.000 0.00 0.00 37.54 3.46
912 983 3.887716 AATGGCAGCTAGCAATTAAGAGG 59.112 43.478 18.83 0.00 45.14 3.69
976 1066 4.156008 CCCAATTGACCCTAAAGACGAAAG 59.844 45.833 7.12 0.00 0.00 2.62
980 1070 3.343941 TCCCAATTGACCCTAAAGACG 57.656 47.619 7.12 0.00 0.00 4.18
992 1082 2.609350 CGTCCAAAAGCATCCCAATTG 58.391 47.619 0.00 0.00 0.00 2.32
1262 1480 1.961133 TATTTTGGGACGGAGGGAGT 58.039 50.000 0.00 0.00 0.00 3.85
1263 1481 2.238898 ACTTATTTTGGGACGGAGGGAG 59.761 50.000 0.00 0.00 0.00 4.30
1264 1482 2.026636 CACTTATTTTGGGACGGAGGGA 60.027 50.000 0.00 0.00 0.00 4.20
1265 1483 2.290705 ACACTTATTTTGGGACGGAGGG 60.291 50.000 0.00 0.00 0.00 4.30
1266 1484 3.007635 GACACTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
1267 1485 3.939066 AGACACTTATTTTGGGACGGAG 58.061 45.455 0.00 0.00 0.00 4.63
1268 1486 4.360951 AAGACACTTATTTTGGGACGGA 57.639 40.909 0.00 0.00 0.00 4.69
1269 1487 5.243207 ACTAAGACACTTATTTTGGGACGG 58.757 41.667 0.00 0.00 0.00 4.79
1270 1488 6.869913 TGTACTAAGACACTTATTTTGGGACG 59.130 38.462 0.00 0.00 0.00 4.79
1271 1489 8.611654 TTGTACTAAGACACTTATTTTGGGAC 57.388 34.615 0.00 0.00 0.00 4.46
1272 1490 9.280174 CTTTGTACTAAGACACTTATTTTGGGA 57.720 33.333 11.09 0.00 0.00 4.37
1273 1491 9.280174 TCTTTGTACTAAGACACTTATTTTGGG 57.720 33.333 14.62 0.00 0.00 4.12
1286 1504 9.280174 CCCAAAATAAGTGTCTTTGTACTAAGA 57.720 33.333 14.62 14.62 0.00 2.10
1287 1505 9.280174 TCCCAAAATAAGTGTCTTTGTACTAAG 57.720 33.333 10.39 10.39 0.00 2.18
1288 1506 9.059260 GTCCCAAAATAAGTGTCTTTGTACTAA 57.941 33.333 0.00 0.00 0.00 2.24
1289 1507 7.385752 CGTCCCAAAATAAGTGTCTTTGTACTA 59.614 37.037 0.00 0.00 0.00 1.82
1290 1508 6.204108 CGTCCCAAAATAAGTGTCTTTGTACT 59.796 38.462 0.00 0.00 0.00 2.73
1291 1509 6.368213 CGTCCCAAAATAAGTGTCTTTGTAC 58.632 40.000 0.00 0.00 0.00 2.90
1292 1510 5.470777 CCGTCCCAAAATAAGTGTCTTTGTA 59.529 40.000 0.00 0.00 0.00 2.41
1293 1511 4.277423 CCGTCCCAAAATAAGTGTCTTTGT 59.723 41.667 0.00 0.00 0.00 2.83
1294 1512 4.517453 TCCGTCCCAAAATAAGTGTCTTTG 59.483 41.667 0.00 0.00 0.00 2.77
1295 1513 4.721132 TCCGTCCCAAAATAAGTGTCTTT 58.279 39.130 0.00 0.00 0.00 2.52
1296 1514 4.324267 CTCCGTCCCAAAATAAGTGTCTT 58.676 43.478 0.00 0.00 0.00 3.01
1297 1515 3.307480 CCTCCGTCCCAAAATAAGTGTCT 60.307 47.826 0.00 0.00 0.00 3.41
1298 1516 3.007635 CCTCCGTCCCAAAATAAGTGTC 58.992 50.000 0.00 0.00 0.00 3.67
1299 1517 2.290705 CCCTCCGTCCCAAAATAAGTGT 60.291 50.000 0.00 0.00 0.00 3.55
1300 1518 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
1301 1519 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
1302 1520 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
1303 1521 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
1304 1522 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
1305 1523 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
