Multiple sequence alignment - TraesCS7D01G147900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G147900 chr7D 100.000 6021 0 0 1 6021 94512230 94506210 0.000000e+00 11119.0
1 TraesCS7D01G147900 chr7D 84.716 229 27 6 5797 6021 94940567 94940343 7.850000e-54 222.0
2 TraesCS7D01G147900 chr7B 91.285 2972 193 28 2608 5541 48772516 48769573 0.000000e+00 3993.0
3 TraesCS7D01G147900 chr7B 88.038 1371 116 22 1 1350 48780988 48779645 0.000000e+00 1580.0
4 TraesCS7D01G147900 chr7B 90.372 457 22 8 5578 6021 48769571 48769124 1.120000e-161 580.0
5 TraesCS7D01G147900 chr7B 81.786 280 29 10 1827 2087 48779304 48779028 1.310000e-51 215.0
6 TraesCS7D01G147900 chr7B 78.243 239 34 10 5797 6021 49035472 49035238 2.930000e-28 137.0
7 TraesCS7D01G147900 chr7A 96.974 1388 39 3 2625 4010 97911077 97909691 0.000000e+00 2327.0
8 TraesCS7D01G147900 chr7A 83.636 825 64 38 740 1529 97913694 97912906 0.000000e+00 710.0
9 TraesCS7D01G147900 chr7A 89.852 473 33 5 1566 2024 97912907 97912436 1.440000e-165 593.0
10 TraesCS7D01G147900 chr7A 88.300 453 33 7 1 447 97914123 97913685 5.350000e-145 525.0
11 TraesCS7D01G147900 chr7A 89.937 318 20 7 2009 2315 97912414 97912098 3.380000e-107 399.0
12 TraesCS7D01G147900 chr7A 84.211 361 16 6 2308 2628 97911723 97911364 4.530000e-81 313.0
13 TraesCS7D01G147900 chr7A 83.333 228 31 5 5797 6021 98549554 98549331 2.850000e-48 204.0
14 TraesCS7D01G147900 chr7A 79.452 292 48 8 450 732 126757301 126757013 4.760000e-46 196.0
15 TraesCS7D01G147900 chr4B 80.556 288 44 10 450 732 101300902 101301182 1.700000e-50 211.0
16 TraesCS7D01G147900 chr4B 82.439 205 27 6 1 196 282886550 282886346 2.890000e-38 171.0
17 TraesCS7D01G147900 chr3B 80.139 287 47 8 450 731 605272935 605273216 7.910000e-49 206.0
18 TraesCS7D01G147900 chr5A 79.932 294 45 11 450 732 281144061 281143771 2.850000e-48 204.0
19 TraesCS7D01G147900 chr5A 79.592 294 45 11 450 732 280979972 280979683 4.760000e-46 196.0
20 TraesCS7D01G147900 chr2B 80.142 282 42 9 462 732 212184718 212184440 1.320000e-46 198.0
21 TraesCS7D01G147900 chr2B 79.859 283 44 9 450 726 142894643 142894368 1.710000e-45 195.0
22 TraesCS7D01G147900 chr2B 88.889 90 10 0 1718 1807 361575962 361575873 1.770000e-20 111.0
23 TraesCS7D01G147900 chr4D 83.902 205 24 6 1 196 211388217 211388013 2.870000e-43 187.0
24 TraesCS7D01G147900 chr4D 91.667 60 5 0 1715 1774 323099509 323099568 3.870000e-12 84.2
25 TraesCS7D01G147900 chr2A 77.987 318 55 12 428 732 780721077 780720762 1.030000e-42 185.0
26 TraesCS7D01G147900 chr2A 89.655 87 9 0 1718 1804 428122245 428122331 1.770000e-20 111.0
27 TraesCS7D01G147900 chr5D 83.249 197 25 5 1 189 114976478 114976674 2.230000e-39 174.0
28 TraesCS7D01G147900 chr3A 86.335 161 17 4 37 194 77890878 77891036 2.890000e-38 171.0
29 TraesCS7D01G147900 chr4A 85.714 161 15 5 10 162 96542538 96542698 4.830000e-36 163.0
30 TraesCS7D01G147900 chr4A 81.095 201 18 14 2 192 273738477 273738667 6.290000e-30 143.0
31 TraesCS7D01G147900 chr4A 100.000 29 0 0 5629 5657 618116584 618116556 3.000000e-03 54.7
32 TraesCS7D01G147900 chr6D 81.095 201 28 9 1 196 6312639 6312444 1.050000e-32 152.0
33 TraesCS7D01G147900 chr6D 90.278 72 7 0 1735 1806 112434739 112434668 1.790000e-15 95.3
34 TraesCS7D01G147900 chr1D 89.623 106 5 4 1717 1817 41825985 41825881 4.900000e-26 130.0
35 TraesCS7D01G147900 chr2D 90.805 87 8 0 1718 1804 311551653 311551739 3.810000e-22 117.0
36 TraesCS7D01G147900 chr3D 87.805 82 10 0 1718 1799 373773087 373773006 4.970000e-16 97.1
37 TraesCS7D01G147900 chr1B 82.796 93 12 3 1715 1803 308289014 308289106 5.000000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G147900 chr7D 94506210 94512230 6020 True 11119.000000 11119 100.000000 1 6021 1 chr7D.!!$R1 6020
1 TraesCS7D01G147900 chr7B 48769124 48772516 3392 True 2286.500000 3993 90.828500 2608 6021 2 chr7B.!!$R2 3413
2 TraesCS7D01G147900 chr7B 48779028 48780988 1960 True 897.500000 1580 84.912000 1 2087 2 chr7B.!!$R3 2086
3 TraesCS7D01G147900 chr7A 97909691 97914123 4432 True 811.166667 2327 88.818333 1 4010 6 chr7A.!!$R3 4009

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
532 545 0.037326 ACGCGCACCATATCCCTATG 60.037 55.0 5.73 0.0 35.47 2.23 F
