Multiple sequence alignment - TraesCS7D01G148100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G148100 chr7D 100.000 9232 0 0 1 9232 95052348 95061579 0.000000e+00 17049
1 TraesCS7D01G148100 chr7D 83.692 791 115 11 6418 7204 95149010 95148230 0.000000e+00 734
2 TraesCS7D01G148100 chr7D 83.689 797 102 20 6432 7225 96082857 96082086 0.000000e+00 726
3 TraesCS7D01G148100 chr7D 78.305 1074 169 36 5354 6405 96033162 96032131 1.310000e-177 634
4 TraesCS7D01G148100 chr7D 76.794 1310 181 76 2376 3609 96052431 96051169 1.020000e-173 621
5 TraesCS7D01G148100 chr7D 80.470 809 122 25 6427 7225 96031882 96031100 3.710000e-163 586
6 TraesCS7D01G148100 chr7D 87.018 493 46 8 8719 9211 94939984 94939510 2.930000e-149 540
7 TraesCS7D01G148100 chr7D 77.740 894 133 40 2447 3309 95152292 95151434 1.080000e-133 488
8 TraesCS7D01G148100 chr7D 84.861 502 52 7 8719 9211 94797799 94797313 1.390000e-132 484
9 TraesCS7D01G148100 chr7D 97.482 278 7 0 3767 4044 567664910 567665187 8.390000e-130 475
10 TraesCS7D01G148100 chr7D 76.738 705 135 21 4815 5515 95150872 95150193 5.270000e-97 366
11 TraesCS7D01G148100 chr7D 77.850 307 39 14 3327 3621 95151464 95151175 7.420000e-36 163
12 TraesCS7D01G148100 chr7D 77.966 177 38 1 7390 7565 95963581 95963405 9.800000e-20 110
13 TraesCS7D01G148100 chr7D 77.059 170 39 0 7396 7565 95969653 95969484 2.120000e-16 99
14 TraesCS7D01G148100 chr7B 90.929 2778 169 50 1 2712 49177090 49179850 0.000000e+00 3657
15 TraesCS7D01G148100 chr7B 93.878 1960 96 13 7284 9232 49184178 49186124 0.000000e+00 2933
16 TraesCS7D01G148100 chr7B 92.586 1686 98 20 4724 6402 49181537 49183202 0.000000e+00 2396
17 TraesCS7D01G148100 chr7B 94.243 1077 56 4 2697 3770 49179862 49180935 0.000000e+00 1640
18 TraesCS7D01G148100 chr7B 95.005 941 41 4 6418 7358 49183258 49184192 0.000000e+00 1472
19 TraesCS7D01G148100 chr7B 85.165 728 87 14 5654 6368 49360485 49361204 0.000000e+00 726
20 TraesCS7D01G148100 chr7B 82.663 796 119 17 6428 7217 49361484 49362266 0.000000e+00 688
21 TraesCS7D01G148100 chr7B 86.883 648 40 20 4036 4669 49180922 49181538 0.000000e+00 684
22 TraesCS7D01G148100 chr7B 81.226 783 136 9 6428 7207 49612687 49611913 1.020000e-173 621
23 TraesCS7D01G148100 chr7B 85.395 582 77 7 5791 6368 49613542 49612965 1.720000e-166 597
24 TraesCS7D01G148100 chr7B 76.204 706 136 23 4809 5509 49359624 49360302 2.470000e-90 344
25 TraesCS7D01G148100 chr7B 79.515 454 85 4 4809 5255 49554931 49555383 5.380000e-82 316
26 TraesCS7D01G148100 chr7B 80.353 397 75 3 4862 5255 49614451 49614055 1.950000e-76 298
27 TraesCS7D01G148100 chr7B 84.030 263 35 7 995 1253 49356746 49357005 7.160000e-61 246
28 TraesCS7D01G148100 chr7B 82.917 240 41 0 7712 7951 50680381 50680142 5.610000e-52 217
29 TraesCS7D01G148100 chr7A 95.644 2066 75 10 1 2058 98723747 98725805 0.000000e+00 3302
30 TraesCS7D01G148100 chr7A 95.404 1893 70 9 6424 8306 98729967 98731852 0.000000e+00 2998
31 TraesCS7D01G148100 chr7A 94.734 1766 69 13 2017 3770 98725804 98727557 0.000000e+00 2724
32 TraesCS7D01G148100 chr7A 94.052 1715 80 12 4724 6425 98728190 98729895 0.000000e+00 2582
33 TraesCS7D01G148100 chr7A 88.832 976 64 12 8297 9232 98732035 98733005 0.000000e+00 1157
34 TraesCS7D01G148100 chr7A 83.292 802 118 14 6428 7225 99143746 99142957 0.000000e+00 725
35 TraesCS7D01G148100 chr7A 86.427 641 81 6 5748 6385 99144666 99144029 0.000000e+00 697
36 TraesCS7D01G148100 chr7A 93.243 444 14 6 4036 4475 98727544 98727975 2.810000e-179 640
37 TraesCS7D01G148100 chr7A 82.026 701 93 18 2915 3609 99146572 99145899 4.840000e-157 566
38 TraesCS7D01G148100 chr7A 86.895 496 55 4 8719 9208 98548989 98548498 1.750000e-151 547
39 TraesCS7D01G148100 chr7A 86.373 499 59 3 8719 9208 98102875 98102377 3.790000e-148 536
40 TraesCS7D01G148100 chr7A 89.964 279 26 2 3767 4044 659430057 659430334 8.810000e-95 359
41 TraesCS7D01G148100 chr7A 75.641 702 137 25 4815 5510 99145584 99144911 1.500000e-82 318
42 TraesCS7D01G148100 chr7A 89.583 96 9 1 4575 4669 98728096 98728191 4.530000e-23 121
43 TraesCS7D01G148100 chr4B 83.534 1245 126 31 4712 5934 475931595 475932782 0.000000e+00 1090
44 TraesCS7D01G148100 chr4A 85.910 802 113 0 6483 7284 621739714 621740515 0.000000e+00 856
45 TraesCS7D01G148100 chr4A 85.997 657 88 3 5748 6402 621738808 621739462 0.000000e+00 701
46 TraesCS7D01G148100 chr4A 81.491 389 68 4 4846 5232 621737801 621738187 5.380000e-82 316
47 TraesCS7D01G148100 chr4A 82.621 351 47 10 7698 8040 621740817 621741161 1.950000e-76 298
48 TraesCS7D01G148100 chr5D 85.919 767 106 2 6483 7248 547237623 547236858 0.000000e+00 817
49 TraesCS7D01G148100 chr5D 85.866 658 87 6 5748 6402 547238530 547237876 0.000000e+00 695
50 TraesCS7D01G148100 chr5D 97.482 278 6 1 3767 4044 284119698 284119422 3.020000e-129 473
51 TraesCS7D01G148100 chr5B 83.544 869 135 8 6419 7284 690320518 690319655 0.000000e+00 806
52 TraesCS7D01G148100 chr5B 85.714 658 88 5 5748 6402 690321464 690320810 0.000000e+00 689
53 TraesCS7D01G148100 chr5B 76.807 858 134 38 4826 5632 690322467 690321624 1.110000e-113 422
54 TraesCS7D01G148100 chr5B 86.397 272 36 1 7698 7968 690319353 690319082 7.010000e-76 296
55 TraesCS7D01G148100 chr4D 98.592 284 4 0 3765 4048 24338398 24338681 3.850000e-138 503
56 TraesCS7D01G148100 chr4D 96.809 282 9 0 3765 4046 280788267 280787986 1.090000e-128 472
57 TraesCS7D01G148100 chr1D 98.227 282 5 0 3765 4046 322164093 322163812 2.320000e-135 494
58 TraesCS7D01G148100 chr1A 95.324 278 12 1 3767 4044 460600371 460600647 3.060000e-119 440
59 TraesCS7D01G148100 chr1A 93.950 281 17 0 3763 4043 531873440 531873720 8.570000e-115 425
60 TraesCS7D01G148100 chr5A 92.281 285 17 5 3765 4049 480804861 480804582 5.190000e-107 399


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G148100 chr7D 95052348 95061579 9231 False 17049.000000 17049 100.000000 1 9232 1 chr7D.!!$F1 9231
1 TraesCS7D01G148100 chr7D 96082086 96082857 771 True 726.000000 726 83.689000 6432 7225 1 chr7D.!!$R6 793
2 TraesCS7D01G148100 chr7D 96051169 96052431 1262 True 621.000000 621 76.794000 2376 3609 1 chr7D.!!$R5 1233
3 TraesCS7D01G148100 chr7D 96031100 96033162 2062 True 610.000000 634 79.387500 5354 7225 2 chr7D.!!$R8 1871
4 TraesCS7D01G148100 chr7D 95148230 95152292 4062 True 437.750000 734 79.005000 2447 7204 4 chr7D.!!$R7 4757
5 TraesCS7D01G148100 chr7B 49177090 49186124 9034 False 2130.333333 3657 92.254000 1 9232 6 chr7B.!!$F2 9231
6 TraesCS7D01G148100 chr7B 49611913 49614451 2538 True 505.333333 621 82.324667 4862 7207 3 chr7B.!!$R2 2345
7 TraesCS7D01G148100 chr7B 49356746 49362266 5520 False 501.000000 726 82.015500 995 7217 4 chr7B.!!$F3 6222