1306 1524 1.961133 ATACTCCCTCCGTCCCAAAA 58.039 50.000 0.00 0.00 0.00 2.44
1307 1525 2.852714 TATACTCCCTCCGTCCCAAA 57.147 50.000 0.00 0.00 0.00 3.28
1308 1526 2.023695 ACTTATACTCCCTCCGTCCCAA 60.024 50.000 0.00 0.00 0.00 4.12
1309 1527 1.572415 ACTTATACTCCCTCCGTCCCA 59.428 52.381 0.00 0.00 0.00 4.37
1310 1528 2.237643 GACTTATACTCCCTCCGTCCC 58.762 57.143 0.00 0.00 0.00 4.46
1311 1529 2.941480 TGACTTATACTCCCTCCGTCC 58.059 52.381 0.00 0.00 0.00 4.79
1312 1530 4.216687 CAGATGACTTATACTCCCTCCGTC 59.783 50.000 0.00 0.00 0.00 4.79
1313 1531 4.141228 TCAGATGACTTATACTCCCTCCGT 60.141 45.833 0.00 0.00 0.00 4.69
1314 1532 4.399219 TCAGATGACTTATACTCCCTCCG 58.601 47.826 0.00 0.00 0.00 4.63
1315 1533 5.337169 GCATCAGATGACTTATACTCCCTCC 60.337 48.000 15.12 0.00 0.00 4.30
1316 1534 5.480073 AGCATCAGATGACTTATACTCCCTC 59.520 44.000 15.12 0.00 0.00 4.30
1317 1535 5.245751 CAGCATCAGATGACTTATACTCCCT 59.754 44.000 15.12 0.00 31.30 4.20
1318 1536 5.011533 ACAGCATCAGATGACTTATACTCCC 59.988 44.000 15.12 0.00 34.60 4.30
1319 1537 6.095432 ACAGCATCAGATGACTTATACTCC 57.905 41.667 15.12 0.00 34.60 3.85
1320 1538 6.644592 GGAACAGCATCAGATGACTTATACTC 59.355 42.308 15.12 0.00 34.60 2.59
1321 1539 6.098838 TGGAACAGCATCAGATGACTTATACT 59.901 38.462 15.12 0.00 34.60 2.12
1322 1540 6.283694 TGGAACAGCATCAGATGACTTATAC 58.716 40.000 15.12 3.92 34.60 1.47
1323 1541 6.484364 TGGAACAGCATCAGATGACTTATA 57.516 37.500 15.12 0.00 34.60 0.98
1324 1542 5.363562 TGGAACAGCATCAGATGACTTAT 57.636 39.130 15.12 2.47 34.60 1.73
1325 1543 4.824479 TGGAACAGCATCAGATGACTTA 57.176 40.909 15.12 0.00 34.60 2.24
1326 1544 3.708403 TGGAACAGCATCAGATGACTT 57.292 42.857 15.12 1.22 34.60 3.01
1368 1604 8.861086 AGCAATGCACTATATAGTAGTACAGTT 58.139 33.333 15.03 0.58 34.13 3.16
1390 1652 8.055279 AGCATTTAAGCAAGAGTAATTAGCAA 57.945 30.769 0.00 0.00 36.85 3.91
1392 1654 8.401709 AGAAGCATTTAAGCAAGAGTAATTAGC 58.598 33.333 0.00 0.00 36.85 3.09
1393 1655 9.713740 CAGAAGCATTTAAGCAAGAGTAATTAG 57.286 33.333 0.00 0.00 36.85 1.73
1498 1780 6.541086 CACTGCAAGAGTGTTAAATCATCTC 58.459 40.000 0.00 0.00 46.30 2.75
1520 1802 7.507672 AACTAACTTATATATCGCATCGCAC 57.492 36.000 0.00 0.00 0.00 5.34
1606 2022 7.618502 TGTTACTGTTAAAGAGACAGCAAAA 57.381 32.000 4.30 0.00 46.53 2.44
1607 2023 7.414762 GGTTGTTACTGTTAAAGAGACAGCAAA 60.415 37.037 4.30 0.00 46.53 3.68
1808 2224 8.079809 CGACTGAATAACAAAGTACCCAAAAAT 58.920 33.333 0.00 0.00 0.00 1.82
1838 2255 0.683412 TGACTGACAGCAGCATGAGT 59.317 50.000 1.25 0.00 46.26 3.41
1850 2267 4.496341 CCACATTTTGACACAGTGACTGAC 60.496 45.833 20.97 10.44 35.18 3.51
1864 2301 8.685427 TGGTATCTCATTAACATCCACATTTTG 58.315 33.333 0.00 0.00 0.00 2.44
1870 2311 8.345565 GTTGAATGGTATCTCATTAACATCCAC 58.654 37.037 0.00 0.00 37.47 4.02
2146 2598 0.604780 CCCTGTTGCTCTGGTCACAG 60.605 60.000 0.00 0.00 46.30 3.66
2209 2661 4.047059 TCGTCGTTGTCCTCGCCC 62.047 66.667 0.00 0.00 0.00 6.13