645 658 0.160182 AACACGCGTCGTCGAAAATC 59.840 50.0 9.86 0.0 38.32 2.17 F
1729 1949 0.395311 TGCGATCTACTCCCTCCGTT 60.395 55.0 0.00 0.0 0.00 4.44 F
2261 2548 1.847818 TCGGTCTTGTTCTTCGTGTG 58.152 50.0 0.00 0.0 0.00 3.82 F
3095 4100 0.249447 AAGCAACGAAAGGGCAAAGC 60.249 50.0 0.00 0.0 37.88 3.51 F
3606 4611 0.537143 AGGTTGCTTTGCATGGACGA 60.537 50.0 0.00 0.0 38.76 4.20 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1711 1931 0.311477 GAACGGAGGGAGTAGATCGC 59.689 60.0 0.0 0.0 41.11 4.58 R
1969 2190 0.469917 ATCGGAGGAATTGCCATCGT 59.530 50.0 0.0 0.0 40.02 3.73 R
3095 4100 2.455674 TGATTGTTCACTGGTCTCCG 57.544 50.0 0.0 0.0 0.00 4.63 R
4105 5111 0.038890 TCATGAAATTCCGGGGTGCA 59.961 50.0 0.0 0.0 0.00 4.57 R
4297 5303 0.179048 TATGGGCTTCATCCACTGCG 60.179 55.0 0.0 0.0 37.08 5.18 R
5572 6610 0.099613 CGACCACATCCGTGAGAGAG 59.900 60.0 0.0 0.0 46.80 3.20 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
172 179 5.709631 TCATTAACCAATTCTTGTAGCAGCA 59.290 36.000 0.00 0.00 0.00 4.41
229 236 6.475727 TCGCAACTTACTGATATTCAACTAGC 59.524 38.462 0.00 0.00 0.00 3.42
399 406 2.100749 CCACCTTTTGTGTGTTTCTCCC 59.899 50.000 0.00 0.00 43.85 4.30
404 411 5.301805 ACCTTTTGTGTGTTTCTCCCTAATG 59.698 40.000 0.00 0.00 0.00 1.90
429 436 1.001406 CAGAAAGTTCCACCGAGCTCT 59.999 52.381 12.85 0.00 0.00 4.09
478 485 4.352600 AGTACACAGTACAGACGTATGC 57.647 45.455 10.69 0.00 0.00 3.14
479 486 3.754850 AGTACACAGTACAGACGTATGCA 59.245 43.478 10.69 0.00 0.00 3.96
482 489 3.172050 CACAGTACAGACGTATGCACTC 58.828 50.000 13.03 0.32 0.00 3.51
490 497 9.397280 AGTACAGACGTATGCACTCATATATAT 57.603 33.333 10.24 0.00 37.49 0.86
491 498 9.439537 GTACAGACGTATGCACTCATATATATG 57.560 37.037 15.47 15.47 37.49 1.78
507 514 1.552578 TATGCACGTACACTCACCCT 58.447 50.000 0.00 0.00 0.00 4.34
510 517 1.000060 TGCACGTACACTCACCCTTAC 60.000 52.381 0.00 0.00 0.00 2.34
512 519 1.609208 ACGTACACTCACCCTTACGT 58.391 50.000 0.00 0.00 44.21 3.57
515 522 2.474526 CGTACACTCACCCTTACGTACG 60.475 54.545 15.01 15.01 43.94 3.67
517 524 0.795735 CACTCACCCTTACGTACGCG 60.796 60.000 16.72 3.53 44.93 6.01
526 539 1.712350 CTTACGTACGCGCACCATATC 59.288 52.381 16.72 0.00 42.83 1.63
527 540 0.040157 TACGTACGCGCACCATATCC 60.040 55.000 16.72 0.00 42.83 2.59
532 545 0.037326 ACGCGCACCATATCCCTATG 60.037 55.000 5.73 0.00 35.47 2.23
540 553 3.328931 CACCATATCCCTATGAGCACCTT 59.671 47.826 0.00 0.00 37.51 3.50
545 558 1.063942 TCCCTATGAGCACCTTCGAGA 60.064 52.381 0.00 0.00 0.00 4.04
557 570 2.606155 CTTCGAGAGACTGAGCCGGC 62.606 65.000 21.89 21.89 41.84 6.13
577 590 5.062683 CCGGCATATCATCTTTAGATTGACG 59.937 44.000 9.40 9.40 36.11 4.35
581 594 7.386299 GGCATATCATCTTTAGATTGACGAAGT 59.614 37.037 0.00 0.00 36.31 3.01
594 607 2.288961 ACGAAGTCAACACAGACGTT 57.711 45.000 0.00 0.00 43.24 3.99
597 610 2.601314 CGAAGTCAACACAGACGTTTCA 59.399 45.455 0.00 0.00 43.24 2.69
603 616 4.743151 GTCAACACAGACGTTTCATAGTCA 59.257 41.667 0.00 0.00 39.67 3.41
619 632 3.771577 AGTCAACGGAAACATCTCCTT 57.228 42.857 0.00 0.00 32.82 3.36
633 646 0.508641 CTCCTTTCACTGAACACGCG 59.491 55.000 3.53 3.53 0.00 6.01
637 650 0.802994 TTTCACTGAACACGCGTCGT 60.803 50.000 9.86 8.84 42.36 4.34
645 658 0.160182 AACACGCGTCGTCGAAAATC 59.840 50.000 9.86 0.00 38.32 2.17
646 659 1.056750 CACGCGTCGTCGAAAATCC 59.943 57.895 9.86 0.00 38.32 3.01
648 661 1.340465 CGCGTCGTCGAAAATCCTG 59.660 57.895 6.17 0.00 39.71 3.86
657 670 6.959311 CGTCGTCGAAAATCCTGAAATAAATT 59.041 34.615 0.00 0.00 39.71 1.82
681 694 7.581213 TCAAAATAAATGCGAATACAGGGAT 57.419 32.000 0.00 0.00 0.00 3.85
687 700 6.469782 AAATGCGAATACAGGGATTTGAAT 57.530 33.333 0.00 0.00 33.70 2.57
688 701 6.469782 AATGCGAATACAGGGATTTGAATT 57.530 33.333 0.00 0.00 0.00 2.17
691 704 5.066375 TGCGAATACAGGGATTTGAATTCTG 59.934 40.000 7.05 0.00 0.00 3.02
694 707 7.173218 GCGAATACAGGGATTTGAATTCTGATA 59.827 37.037 7.05 0.00 0.00 2.15
696 709 8.930846 AATACAGGGATTTGAATTCTGATAGG 57.069 34.615 7.05 0.00 0.00 2.57
700 713 4.522022 GGGATTTGAATTCTGATAGGCTGG 59.478 45.833 7.05 0.00 0.00 4.85
701 714 5.380043 GGATTTGAATTCTGATAGGCTGGA 58.620 41.667 7.05 0.00 0.00 3.86
709 722 4.689612 TCTGATAGGCTGGAAATACCAC 57.310 45.455 0.00 0.00 44.64 4.16
718 731 3.307762 GCTGGAAATACCACTGTCCTTCT 60.308 47.826 0.00 0.00 44.64 2.85