8 TraesCS7D01G148100 chr7A 98723747 98733005 9258 False 1932.000000 3302 93.070286 1 9232 7 chr7A.!!$F2 9231
9 TraesCS7D01G148100 chr7A 99142957 99146572 3615 True 576.500000 725 81.846500 2915 7225 4 chr7A.!!$R3 4310
10 TraesCS7D01G148100 chr4B 475931595 475932782 1187 False 1090.000000 1090 83.534000 4712 5934 1 chr4B.!!$F1 1222
11 TraesCS7D01G148100 chr4A 621737801 621741161 3360 False 542.750000 856 84.004750 4846 8040 4 chr4A.!!$F1 3194
12 TraesCS7D01G148100 chr5D 547236858 547238530 1672 True 756.000000 817 85.892500 5748 7248 2 chr5D.!!$R2 1500
13 TraesCS7D01G148100 chr5B 690319082 690322467 3385 True 553.250000 806 83.115500 4826 7968 4 chr5B.!!$R1 3142

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
313 322 0.581635 CGCGTTCGAGATTTTCAGCG 60.582 55.000 0.00 0.00 40.37 5.18 F
1693 1772 1.067669 GTGTCAGGCATGCGAGATCTA 59.932 52.381 12.44 0.73 0.00 1.98 F
3374 3685 0.242555 TACGCGATCACTGACAAGCA 59.757 50.000 15.93 0.00 0.00 3.91 F
3851 4170 0.107831 TGAAACACACCTAAGCGCCT 59.892 50.000 2.29 0.00 0.00 5.52 F
5138 5602 0.100682 CCGTCGTTGGACTCATCGAT 59.899 55.000 0.00 0.00 43.89 3.59 F
5881 6581 0.920763 AGGAATCCATGGACCTGGCA 60.921 55.000 20.49 0.00 36.16 4.92 F
6878 7926 0.594602 CTCCAACACTACGACGGACA 59.405 55.000 0.00 0.00 0.00 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2023 2121 1.269723 TCTAACACACGGTGAGCAGAG 59.730 52.381 16.29 5.50 36.96 3.35 R
3449 3760 1.078356 GTCTCCGAGGAAAAGGCCC 60.078 63.158 0.00 0.00 0.00 5.80 R
5093 5557 0.461548 GTGAGGAGCGGATGTCATGA 59.538 55.000 0.00 0.00 0.00 3.07 R
5640 6260 0.665068 TTATGCACTCGAACACGCGT 60.665 50.000 5.58 5.58 0.00 6.01 R
6867 7915 0.456312 GAAGCACCTGTCCGTCGTAG 60.456 60.000 0.00 0.00 0.00 3.51 R
7493 8602 1.303091 ACCGTTGCTCCGTAATTGGC 61.303 55.000 0.00 0.00 0.00 4.52 R
8821 10178 1.152589 TGGTGCCATTGTGCCTGAA 60.153 52.632 0.00 0.00 0.00 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
191 199 7.189079 TGGAATATAGGTGACATGTTGTACA 57.811 36.000 0.00 0.00 0.00 2.90
313 322 0.581635 CGCGTTCGAGATTTTCAGCG 60.582 55.000 0.00 0.00 40.37 5.18
341 350 2.967599 ACGCATTAGACAGAGCATCA 57.032 45.000 0.00 0.00 37.82 3.07
380 402 6.651225 AGTTTGAATAAGTAAGTCACAGGCTC 59.349 38.462 0.00 0.00 0.00 4.70
384 409 6.995686 TGAATAAGTAAGTCACAGGCTCAAAA 59.004 34.615 0.00 0.00 0.00 2.44
944 1000 2.352225 CGATGGCGGATTTGAAAAACCA 60.352 45.455 3.39 0.00 30.92 3.67
954 1010 3.610791 GAAAAACCAGCGGCGCTCC 62.611 63.158 34.22 11.04 36.40 4.70
1081 1139 7.389053 ACCTAACAAAGATTTGCTTCTGTAGAG 59.611 37.037 5.23 0.00 41.79 2.43
1092 1150 7.941795 TTGCTTCTGTAGAGTACTTTACAAC 57.058 36.000 22.45 14.43 30.06 3.32
1174 1232 6.098266 GGCTTTAATCCCACTGGTATGAAAAT 59.902 38.462 0.00 0.00 0.00 1.82
1308 1373 4.506802 GGTTCTTGTCCTTCCACCTACAAT 60.507 45.833 0.00 0.00 31.88 2.71
1356 1422 2.133553 CTGCGAGGTTATCATCTGCTG 58.866 52.381 0.00 0.00 0.00 4.41
1422 1492 4.955811 AAGACATCCTTCCGCATATGTA 57.044 40.909 4.29 0.00 32.87 2.29
1426 1496 3.244215 ACATCCTTCCGCATATGTAGGTG 60.244 47.826 15.68 10.46 30.99 4.00
1490 1561 1.657162 TGGAAGAGGAGGATTACCCCT 59.343 52.381 0.00 0.00 38.78 4.79
1499 1570 3.374984 GGAGGATTACCCCTGGTCTCTTA 60.375 52.174 0.00 0.00 37.09 2.10
1693 1772 1.067669 GTGTCAGGCATGCGAGATCTA 59.932 52.381 12.44 0.73 0.00 1.98
2003 2101 4.127907 GAGTCGAAGAACTCCCTTTTGTT 58.872 43.478 0.00 0.00 39.69 2.83
2028 2126 6.931281 TGTATGCTCCTATATTGTTTCTCTGC 59.069 38.462 0.00 0.00 0.00 4.26
2062 2200 6.329986 TGTTAGATCTACCCATGGAATGTCAT 59.670 38.462 15.22 0.00 44.81 3.06
2112 2274 1.281899 GCGATCTATTAGCGGGATGC 58.718 55.000 0.00 0.00 46.98 3.91
2163 2325 5.008613 TGAAAACCCTCGAAATCTTGACTTG 59.991 40.000 0.00 0.00 0.00 3.16
2181 2382 4.041723 ACTTGTTACTTGCGCAACAAATC 58.958 39.130 21.02 9.42 42.38 2.17
2204 2405 3.722728 ACCGTTAGACGAGTTGAAACT 57.277 42.857 1.51 0.00 46.05 2.66
2224 2425 1.007502 GTTGCAATGCCGCTTGTCA 60.008 52.632 0.59 0.00 0.00 3.58
2257 2458 7.323656 CGTCAGCCTAAAAGACAGTTTAATTTG 59.676 37.037 0.00 0.00 32.68 2.32
2434 2637 0.910513 CTCTTTCATCTCGTCGCACG 59.089 55.000 2.79 2.79 44.19 5.34
2622 2858 9.679661 CCTTTGGGTTAATTAAATTATGCCTTT 57.320 29.630 0.00 0.00 0.00 3.11
2821 3088 9.773328 ATATACGCATGCATATACAAACAAATC 57.227 29.630 15.19 0.00 0.00 2.17
2830 3097 8.996271 TGCATATACAAACAAATCATTTTTGCA 58.004 25.926 0.00 0.00 34.22 4.08
3374 3685 0.242555 TACGCGATCACTGACAAGCA 59.757 50.000 15.93 0.00 0.00 3.91
3685 4002 5.693104 TGCTCTGCATTTTTGTCAAGAATTC 59.307 36.000 0.00 0.00 31.71 2.17
3770 4089 4.505324 AAAGGTTAGATGAGGTAAGGGC 57.495 45.455 0.00 0.00 0.00 5.19
3771 4090 3.130734 AGGTTAGATGAGGTAAGGGCA 57.869 47.619 0.00 0.00 0.00 5.36
3772 4091 3.669949 AGGTTAGATGAGGTAAGGGCAT 58.330 45.455 0.00 0.00 0.00 4.40
3773 4092 3.648545 AGGTTAGATGAGGTAAGGGCATC 59.351 47.826 0.00 0.00 38.89 3.91
3775 4094 4.838986 GGTTAGATGAGGTAAGGGCATCTA 59.161 45.833 0.00 0.00 44.93 1.98
3776 4095 5.279556 GGTTAGATGAGGTAAGGGCATCTAC 60.280 48.000 10.35 7.01 45.90 2.59
3777 4096 3.928754 AGATGAGGTAAGGGCATCTACA 58.071 45.455 0.00 0.00 44.93 2.74
3778 4097 4.298626 AGATGAGGTAAGGGCATCTACAA 58.701 43.478 0.00 0.00 44.93 2.41
3779 4098 4.910304 AGATGAGGTAAGGGCATCTACAAT 59.090 41.667 0.00 0.00 44.93 2.71
3780 4099 4.422073 TGAGGTAAGGGCATCTACAATG 57.578 45.455 0.00 0.00 0.00 2.82
3781 4100 3.142174 GAGGTAAGGGCATCTACAATGC 58.858 50.000 1.40 1.40 43.85 3.56
3782 4101 2.780010 AGGTAAGGGCATCTACAATGCT 59.220 45.455 9.62 0.00 44.02 3.79
3783 4102 3.973973 AGGTAAGGGCATCTACAATGCTA 59.026 43.478 9.62 0.00 44.02 3.49
3784 4103 4.040952 AGGTAAGGGCATCTACAATGCTAG 59.959 45.833 9.62 0.00 44.02 3.42
3785 4104 3.498774 AAGGGCATCTACAATGCTAGG 57.501 47.619 9.62 0.00 44.02 3.02
3786 4105 2.694397 AGGGCATCTACAATGCTAGGA 58.306 47.619 9.62 0.00 44.02 2.94
3787 4106 2.636893 AGGGCATCTACAATGCTAGGAG 59.363 50.000 9.62 0.00 44.02 3.69
3788 4107 2.421619 GGCATCTACAATGCTAGGAGC 58.578 52.381 9.62 0.00 44.02 4.70
3789 4108 2.038295 GGCATCTACAATGCTAGGAGCT 59.962 50.000 9.62 0.00 42.97 4.09
3790 4109 3.495806 GGCATCTACAATGCTAGGAGCTT 60.496 47.826 9.62 0.00 42.97 3.74
3791 4110 4.262635 GGCATCTACAATGCTAGGAGCTTA 60.263 45.833 9.62 0.00 42.97 3.09
3792 4111 4.688413 GCATCTACAATGCTAGGAGCTTAC 59.312 45.833 2.84 0.00 42.97 2.34
3793 4112 5.740224 GCATCTACAATGCTAGGAGCTTACA 60.740 44.000 2.84 0.00 42.97 2.41
3794 4113 6.462500 CATCTACAATGCTAGGAGCTTACAT 58.538 40.000 0.00 0.00 42.97 2.29
3795 4114 7.606349 CATCTACAATGCTAGGAGCTTACATA 58.394 38.462 0.00 0.00 42.97 2.29
3796 4115 7.220741 TCTACAATGCTAGGAGCTTACATAG 57.779 40.000 0.00 0.00 42.97 2.23
3797 4116 5.220710 ACAATGCTAGGAGCTTACATAGG 57.779 43.478 0.00 0.00 42.97 2.57
3798 4117 3.971245 ATGCTAGGAGCTTACATAGGC 57.029 47.619 0.00 0.00 42.97 3.93
3799 4118 1.613925 TGCTAGGAGCTTACATAGGCG 59.386 52.381 0.00 0.00 42.97 5.52