2398 2875 2.213499 ACAACAGCAAGAGAAAGGACG 58.787 47.619 0.00 0.00 0.00 4.79
2522 3002 2.208431 GCGATGATGGAAGACTGGAAG 58.792 52.381 0.00 0.00 42.29 3.46
2523 3003 1.134401 GGCGATGATGGAAGACTGGAA 60.134 52.381 0.00 0.00 0.00 3.53
2524 3004 0.465705 GGCGATGATGGAAGACTGGA 59.534 55.000 0.00 0.00 0.00 3.86
2525 3005 0.467384 AGGCGATGATGGAAGACTGG 59.533 55.000 0.00 0.00 0.00 4.00
2526 3006 2.322355 AAGGCGATGATGGAAGACTG 57.678 50.000 0.00 0.00 0.00 3.51
2527 3007 3.432326 GGTAAAGGCGATGATGGAAGACT 60.432 47.826 0.00 0.00 0.00 3.24
2528 3008 2.872858 GGTAAAGGCGATGATGGAAGAC 59.127 50.000 0.00 0.00 0.00 3.01
2529 3009 2.771943 AGGTAAAGGCGATGATGGAAGA 59.228 45.455 0.00 0.00 0.00 2.87
2706 3218 7.291651 CCAAATACAGTAAGGGGATAAGGACTA 59.708 40.741 0.00 0.00 0.00 2.59
2785 4197 5.781210 TTTGCACAAACATCAGGAACATA 57.219 34.783 0.00 0.00 0.00 2.29
2850 4262 8.422973 TTGTCAAGAAAAATGAAGAAATGTGG 57.577 30.769 0.00 0.00 0.00 4.17
2892 4304 6.337356 TGAATGTTTCTTTGTTTTCAGACCC 58.663 36.000 0.00 0.00 0.00 4.46
2933 4355 1.961394 CCGGTTGAGATATCCCGAAGA 59.039 52.381 16.80 0.00 43.01 2.87
2935 4357 1.784358 ACCGGTTGAGATATCCCGAA 58.216 50.000 16.80 0.00 43.01 4.30
2936 4358 1.784358 AACCGGTTGAGATATCCCGA 58.216 50.000 21.56 0.00 43.01 5.14
2937 4359 2.210116 CAAACCGGTTGAGATATCCCG 58.790 52.381 23.08 10.24 39.87 5.14
2939 4361 3.553828 TCCAAACCGGTTGAGATATCC 57.446 47.619 23.08 0.00 39.87 2.59
2940 4362 3.815401 CCATCCAAACCGGTTGAGATATC 59.185 47.826 23.08 0.00 39.87 1.63
2941 4363 3.820557 CCATCCAAACCGGTTGAGATAT 58.179 45.455 23.08 10.63 39.87 1.63
2942 4364 2.682563 GCCATCCAAACCGGTTGAGATA 60.683 50.000 23.08 8.81 39.87 1.98
2943 4365 1.955208 GCCATCCAAACCGGTTGAGAT 60.955 52.381 23.08 21.84 39.87 2.75
2944 4366 0.608035 GCCATCCAAACCGGTTGAGA 60.608 55.000 23.08 20.53 39.87 3.27
2945 4367 1.883021 GCCATCCAAACCGGTTGAG 59.117 57.895 23.08 16.55 39.87 3.02
2946 4368 1.969064 CGCCATCCAAACCGGTTGA 60.969 57.895 23.08 15.50 39.87 3.18
2947 4369 2.566010 CGCCATCCAAACCGGTTG 59.434 61.111 23.08 14.70 36.94 3.77
2948 4370 2.675075 CCGCCATCCAAACCGGTT 60.675 61.111 15.86 15.86 36.18 4.44
2950 4372 3.131478 GACCGCCATCCAAACCGG 61.131 66.667 0.00 0.00 45.80 5.28
2951 4373 1.748879 ATGACCGCCATCCAAACCG 60.749 57.895 0.00 0.00 0.00 4.44
2952 4374 0.965363 ACATGACCGCCATCCAAACC 60.965 55.000 0.00 0.00 31.94 3.27
2953 4375 1.745232 TACATGACCGCCATCCAAAC 58.255 50.000 0.00 0.00 31.94 2.93
2954 4376 2.498644 TTACATGACCGCCATCCAAA 57.501 45.000 0.00 0.00 31.94 3.28
2955 4377 2.296792 CATTACATGACCGCCATCCAA 58.703 47.619 0.00 0.00 31.94 3.53
2956 4378 1.476652 CCATTACATGACCGCCATCCA 60.477 52.381 0.00 0.00 31.94 3.41
2957 4379 1.202758 TCCATTACATGACCGCCATCC 60.203 52.381 0.00 0.00 31.94 3.51
2958 4380 2.254546 TCCATTACATGACCGCCATC 57.745 50.000 0.00 0.00 31.94 3.51