752 772 4.142315 CCAATATGCAGGACTTGGTCTTTG 60.142 45.833 9.88 0.00 34.69 2.77
811 833 2.742372 CAAGACGACTTGGCGGGG 60.742 66.667 18.15 0.00 46.67 5.73
893 915 3.002404 GCGCTTGCGCCAATTTGTG 62.002 57.895 26.79 0.00 0.00 3.33
934 960 4.522297 GCTACGTGCATAGAGAAAAAGG 57.478 45.455 0.00 0.00 42.31 3.11
935 961 4.181578 GCTACGTGCATAGAGAAAAAGGA 58.818 43.478 0.00 0.00 42.31 3.36
936 962 4.268884 GCTACGTGCATAGAGAAAAAGGAG 59.731 45.833 0.00 0.00 42.31 3.69
937 963 3.003480 ACGTGCATAGAGAAAAAGGAGC 58.997 45.455 0.00 0.00 0.00 4.70
1021 1063 4.142138 GGATGGACACTAGTACCAGAAGTG 60.142 50.000 20.46 11.58 44.89 3.16
1114 1159 1.882912 CTGCATGCCGTGGTATGTAT 58.117 50.000 16.68 0.00 39.77 2.29
1138 1183 8.926092 ATTCTGTAGCTTAACTTCTTCCTTTT 57.074 30.769 0.00 0.00 0.00 2.27
1139 1184 7.964604 TCTGTAGCTTAACTTCTTCCTTTTC 57.035 36.000 0.00 0.00 0.00 2.29
1142 1187 8.747538 TGTAGCTTAACTTCTTCCTTTTCTTT 57.252 30.769 0.00 0.00 0.00 2.52
1143 1188 8.837389 TGTAGCTTAACTTCTTCCTTTTCTTTC 58.163 33.333 0.00 0.00 0.00 2.62
1144 1189 9.058174 GTAGCTTAACTTCTTCCTTTTCTTTCT 57.942 33.333 0.00 0.00 0.00 2.52
1145 1190 8.160521 AGCTTAACTTCTTCCTTTTCTTTCTC 57.839 34.615 0.00 0.00 0.00 2.87
1146 1191 7.996066 AGCTTAACTTCTTCCTTTTCTTTCTCT 59.004 33.333 0.00 0.00 0.00 3.10
1147 1192 8.625651 GCTTAACTTCTTCCTTTTCTTTCTCTT 58.374 33.333 0.00 0.00 0.00 2.85
1148 1193 9.943163 CTTAACTTCTTCCTTTTCTTTCTCTTG 57.057 33.333 0.00 0.00 0.00 3.02
1149 1194 6.951062 ACTTCTTCCTTTTCTTTCTCTTGG 57.049 37.500 0.00 0.00 0.00 3.61
1225 1270 2.032681 GTGGGCTCCGCTTGACTT 59.967 61.111 0.00 0.00 0.00 3.01
1227 1272 2.347490 GGGCTCCGCTTGACTTCA 59.653 61.111 0.00 0.00 0.00 3.02
1350 1395 6.387041 TTCGAGAGTTCTTTTCTGTGAGTA 57.613 37.500 0.00 0.00 0.00 2.59
1351 1396 6.576662 TCGAGAGTTCTTTTCTGTGAGTAT 57.423 37.500 0.00 0.00 0.00 2.12
1359 1414 7.175641 AGTTCTTTTCTGTGAGTATTGGATTGG 59.824 37.037 0.00 0.00 0.00 3.16
1400 1455 3.119602 TCGAAAGGAGTAGTGATTCGGTG 60.120 47.826 6.40 0.00 42.16 4.94
1401 1456 3.522553 GAAAGGAGTAGTGATTCGGTGG 58.477 50.000 0.00 0.00 0.00 4.61
1436 1653 9.846248 CATAGAAAAGTTTCCATTGACCTTTAG 57.154 33.333 0.13 0.00 37.92 1.85
1446 1663 3.586470 TTGACCTTTAGTTTGCAGGGA 57.414 42.857 0.00 0.00 31.19 4.20
1523 1742 5.745294 TGTAACACACGTCAGTCTTCTTTAC 59.255 40.000 0.00 0.00 0.00 2.01
1524 1743 4.380841 ACACACGTCAGTCTTCTTTACA 57.619 40.909 0.00 0.00 0.00 2.41
1525 1744 4.360563 ACACACGTCAGTCTTCTTTACAG 58.639 43.478 0.00 0.00 0.00 2.74
1526 1745 4.097437 ACACACGTCAGTCTTCTTTACAGA 59.903 41.667 0.00 0.00 0.00 3.41
1527 1746 5.041287 CACACGTCAGTCTTCTTTACAGAA 58.959 41.667 0.00 0.00 36.62 3.02
1528 1747 5.518847 CACACGTCAGTCTTCTTTACAGAAA 59.481 40.000 0.00 0.00 38.63 2.52
1529 1748 5.749109 ACACGTCAGTCTTCTTTACAGAAAG 59.251 40.000 0.00 0.00 43.05 2.62
1530 1749 5.175856 CACGTCAGTCTTCTTTACAGAAAGG 59.824 44.000 0.00 0.00 42.13 3.11
1531 1750 5.068723 ACGTCAGTCTTCTTTACAGAAAGGA 59.931 40.000 0.00 0.00 42.13 3.36
1532 1751 5.631512 CGTCAGTCTTCTTTACAGAAAGGAG 59.368 44.000 0.01 0.01 46.22 3.69
1533 1752 5.407084 GTCAGTCTTCTTTACAGAAAGGAGC 59.593 44.000 1.45 0.00 44.97 4.70
1534 1753 5.305644 TCAGTCTTCTTTACAGAAAGGAGCT 59.694 40.000 1.45 0.00 44.97 4.09
1535 1754 5.407995 CAGTCTTCTTTACAGAAAGGAGCTG 59.592 44.000 0.00 11.98 44.97 4.24
1536 1755 5.071115 AGTCTTCTTTACAGAAAGGAGCTGT 59.929 40.000 0.00 0.00 44.97 4.40
1537 1756 5.760743 GTCTTCTTTACAGAAAGGAGCTGTT 59.239 40.000 0.00 0.00 44.97 3.16
1538 1757 6.261158 GTCTTCTTTACAGAAAGGAGCTGTTT 59.739 38.462 0.00 0.00 44.97 2.83
1539 1758 6.828785 TCTTCTTTACAGAAAGGAGCTGTTTT 59.171 34.615 0.00 0.00 44.97 2.43
1540 1759 7.990886 TCTTCTTTACAGAAAGGAGCTGTTTTA 59.009 33.333 0.00 0.00 44.97 1.52
1541 1760 7.492352 TCTTTACAGAAAGGAGCTGTTTTAC 57.508 36.000 0.00 0.00 43.67 2.01
1542 1761 5.917541 TTACAGAAAGGAGCTGTTTTACG 57.082 39.130 0.00 0.00 43.67 3.18
1543 1762 3.139077 ACAGAAAGGAGCTGTTTTACGG 58.861 45.455 0.00 0.00 43.67 4.02
1544 1763 3.139077 CAGAAAGGAGCTGTTTTACGGT 58.861 45.455 0.00 0.00 0.00 4.83
1545 1764 3.058914 CAGAAAGGAGCTGTTTTACGGTG 60.059 47.826 0.00 0.00 0.00 4.94
1546 1765 2.922740 AAGGAGCTGTTTTACGGTGA 57.077 45.000 0.00 0.00 0.00 4.02
1547 1766 3.418684 AAGGAGCTGTTTTACGGTGAT 57.581 42.857 0.00 0.00 0.00 3.06