3800 4119 1.670380 GCTAGGAGCTTACATAGGCGC 60.670 57.143 0.00 0.00 38.45 6.53
3801 4120 1.889829 CTAGGAGCTTACATAGGCGCT 59.110 52.381 7.64 0.00 33.04 5.92
3802 4121 1.123928 AGGAGCTTACATAGGCGCTT 58.876 50.000 7.64 0.52 33.04 4.68
3803 4122 2.317040 AGGAGCTTACATAGGCGCTTA 58.683 47.619 7.64 3.82 33.04 3.09
3804 4123 2.900546 AGGAGCTTACATAGGCGCTTAT 59.099 45.455 7.64 6.83 33.04 1.73
3805 4124 4.087182 AGGAGCTTACATAGGCGCTTATA 58.913 43.478 12.10 0.73 33.04 0.98
3806 4125 4.158764 AGGAGCTTACATAGGCGCTTATAG 59.841 45.833 12.10 7.51 33.04 1.31
3807 4126 4.158025 GGAGCTTACATAGGCGCTTATAGA 59.842 45.833 12.10 0.09 33.04 1.98
3808 4127 5.061920 AGCTTACATAGGCGCTTATAGAC 57.938 43.478 12.10 3.57 33.04 2.59
3809 4128 4.523173 AGCTTACATAGGCGCTTATAGACA 59.477 41.667 12.10 0.00 33.04 3.41
3810 4129 5.010719 AGCTTACATAGGCGCTTATAGACAA 59.989 40.000 12.10 3.47 33.04 3.18
3811 4130 5.694910 GCTTACATAGGCGCTTATAGACAAA 59.305 40.000 12.10 2.19 0.00 2.83
3812 4131 6.202188 GCTTACATAGGCGCTTATAGACAAAA 59.798 38.462 12.10 0.62 0.00 2.44
3813 4132 7.095187 GCTTACATAGGCGCTTATAGACAAAAT 60.095 37.037 12.10 0.00 0.00 1.82
3814 4133 9.419297 CTTACATAGGCGCTTATAGACAAAATA 57.581 33.333 12.10 0.00 0.00 1.40
3815 4134 9.767228 TTACATAGGCGCTTATAGACAAAATAA 57.233 29.630 12.10 0.00 0.00 1.40
3816 4135 8.848474 ACATAGGCGCTTATAGACAAAATAAT 57.152 30.769 12.10 0.00 0.00 1.28
3817 4136 9.938280 ACATAGGCGCTTATAGACAAAATAATA 57.062 29.630 12.10 0.00 0.00 0.98
3847 4166 9.476202 AAATAAAAATCTGAAACACACCTAAGC 57.524 29.630 0.00 0.00 0.00 3.09
3848 4167 4.749245 AAATCTGAAACACACCTAAGCG 57.251 40.909 0.00 0.00 0.00 4.68
3849 4168 1.508632 TCTGAAACACACCTAAGCGC 58.491 50.000 0.00 0.00 0.00 5.92
3850 4169 0.517316 CTGAAACACACCTAAGCGCC 59.483 55.000 2.29 0.00 0.00 6.53
3851 4170 0.107831 TGAAACACACCTAAGCGCCT 59.892 50.000 2.29 0.00 0.00 5.52
3852 4171 0.796927 GAAACACACCTAAGCGCCTC 59.203 55.000 2.29 0.00 0.00 4.70
3853 4172 0.107831 AAACACACCTAAGCGCCTCA 59.892 50.000 2.29 0.00 0.00 3.86
3854 4173 0.324943 AACACACCTAAGCGCCTCAT 59.675 50.000 2.29 0.00 0.00 2.90
3855 4174 0.108138 ACACACCTAAGCGCCTCATC 60.108 55.000 2.29 0.00 0.00 2.92
3856 4175 0.811616 CACACCTAAGCGCCTCATCC 60.812 60.000 2.29 0.00 0.00 3.51
3857 4176 1.227674 CACCTAAGCGCCTCATCCC 60.228 63.158 2.29 0.00 0.00 3.85
3858 4177 1.383248 ACCTAAGCGCCTCATCCCT 60.383 57.895 2.29 0.00 0.00 4.20
3859 4178 1.369321 CCTAAGCGCCTCATCCCTC 59.631 63.158 2.29 0.00 0.00 4.30
3860 4179 1.402896 CCTAAGCGCCTCATCCCTCA 61.403 60.000 2.29 0.00 0.00 3.86
3861 4180 0.465705 CTAAGCGCCTCATCCCTCAA 59.534 55.000 2.29 0.00 0.00 3.02
3862 4181 0.178068 TAAGCGCCTCATCCCTCAAC 59.822 55.000 2.29 0.00 0.00 3.18
3863 4182 2.859273 AAGCGCCTCATCCCTCAACG 62.859 60.000 2.29 0.00 0.00 4.10
3864 4183 2.892425 CGCCTCATCCCTCAACGC 60.892 66.667 0.00 0.00 0.00 4.84
3865 4184 2.586792 GCCTCATCCCTCAACGCT 59.413 61.111 0.00 0.00 0.00 5.07
3866 4185 1.823295 GCCTCATCCCTCAACGCTA 59.177 57.895 0.00 0.00 0.00 4.26
3867 4186 0.249657 GCCTCATCCCTCAACGCTAG 60.250 60.000 0.00 0.00 0.00 3.42
3868 4187 1.403814 CCTCATCCCTCAACGCTAGA 58.596 55.000 0.00 0.00 0.00 2.43
3869 4188 1.067821 CCTCATCCCTCAACGCTAGAC 59.932 57.143 0.00 0.00 0.00 2.59
3886 4205 7.213252 CGCTAGACGCTAATTAACTAAACAA 57.787 36.000 0.00 0.00 36.13 2.83
3887 4206 7.109257 CGCTAGACGCTAATTAACTAAACAAC 58.891 38.462 0.00 0.00 36.13 3.32
3888 4207 7.109257 GCTAGACGCTAATTAACTAAACAACG 58.891 38.462 0.00 0.00 35.14 4.10
3889 4208 7.201384 GCTAGACGCTAATTAACTAAACAACGT 60.201 37.037 0.00 0.00 35.14 3.99
3890 4209 6.814343 AGACGCTAATTAACTAAACAACGTG 58.186 36.000 0.00 0.00 0.00 4.49
3891 4210 5.919196 ACGCTAATTAACTAAACAACGTGG 58.081 37.500 0.00 0.00 0.00 4.94
3893 4212 6.011277 CGCTAATTAACTAAACAACGTGGAC 58.989 40.000 0.00 0.00 0.00 4.02
3894 4213 6.011277 GCTAATTAACTAAACAACGTGGACG 58.989 40.000 0.00 0.00 46.33 4.79
3895 4214 3.857923 TTAACTAAACAACGTGGACGC 57.142 42.857 0.00 0.00 44.43 5.19
3898 4217 3.096489 ACTAAACAACGTGGACGCTAA 57.904 42.857 0.00 0.00 44.43 3.09
3899 4218 3.054878 ACTAAACAACGTGGACGCTAAG 58.945 45.455 0.00 0.00 44.43 2.18
3900 4219 1.944032 AAACAACGTGGACGCTAAGT 58.056 45.000 0.00 0.00 44.43 2.24
3901 4220 2.798976 AACAACGTGGACGCTAAGTA 57.201 45.000 0.00 0.00 44.43 2.24
3902 4221 2.056094 ACAACGTGGACGCTAAGTAC 57.944 50.000 0.00 0.00 44.43 2.73
3905 4224 0.524862 ACGTGGACGCTAAGTACTGG 59.475 55.000 0.00 0.00 44.43 4.00
3907 4226 1.200716 CGTGGACGCTAAGTACTGGAA 59.799 52.381 0.00 0.00 33.83 3.53
3908 4227 2.731341 CGTGGACGCTAAGTACTGGAAG 60.731 54.545 0.00 0.00 42.29 3.46
3909 4228 1.822990 TGGACGCTAAGTACTGGAAGG 59.177 52.381 0.00 0.00 39.30 3.46
3911 4230 2.494870 GGACGCTAAGTACTGGAAGGAA 59.505 50.000 0.00 0.00 39.30 3.36
3912 4231 3.056322 GGACGCTAAGTACTGGAAGGAAA 60.056 47.826 0.00 0.00 39.30 3.13
3913 4232 4.562143 GGACGCTAAGTACTGGAAGGAAAA 60.562 45.833 0.00 0.00 39.30 2.29
3914 4233 5.161943 ACGCTAAGTACTGGAAGGAAAAT 57.838 39.130 0.00 0.00 39.30 1.82
3916 4235 5.175859 CGCTAAGTACTGGAAGGAAAATGA 58.824 41.667 0.00 0.00 39.30 2.57
3917 4236 5.063564 CGCTAAGTACTGGAAGGAAAATGAC 59.936 44.000 0.00 0.00 39.30 3.06
3918 4237 5.354513 GCTAAGTACTGGAAGGAAAATGACC 59.645 44.000 0.00 0.00 39.30 4.02
3919 4238 4.993705 AGTACTGGAAGGAAAATGACCA 57.006 40.909 0.00 0.00 39.30 4.02
3920 4239 5.319043 AGTACTGGAAGGAAAATGACCAA 57.681 39.130 0.00 0.00 39.30 3.67
3921 4240 5.316987 AGTACTGGAAGGAAAATGACCAAG 58.683 41.667 0.00 0.00 39.30 3.61
3922 4241 2.893489 ACTGGAAGGAAAATGACCAAGC 59.107 45.455 0.00 0.00 39.30 4.01
3923 4242 1.885887 TGGAAGGAAAATGACCAAGCG 59.114 47.619 0.00 0.00 0.00 4.68
3924 4243 1.402852 GGAAGGAAAATGACCAAGCGC 60.403 52.381 0.00 0.00 0.00 5.92
3925 4244 0.603065 AAGGAAAATGACCAAGCGCC 59.397 50.000 2.29 0.00 0.00 6.53
3926 4245 1.154035 GGAAAATGACCAAGCGCCG 60.154 57.895 2.29 0.00 0.00 6.46
3928 4247 2.542211 GAAAATGACCAAGCGCCGGG 62.542 60.000 17.11 15.11 0.00 5.73
3929 4248 3.860930 AAATGACCAAGCGCCGGGT 62.861 57.895 19.41 19.41 40.96 5.28
3940 4259 4.067913 GCCGGGTGCATGGTTTGG 62.068 66.667 2.18 0.00 40.77 3.28
3941 4260 4.067913 CCGGGTGCATGGTTTGGC 62.068 66.667 0.00 0.00 0.00 4.52
3942 4261 4.418401 CGGGTGCATGGTTTGGCG 62.418 66.667 0.00 0.00 0.00 5.69
3943 4262 3.302344 GGGTGCATGGTTTGGCGT 61.302 61.111 0.00 0.00 0.00 5.68
3944 4263 2.258286 GGTGCATGGTTTGGCGTC 59.742 61.111 0.00 0.00 0.00 5.19
3946 4265 2.281139 TGCATGGTTTGGCGTCGA 60.281 55.556 0.00 0.00 0.00 4.20
3947 4266 1.673993 TGCATGGTTTGGCGTCGAT 60.674 52.632 0.00 0.00 0.00 3.59
3948 4267 1.226379 GCATGGTTTGGCGTCGATG 60.226 57.895 0.00 0.00 0.00 3.84
3949 4268 1.226379 CATGGTTTGGCGTCGATGC 60.226 57.895 21.53 21.53 0.00 3.91
3957 4276 3.499737 GCGTCGATGCCAGGGTTG 61.500 66.667 19.11 0.00 0.00 3.77