2960 4382 2.038426 CCTATCCATTACATGACCGCCA 59.962 50.000 0.00 0.00 0.00 5.69
2961 4383 2.699954 CCTATCCATTACATGACCGCC 58.300 52.381 0.00 0.00 0.00 6.13
2962 4384 2.076863 GCCTATCCATTACATGACCGC 58.923 52.381 0.00 0.00 0.00 5.68
2964 4386 6.942576 ACTAATTGCCTATCCATTACATGACC 59.057 38.462 0.00 0.00 0.00 4.02
2966 4388 8.995027 AAACTAATTGCCTATCCATTACATGA 57.005 30.769 0.00 0.00 0.00 3.07
2968 4390 9.297037 GGTAAACTAATTGCCTATCCATTACAT 57.703 33.333 0.00 0.00 40.38 2.29
2969 4391 8.685838 GGTAAACTAATTGCCTATCCATTACA 57.314 34.615 0.00 0.00 40.38 2.41
2986 4408 8.804204 GCTGGCTAAAGATAGATAGGTAAACTA 58.196 37.037 0.00 0.00 35.80 2.24
2987 4409 7.256368 GGCTGGCTAAAGATAGATAGGTAAACT 60.256 40.741 0.00 0.00 0.00 2.66
2988 4410 6.874664 GGCTGGCTAAAGATAGATAGGTAAAC 59.125 42.308 0.00 0.00 0.00 2.01
2990 4412 5.185249 CGGCTGGCTAAAGATAGATAGGTAA 59.815 44.000 0.00 0.00 0.00 2.85
2991 4413 4.705507 CGGCTGGCTAAAGATAGATAGGTA 59.294 45.833 0.00 0.00 0.00 3.08
2992 4414 3.511934 CGGCTGGCTAAAGATAGATAGGT 59.488 47.826 0.00 0.00 0.00 3.08
2994 4416 3.511934 ACCGGCTGGCTAAAGATAGATAG 59.488 47.826 12.89 0.00 39.70 2.08
2995 4417 3.507411 ACCGGCTGGCTAAAGATAGATA 58.493 45.455 12.89 0.00 39.70 1.98
2996 4418 2.330216 ACCGGCTGGCTAAAGATAGAT 58.670 47.619 12.89 0.00 39.70 1.98
2997 4419 1.789523 ACCGGCTGGCTAAAGATAGA 58.210 50.000 12.89 0.00 39.70 1.98
2998 4420 2.213499 CAACCGGCTGGCTAAAGATAG 58.787 52.381 12.89 0.00 39.70 2.08
2999 4421 1.557832 ACAACCGGCTGGCTAAAGATA 59.442 47.619 12.89 0.00 39.70 1.98
3001 4423 0.605319 CACAACCGGCTGGCTAAAGA 60.605 55.000 12.89 0.00 39.70 2.52
3003 4425 1.602323 CCACAACCGGCTGGCTAAA 60.602 57.895 12.89 0.00 39.70 1.85
3004 4426 2.033448 CCACAACCGGCTGGCTAA 59.967 61.111 12.89 0.00 39.70 3.09
3005 4427 2.925706 TCCACAACCGGCTGGCTA 60.926 61.111 12.89 0.00 39.70 3.93
3007 4429 4.643387 ACTCCACAACCGGCTGGC 62.643 66.667 12.89 0.00 39.70 4.85
3008 4430 2.358737 GACTCCACAACCGGCTGG 60.359 66.667 11.02 11.02 42.84 4.85
3009 4431 0.320374 TAAGACTCCACAACCGGCTG 59.680 55.000 0.00 0.62 0.00 4.85
3011 4433 1.207329 AGATAAGACTCCACAACCGGC 59.793 52.381 0.00 0.00 0.00 6.13
3012 4434 3.262420 CAAGATAAGACTCCACAACCGG 58.738 50.000 0.00 0.00 0.00 5.28
3013 4435 3.262420 CCAAGATAAGACTCCACAACCG 58.738 50.000 0.00 0.00 0.00 4.44
3014 4436 3.010420 GCCAAGATAAGACTCCACAACC 58.990 50.000 0.00 0.00 0.00 3.77
3015 4437 3.944087 AGCCAAGATAAGACTCCACAAC 58.056 45.455 0.00 0.00 0.00 3.32
3016 4438 4.777896 ACTAGCCAAGATAAGACTCCACAA 59.222 41.667 0.00 0.00 0.00 3.33
3018 4440 4.647399 AGACTAGCCAAGATAAGACTCCAC 59.353 45.833 0.00 0.00 0.00 4.02
3019 4441 4.646945 CAGACTAGCCAAGATAAGACTCCA 59.353 45.833 0.00 0.00 0.00 3.86
3021 4443 5.126384 ACACAGACTAGCCAAGATAAGACTC 59.874 44.000 0.00 0.00 0.00 3.36
3022 4444 5.020132 ACACAGACTAGCCAAGATAAGACT 58.980 41.667 0.00 0.00 0.00 3.24