1548 1767 3.418684 AGGAGCTGTTTTACGGTGATT 57.581 42.857 0.00 0.00 0.00 2.57
1549 1768 3.335579 AGGAGCTGTTTTACGGTGATTC 58.664 45.455 0.00 0.00 0.00 2.52
1550 1769 3.008049 AGGAGCTGTTTTACGGTGATTCT 59.992 43.478 0.00 0.00 0.00 2.40
1551 1770 3.751698 GGAGCTGTTTTACGGTGATTCTT 59.248 43.478 0.00 0.00 0.00 2.52
1552 1771 4.142881 GGAGCTGTTTTACGGTGATTCTTC 60.143 45.833 0.00 0.00 0.00 2.87
1553 1772 4.642429 AGCTGTTTTACGGTGATTCTTCT 58.358 39.130 0.00 0.00 0.00 2.85
1554 1773 4.452455 AGCTGTTTTACGGTGATTCTTCTG 59.548 41.667 0.00 0.00 0.00 3.02
1555 1774 4.213482 GCTGTTTTACGGTGATTCTTCTGT 59.787 41.667 0.00 0.00 0.00 3.41
1556 1775 5.666969 TGTTTTACGGTGATTCTTCTGTG 57.333 39.130 0.00 0.00 0.00 3.66
1557 1776 5.361427 TGTTTTACGGTGATTCTTCTGTGA 58.639 37.500 0.00 0.00 0.00 3.58
1558 1777 5.995282 TGTTTTACGGTGATTCTTCTGTGAT 59.005 36.000 0.00 0.00 0.00 3.06
1559 1778 6.073276 TGTTTTACGGTGATTCTTCTGTGATG 60.073 38.462 0.00 0.00 0.00 3.07
1560 1779 2.350522 ACGGTGATTCTTCTGTGATGC 58.649 47.619 0.00 0.00 0.00 3.91
1561 1780 2.289631 ACGGTGATTCTTCTGTGATGCA 60.290 45.455 0.00 0.00 0.00 3.96
1564 1783 3.427233 GGTGATTCTTCTGTGATGCAAGC 60.427 47.826 0.00 0.00 0.00 4.01
1573 1792 3.570975 TCTGTGATGCAAGCAAACAATCT 59.429 39.130 12.88 0.00 28.10 2.40
1576 1795 4.761227 TGTGATGCAAGCAAACAATCTCTA 59.239 37.500 10.37 0.00 28.10 2.43
1592 1811 6.995091 ACAATCTCTACTTCATATTTGAGGGC 59.005 38.462 0.67 0.00 33.43 5.19
1609 1829 2.700371 AGGGCCTTTTTGGTTCAGAAAG 59.300 45.455 0.00 4.55 35.98 2.62
1644 1864 4.846168 AGTTTGGAGGGTTCTATTCCTC 57.154 45.455 0.00 0.00 46.57 3.71
1674 1894 8.922058 AATTTTCTCACATATGATGCTTGTTC 57.078 30.769 10.38 0.00 33.22 3.18
1693 1913 6.438259 TGTTCGTGTTTGTAGGATTGAAAA 57.562 33.333 0.00 0.00 0.00 2.29
1694 1914 7.033530 TGTTCGTGTTTGTAGGATTGAAAAT 57.966 32.000 0.00 0.00 0.00 1.82
1711 1931 9.525409 GATTGAAAATCATATGGTTTTCTCCTG 57.475 33.333 36.32 1.10 42.15 3.86
1712 1932 6.866480 TGAAAATCATATGGTTTTCTCCTGC 58.134 36.000 36.32 21.09 42.15 4.85
1729 1949 0.395311 TGCGATCTACTCCCTCCGTT 60.395 55.000 0.00 0.00 0.00 4.44
1746 1966 6.086222 CCTCCGTTCAAAAATACTTGTCATG 58.914 40.000 0.00 0.00 0.00 3.07
1765 1986 8.870160 TGTCATGGTTTTAGTTCAAAATTGAG 57.130 30.769 0.00 0.00 38.36 3.02
1778 1999 6.325919 TCAAAATTGAGCTAAAACCACGAT 57.674 33.333 0.00 0.00 32.50 3.73
1789 2010 7.758495 AGCTAAAACCACGATAAGTATTTTGG 58.242 34.615 0.00 0.00 34.30 3.28
1799 2020 2.801077 AGTATTTTGGAACGGAGGGG 57.199 50.000 0.00 0.00 0.00 4.79
1814 2035 2.421529 GGAGGGGGTACTTTATGTGCAG 60.422 54.545 0.00 0.00 32.71 4.41
1824 2045 4.718961 ACTTTATGTGCAGTTTCAGAGGT 58.281 39.130 0.00 0.00 0.00 3.85
1961 2182 6.489127 TTCTATTACACATTTCCGTGGTTG 57.511 37.500 0.00 0.00 41.38 3.77
1962 2183 5.553123 TCTATTACACATTTCCGTGGTTGT 58.447 37.500 0.00 0.00 41.38 3.32
1964 2185 5.873179 ATTACACATTTCCGTGGTTGTAG 57.127 39.130 0.00 0.00 41.38 2.74
1966 2187 3.135994 ACACATTTCCGTGGTTGTAGTC 58.864 45.455 0.00 0.00 41.38 2.59
1967 2188 3.135225 CACATTTCCGTGGTTGTAGTCA 58.865 45.455 0.00 0.00 33.05 3.41
1969 2190 4.035792 CACATTTCCGTGGTTGTAGTCAAA 59.964 41.667 0.00 0.00 35.20 2.69
1970 2191 4.035909 ACATTTCCGTGGTTGTAGTCAAAC 59.964 41.667 0.00 0.00 41.22 2.93
1971 2192 1.855513 TCCGTGGTTGTAGTCAAACG 58.144 50.000 0.00 0.00 43.50 3.60
2001 2241 4.067972 TCCTCCGATTTTCCTATTTCCG 57.932 45.455 0.00 0.00 0.00 4.30
2068 2345 6.976088 TGGATTTTGAAAGCATAAGAAACGA 58.024 32.000 0.00 0.00 0.00 3.85
2089 2366 7.575332 ACGAAAACAAACACATTAATATGGC 57.425 32.000 0.00 0.00 36.01 4.40
2117 2398 8.947055 AAATGTGCAAAAAGAAGACTACAAAT 57.053 26.923 0.00 0.00 0.00 2.32
2118 2399 7.935338 ATGTGCAAAAAGAAGACTACAAATG 57.065 32.000 0.00 0.00 0.00 2.32
2215 2498 8.807118 TCAAACTACTTGATAGAAGTCATCAGT 58.193 33.333 0.00 0.00 39.20 3.41
2243 2530 7.702348 GGATGTTGTTATGCCACTAAAGAATTC 59.298 37.037 0.00 0.00 0.00 2.17
2249 2536 4.015872 TGCCACTAAAGAATTCGGTCTT 57.984 40.909 0.00 0.00 39.60 3.01
2260 2547 2.589798 TTCGGTCTTGTTCTTCGTGT 57.410 45.000 0.00 0.00 0.00 4.49
2261 2548 1.847818 TCGGTCTTGTTCTTCGTGTG 58.152 50.000 0.00 0.00 0.00 3.82
2276 2563 9.582223 GTTCTTCGTGTGTAAGAATTCTAAAAG 57.418 33.333 8.75 4.52 43.01 2.27
2296 2583 6.510879 AAAGGAGGTTCGAATGGATTTAAC 57.489 37.500 0.00 0.00 0.00 2.01