3958 4277 2.264480 CGTCGATGCCAGGGTTGA 59.736 61.111 0.00 0.00 0.00 3.18
3959 4278 2.100631 CGTCGATGCCAGGGTTGAC 61.101 63.158 0.00 0.00 0.00 3.18
3961 4280 1.003839 TCGATGCCAGGGTTGACAC 60.004 57.895 0.00 0.00 0.00 3.67
3962 4281 2.040544 CGATGCCAGGGTTGACACC 61.041 63.158 0.00 0.00 43.37 4.16
3965 4284 2.282462 GCCAGGGTTGACACCAGG 60.282 66.667 0.00 0.00 46.43 4.45
3967 4286 2.078452 CCAGGGTTGACACCAGGAT 58.922 57.895 0.00 0.00 46.43 3.24
3968 4287 0.405585 CCAGGGTTGACACCAGGATT 59.594 55.000 0.00 0.00 46.43 3.01
3970 4289 2.618045 CCAGGGTTGACACCAGGATTAC 60.618 54.545 0.00 0.00 46.43 1.89
3971 4290 2.039746 CAGGGTTGACACCAGGATTACA 59.960 50.000 0.00 0.00 46.43 2.41
3972 4291 2.039879 AGGGTTGACACCAGGATTACAC 59.960 50.000 0.00 0.00 46.43 2.90
3973 4292 2.433436 GGTTGACACCAGGATTACACC 58.567 52.381 0.00 0.00 43.61 4.16
3976 4295 0.107848 GACACCAGGATTACACCCGG 60.108 60.000 0.00 0.00 0.00 5.73
3977 4296 1.451387 CACCAGGATTACACCCGGC 60.451 63.158 0.00 0.00 0.00 6.13
3978 4297 1.921346 ACCAGGATTACACCCGGCA 60.921 57.895 0.00 0.00 0.00 5.69
3979 4298 1.301623 CCAGGATTACACCCGGCAA 59.698 57.895 0.00 0.00 0.00 4.52
3980 4299 1.029947 CCAGGATTACACCCGGCAAC 61.030 60.000 0.00 0.00 0.00 4.17
3981 4300 1.029947 CAGGATTACACCCGGCAACC 61.030 60.000 0.00 0.00 0.00 3.77
3983 4302 2.748647 ATTACACCCGGCAACCGC 60.749 61.111 0.00 0.00 46.86 5.68
3984 4303 3.262448 ATTACACCCGGCAACCGCT 62.262 57.895 0.00 0.00 46.86 5.52
3985 4304 1.901654 ATTACACCCGGCAACCGCTA 61.902 55.000 0.00 0.00 46.86 4.26
3986 4305 2.109517 TTACACCCGGCAACCGCTAA 62.110 55.000 0.00 0.00 46.86 3.09
3987 4306 1.901654 TACACCCGGCAACCGCTAAT 61.902 55.000 0.00 0.00 46.86 1.73
3988 4307 2.124860 ACCCGGCAACCGCTAATC 60.125 61.111 0.00 0.00 46.86 1.75
3989 4308 2.189521 CCCGGCAACCGCTAATCT 59.810 61.111 0.00 0.00 46.86 2.40
3990 4309 2.180204 CCCGGCAACCGCTAATCTG 61.180 63.158 0.00 0.00 46.86 2.90
3991 4310 2.709475 CGGCAACCGCTAATCTGC 59.291 61.111 0.00 0.00 41.17 4.26
3992 4311 3.111038 GGCAACCGCTAATCTGCC 58.889 61.111 0.00 0.00 46.95 4.85
3993 4312 2.709475 GCAACCGCTAATCTGCCG 59.291 61.111 0.00 0.00 34.30 5.69
3994 4313 1.813753 GCAACCGCTAATCTGCCGA 60.814 57.895 0.00 0.00 34.30 5.54
3995 4314 1.766143 GCAACCGCTAATCTGCCGAG 61.766 60.000 0.00 0.00 34.30 4.63
3996 4315 0.179111 CAACCGCTAATCTGCCGAGA 60.179 55.000 0.00 0.00 0.00 4.04
3997 4316 0.753262 AACCGCTAATCTGCCGAGAT 59.247 50.000 0.00 0.00 41.00 2.75
3999 4318 1.961394 ACCGCTAATCTGCCGAGATTA 59.039 47.619 6.39 6.39 45.50 1.75
4000 4319 2.563179 ACCGCTAATCTGCCGAGATTAT 59.437 45.455 6.89 0.00 45.89 1.28
4001 4320 2.926200 CCGCTAATCTGCCGAGATTATG 59.074 50.000 6.89 4.11 45.89 1.90
4002 4321 3.367395 CCGCTAATCTGCCGAGATTATGA 60.367 47.826 6.89 0.00 45.89 2.15
4003 4322 4.237724 CGCTAATCTGCCGAGATTATGAA 58.762 43.478 6.89 0.00 45.89 2.57
4004 4323 4.090642 CGCTAATCTGCCGAGATTATGAAC 59.909 45.833 6.89 0.00 45.89 3.18
4005 4324 4.390297 GCTAATCTGCCGAGATTATGAACC 59.610 45.833 6.89 0.00 45.89 3.62
4006 4325 4.696479 AATCTGCCGAGATTATGAACCT 57.304 40.909 0.00 0.00 45.50 3.50
4007 4326 3.459232 TCTGCCGAGATTATGAACCTG 57.541 47.619 0.00 0.00 0.00 4.00
4008 4327 2.103094 TCTGCCGAGATTATGAACCTGG 59.897 50.000 0.00 0.00 0.00 4.45
4009 4328 1.230324 GCCGAGATTATGAACCTGGC 58.770 55.000 0.00 0.00 0.00 4.85
4010 4329 1.502231 CCGAGATTATGAACCTGGCG 58.498 55.000 0.00 0.00 0.00 5.69
4011 4330 0.861837 CGAGATTATGAACCTGGCGC 59.138 55.000 0.00 0.00 0.00 6.53
4012 4331 1.230324 GAGATTATGAACCTGGCGCC 58.770 55.000 22.73 22.73 0.00 6.53
4013 4332 0.839946 AGATTATGAACCTGGCGCCT 59.160 50.000 29.70 6.86 0.00 5.52
4014 4333 0.947244 GATTATGAACCTGGCGCCTG 59.053 55.000 29.70 27.29 0.00 4.85
4015 4334 0.466189 ATTATGAACCTGGCGCCTGG 60.466 55.000 41.29 41.29 40.33 4.45
4016 4335 3.697439 TATGAACCTGGCGCCTGGC 62.697 63.158 42.41 30.42 38.41 4.85
4031 4350 2.675075 GGCCTAAACGCCCAGCAA 60.675 61.111 0.00 0.00 43.66 3.91
4032 4351 2.052104 GGCCTAAACGCCCAGCAAT 61.052 57.895 0.00 0.00 43.66 3.56
4033 4352 1.139520 GCCTAAACGCCCAGCAATG 59.860 57.895 0.00 0.00 0.00 2.82
4034 4353 1.809207 CCTAAACGCCCAGCAATGG 59.191 57.895 0.00 0.00 0.00 3.16
4035 4354 0.679640 CCTAAACGCCCAGCAATGGA 60.680 55.000 0.00 0.00 0.00 3.41
4036 4355 0.734889 CTAAACGCCCAGCAATGGAG 59.265 55.000 0.00 0.00 0.00 3.86
4037 4356 0.326595 TAAACGCCCAGCAATGGAGA 59.673 50.000 0.00 0.00 0.00 3.71
4038 4357 0.323725 AAACGCCCAGCAATGGAGAT 60.324 50.000 0.00 0.00 0.00 2.75
4039 4358 1.033746 AACGCCCAGCAATGGAGATG 61.034 55.000 0.00 0.00 0.00 2.90
4040 4359 2.842256 CGCCCAGCAATGGAGATGC 61.842 63.158 0.00 0.00 44.15 3.91
4041 4360 2.496291 GCCCAGCAATGGAGATGCC 61.496 63.158 0.00 0.00 44.91 4.40
4115 4434 6.261158 TGTTTTGACGACCTCAATAAACATCA 59.739 34.615 0.00 0.00 38.74 3.07
4203 4523 1.639298 CTTGCTTCCTTCCTTCCGCG 61.639 60.000 0.00 0.00 0.00 6.46
4396 4723 4.493220 CGTACTTTTCTTGCATCTGCTAGC 60.493 45.833 8.10 8.10 42.26 3.42
4397 4724 3.683802 ACTTTTCTTGCATCTGCTAGCT 58.316 40.909 17.23 0.00 42.26 3.32
4398 4725 4.836825 ACTTTTCTTGCATCTGCTAGCTA 58.163 39.130 17.23 4.41 42.26 3.32
4399 4726 4.874966 ACTTTTCTTGCATCTGCTAGCTAG 59.125 41.667 16.84 16.84 42.26 3.42
4400 4727 3.465742 TTCTTGCATCTGCTAGCTAGG 57.534 47.619 22.10 6.77 42.26 3.02
4484 4811 6.688637 TTATTTACAGCGTAGAGAGCAGTA 57.311 37.500 0.00 0.00 35.90 2.74
4487 4814 5.670149 TTACAGCGTAGAGAGCAGTATAC 57.330 43.478 0.00 0.00 36.68 1.47
4488 4815 3.811083 ACAGCGTAGAGAGCAGTATACT 58.189 45.455 0.00 0.00 32.58 2.12
4489 4816 4.958509 ACAGCGTAGAGAGCAGTATACTA 58.041 43.478 4.74 0.00 32.58 1.82
4491 4818 5.410132 ACAGCGTAGAGAGCAGTATACTATG 59.590 44.000 4.74 0.00 32.58 2.23
4586 4957 2.675844 CGCTGGTCCGTTTGATAATTCA 59.324 45.455 0.00 0.00 0.00 2.57
4587 4958 3.126171 CGCTGGTCCGTTTGATAATTCAA 59.874 43.478 0.00 0.00 40.09 2.69
4590 4961 3.437395 TGGTCCGTTTGATAATTCAACGG 59.563 43.478 15.01 15.01 46.41 4.44
4669 5044 2.168936 TGGAAACAACCTGACGTACAGT 59.831 45.455 12.10 0.00 40.53 3.55
4670 5045 2.542595 GGAAACAACCTGACGTACAGTG 59.457 50.000 12.10 8.35 44.40 3.66
4671 5046 1.578583 AACAACCTGACGTACAGTGC 58.421 50.000 12.10 0.00 44.40 4.40
4673 5048 1.006571 AACCTGACGTACAGTGCCG 60.007 57.895 12.10 1.59 44.40 5.69
4674 5049 1.457823 AACCTGACGTACAGTGCCGA 61.458 55.000 9.51 0.00 44.40 5.54
4675 5050 1.248785 ACCTGACGTACAGTGCCGAT 61.249 55.000 9.51 0.00 44.40 4.18
4676 5051 0.525668 CCTGACGTACAGTGCCGATC 60.526 60.000 9.51 4.72 44.40 3.69
4677 5052 0.861866 CTGACGTACAGTGCCGATCG 60.862 60.000 8.51 8.51 41.30 3.69
4678 5053 2.202570 ACGTACAGTGCCGATCGC 60.203 61.111 10.32 6.08 38.31 4.58
4690 5065 3.455619 GCCGATCGCAATACCATAAAG 57.544 47.619 10.32 0.00 37.47 1.85
4691 5066 2.159627 GCCGATCGCAATACCATAAAGG 59.840 50.000 10.32 0.00 39.80 3.11