3023 4445 5.105752 CACACAGACTAGCCAAGATAAGAC 58.894 45.833 0.00 0.00 0.00 3.01
3024 4446 4.772624 ACACACAGACTAGCCAAGATAAGA 59.227 41.667 0.00 0.00 0.00 2.10
3025 4447 5.078411 ACACACAGACTAGCCAAGATAAG 57.922 43.478 0.00 0.00 0.00 1.73
3026 4448 4.081642 GGACACACAGACTAGCCAAGATAA 60.082 45.833 0.00 0.00 0.00 1.75
3027 4449 3.447586 GGACACACAGACTAGCCAAGATA 59.552 47.826 0.00 0.00 0.00 1.98
3028 4450 2.234908 GGACACACAGACTAGCCAAGAT 59.765 50.000 0.00 0.00 0.00 2.40
3029 4451 1.618837 GGACACACAGACTAGCCAAGA 59.381 52.381 0.00 0.00 0.00 3.02
3031 4453 1.344438 CTGGACACACAGACTAGCCAA 59.656 52.381 0.00 0.00 40.97 4.52
3032 4454 0.969149 CTGGACACACAGACTAGCCA 59.031 55.000 0.00 0.00 40.97 4.75
3033 4455 0.390472 GCTGGACACACAGACTAGCC 60.390 60.000 0.00 0.00 39.75 3.93
3034 4456 0.390472 GGCTGGACACACAGACTAGC 60.390 60.000 0.00 0.00 43.32 3.42
3035 4457 3.822607 GGCTGGACACACAGACTAG 57.177 57.895 0.00 0.00 43.32 2.57
3039 4461 1.131638 AAAGAGGCTGGACACACAGA 58.868 50.000 0.00 0.00 40.97 3.41
3041 4463 1.270839 GCTAAAGAGGCTGGACACACA 60.271 52.381 0.00 0.00 0.00 3.72
3042 4464 1.002544 AGCTAAAGAGGCTGGACACAC 59.997 52.381 0.00 0.00 38.73 3.82
3043 4465 1.276421 GAGCTAAAGAGGCTGGACACA 59.724 52.381 0.00 0.00 40.40 3.72
3044 4466 1.552792 AGAGCTAAAGAGGCTGGACAC 59.447 52.381 0.00 0.00 40.40 3.67
3045 4467 1.944177 AGAGCTAAAGAGGCTGGACA 58.056 50.000 0.00 0.00 40.40 4.02
3046 4468 3.386402 ACATAGAGCTAAAGAGGCTGGAC 59.614 47.826 0.00 0.00 40.40 4.02
3047 4469 3.386078 CACATAGAGCTAAAGAGGCTGGA 59.614 47.826 0.00 0.00 40.40 3.86
3048 4470 3.386078 TCACATAGAGCTAAAGAGGCTGG 59.614 47.826 0.00 0.00 40.40 4.85
3049 4471 4.619973 CTCACATAGAGCTAAAGAGGCTG 58.380 47.826 0.00 0.00 40.40 4.85
3050 4472 4.935352 CTCACATAGAGCTAAAGAGGCT 57.065 45.455 0.00 0.00 43.26 4.58
3062 4484 9.944376 AAGTAATAAAAAGACAGCTCACATAGA 57.056 29.630 0.00 0.00 0.00 1.98
3065 4487 9.899226 GAAAAGTAATAAAAAGACAGCTCACAT 57.101 29.630 0.00 0.00 0.00 3.21
3066 4488 8.898761 TGAAAAGTAATAAAAAGACAGCTCACA 58.101 29.630 0.00 0.00 0.00 3.58
3067 4489 9.387123 CTGAAAAGTAATAAAAAGACAGCTCAC 57.613 33.333 0.00 0.00 0.00 3.51
3069 4491 9.600646 GACTGAAAAGTAATAAAAAGACAGCTC 57.399 33.333 0.00 0.00 0.00 4.09
3070 4492 8.283291 CGACTGAAAAGTAATAAAAAGACAGCT 58.717 33.333 0.00 0.00 0.00 4.24
3071 4493 7.534239 CCGACTGAAAAGTAATAAAAAGACAGC 59.466 37.037 0.00 0.00 0.00 4.40
3072 4494 8.770828 TCCGACTGAAAAGTAATAAAAAGACAG 58.229 33.333 0.00 0.00 0.00 3.51
3073 4495 8.665643 TCCGACTGAAAAGTAATAAAAAGACA 57.334 30.769 0.00 0.00 0.00 3.41
3075 4497 8.985805 GTCTCCGACTGAAAAGTAATAAAAAGA 58.014 33.333 0.00 0.00 0.00 2.52
3076 4498 8.989980 AGTCTCCGACTGAAAAGTAATAAAAAG 58.010 33.333 0.00 0.00 41.76 2.27
3077 4499 8.897872 AGTCTCCGACTGAAAAGTAATAAAAA 57.102 30.769 0.00 0.00 41.76 1.94
3078 4500 8.897872 AAGTCTCCGACTGAAAAGTAATAAAA 57.102 30.769 0.00 0.00 42.59 1.52