2302 2589 7.488150 GGAGGTTCGAATGGATTTAACATTTTC 59.512 37.037 0.00 0.00 38.57 2.29
2303 2590 7.027161 AGGTTCGAATGGATTTAACATTTTCG 58.973 34.615 0.00 0.00 38.57 3.46
2304 2591 6.237463 GGTTCGAATGGATTTAACATTTTCGC 60.237 38.462 0.00 0.00 38.57 4.70
2305 2592 5.025190 TCGAATGGATTTAACATTTTCGCG 58.975 37.500 0.00 0.00 38.57 5.87
2306 2593 4.791163 CGAATGGATTTAACATTTTCGCGT 59.209 37.500 5.77 0.00 38.57 6.01
2326 2996 4.791676 GCGTTTTCCTTTGAAACCGATATC 59.208 41.667 8.79 0.00 45.77 1.63
2345 3015 6.203723 CGATATCAAAGAAAATGGTCCTCCTC 59.796 42.308 3.12 0.00 34.23 3.71
2428 3122 3.842007 TTTTCCCACGTACCAAAGAGA 57.158 42.857 0.00 0.00 0.00 3.10
2436 3130 3.508793 CACGTACCAAAGAGACCCTTAGA 59.491 47.826 0.00 0.00 34.00 2.10
2460 3154 4.041567 TGCCACGACATCCAATTCCTATAT 59.958 41.667 0.00 0.00 0.00 0.86
2468 3162 7.230510 CGACATCCAATTCCTATATTTTTCCCA 59.769 37.037 0.00 0.00 0.00 4.37
2484 3178 7.789202 TTTTTCCCATTCATGTATTCTTGGA 57.211 32.000 0.00 0.00 0.00 3.53
2485 3179 7.789202 TTTTCCCATTCATGTATTCTTGGAA 57.211 32.000 0.00 0.00 0.00 3.53
2487 3181 6.964807 TCCCATTCATGTATTCTTGGAATG 57.035 37.500 0.00 0.00 0.00 2.67
2489 3183 6.547141 TCCCATTCATGTATTCTTGGAATGTC 59.453 38.462 0.00 0.00 0.00 3.06
2490 3184 6.432936 CCATTCATGTATTCTTGGAATGTCG 58.567 40.000 0.00 0.00 0.00 4.35
2491 3185 5.484173 TTCATGTATTCTTGGAATGTCGC 57.516 39.130 3.37 0.00 0.00 5.19
2493 3187 4.940654 TCATGTATTCTTGGAATGTCGCAA 59.059 37.500 3.37 0.00 0.00 4.85
2494 3188 5.414144 TCATGTATTCTTGGAATGTCGCAAA 59.586 36.000 3.37 0.00 0.00 3.68
2495 3189 5.895636 TGTATTCTTGGAATGTCGCAAAT 57.104 34.783 3.37 0.00 0.00 2.32
2497 3191 7.566760 TGTATTCTTGGAATGTCGCAAATAT 57.433 32.000 3.37 0.00 0.00 1.28
2547 3257 7.692291 CACTAACACTTCGCCAAATACAATTAG 59.308 37.037 0.00 0.00 0.00 1.73
2604 3314 3.311106 CAACACTTTTGCATGTAGCCTG 58.689 45.455 0.00 0.00 44.83 4.85
2676 3676 5.932303 GCAGAAACATCTGTACTGGAAACTA 59.068 40.000 14.63 0.00 39.76 2.24
2817 3821 8.301002 AGTAAACTACAACTCTGCAAAACAAAA 58.699 29.630 0.00 0.00 0.00 2.44
2829 3833 6.364706 TCTGCAAAACAAAACGCATAATTAGG 59.635 34.615 0.00 0.00 33.15 2.69
2876 3880 2.093869 GGTCGGTGGCTAGTATCAAACA 60.094 50.000 0.00 0.00 0.00 2.83
3095 4100 0.249447 AAGCAACGAAAGGGCAAAGC 60.249 50.000 0.00 0.00 37.88 3.51
3307 4312 5.066505 GGAGATAACTGTTCATTGCCGAATT 59.933 40.000 0.00 0.00 0.00 2.17
3308 4313 5.883661 AGATAACTGTTCATTGCCGAATTG 58.116 37.500 0.00 0.00 0.00 2.32
3418 4423 3.265221 TCAAAGATCTTCTCCATGGCAGT 59.735 43.478 8.78 0.00 0.00 4.40
3559 4564 4.479786 ACTTCTAGATGAGAACTTGGGC 57.520 45.455 12.31 0.00 39.36 5.36
3606 4611 0.537143 AGGTTGCTTTGCATGGACGA 60.537 50.000 0.00 0.00 38.76 4.20
3866 4872 3.607775 CGTGAGCAACATGAAAGTTCTGG 60.608 47.826 0.00 0.00 37.69 3.86
3871 4877 4.586001 AGCAACATGAAAGTTCTGGACAAT 59.414 37.500 0.00 0.00 0.00 2.71
4041 5047 3.977427 ACCGAAAAGGACAAAGCATTTC 58.023 40.909 0.00 0.00 45.00 2.17
4042 5048 3.243737 ACCGAAAAGGACAAAGCATTTCC 60.244 43.478 0.00 0.00 45.00 3.13
4043 5049 2.979813 CGAAAAGGACAAAGCATTTCCG 59.020 45.455 0.00 0.00 35.03 4.30
4046 5052 0.539438 AGGACAAAGCATTTCCGCCA 60.539 50.000 0.00 0.00 35.03 5.69
4054 5060 2.084546 AGCATTTCCGCCAGTTCTAAC 58.915 47.619 0.00 0.00 0.00 2.34
4064 5070 4.338682 CCGCCAGTTCTAACTCTACTATGT 59.661 45.833 0.00 0.00 37.08 2.29
4065 5071 5.530171 CCGCCAGTTCTAACTCTACTATGTA 59.470 44.000 0.00 0.00 37.08 2.29
4066 5072 6.428799 CGCCAGTTCTAACTCTACTATGTAC 58.571 44.000 0.00 0.00 37.08 2.90
4098 5104 6.451393 TGAACAATTTGGGCATGTTTAGTAC 58.549 36.000 0.78 0.00 37.41 2.73
4105 5111 4.929479 TGGGCATGTTTAGTACTTGGAAT 58.071 39.130 0.00 0.00 33.65 3.01
4110 5116 5.640732 CATGTTTAGTACTTGGAATGCACC 58.359 41.667 0.00 0.00 0.00 5.01
4112 5118 3.359695 TTAGTACTTGGAATGCACCCC 57.640 47.619 0.00 2.13 0.00 4.95
4129 5135 2.024414 CCCCGGAATTTCATGAGGAAC 58.976 52.381 0.73 0.00 34.56 3.62
4138 5144 1.191489 TCATGAGGAACGCAGGTCCA 61.191 55.000 13.82 0.00 44.30 4.02
4140 5146 0.620556 ATGAGGAACGCAGGTCCAAT 59.379 50.000 13.82 5.52 44.30 3.16
4147 5153 3.491104 GGAACGCAGGTCCAATAGTAGAG 60.491 52.174 7.62 0.00 0.00 2.43
4153 5159 4.274459 GCAGGTCCAATAGTAGAGCAAATG 59.726 45.833 0.00 0.00 32.93 2.32
4231 5237 5.255687 TCATCAGATGTAATTGCCAAGTGT 58.744 37.500 10.34 0.00 0.00 3.55