4692 5067 3.659786 CCGATCGCAATACCATAAAGGA 58.340 45.455 10.32 0.00 41.22 3.36
4693 5068 3.432252 CCGATCGCAATACCATAAAGGAC 59.568 47.826 10.32 0.00 41.22 3.85
4694 5069 3.432252 CGATCGCAATACCATAAAGGACC 59.568 47.826 0.26 0.00 41.22 4.46
4695 5070 3.202829 TCGCAATACCATAAAGGACCC 57.797 47.619 0.00 0.00 41.22 4.46
4696 5071 2.506231 TCGCAATACCATAAAGGACCCA 59.494 45.455 0.00 0.00 41.22 4.51
4697 5072 2.878406 CGCAATACCATAAAGGACCCAG 59.122 50.000 0.00 0.00 41.22 4.45
4698 5073 3.684413 CGCAATACCATAAAGGACCCAGT 60.684 47.826 0.00 0.00 41.22 4.00
4699 5074 3.883489 GCAATACCATAAAGGACCCAGTC 59.117 47.826 0.00 0.00 41.22 3.51
4700 5075 4.627741 GCAATACCATAAAGGACCCAGTCA 60.628 45.833 0.00 0.00 41.22 3.41
4701 5076 5.694995 CAATACCATAAAGGACCCAGTCAT 58.305 41.667 0.00 0.00 41.22 3.06
4702 5077 6.690460 GCAATACCATAAAGGACCCAGTCATA 60.690 42.308 0.00 0.00 41.22 2.15
4703 5078 7.287061 CAATACCATAAAGGACCCAGTCATAA 58.713 38.462 0.00 0.00 41.22 1.90
4704 5079 5.789574 ACCATAAAGGACCCAGTCATAAA 57.210 39.130 0.00 0.00 41.22 1.40
4705 5080 6.147437 ACCATAAAGGACCCAGTCATAAAA 57.853 37.500 0.00 0.00 41.22 1.52
4706 5081 6.557568 ACCATAAAGGACCCAGTCATAAAAA 58.442 36.000 0.00 0.00 41.22 1.94
4735 5111 4.835615 TCCCAGAGATTAGCCTCTTGATAC 59.164 45.833 0.00 0.00 41.29 2.24
4787 5245 5.172591 CACGCATATGCATGTTTGAGAATTC 59.827 40.000 26.52 0.00 42.21 2.17
4788 5246 4.678287 CGCATATGCATGTTTGAGAATTCC 59.322 41.667 26.52 0.00 42.21 3.01
4789 5247 4.986659 GCATATGCATGTTTGAGAATTCCC 59.013 41.667 22.84 0.00 41.59 3.97
4790 5248 5.221382 GCATATGCATGTTTGAGAATTCCCT 60.221 40.000 22.84 0.00 41.59 4.20
4791 5249 6.684613 GCATATGCATGTTTGAGAATTCCCTT 60.685 38.462 22.84 0.00 41.59 3.95
4818 5281 1.207329 GGGACGGCTGACAAGTATCTT 59.793 52.381 0.00 0.00 0.00 2.40
4872 5335 1.669115 CTTGTGGTCAGCGACTGGG 60.669 63.158 8.26 0.00 32.47 4.45
5138 5602 0.100682 CCGTCGTTGGACTCATCGAT 59.899 55.000 0.00 0.00 43.89 3.59
5166 5632 1.324005 GGTAGAGGCCGAGAGCAACT 61.324 60.000 0.00 0.00 46.50 3.16
5276 5828 1.594862 GCAATACCAGCTTGCTCTACG 59.405 52.381 0.00 0.00 44.36 3.51
5361 5919 6.036470 GCATGCCATAGAAGTAAAGTTTTCC 58.964 40.000 6.36 0.00 0.00 3.13
5404 5964 5.715279 TCTTAGGTGTAGAGTGTGCAATAGT 59.285 40.000 0.00 0.00 0.00 2.12
5430 5990 7.870954 TCCAGCTGTTATACATTTAAGGTATCG 59.129 37.037 13.81 0.00 33.68 2.92
5479 6039 6.218019 TGCAAGAAATCAATCTCTGTTTTGG 58.782 36.000 0.00 0.00 28.98 3.28
5558 6150 4.892345 TCAGATCTCACTATGTTAGCAGCT 59.108 41.667 0.00 0.00 0.00 4.24
5559 6151 5.009510 TCAGATCTCACTATGTTAGCAGCTC 59.990 44.000 0.00 0.00 0.00 4.09
5605 6211 6.773976 TTTCTATCTATTTTGCTGTTGGGG 57.226 37.500 0.00 0.00 0.00 4.96
5719 6391 3.406764 ACCATCTTTGTGTTCTCAGCTC 58.593 45.455 0.00 0.00 0.00 4.09
5723 6395 1.534595 CTTTGTGTTCTCAGCTCAGCC 59.465 52.381 0.00 0.00 0.00 4.85
5881 6581 0.920763 AGGAATCCATGGACCTGGCA 60.921 55.000 20.49 0.00 36.16 4.92
5968 6668 3.338250 ACCACCACCATGGGCGAT 61.338 61.111 18.09 0.00 44.81 4.58
5989 6689 5.060816 CGATTGCAAGCGTATCAAACAAATT 59.939 36.000 27.75 0.00 32.40 1.82
6295 6995 5.041287 TCTGTGTTTGAGAACTACGTTCAG 58.959 41.667 9.16 0.00 44.11 3.02
6405 7106 2.543848 TCTTGTCAACTGCATCAACGAC 59.456 45.455 0.00 0.00 0.00 4.34
6418 7375 3.367992 TCAACGACAACTAGCCGTAAA 57.632 42.857 0.00 0.00 35.28 2.01
6514 7562 3.203710 TGATGGGAGGAGAAATCAGCATT 59.796 43.478 0.00 0.00 0.00 3.56
6867 7915 3.112709 GAGCGGCGACTCCAACAC 61.113 66.667 12.98 0.00 34.01 3.32
6878 7926 0.594602 CTCCAACACTACGACGGACA 59.405 55.000 0.00 0.00 0.00 4.02
6979 8027 1.448540 CTTCGGCCTGCTCGTCATT 60.449 57.895 0.00 0.00 0.00 2.57
7340 8449 0.721718 GGCGTCTTCTGAAATCACGG 59.278 55.000 14.36 0.00 0.00 4.94
7345 8454 1.003839 TTCTGAAATCACGGCCGCT 60.004 52.632 28.58 10.12 0.00 5.52
7408 8517 4.738998 CAGGGACCGGCCAATGCA 62.739 66.667 15.49 0.00 40.13 3.96
7510 8619 1.302383 TGGCCAATTACGGAGCAACG 61.302 55.000 0.61 0.00 40.31 4.10
7662 8774 3.438087 CAGGTACATTTCTCCAGCAACAG 59.562 47.826 0.00 0.00 0.00 3.16
7664 8776 1.985473 ACATTTCTCCAGCAACAGCA 58.015 45.000 0.00 0.00 0.00 4.41
7690 8803 1.150081 CACATCAGCCCCATCCTCC 59.850 63.158 0.00 0.00 0.00 4.30
7976 9090 6.255887 CCAAGTTAATAACTGATCACCGAGAC 59.744 42.308 6.41 0.00 41.91 3.36
7994 9117 1.445582 CTCTTCGTTCCCCGTTCCG 60.446 63.158 0.00 0.00 37.94 4.30
8085 9210 2.876550 GTCACTGAAAACCCACCTACAC 59.123 50.000 0.00 0.00 0.00 2.90
8197 9323 8.336235 TCAGGTCAGGTTTATTTCCAGAATTAT 58.664 33.333 0.00 0.00 0.00 1.28
8281 9407 8.634475 ATTTTCAGAGTTTGTGTTTTTAGAGC 57.366 30.769 0.00 0.00 0.00 4.09
8325 9644 5.997129 TGTTTTCAGAGCATGTGATTAGACA 59.003 36.000 0.00 0.00 38.60 3.41
8343 9662 7.801716 TTAGACACCATATATTTGCTTCCAC 57.198 36.000 0.00 0.00 0.00 4.02
8353 9672 0.178967 TTGCTTCCACTGCCCATTCA 60.179 50.000 0.00 0.00 0.00 2.57
8508 9831 8.741841 GTGGACTAGCCTAAATATTACTAGGAG 58.258 40.741 14.87 8.22 37.47 3.69
8557 9880 0.249741 AAAGTTCACACCCGAGGTCG 60.250 55.000 0.00 0.00 31.02 4.79
8591 9914 2.268802 ACTTCGTCGCTCTCCTGCA 61.269 57.895 0.00 0.00 0.00 4.41
8684 10021 9.226606 ACGATTTTAAAGGAAATATGACTGTCA 57.773 29.630 13.60 13.60 29.75 3.58
8717 10074 8.025445 GTGAAATTTTAAGCATGACTGATGTCT 58.975 33.333 0.00 0.00 43.29 3.41
8821 10178 4.500887 CCCAAATCGTACATATCGGTCTGT 60.501 45.833 0.00 0.00 0.00 3.41
8957 10317 7.908601 GGTATTTTGAATGTCTTTCGGTATCAC 59.091 37.037 0.00 0.00 37.13 3.06
8975 10335 1.209504 CACGAGGAAGGGGCAGAATTA 59.790 52.381 0.00 0.00 0.00 1.40
9051 10411 5.362717 TCTCAGAAGGACAAACACTAACAGA 59.637 40.000 0.00 0.00 0.00 3.41
9062 10422 6.601613 ACAAACACTAACAGACATTCTTTCCA 59.398 34.615 0.00 0.00 0.00 3.53
9125 10485 5.522456 CAAAGCTAGCATCAAGTTTTGTCA 58.478 37.500 18.83 0.00 39.15 3.58
9165 10525 2.292292 GGATGTGCAACGGTAACTTGTT 59.708 45.455 0.00 0.00 42.39 2.83
9178 10538 5.297527 CGGTAACTTGTTAACAGAAAACCCT 59.702 40.000 18.74 2.39 0.00 4.34
9228 10588 6.998074 TGAGATATACAAGAATCCCGCAAATT 59.002 34.615 0.00 0.00 0.00 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 47 8.663025 CATATGTAGCTTATTTGCCTCACTATG 58.337 37.037 0.00 0.00 0.00 2.23
95 103 7.760131 TTTGTGCGTATTATAGTTAGTGGAC 57.240 36.000 0.00 0.00 0.00 4.02
191 199 1.323412 AGAGCTGTTCGTGTGAGACT 58.677 50.000 0.00 0.00 0.00 3.24
313 322 5.107298 GCTCTGTCTAATGCGTTAATCATCC 60.107 44.000 0.00 0.00 0.00 3.51
384 409 5.841957 AAGATGAACTGTGTCTTGCTTTT 57.158 34.783 3.49 0.00 31.41 2.27
849 905 0.464916 GGTATTTACCCCTGCACCGG 60.465 60.000 0.00 0.00 40.53 5.28
926 982 1.270041 GCTGGTTTTTCAAATCCGCCA 60.270 47.619 0.00 0.00 31.76 5.69
954 1010 1.143305 CGCTCTGAATTATGGGCTCG 58.857 55.000 1.36 0.00 0.00 5.03
962 1018 3.086282 GGGGTTTTTCCGCTCTGAATTA 58.914 45.455 0.00 0.00 44.48 1.40
1081 1139 5.107220 CCATCGTGGAAGTGTTGTAAAGTAC 60.107 44.000 0.00 0.00 40.96 2.73