3079 4501 8.770828 CAAAGTCTCCGACTGAAAAGTAATAAA 58.229 33.333 0.00 0.00 42.59 1.40
3080 4502 7.386848 CCAAAGTCTCCGACTGAAAAGTAATAA 59.613 37.037 0.00 0.00 42.59 1.40
3081 4503 6.872020 CCAAAGTCTCCGACTGAAAAGTAATA 59.128 38.462 0.00 0.00 42.59 0.98
3083 4505 5.054477 CCAAAGTCTCCGACTGAAAAGTAA 58.946 41.667 0.00 0.00 42.59 2.24
3086 4508 3.728845 TCCAAAGTCTCCGACTGAAAAG 58.271 45.455 0.00 0.00 42.59 2.27
3087 4509 3.830744 TCCAAAGTCTCCGACTGAAAA 57.169 42.857 0.00 0.00 42.59 2.29
3088 4510 3.463944 GTTCCAAAGTCTCCGACTGAAA 58.536 45.455 0.00 0.00 42.59 2.69
3089 4511 2.224209 GGTTCCAAAGTCTCCGACTGAA 60.224 50.000 0.00 0.00 42.59 3.02
3090 4512 1.343465 GGTTCCAAAGTCTCCGACTGA 59.657 52.381 0.00 0.00 42.59 3.41
3091 4513 1.344763 AGGTTCCAAAGTCTCCGACTG 59.655 52.381 0.00 0.00 42.59 3.51
3092 4514 1.718280 AGGTTCCAAAGTCTCCGACT 58.282 50.000 0.00 0.00 45.64 4.18
3094 4516 1.766496 ACAAGGTTCCAAAGTCTCCGA 59.234 47.619 0.00 0.00 0.00 4.55
3095 4517 2.256117 ACAAGGTTCCAAAGTCTCCG 57.744 50.000 0.00 0.00 0.00 4.63
3098 4520 3.662759 TCCAACAAGGTTCCAAAGTCT 57.337 42.857 0.00 0.00 39.02 3.24
3100 4522 2.764010 GGTTCCAACAAGGTTCCAAAGT 59.236 45.455 0.00 0.00 39.02 2.66
3101 4523 3.031013 AGGTTCCAACAAGGTTCCAAAG 58.969 45.455 0.00 0.00 39.02 2.77
3104 4526 2.838637 AAGGTTCCAACAAGGTTCCA 57.161 45.000 0.00 0.00 39.02 3.53
3106 4528 6.419710 CGAAATAAAAGGTTCCAACAAGGTTC 59.580 38.462 0.00 0.00 39.02 3.62
3107 4529 6.277605 CGAAATAAAAGGTTCCAACAAGGTT 58.722 36.000 0.00 0.00 39.02 3.50
3110 4532 5.528870 AGCGAAATAAAAGGTTCCAACAAG 58.471 37.500 0.00 0.00 0.00 3.16
3111 4533 5.523438 AGCGAAATAAAAGGTTCCAACAA 57.477 34.783 0.00 0.00 0.00 2.83
3112 4534 6.636562 TTAGCGAAATAAAAGGTTCCAACA 57.363 33.333 0.00 0.00 0.00 3.33
3113 4535 9.285770 CTTATTAGCGAAATAAAAGGTTCCAAC 57.714 33.333 8.15 0.00 39.10 3.77
3114 4536 9.233649 TCTTATTAGCGAAATAAAAGGTTCCAA 57.766 29.630 8.15 0.00 39.10 3.53
3116 4538 9.665264 CATCTTATTAGCGAAATAAAAGGTTCC 57.335 33.333 8.15 0.00 39.10 3.62
3117 4539 9.665264 CCATCTTATTAGCGAAATAAAAGGTTC 57.335 33.333 8.15 0.00 39.10 3.62
3119 4541 7.255486 GGCCATCTTATTAGCGAAATAAAAGGT 60.255 37.037 0.00 0.00 39.10 3.50
3120 4542 7.084486 GGCCATCTTATTAGCGAAATAAAAGG 58.916 38.462 0.00 9.93 39.10 3.11
3122 4544 6.261381 ACGGCCATCTTATTAGCGAAATAAAA 59.739 34.615 2.24 0.00 39.10 1.52
3123 4545 5.761234 ACGGCCATCTTATTAGCGAAATAAA 59.239 36.000 2.24 2.44 39.10 1.40
3124 4546 5.302360 ACGGCCATCTTATTAGCGAAATAA 58.698 37.500 2.24 6.98 37.64 1.40
3125 4547 4.890088 ACGGCCATCTTATTAGCGAAATA 58.110 39.130 2.24 0.00 0.00 1.40
3126 4548 3.740115 ACGGCCATCTTATTAGCGAAAT 58.260 40.909 2.24 0.00 0.00 2.17
3128 4550 2.902705 ACGGCCATCTTATTAGCGAA 57.097 45.000 2.24 0.00 0.00 4.70
3129 4551 3.845178 CATACGGCCATCTTATTAGCGA 58.155 45.455 2.24 0.00 0.00 4.93
3130 4552 2.348666 GCATACGGCCATCTTATTAGCG 59.651 50.000 2.24 0.00 36.11 4.26