4251 5257 5.070446 AGTGTTCATCTTGTGAGGTCTACAA 59.930 40.000 0.00 0.00 38.29 2.41
4272 5278 1.694696 AGGGACTCTTGAGGACAACAC 59.305 52.381 2.55 0.00 32.27 3.32
4297 5303 3.388024 TGGTGGCAGTGAATATAGAGACC 59.612 47.826 0.00 0.00 0.00 3.85
4299 5305 2.035961 TGGCAGTGAATATAGAGACCGC 59.964 50.000 0.00 0.00 0.00 5.68
4300 5306 2.035961 GGCAGTGAATATAGAGACCGCA 59.964 50.000 0.00 0.00 0.00 5.69
4303 5312 4.294232 CAGTGAATATAGAGACCGCAGTG 58.706 47.826 0.00 0.00 0.00 3.66
4322 5331 3.461085 AGTGGATGAAGCCCATAGTGAAT 59.539 43.478 0.00 0.00 35.17 2.57
4323 5332 3.817647 GTGGATGAAGCCCATAGTGAATC 59.182 47.826 0.00 0.00 35.17 2.52
4329 5338 5.437060 TGAAGCCCATAGTGAATCCTTTAC 58.563 41.667 0.00 0.00 0.00 2.01
4351 5360 6.814506 ACAAATAGCATGCTCATCTATTCC 57.185 37.500 26.57 0.00 33.35 3.01
4353 5362 6.946583 ACAAATAGCATGCTCATCTATTCCAT 59.053 34.615 26.57 4.82 33.35 3.41
4363 5372 5.642919 GCTCATCTATTCCATCATTCTCCAC 59.357 44.000 0.00 0.00 0.00 4.02
4372 5381 7.959658 TTCCATCATTCTCCACAATAACATT 57.040 32.000 0.00 0.00 0.00 2.71
4373 5382 9.645128 ATTCCATCATTCTCCACAATAACATTA 57.355 29.630 0.00 0.00 0.00 1.90
4394 5403 7.286775 ACATTATCAAACTGTTGGGTTGTTACT 59.713 33.333 0.00 0.00 42.79 2.24
4498 5507 2.818432 CCCGCTTGGTATACGTCTAGAT 59.182 50.000 0.00 0.00 0.00 1.98
4568 5577 0.595588 TGCATTTGTGGGTGCTAACG 59.404 50.000 0.00 0.00 41.78 3.18
4574 5583 0.394938 TGTGGGTGCTAACGTCACAT 59.605 50.000 8.00 0.00 36.71 3.21
4609 5618 3.187700 GCTAGATGACAGTTTGGTACCG 58.812 50.000 7.57 0.00 0.00 4.02
4640 5649 2.435805 GGGCCTCTCTTCATATGTCACA 59.564 50.000 0.84 0.00 0.00 3.58
4647 5656 5.598769 TCTCTTCATATGTCACAGCATCAG 58.401 41.667 1.90 0.00 0.00 2.90
4651 5660 4.625028 TCATATGTCACAGCATCAGTAGC 58.375 43.478 1.90 0.00 0.00 3.58
4658 5667 2.608090 CACAGCATCAGTAGCACATCAG 59.392 50.000 0.00 0.00 0.00 2.90
4660 5669 1.836166 AGCATCAGTAGCACATCAGGT 59.164 47.619 0.00 0.00 0.00 4.00
4680 5689 6.549364 TCAGGTGATGTTTACAGTTTTGGAAT 59.451 34.615 0.00 0.00 0.00 3.01
4687 5696 7.654022 TGTTTACAGTTTTGGAATTCTCCTT 57.346 32.000 5.23 0.00 42.94 3.36
4763 5772 6.016276 GGAACTGAGGAAAGCTTACATGAAAA 60.016 38.462 0.00 0.00 0.00 2.29
4795 5804 3.629398 CCATGTTTGACAAGGAGATAGCC 59.371 47.826 0.00 0.00 39.18 3.93
4863 5872 2.622942 TGGACTGTTTGAAACTGGATGC 59.377 45.455 17.27 5.33 34.98 3.91
4867 5876 4.624015 ACTGTTTGAAACTGGATGCATTG 58.376 39.130 17.27 0.00 34.98 2.82
4905 5914 4.704833 GGTGGCAGAGCGGCTTCA 62.705 66.667 2.97 0.00 41.89 3.02
4929 5938 4.546570 AGGCTTAAAAATGTCGAAAGCAC 58.453 39.130 15.43 6.97 43.36 4.40
4972 5981 0.911769 CCATGCTGAGGAGGTTGGTA 59.088 55.000 0.00 0.00 0.00 3.25
5029 6038 1.228245 GGCCACCTGAGCAGAAACA 60.228 57.895 0.00 0.00 0.00 2.83
5031 6040 0.524862 GCCACCTGAGCAGAAACATG 59.475 55.000 0.00 0.00 0.00 3.21
5055 6064 7.808672 TGGAATTTGTGATCATTCATTTTTGC 58.191 30.769 0.00 0.00 33.56 3.68
5095 6119 4.430007 ACGCCATAGTGTGTATTGTACTG 58.570 43.478 0.00 0.00 34.74 2.74
5096 6120 3.245284 CGCCATAGTGTGTATTGTACTGC 59.755 47.826 0.00 0.00 0.00 4.40
5116 6140 3.817148 CCAATTTGGCATTGCTGTTTC 57.183 42.857 8.82 0.00 0.00 2.78
5117 6141 3.404899 CCAATTTGGCATTGCTGTTTCT 58.595 40.909 8.82 0.00 0.00 2.52
5119 6143 3.756933 ATTTGGCATTGCTGTTTCTGT 57.243 38.095 8.82 0.00 0.00 3.41
5120 6144 2.798976 TTGGCATTGCTGTTTCTGTC 57.201 45.000 8.82 0.00 0.00 3.51
5121 6145 1.689984 TGGCATTGCTGTTTCTGTCA 58.310 45.000 8.82 0.00 0.00 3.58
5122 6146 1.610038 TGGCATTGCTGTTTCTGTCAG 59.390 47.619 8.82 0.00 36.18 3.51
5123 6147 1.881973 GGCATTGCTGTTTCTGTCAGA 59.118 47.619 8.82 0.00 35.20 3.27
5124 6148 2.490903 GGCATTGCTGTTTCTGTCAGAT 59.509 45.455 8.82 0.00 35.20 2.90
5150 6174 1.153469 GAGAGCTTCCCTTCCAGCG 60.153 63.158 0.00 0.00 41.24 5.18
5162 6186 1.764571 TTCCAGCGATAATCCCCCGG 61.765 60.000 0.00 0.00 0.00 5.73
5223 6247 9.305925 GCATAAAATCAACCTCTGGAAAAATAG 57.694 33.333 0.00 0.00 0.00 1.73
5272 6296 5.670485 AGGAATTTGGGTTTGTCAAGAAAC 58.330 37.500 0.00 0.00 35.45 2.78
5278 6302 2.190161 GGTTTGTCAAGAAACGCCAAC 58.810 47.619 0.00 0.00 36.80 3.77
5292 6316 1.511850 GCCAACCATGTTTTCCAAGC 58.488 50.000 0.00 0.00 0.00 4.01
5306 6330 4.953940 TTCCAAGCAAAGCAAGGTTAAT 57.046 36.364 0.00 0.00 0.00 1.40
5317 6341 4.338879 AGCAAGGTTAATCAGATGCAAGT 58.661 39.130 11.98 0.00 36.30 3.16