1092 1150 0.742281 CTCCAGCCATCGTGGAAGTG 60.742 60.000 8.04 2.62 43.68 3.16
1174 1232 9.515226 ACAAAAAGAAGCCAAGTACTATGAATA 57.485 29.630 0.00 0.00 0.00 1.75
1267 1332 6.305693 AGAACCAAGAAATGAGAAAAGTCG 57.694 37.500 0.00 0.00 0.00 4.18
1269 1334 7.410120 ACAAGAACCAAGAAATGAGAAAAGT 57.590 32.000 0.00 0.00 0.00 2.66
1308 1373 5.001232 AGTTTTCGCTCAGGTAAGCAATAA 58.999 37.500 0.00 0.00 42.62 1.40
1422 1492 4.017126 TCTATTGTCGAGATCACACACCT 58.983 43.478 0.00 0.00 0.00 4.00
1490 1561 1.409064 CACGCCTATGCTAAGAGACCA 59.591 52.381 0.00 0.00 34.43 4.02
1499 1570 2.472695 TTGAAACTCACGCCTATGCT 57.527 45.000 0.00 0.00 34.43 3.79
1595 1674 8.939929 CAGTTAGATCTACTTTTCAAATCTGCA 58.060 33.333 0.67 0.00 0.00 4.41
2003 2101 6.931281 GCAGAGAAACAATATAGGAGCATACA 59.069 38.462 0.00 0.00 0.00 2.29
2023 2121 1.269723 TCTAACACACGGTGAGCAGAG 59.730 52.381 16.29 5.50 36.96 3.35
2028 2126 3.181489 GGGTAGATCTAACACACGGTGAG 60.181 52.174 19.35 9.81 36.96 3.51
2181 2382 5.218139 AGTTTCAACTCGTCTAACGGTAAG 58.782 41.667 0.00 0.00 42.81 2.34
2204 2405 2.254951 CAAGCGGCATTGCAACGA 59.745 55.556 11.39 0.00 37.31 3.85
2213 2414 4.269523 AGGCCTTGACAAGCGGCA 62.270 61.111 22.90 0.00 45.53 5.69
2434 2637 2.348872 CGCTCACGGCATCATCATTTAC 60.349 50.000 0.00 0.00 41.91 2.01
2965 3265 2.899900 TGTATGATATCTCGGCCAGCTT 59.100 45.455 2.24 0.00 0.00 3.74
3396 3707 1.635663 CGGCGTCCAAAGGCTTGTAG 61.636 60.000 0.00 0.00 36.52 2.74
3424 3735 3.036084 CTTCGCGTCGTGCTGGTT 61.036 61.111 5.77 0.00 43.27 3.67
3449 3760 1.078356 GTCTCCGAGGAAAAGGCCC 60.078 63.158 0.00 0.00 0.00 5.80
3685 4002 6.491062 TGGAAGAAATATTACATGCTGGGATG 59.509 38.462 0.00 0.65 0.00 3.51
3763 4082 4.040461 TCCTAGCATTGTAGATGCCCTTAC 59.960 45.833 7.33 0.00 45.59 2.34
3764 4083 4.231273 TCCTAGCATTGTAGATGCCCTTA 58.769 43.478 7.33 0.00 45.59 2.69
3765 4084 3.048600 TCCTAGCATTGTAGATGCCCTT 58.951 45.455 7.33 0.00 45.59 3.95
3766 4085 2.636893 CTCCTAGCATTGTAGATGCCCT 59.363 50.000 7.33 0.00 45.59 5.19
3767 4086 2.873649 GCTCCTAGCATTGTAGATGCCC 60.874 54.545 7.33 0.00 45.59 5.36
3768 4087 2.038295 AGCTCCTAGCATTGTAGATGCC 59.962 50.000 7.33 0.00 45.56 4.40
3769 4088 3.399440 AGCTCCTAGCATTGTAGATGC 57.601 47.619 2.90 2.90 45.56 3.91
3770 4089 5.847304 TGTAAGCTCCTAGCATTGTAGATG 58.153 41.667 1.22 0.00 45.56 2.90
3771 4090 6.678568 ATGTAAGCTCCTAGCATTGTAGAT 57.321 37.500 1.22 0.00 45.56 1.98
3772 4091 6.209589 CCTATGTAAGCTCCTAGCATTGTAGA 59.790 42.308 1.22 0.00 45.56 2.59
3773 4092 6.393990 CCTATGTAAGCTCCTAGCATTGTAG 58.606 44.000 1.22 0.00 45.56 2.74
3774 4093 5.279506 GCCTATGTAAGCTCCTAGCATTGTA 60.280 44.000 1.22 0.00 45.56 2.41
3775 4094 4.503991 GCCTATGTAAGCTCCTAGCATTGT 60.504 45.833 1.22 0.00 45.56 2.71
3776 4095 3.999663 GCCTATGTAAGCTCCTAGCATTG 59.000 47.826 1.22 0.00 45.56 2.82
3777 4096 3.306364 CGCCTATGTAAGCTCCTAGCATT 60.306 47.826 1.22 0.00 45.56 3.56
3778 4097 2.232452 CGCCTATGTAAGCTCCTAGCAT 59.768 50.000 1.22 0.00 45.56 3.79
3779 4098 1.613925 CGCCTATGTAAGCTCCTAGCA 59.386 52.381 1.22 0.00 45.56 3.49
3780 4099 1.670380 GCGCCTATGTAAGCTCCTAGC 60.670 57.143 0.00 0.00 42.84 3.42
3781 4100 1.889829 AGCGCCTATGTAAGCTCCTAG 59.110 52.381 2.29 0.00 34.48 3.02
3782 4101 1.996798 AGCGCCTATGTAAGCTCCTA 58.003 50.000 2.29 0.00 34.48 2.94
3783 4102 1.123928 AAGCGCCTATGTAAGCTCCT 58.876 50.000 2.29 0.00 39.25 3.69
3784 4103 2.814280 TAAGCGCCTATGTAAGCTCC 57.186 50.000 2.29 0.00 39.25 4.70
3785 4104 5.096849 GTCTATAAGCGCCTATGTAAGCTC 58.903 45.833 8.81 0.00 39.25 4.09
3786 4105 4.523173 TGTCTATAAGCGCCTATGTAAGCT 59.477 41.667 8.81 0.00 42.35 3.74
3787 4106 4.806330 TGTCTATAAGCGCCTATGTAAGC 58.194 43.478 8.81 0.00 0.00 3.09
3788 4107 7.709269 TTTTGTCTATAAGCGCCTATGTAAG 57.291 36.000 8.81 0.00 0.00 2.34
3789 4108 9.767228 TTATTTTGTCTATAAGCGCCTATGTAA 57.233 29.630 8.81 0.00 0.00 2.41
3790 4109 9.938280 ATTATTTTGTCTATAAGCGCCTATGTA 57.062 29.630 8.81 0.00 0.00 2.29
3791 4110 8.848474 ATTATTTTGTCTATAAGCGCCTATGT 57.152 30.769 8.81 0.00 0.00 2.29
3821 4140 9.476202 GCTTAGGTGTGTTTCAGATTTTTATTT 57.524 29.630 0.00 0.00 0.00 1.40
3822 4141 7.807907 CGCTTAGGTGTGTTTCAGATTTTTATT 59.192 33.333 0.00 0.00 0.00 1.40
3823 4142 7.305474 CGCTTAGGTGTGTTTCAGATTTTTAT 58.695 34.615 0.00 0.00 0.00 1.40
3824 4143 6.664515 CGCTTAGGTGTGTTTCAGATTTTTA 58.335 36.000 0.00 0.00 0.00 1.52
3825 4144 5.519722 CGCTTAGGTGTGTTTCAGATTTTT 58.480 37.500 0.00 0.00 0.00 1.94
3826 4145 4.556699 GCGCTTAGGTGTGTTTCAGATTTT 60.557 41.667 0.00 0.00 0.00 1.82
3827 4146 3.058224 GCGCTTAGGTGTGTTTCAGATTT 60.058 43.478 0.00 0.00 0.00 2.17
3828 4147 2.484264 GCGCTTAGGTGTGTTTCAGATT 59.516 45.455 0.00 0.00 0.00 2.40
3829 4148 2.076863 GCGCTTAGGTGTGTTTCAGAT 58.923 47.619 0.00 0.00 0.00 2.90
3830 4149 1.508632 GCGCTTAGGTGTGTTTCAGA 58.491 50.000 0.00 0.00 0.00 3.27
3831 4150 0.517316 GGCGCTTAGGTGTGTTTCAG 59.483 55.000 7.64 0.00 0.00 3.02
3832 4151 0.107831 AGGCGCTTAGGTGTGTTTCA 59.892 50.000 7.64 0.00 0.00 2.69
3833 4152 0.796927 GAGGCGCTTAGGTGTGTTTC 59.203 55.000 7.64 0.00 0.00 2.78
3834 4153 0.107831 TGAGGCGCTTAGGTGTGTTT 59.892 50.000 7.64 0.00 0.00 2.83
3835 4154 0.324943 ATGAGGCGCTTAGGTGTGTT 59.675 50.000 7.64 0.00 0.00 3.32
3836 4155 0.108138 GATGAGGCGCTTAGGTGTGT 60.108 55.000 7.64 0.00 0.00 3.72
3837 4156 0.811616 GGATGAGGCGCTTAGGTGTG 60.812 60.000 7.64 0.00 0.00 3.82
3838 4157 1.522569 GGATGAGGCGCTTAGGTGT 59.477 57.895 7.64 0.00 0.00 4.16
3839 4158 1.227674 GGGATGAGGCGCTTAGGTG 60.228 63.158 7.64 0.00 0.00 4.00
3840 4159 1.383248 AGGGATGAGGCGCTTAGGT 60.383 57.895 7.64 0.00 0.00 3.08
3841 4160 1.369321 GAGGGATGAGGCGCTTAGG 59.631 63.158 7.64 0.00 0.00 2.69
3842 4161 0.465705 TTGAGGGATGAGGCGCTTAG 59.534 55.000 7.64 0.00 0.00 2.18
3843 4162 0.178068 GTTGAGGGATGAGGCGCTTA 59.822 55.000 7.64 0.00 0.00 3.09
3844 4163 1.078143 GTTGAGGGATGAGGCGCTT 60.078 57.895 7.64 0.00 0.00 4.68
3845 4164 2.586792 GTTGAGGGATGAGGCGCT 59.413 61.111 7.64 0.00 0.00 5.92
3846 4165 2.892425 CGTTGAGGGATGAGGCGC 60.892 66.667 0.00 0.00 0.00 6.53
3847 4166 2.016393 TAGCGTTGAGGGATGAGGCG 62.016 60.000 0.00 0.00 0.00 5.52
3848 4167 0.249657 CTAGCGTTGAGGGATGAGGC 60.250 60.000 0.00 0.00 0.00 4.70
3849 4168 1.067821 GTCTAGCGTTGAGGGATGAGG 59.932 57.143 0.00 0.00 0.00 3.86
3850 4169 1.268794 CGTCTAGCGTTGAGGGATGAG 60.269 57.143 0.00 0.00 35.54 2.90
3851 4170 0.738975 CGTCTAGCGTTGAGGGATGA 59.261 55.000 0.00 0.00 35.54 2.92
3852 4171 0.872021 GCGTCTAGCGTTGAGGGATG 60.872 60.000 8.08 0.00 43.66 3.51
3853 4172 1.437986 GCGTCTAGCGTTGAGGGAT 59.562 57.895 8.08 0.00 43.66 3.85
3854 4173 2.882876 GCGTCTAGCGTTGAGGGA 59.117 61.111 8.08 0.00 43.66 4.20
3864 4183 8.100306 CACGTTGTTTAGTTAATTAGCGTCTAG 58.900 37.037 0.00 0.00 0.00 2.43
3865 4184 7.062138 CCACGTTGTTTAGTTAATTAGCGTCTA 59.938 37.037 0.00 0.00 0.00 2.59