3131 4553 3.334691 TGCATACGGCCATCTTATTAGC 58.665 45.455 2.24 0.00 43.89 3.09
3132 4554 5.178061 TGATGCATACGGCCATCTTATTAG 58.822 41.667 2.24 0.00 43.89 1.73
3133 4555 5.159273 TGATGCATACGGCCATCTTATTA 57.841 39.130 2.24 0.00 43.89 0.98
3134 4556 4.019792 TGATGCATACGGCCATCTTATT 57.980 40.909 2.24 0.00 43.89 1.40
3135 4557 3.701205 TGATGCATACGGCCATCTTAT 57.299 42.857 2.24 0.00 43.89 1.73
3136 4558 3.701205 ATGATGCATACGGCCATCTTA 57.299 42.857 2.24 0.00 43.89 2.10
3137 4559 2.574006 ATGATGCATACGGCCATCTT 57.426 45.000 2.24 0.00 43.89 2.40
3138 4560 2.039480 AGAATGATGCATACGGCCATCT 59.961 45.455 2.24 0.00 43.89 2.90
3139 4561 2.161012 CAGAATGATGCATACGGCCATC 59.839 50.000 2.24 0.00 39.87 3.51
3140 4562 2.156917 CAGAATGATGCATACGGCCAT 58.843 47.619 2.24 0.00 39.87 4.40
3141 4563 1.140652 TCAGAATGATGCATACGGCCA 59.859 47.619 2.24 0.00 42.56 5.36
3142 4564 1.882912 TCAGAATGATGCATACGGCC 58.117 50.000 0.00 0.00 42.56 6.13
3154 4576 1.164662 CCGGCCTCTGCATCAGAATG 61.165 60.000 0.00 0.00 40.18 2.67
3155 4577 1.147824 CCGGCCTCTGCATCAGAAT 59.852 57.895 0.00 0.00 40.18 2.40
3156 4578 2.586245 CCGGCCTCTGCATCAGAA 59.414 61.111 0.00 0.00 40.18 3.02
3157 4579 3.473647 CCCGGCCTCTGCATCAGA 61.474 66.667 0.00 0.00 38.25 3.27
3158 4580 2.937379 CTTCCCGGCCTCTGCATCAG 62.937 65.000 0.00 0.00 40.13 2.90
3159 4581 3.008517 TTCCCGGCCTCTGCATCA 61.009 61.111 0.00 0.00 40.13 3.07
3160 4582 2.049627 ATCTTCCCGGCCTCTGCATC 62.050 60.000 0.00 0.00 40.13 3.91
3161 4583 2.049627 GATCTTCCCGGCCTCTGCAT 62.050 60.000 0.00 0.00 40.13 3.96
3162 4584 2.688666 ATCTTCCCGGCCTCTGCA 60.689 61.111 0.00 0.00 40.13 4.41
3163 4585 2.110006 GATCTTCCCGGCCTCTGC 59.890 66.667 0.00 0.00 0.00 4.26
3164 4586 2.825264 GGATCTTCCCGGCCTCTG 59.175 66.667 0.00 0.00 0.00 3.35
3254 4679 4.494091 AGTCTACATGGTTGAGGGAATG 57.506 45.455 0.00 0.00 0.00 2.67
3261 4698 4.157246 ACCACTGTAGTCTACATGGTTGA 58.843 43.478 25.76 3.62 42.49 3.18
3277 4714 7.041303 TGCGTAGTTAGATCTAATCTACCACTG 60.041 40.741 27.53 21.01 41.33 3.66
3333 4770 7.667043 TTACTCTGCATTAAACCTGTACAAG 57.333 36.000 0.00 0.00 0.00 3.16
3384 4821 5.943416 AGCAGTGCATACCAAAATACTACAA 59.057 36.000 19.20 0.00 0.00 2.41
3529 5631 3.126831 GTGTGTCAGTGTCTTCCTTCTG 58.873 50.000 0.00 0.00 0.00 3.02
3615 5848 1.936547 GGTGTACTACTACCTCCGTCG 59.063 57.143 0.00 0.00 34.11 5.12
3772 6006 4.398044 GGTTTGGTATGGAGTTGGTACATG 59.602 45.833 0.00 0.00 39.30 3.21
3781 6015 2.290960 GCTTCCTGGTTTGGTATGGAGT 60.291 50.000 0.00 0.00 0.00 3.85
4016 7895 2.091665 AGGGGCAAAGGGTTGATGATAG 60.092 50.000 0.00 0.00 36.83 2.08
4159 8053 4.817063 CGCCGGCGCAATGACTTG 62.817 66.667 38.48 5.99 35.36 3.16
4232 8126 2.034879 CGATGCGGTCAAGCCTTGT 61.035 57.895 4.04 0.00 36.02 3.16
4292 8186 1.541588 GAGCACAGGTCATTGGTTTCC 59.458 52.381 0.00 0.00 0.00 3.13