5336 6360 1.456331 CTCCCAATCCCATGCCACC 60.456 63.158 0.00 0.00 0.00 4.61
5355 6379 1.669795 CCTTTGCATTTCGGAGTTGCC 60.670 52.381 10.51 0.00 35.51 4.52
5356 6380 1.000385 CTTTGCATTTCGGAGTTGCCA 60.000 47.619 10.51 0.00 35.51 4.92
5357 6381 0.597568 TTGCATTTCGGAGTTGCCAG 59.402 50.000 10.51 0.00 35.51 4.85
5358 6382 1.243342 TGCATTTCGGAGTTGCCAGG 61.243 55.000 10.51 0.00 35.51 4.45
5359 6383 1.244019 GCATTTCGGAGTTGCCAGGT 61.244 55.000 3.60 0.00 35.94 4.00
5360 6384 1.948611 GCATTTCGGAGTTGCCAGGTA 60.949 52.381 3.60 0.00 35.94 3.08
5361 6385 2.009774 CATTTCGGAGTTGCCAGGTAG 58.990 52.381 0.00 0.00 35.94 3.18
5362 6386 1.053424 TTTCGGAGTTGCCAGGTAGT 58.947 50.000 0.00 0.00 35.94 2.73
5363 6387 1.053424 TTCGGAGTTGCCAGGTAGTT 58.947 50.000 0.00 0.00 35.94 2.24
5364 6388 0.320374 TCGGAGTTGCCAGGTAGTTG 59.680 55.000 0.00 0.00 35.94 3.16
5365 6389 1.298859 CGGAGTTGCCAGGTAGTTGC 61.299 60.000 0.00 0.00 35.94 4.17
5366 6390 0.036875 GGAGTTGCCAGGTAGTTGCT 59.963 55.000 0.00 0.00 36.34 3.91
5367 6391 1.278127 GGAGTTGCCAGGTAGTTGCTA 59.722 52.381 0.00 0.00 36.34 3.49
5383 6407 0.391793 GCTAGGTTGCTCCAGGACAC 60.392 60.000 0.00 0.00 39.02 3.67
5414 6438 5.698089 CACTGATTTCTTGTCAAGTGAGCTA 59.302 40.000 12.30 0.00 31.93 3.32
5415 6439 6.203530 CACTGATTTCTTGTCAAGTGAGCTAA 59.796 38.462 12.30 0.00 31.93 3.09
5430 6454 9.859427 CAAGTGAGCTAATCCAAAAATATTTCA 57.141 29.630 0.10 0.00 0.00 2.69
5439 6463 7.695074 ATCCAAAAATATTTCACCATGGGAT 57.305 32.000 18.09 7.03 0.00 3.85
5460 6484 9.629878 TGGGATAAGTTAAAACTCTTACAAACA 57.370 29.630 0.00 0.00 38.57 2.83
5491 6528 4.946784 AACAGGAACATACTCGAATTGC 57.053 40.909 0.00 0.00 0.00 3.56
5523 6561 5.123979 ACCGATTTCAGAAGAATTTACTGGC 59.876 40.000 0.00 0.00 32.89 4.85
5533 6571 1.586154 ATTTACTGGCCAGCACACGC 61.586 55.000 33.06 0.00 38.99 5.34
5544 6582 3.845625 GCACACGCTAGCAGTTTTT 57.154 47.368 16.45 0.00 34.30 1.94
5545 6583 1.674908 GCACACGCTAGCAGTTTTTC 58.325 50.000 16.45 0.00 34.30 2.29
5546 6584 1.002900 GCACACGCTAGCAGTTTTTCA 60.003 47.619 16.45 0.00 34.30 2.69
5547 6585 2.908634 CACACGCTAGCAGTTTTTCAG 58.091 47.619 16.45 3.67 0.00 3.02
5548 6586 2.543848 CACACGCTAGCAGTTTTTCAGA 59.456 45.455 16.45 0.00 0.00 3.27
5549 6587 3.002246 CACACGCTAGCAGTTTTTCAGAA 59.998 43.478 16.45 0.00 0.00 3.02
5550 6588 3.002348 ACACGCTAGCAGTTTTTCAGAAC 59.998 43.478 16.45 0.00 0.00 3.01
5551 6589 3.002246 CACGCTAGCAGTTTTTCAGAACA 59.998 43.478 16.45 0.00 31.94 3.18
5552 6590 3.815401 ACGCTAGCAGTTTTTCAGAACAT 59.185 39.130 16.45 0.00 31.94 2.71
5553 6591 4.083802 ACGCTAGCAGTTTTTCAGAACATC 60.084 41.667 16.45 0.00 31.94 3.06
5554 6592 4.670221 CGCTAGCAGTTTTTCAGAACATCC 60.670 45.833 16.45 0.00 31.94 3.51
5555 6593 4.379918 GCTAGCAGTTTTTCAGAACATCCC 60.380 45.833 10.63 0.00 31.94 3.85
5556 6594 3.837355 AGCAGTTTTTCAGAACATCCCT 58.163 40.909 0.00 0.00 31.94 4.20
5557 6595 3.571401 AGCAGTTTTTCAGAACATCCCTG 59.429 43.478 0.00 0.00 31.94 4.45
5558 6596 3.305608 GCAGTTTTTCAGAACATCCCTGG 60.306 47.826 0.00 0.00 32.73 4.45
5559 6597 4.144297 CAGTTTTTCAGAACATCCCTGGA 58.856 43.478 0.00 0.00 32.73 3.86
5560 6598 4.768968 CAGTTTTTCAGAACATCCCTGGAT 59.231 41.667 0.00 0.00 34.81 3.41
5561 6599 5.012893 AGTTTTTCAGAACATCCCTGGATC 58.987 41.667 0.00 0.00 31.62 3.36
5562 6600 4.656100 TTTTCAGAACATCCCTGGATCA 57.344 40.909 0.00 0.00 31.62 2.92
5563 6601 4.868172 TTTCAGAACATCCCTGGATCAT 57.132 40.909 0.00 0.00 31.62 2.45
5564 6602 4.868172 TTCAGAACATCCCTGGATCATT 57.132 40.909 0.00 0.00 31.62 2.57
5565 6603 4.428294 TCAGAACATCCCTGGATCATTC 57.572 45.455 0.00 10.02 31.62 2.67
5566 6604 3.137176 TCAGAACATCCCTGGATCATTCC 59.863 47.826 12.83 0.00 42.94 3.01
5567 6605 3.137913 CAGAACATCCCTGGATCATTCCT 59.862 47.826 12.83 3.00 43.07 3.36
5568 6606 3.393941 AGAACATCCCTGGATCATTCCTC 59.606 47.826 12.83 0.00 43.07 3.71
5569 6607 3.071967 ACATCCCTGGATCATTCCTCT 57.928 47.619 0.00 0.00 43.07 3.69
5570 6608 4.219392 ACATCCCTGGATCATTCCTCTA 57.781 45.455 0.00 0.00 43.07 2.43
5571 6609 4.166539 ACATCCCTGGATCATTCCTCTAG 58.833 47.826 0.00 0.00 43.07 2.43
5572 6610 2.614259 TCCCTGGATCATTCCTCTAGC 58.386 52.381 0.00 0.00 43.07 3.42
5573 6611 2.180973 TCCCTGGATCATTCCTCTAGCT 59.819 50.000 0.00 0.00 43.07 3.32