3866 4185 6.128742 CCACGTTGTTTAGTTAATTAGCGTCT 60.129 38.462 0.00 0.00 0.00 4.18
3867 4186 6.011277 CCACGTTGTTTAGTTAATTAGCGTC 58.989 40.000 0.00 0.00 0.00 5.19
3868 4187 5.695816 TCCACGTTGTTTAGTTAATTAGCGT 59.304 36.000 0.00 0.00 0.00 5.07
3869 4188 6.011277 GTCCACGTTGTTTAGTTAATTAGCG 58.989 40.000 0.00 0.00 0.00 4.26
3870 4189 6.011277 CGTCCACGTTGTTTAGTTAATTAGC 58.989 40.000 0.00 0.00 34.11 3.09
3871 4190 6.011277 GCGTCCACGTTGTTTAGTTAATTAG 58.989 40.000 0.36 0.00 42.22 1.73
3883 4202 1.610522 AGTACTTAGCGTCCACGTTGT 59.389 47.619 0.36 0.00 42.22 3.32
3884 4203 1.983605 CAGTACTTAGCGTCCACGTTG 59.016 52.381 0.00 0.00 42.22 4.10
3886 4205 0.524862 CCAGTACTTAGCGTCCACGT 59.475 55.000 0.00 0.00 42.22 4.49
3887 4206 0.806868 TCCAGTACTTAGCGTCCACG 59.193 55.000 0.00 0.00 43.27 4.94
3888 4207 2.416972 CCTTCCAGTACTTAGCGTCCAC 60.417 54.545 0.00 0.00 0.00 4.02
3889 4208 1.822990 CCTTCCAGTACTTAGCGTCCA 59.177 52.381 0.00 0.00 0.00 4.02
3890 4209 2.097825 TCCTTCCAGTACTTAGCGTCC 58.902 52.381 0.00 0.00 0.00 4.79
3891 4210 3.863142 TTCCTTCCAGTACTTAGCGTC 57.137 47.619 0.00 0.00 0.00 5.19
3893 4212 5.063564 GTCATTTTCCTTCCAGTACTTAGCG 59.936 44.000 0.00 0.00 0.00 4.26
3894 4213 5.354513 GGTCATTTTCCTTCCAGTACTTAGC 59.645 44.000 0.00 0.00 0.00 3.09
3895 4214 6.472887 TGGTCATTTTCCTTCCAGTACTTAG 58.527 40.000 0.00 0.00 0.00 2.18
3898 4217 4.993705 TGGTCATTTTCCTTCCAGTACT 57.006 40.909 0.00 0.00 0.00 2.73
3899 4218 4.082733 GCTTGGTCATTTTCCTTCCAGTAC 60.083 45.833 0.00 0.00 0.00 2.73
3900 4219 4.079253 GCTTGGTCATTTTCCTTCCAGTA 58.921 43.478 0.00 0.00 0.00 2.74
3901 4220 2.893489 GCTTGGTCATTTTCCTTCCAGT 59.107 45.455 0.00 0.00 0.00 4.00
3902 4221 2.095059 CGCTTGGTCATTTTCCTTCCAG 60.095 50.000 0.00 0.00 0.00 3.86
3905 4224 1.402852 GGCGCTTGGTCATTTTCCTTC 60.403 52.381 7.64 0.00 0.00 3.46
3907 4226 1.586154 CGGCGCTTGGTCATTTTCCT 61.586 55.000 7.64 0.00 0.00 3.36
3908 4227 1.154035 CGGCGCTTGGTCATTTTCC 60.154 57.895 7.64 0.00 0.00 3.13
3909 4228 1.154035 CCGGCGCTTGGTCATTTTC 60.154 57.895 7.64 0.00 0.00 2.29
3911 4230 3.061848 CCCGGCGCTTGGTCATTT 61.062 61.111 7.64 0.00 0.00 2.32
3912 4231 4.344865 ACCCGGCGCTTGGTCATT 62.345 61.111 14.40 0.00 0.00 2.57
3923 4242 4.067913 CCAAACCATGCACCCGGC 62.068 66.667 0.00 0.00 45.13 6.13
3924 4243 4.067913 GCCAAACCATGCACCCGG 62.068 66.667 0.00 0.00 0.00 5.73
3925 4244 4.418401 CGCCAAACCATGCACCCG 62.418 66.667 0.00 0.00 0.00 5.28
3926 4245 3.281359 GACGCCAAACCATGCACCC 62.281 63.158 0.00 0.00 0.00 4.61
3928 4247 1.922135 ATCGACGCCAAACCATGCAC 61.922 55.000 0.00 0.00 0.00 4.57
3929 4248 1.673993 ATCGACGCCAAACCATGCA 60.674 52.632 0.00 0.00 0.00 3.96
3930 4249 1.226379 CATCGACGCCAAACCATGC 60.226 57.895 0.00 0.00 0.00 4.06
3931 4250 1.226379 GCATCGACGCCAAACCATG 60.226 57.895 0.00 0.00 0.00 3.66
3940 4259 3.499737 CAACCCTGGCATCGACGC 61.500 66.667 0.00 0.00 0.00 5.19
3941 4260 2.100631 GTCAACCCTGGCATCGACG 61.101 63.158 0.00 0.00 0.00 5.12
3942 4261 1.003839 TGTCAACCCTGGCATCGAC 60.004 57.895 0.00 0.00 30.26 4.20
3943 4262 1.003839 GTGTCAACCCTGGCATCGA 60.004 57.895 0.00 0.00 39.92 3.59
3944 4263 2.040544 GGTGTCAACCCTGGCATCG 61.041 63.158 0.00 0.00 39.92 3.84
3954 4273 2.433436 GGGTGTAATCCTGGTGTCAAC 58.567 52.381 0.00 0.00 0.00 3.18
3956 4275 0.611200 CGGGTGTAATCCTGGTGTCA 59.389 55.000 0.00 0.00 0.00 3.58
3957 4276 0.107848 CCGGGTGTAATCCTGGTGTC 60.108 60.000 0.00 0.00 46.12 3.67
3958 4277 1.988015 CCGGGTGTAATCCTGGTGT 59.012 57.895 0.00 0.00 46.12 4.16
3959 4278 4.954933 CCGGGTGTAATCCTGGTG 57.045 61.111 0.00 0.00 46.12 4.17
3962 4281 1.029947 GGTTGCCGGGTGTAATCCTG 61.030 60.000 2.18 0.00 0.00 3.86
3965 4284 3.493213 CGGTTGCCGGGTGTAATC 58.507 61.111 2.18 0.00 44.15 1.75
3976 4295 1.766143 CTCGGCAGATTAGCGGTTGC 61.766 60.000 0.00 0.00 43.24 4.17
3977 4296 0.179111 TCTCGGCAGATTAGCGGTTG 60.179 55.000 0.00 0.00 36.38 3.77
3978 4297 0.753262 ATCTCGGCAGATTAGCGGTT 59.247 50.000 0.00 0.00 35.67 4.44
3979 4298 0.753262 AATCTCGGCAGATTAGCGGT 59.247 50.000 9.48 0.00 45.99 5.68
3980 4299 2.724977 TAATCTCGGCAGATTAGCGG 57.275 50.000 12.41 0.00 45.99 5.52
3986 4305 3.244353 CCAGGTTCATAATCTCGGCAGAT 60.244 47.826 0.00 0.00 41.59 2.90
3987 4306 2.103094 CCAGGTTCATAATCTCGGCAGA 59.897 50.000 0.00 0.00 0.00 4.26
3988 4307 2.487934 CCAGGTTCATAATCTCGGCAG 58.512 52.381 0.00 0.00 0.00 4.85
3989 4308 1.475034 GCCAGGTTCATAATCTCGGCA 60.475 52.381 0.00 0.00 38.20 5.69
3990 4309 1.230324 GCCAGGTTCATAATCTCGGC 58.770 55.000 0.00 0.00 0.00 5.54
3991 4310 1.502231 CGCCAGGTTCATAATCTCGG 58.498 55.000 0.00 0.00 0.00 4.63
3992 4311 0.861837 GCGCCAGGTTCATAATCTCG 59.138 55.000 0.00 0.00 0.00 4.04
3993 4312 1.202698 AGGCGCCAGGTTCATAATCTC 60.203 52.381 31.54 0.00 0.00 2.75
3994 4313 0.839946 AGGCGCCAGGTTCATAATCT 59.160 50.000 31.54 0.00 0.00 2.40
3995 4314 0.947244 CAGGCGCCAGGTTCATAATC 59.053 55.000 31.54 0.00 0.00 1.75
3996 4315 0.466189 CCAGGCGCCAGGTTCATAAT 60.466 55.000 31.54 0.00 0.00 1.28
3997 4316 1.077787 CCAGGCGCCAGGTTCATAA 60.078 57.895 31.54 0.00 0.00 1.90
3998 4317 2.589540 CCAGGCGCCAGGTTCATA 59.410 61.111 31.54 0.00 0.00 2.15
4015 4334 1.139520 CATTGCTGGGCGTTTAGGC 59.860 57.895 0.00 0.00 45.91 3.93
4016 4335 0.679640 TCCATTGCTGGGCGTTTAGG 60.680 55.000 0.00 0.00 43.34 2.69
4017 4336 0.734889 CTCCATTGCTGGGCGTTTAG 59.265 55.000 0.00 0.00 43.34 1.85
4018 4337 0.326595 TCTCCATTGCTGGGCGTTTA 59.673 50.000 0.00 0.00 43.34 2.01
4019 4338 0.323725 ATCTCCATTGCTGGGCGTTT 60.324 50.000 0.00 0.00 43.34 3.60
4020 4339 1.033746 CATCTCCATTGCTGGGCGTT 61.034 55.000 0.00 0.00 43.34 4.84
4021 4340 1.452651 CATCTCCATTGCTGGGCGT 60.453 57.895 0.00 0.00 43.34 5.68
4022 4341 2.842256 GCATCTCCATTGCTGGGCG 61.842 63.158 0.00 0.00 43.34 6.13
4023 4342 2.496291 GGCATCTCCATTGCTGGGC 61.496 63.158 0.00 0.00 43.34 5.36
4024 4343 1.831286 GGGCATCTCCATTGCTGGG 60.831 63.158 0.00 0.00 43.34 4.45
4025 4344 0.475475 TAGGGCATCTCCATTGCTGG 59.525 55.000 0.00 0.00 44.64 4.85
4026 4345 2.228059 CTTAGGGCATCTCCATTGCTG 58.772 52.381 0.00 0.00 40.03 4.41
4027 4346 1.144503 CCTTAGGGCATCTCCATTGCT 59.855 52.381 0.00 0.00 40.03 3.91
4028 4347 1.613836 CCTTAGGGCATCTCCATTGC 58.386 55.000 0.00 0.00 39.41 3.56
4029 4348 2.283145 CCCTTAGGGCATCTCCATTG 57.717 55.000 3.52 0.00 35.35 2.82
4041 4360 1.559065 TTGGCCGAAGTCCCCTTAGG 61.559 60.000 0.00 0.00 43.99 2.69
4097 4416 4.570772 CGGAATGATGTTTATTGAGGTCGT 59.429 41.667 0.00 0.00 0.00 4.34
4115 4434 1.938585 TCCTCACTCCAAGTCGGAAT 58.061 50.000 0.00 0.00 45.75 3.01
4139 4459 1.375326 GAGCGTTCCCTGTTTCCCT 59.625 57.895 0.00 0.00 0.00 4.20
4140 4460 1.674651 GGAGCGTTCCCTGTTTCCC 60.675 63.158 7.13 0.00 37.53 3.97
4141 4461 0.611714 TAGGAGCGTTCCCTGTTTCC 59.388 55.000 15.45 0.00 45.24 3.13
4142 4462 2.007547 GCTAGGAGCGTTCCCTGTTTC 61.008 57.143 15.45 0.00 45.24 2.78