4317 8211 2.677228 CAGAGCACCCCCGGAAAT 59.323 61.111 0.73 0.00 0.00 2.17
4430 8324 5.851693 AGTTGGTATTCCTATGGATGGATGA 59.148 40.000 0.00 0.00 33.09 2.92
4497 8391 6.998074 TGAGATATACAAGAATCCCGCAAATT 59.002 34.615 0.00 0.00 0.00 1.82
4547 8441 5.297527 CGGTAACTTGTTAACAGAAAACCCT 59.702 40.000 18.74 2.39 0.00 4.34
4560 8454 2.292292 GGATGTGCAACGGTAACTTGTT 59.708 45.455 0.00 0.00 42.39 2.83
4600 8494 5.522456 CAAAGCTAGCATCAAGTTTTGTCA 58.478 37.500 18.83 0.00 39.15 3.58
4663 8557 6.601613 ACAAACACTAACAGACATTCTTTCCA 59.398 34.615 0.00 0.00 0.00 3.53
4674 8568 5.362717 TCTCAGAAGGACAAACACTAACAGA 59.637 40.000 0.00 0.00 0.00 3.41
4750 8647 1.209504 CACGAGGAAGGGGCAGAATTA 59.790 52.381 0.00 0.00 0.00 1.40
4768 8665 7.908601 GGTATTTTGAATGTCTTTCGGTATCAC 59.091 37.037 0.00 0.00 37.13 3.06
5008 8920 8.025445 GTGAAATTTTAAGCATGACTGATGTCT 58.975 33.333 0.00 0.00 43.29 3.41
5041 8973 9.226606 ACGATTTTAAAGGAAATATGACTGTCA 57.773 29.630 13.60 13.60 29.75 3.58
5134 9080 2.268802 ACTTCGTCGCTCTCCTGCA 61.269 57.895 0.00 0.00 0.00 4.41
5168 9114 0.249741 AAAGTTCACACCCGAGGTCG 60.250 55.000 0.00 0.00 31.02 4.79
5217 9163 8.741841 GTGGACTAGCCTAAATATTACTAGGAG 58.258 40.741 14.87 8.22 37.47 3.69
5372 9322 0.178967 TTGCTTCCACTGCCCATTCA 60.179 50.000 0.00 0.00 0.00 2.57
5382 9332 7.801716 TTAGACACCATATATTTGCTTCCAC 57.198 36.000 0.00 0.00 0.00 4.02
5400 9350 5.997129 TGTTTTCAGAGCATGTGATTAGACA 59.003 36.000 0.00 0.00 38.60 3.41
5444 9587 8.634475 ATTTTCAGAGTTTGTGTTTTTAGAGC 57.366 30.769 0.00 0.00 0.00 4.09
5528 9671 8.336235 TCAGGTCAGGTTTATTTCCAGAATTAT 58.664 33.333 0.00 0.00 0.00 1.28
5640 9784 2.876550 GTCACTGAAAACCCACCTACAC 59.123 50.000 0.00 0.00 0.00 2.90
5731 9875 1.445582 CTCTTCGTTCCCCGTTCCG 60.446 63.158 0.00 0.00 37.94 4.30
5746 9890 6.603997 AGTTAATAACTGATCACCGAGACTCT 59.396 38.462 4.66 0.00 41.01 3.24
5749 9893 6.255887 CCAAGTTAATAACTGATCACCGAGAC 59.744 42.308 6.41 0.00 41.91 3.36
5750 9894 6.070995 ACCAAGTTAATAACTGATCACCGAGA 60.071 38.462 6.41 0.00 41.91 4.04
5751 9895 6.106673 ACCAAGTTAATAACTGATCACCGAG 58.893 40.000 6.41 0.00 41.91 4.63
5752 9896 6.045072 ACCAAGTTAATAACTGATCACCGA 57.955 37.500 6.41 0.00 41.91 4.69
5753 9897 6.542852 CAACCAAGTTAATAACTGATCACCG 58.457 40.000 6.41 0.00 41.91 4.94
5755 9899 6.908825 TGCAACCAAGTTAATAACTGATCAC 58.091 36.000 6.41 0.00 41.91 3.06
5756 9900 6.939730 TCTGCAACCAAGTTAATAACTGATCA 59.060 34.615 6.41 0.00 41.91 2.92
5819 9970 0.036010 ATCTTCACCTGACCAAGCCG 60.036 55.000 0.00 0.00 0.00 5.52
6007 10158 5.755375 TCCTGAAGATGATTTAATCTGACGC 59.245 40.000 6.50 0.00 36.99 5.19
6035 10186 1.150081 CACATCAGCCCCATCCTCC 59.850 63.158 0.00 0.00 0.00 4.30
6061 10213 1.985473 ACATTTCTCCAGCAACAGCA 58.015 45.000 0.00 0.00 0.00 4.41
6063 10215 3.438087 CAGGTACATTTCTCCAGCAACAG 59.562 47.826 0.00 0.00 0.00 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.