4265 4588 6.780522 AGGAAGAAGAAGACTTTGTACTCTCT 59.219 38.462 0.00 0.00 36.39 3.10
4396 4723 3.750130 GTGATATGCATGCAAGACCCTAG 59.250 47.826 26.68 0.00 0.00 3.02
4397 4724 3.496692 GGTGATATGCATGCAAGACCCTA 60.497 47.826 26.68 11.84 0.00 3.53
4398 4725 2.579873 GTGATATGCATGCAAGACCCT 58.420 47.619 26.68 9.68 0.00 4.34
4399 4726 1.610522 GGTGATATGCATGCAAGACCC 59.389 52.381 26.68 16.64 0.00 4.46
4400 4727 1.265095 CGGTGATATGCATGCAAGACC 59.735 52.381 26.68 23.62 0.00 3.85
4524 4895 1.739035 CGTTGCATAGGTGACGGATGT 60.739 52.381 0.00 0.00 32.86 3.06
4533 4904 2.100631 GTGCGCTCGTTGCATAGGT 61.101 57.895 9.73 0.00 45.34 3.08
4573 4944 3.425404 CTGGCCGTTGAATTATCAAACG 58.575 45.455 0.00 5.68 46.66 3.60
4635 5010 4.381932 GGTTGTTTCCATGGCCTTTATCTG 60.382 45.833 6.96 0.00 0.00 2.90
4636 5011 3.769300 GGTTGTTTCCATGGCCTTTATCT 59.231 43.478 6.96 0.00 0.00 1.98
4669 5044 6.545923 TCCTTTATGGTATTGCGATCGGCA 62.546 45.833 18.30 12.49 43.26 5.69
4670 5045 2.159627 CCTTTATGGTATTGCGATCGGC 59.840 50.000 18.30 9.85 43.96 5.54
4671 5046 3.432252 GTCCTTTATGGTATTGCGATCGG 59.568 47.826 18.30 0.00 37.07 4.18
4673 5048 3.751698 GGGTCCTTTATGGTATTGCGATC 59.248 47.826 0.00 0.00 37.07 3.69
4674 5049 3.137544 TGGGTCCTTTATGGTATTGCGAT 59.862 43.478 0.00 0.00 37.07 4.58
4675 5050 2.506231 TGGGTCCTTTATGGTATTGCGA 59.494 45.455 0.00 0.00 37.07 5.10
4676 5051 2.878406 CTGGGTCCTTTATGGTATTGCG 59.122 50.000 0.00 0.00 37.07 4.85
4677 5052 3.883489 GACTGGGTCCTTTATGGTATTGC 59.117 47.826 0.00 0.00 37.07 3.56
4678 5053 5.110814 TGACTGGGTCCTTTATGGTATTG 57.889 43.478 0.00 0.00 37.07 1.90
4679 5054 5.994416 ATGACTGGGTCCTTTATGGTATT 57.006 39.130 0.00 0.00 37.07 1.89
4680 5055 7.460214 TTTATGACTGGGTCCTTTATGGTAT 57.540 36.000 0.00 0.00 37.07 2.73
4681 5056 6.894735 TTTATGACTGGGTCCTTTATGGTA 57.105 37.500 0.00 0.00 37.07 3.25
4682 5057 5.789574 TTTATGACTGGGTCCTTTATGGT 57.210 39.130 0.00 0.00 37.07 3.55
4706 5081 6.084749 AGAGGCTAATCTCTGGGAATTTTT 57.915 37.500 0.00 0.00 42.05 1.94
4707 5082 5.723860 AGAGGCTAATCTCTGGGAATTTT 57.276 39.130 0.00 0.00 42.05 1.82
4708 5083 5.192522 TCAAGAGGCTAATCTCTGGGAATTT 59.807 40.000 0.00 0.00 42.75 1.82
4709 5084 4.723789 TCAAGAGGCTAATCTCTGGGAATT 59.276 41.667 0.00 0.00 42.75 2.17
4710 5085 4.302067 TCAAGAGGCTAATCTCTGGGAAT 58.698 43.478 0.00 0.00 42.75 3.01
4711 5086 3.724478 TCAAGAGGCTAATCTCTGGGAA 58.276 45.455 0.00 0.00 42.75 3.97
4712 5087 3.404869 TCAAGAGGCTAATCTCTGGGA 57.595 47.619 0.00 0.00 42.75 4.37
4713 5088 4.590647 TGTATCAAGAGGCTAATCTCTGGG 59.409 45.833 0.00 0.00 42.75 4.45
4714 5089 5.798125 TGTATCAAGAGGCTAATCTCTGG 57.202 43.478 0.00 0.00 42.75 3.86
4715 5090 8.498054 TTTTTGTATCAAGAGGCTAATCTCTG 57.502 34.615 0.00 0.00 42.75 3.35
4742 5118 8.937884 TGCGTGCTAAACTACAAAGAAAATATA 58.062 29.630 0.00 0.00 0.00 0.86
4818 5281 6.319152 TGGAAAACAAGAAGAAATACAACCGA 59.681 34.615 0.00 0.00 0.00 4.69
5093 5557 0.461548 GTGAGGAGCGGATGTCATGA 59.538 55.000 0.00 0.00 0.00 3.07
5138 5602 2.295602 GGCCTCTACCCGGGAAACA 61.296 63.158 32.02 8.17 0.00 2.83
5166 5632 3.028850 CGAGGTTATAGGTGAGGTTGGA 58.971 50.000 0.00 0.00 0.00 3.53
5213 5679 1.207329 GATGCGGACTAACCCAAGAGT 59.793 52.381 0.00 0.00 34.64 3.24
5271 5823 9.197694 GTACGGATAGATCTACTAAAACGTAGA 57.802 37.037 4.10 3.46 46.96 2.59
5276 5828 7.594386 GCCAAGTACGGATAGATCTACTAAAAC 59.406 40.741 4.10 1.76 34.56 2.43
5404 5964 7.870954 CGATACCTTAAATGTATAACAGCTGGA 59.129 37.037 19.93 5.78 0.00 3.86
5541 6133 3.428746 ACGAGCTGCTAACATAGTGAG 57.571 47.619 0.15 0.00 0.00 3.51
5580 6172 7.068593 TCCCCAACAGCAAAATAGATAGAAATG 59.931 37.037 0.00 0.00 0.00 2.32
5640 6260 0.665068 TTATGCACTCGAACACGCGT 60.665 50.000 5.58 5.58 0.00 6.01
5719 6391 4.063689 GGATGATGAGTCAACATAGGCTG 58.936 47.826 15.15 0.00 38.01 4.85
5723 6395 7.563888 AAACATGGATGATGAGTCAACATAG 57.436 36.000 15.15 8.80 38.01 2.23
5881 6581 0.876777 TTGACATGCCGACGACGTTT 60.877 50.000 0.13 0.00 37.88 3.60
5968 6668 5.527951 AGAATTTGTTTGATACGCTTGCAA 58.472 33.333 0.00 0.00 0.00 4.08
5989 6689 1.334160 TGCCGAGTAGGTTGTCAAGA 58.666 50.000 0.00 0.00 43.70 3.02
6205 6905 7.499895 ACCTCAAAGTAAAACTCAACCGAATTA 59.500 33.333 0.00 0.00 0.00 1.40
6295 6995 0.967380 CACCATGCCCTTCCTTCACC 60.967 60.000 0.00 0.00 0.00 4.02
6328 7028 3.323751 AAGGATTGCACAATTCCAAGC 57.676 42.857 11.74 0.00 0.00 4.01
6405 7106 6.340537 ACGAAATACATTTACGGCTAGTTG 57.659 37.500 0.00 0.00 0.00 3.16
6514 7562 1.078823 TCTCCTGGCTCCTTGTCCTTA 59.921 52.381 0.00 0.00 0.00 2.69
6867 7915 0.456312 GAAGCACCTGTCCGTCGTAG 60.456 60.000 0.00 0.00 0.00 3.51
6979 8027 3.733960 CCGCCAGAGACGTCGACA 61.734 66.667 17.16 0.00 0.00 4.35
7075 8123 2.663196 GGGGTCTTGAGGTCCGTG 59.337 66.667 0.00 0.00 0.00 4.94
7318 8367 2.672478 CGTGATTTCAGAAGACGCCTCT 60.672 50.000 0.00 0.00 0.00 3.69
7345 8454 2.755876 ATCTCAGACGCCTCCGCA 60.756 61.111 0.00 0.00 38.22 5.69
7493 8602 1.303091 ACCGTTGCTCCGTAATTGGC 61.303 55.000 0.00 0.00 0.00 4.52
7662 8774 1.518572 GCTGATGTGCTTGGCATGC 60.519 57.895 17.62 17.62 41.91 4.06
7664 8776 2.056223 GGGCTGATGTGCTTGGCAT 61.056 57.895 0.00 0.00 41.91 4.40
7690 8803 8.610896 GTCAGATTAAATCATCTTCAGGAACAG 58.389 37.037 0.00 0.00 30.50 3.16
7849 8963 3.999705 CTCCTGCAGCCCCTCCTCT 63.000 68.421 8.66 0.00 0.00 3.69
7994 9117 2.111756 GATTTTTGATCATGCGACGGC 58.888 47.619 0.00 0.00 40.52 5.68
8256 9382 8.470002 AGCTCTAAAAACACAAACTCTGAAAAT 58.530 29.630 0.00 0.00 0.00 1.82
8257 9383 7.826690 AGCTCTAAAAACACAAACTCTGAAAA 58.173 30.769 0.00 0.00 0.00 2.29
8260 9386 6.349300 AGAGCTCTAAAAACACAAACTCTGA 58.651 36.000 16.50 0.00 31.11 3.27
8325 9644 3.891366 GGCAGTGGAAGCAAATATATGGT 59.109 43.478 0.00 0.00 0.00 3.55
8343 9662 2.089980 CTTTCTCCTGTGAATGGGCAG 58.910 52.381 0.00 0.00 0.00 4.85
8353 9672 6.271159 AGGAATCTGTACTTTCTTTCTCCTGT 59.729 38.462 0.00 0.00 0.00 4.00
8456 9779 4.037446 CAGACCTAGAGGAGATTGTACAGC 59.963 50.000 1.60 0.00 38.94 4.40
8508 9831 2.411904 GTGCCTGCATATGAGAGCTAC 58.588 52.381 6.97 3.23 0.00 3.58
8591 9914 4.156477 TGAACCCCTTTTCCGATTTCAAT 58.844 39.130 0.00 0.00 0.00 2.57
8737 10094 4.036734 TGCAACTTTGATGGTCTTCTCAAC 59.963 41.667 0.00 0.00 31.41 3.18
8821 10178 1.152589 TGGTGCCATTGTGCCTGAA 60.153 52.632 0.00 0.00 0.00 3.02
8957 10317 2.938956 ATAATTCTGCCCCTTCCTCG 57.061 50.000 0.00 0.00 0.00 4.63
9051 10411 7.813087 AAGGGGATATTTTTGGAAAGAATGT 57.187 32.000 0.00 0.00 0.00 2.71
9062 10422 6.271537 AGATGGACCAAAAGGGGATATTTTT 58.728 36.000 0.00 0.00 42.91 1.94
9125 10485 1.153901 CGTTCGATGGTACTGGCGT 60.154 57.895 0.00 0.00 0.00 5.68
9165 10525 5.534654 CCAATCAGTGAAGGGTTTTCTGTTA 59.465 40.000 0.00 0.00 0.00 2.41
9178 10538 3.141398 GTGTGCTCTTCCAATCAGTGAA 58.859 45.455 0.00 0.00 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.