5574 6612 2.566724 CCCTGGATCATTCCTCTAGCTC 59.433 54.545 0.00 0.00 43.07 4.09
5575 6613 3.509442 CCTGGATCATTCCTCTAGCTCT 58.491 50.000 0.00 0.00 43.07 4.09
5576 6614 3.511146 CCTGGATCATTCCTCTAGCTCTC 59.489 52.174 0.00 0.00 43.07 3.20
5583 6621 1.205055 TCCTCTAGCTCTCTCACGGA 58.795 55.000 0.00 0.00 0.00 4.69
5600 6638 2.358247 ATGTGGTCGAACGTGCCC 60.358 61.111 0.00 0.00 0.00 5.36
5608 6646 1.135721 GTCGAACGTGCCCCTAGTAAT 59.864 52.381 0.00 0.00 0.00 1.89
5609 6647 2.358898 GTCGAACGTGCCCCTAGTAATA 59.641 50.000 0.00 0.00 0.00 0.98
5620 6658 2.035576 CCCTAGTAATACGACCCACTGC 59.964 54.545 0.00 0.00 0.00 4.40
5629 6668 1.905512 GACCCACTGCGGTAGGAAT 59.094 57.895 17.74 0.00 35.79 3.01
5632 6671 1.819632 CCACTGCGGTAGGAATGCC 60.820 63.158 0.00 0.00 0.00 4.40
5657 6696 1.859302 ATCTCTCGTTGAAGGCCTCT 58.141 50.000 5.23 0.00 0.00 3.69
5658 6697 1.633774 TCTCTCGTTGAAGGCCTCTT 58.366 50.000 5.23 0.00 35.62 2.85
5670 6709 1.005215 AGGCCTCTTCAACCAGGAATG 59.995 52.381 0.00 0.00 30.32 2.67
5695 6734 1.285962 CTTCCCCAATCCCAGTGTCAT 59.714 52.381 0.00 0.00 0.00 3.06
5706 6745 4.379174 GTGTCATGCACTCCCGTT 57.621 55.556 11.51 0.00 44.41 4.44
5722 6761 2.412870 CCGTTCATACACAGCAACTCA 58.587 47.619 0.00 0.00 0.00 3.41
5726 6765 3.751479 TCATACACAGCAACTCACACT 57.249 42.857 0.00 0.00 0.00 3.55
5728 6767 3.321968 TCATACACAGCAACTCACACTCT 59.678 43.478 0.00 0.00 0.00 3.24
5730 6769 2.991250 ACACAGCAACTCACACTCTTT 58.009 42.857 0.00 0.00 0.00 2.52
5731 6770 3.347216 ACACAGCAACTCACACTCTTTT 58.653 40.909 0.00 0.00 0.00 2.27
5745 6784 3.188048 CACTCTTTTAACAGCTCCAGCAG 59.812 47.826 0.48 0.00 45.16 4.24
5794 6845 2.194800 AGACGTCACATATGCTCACG 57.805 50.000 19.50 16.15 36.54 4.35
5798 6849 1.065551 CGTCACATATGCTCACGAGGA 59.934 52.381 13.68 0.00 32.08 3.71
5930 6981 4.343323 CGTGACATGGGCCCCACA 62.343 66.667 22.27 11.30 35.80 4.17
5951 7002 0.531532 ATGCCGATTCTTGGAGCTCG 60.532 55.000 7.83 0.00 0.00 5.03
5982 7033 2.764128 TGGAGATCGTGGAGGGGC 60.764 66.667 0.00 0.00 0.00 5.80
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
163 170 1.613317 ATACCCTGCGTGCTGCTACA 61.613 55.000 0.00 0.00 46.63 2.74
172 179 2.456073 AACTAGAGGATACCCTGCGT 57.544 50.000 0.00 0.00 44.53 5.24
229 236 2.968574 AGTAGGACTCCACCTATGCATG 59.031 50.000 10.16 0.00 43.25 4.06
399 406 4.154918 GGTGGAACTTTCTGCTGACATTAG 59.845 45.833 0.00 0.00 36.74 1.73
404 411 0.868406 CGGTGGAACTTTCTGCTGAC 59.132 55.000 0.00 0.00 36.74 3.51
457 464 3.754850 TGCATACGTCTGTACTGTGTACT 59.245 43.478 0.00 0.00 32.26 2.73
461 468 3.172050 GAGTGCATACGTCTGTACTGTG 58.828 50.000 25.15 0.00 41.38 3.66
463 470 3.487563 TGAGTGCATACGTCTGTACTG 57.512 47.619 25.15 2.29 41.38 2.74
476 483 5.861787 GTGTACGTGCATATATATGAGTGCA 59.138 40.000 24.06 22.31 44.50 4.57
478 485 7.271438 GTGAGTGTACGTGCATATATATGAGTG 59.729 40.741 24.06 14.51 35.75 3.51
479 486 7.306213 GTGAGTGTACGTGCATATATATGAGT 58.694 38.462 24.06 20.00 35.75 3.41
482 489 5.805486 GGGTGAGTGTACGTGCATATATATG 59.195 44.000 17.01 17.01 36.78 1.78
490 497 1.000060 GTAAGGGTGAGTGTACGTGCA 60.000 52.381 0.82 0.82 0.00 4.57
491 498 1.706443 GTAAGGGTGAGTGTACGTGC 58.294 55.000 0.00 0.00 0.00 5.34
493 500 1.609208 ACGTAAGGGTGAGTGTACGT 58.391 50.000 2.13 2.13 45.54 3.57
507 514 1.600164 GGATATGGTGCGCGTACGTAA 60.600 52.381 20.97 9.68 42.83 3.18
510 517 2.019951 GGGATATGGTGCGCGTACG 61.020 63.158 20.97 11.84 44.07 3.67
512 519 1.203758 CATAGGGATATGGTGCGCGTA 59.796 52.381 8.43 0.00 0.00 4.42
515 522 2.009042 GCTCATAGGGATATGGTGCGC 61.009 57.143 0.00 0.00 0.00 6.09
517 524 2.616510 GGTGCTCATAGGGATATGGTGC 60.617 54.545 0.00 0.00 0.00 5.01
526 539 1.339610 CTCTCGAAGGTGCTCATAGGG 59.660 57.143 0.00 0.00 0.00 3.53
527 540 2.034053 GTCTCTCGAAGGTGCTCATAGG 59.966 54.545 0.00 0.00 0.00 2.57
532 545 1.132262 CTCAGTCTCTCGAAGGTGCTC 59.868 57.143 0.00 0.00 0.00 4.26
540 553 3.134792 GCCGGCTCAGTCTCTCGA 61.135 66.667 22.15 0.00 0.00 4.04
545 558 1.274728 GATGATATGCCGGCTCAGTCT 59.725 52.381 29.70 8.26 0.00 3.24
557 570 9.468532 TGACTTCGTCAATCTAAAGATGATATG 57.531 33.333 0.00 0.00 39.78 1.78
577 590 4.795970 ATGAAACGTCTGTGTTGACTTC 57.204 40.909 0.00 0.00 35.00 3.01
581 594 4.939271 TGACTATGAAACGTCTGTGTTGA 58.061 39.130 0.00 0.00 31.10 3.18
584 597 3.734231 CGTTGACTATGAAACGTCTGTGT 59.266 43.478 0.00 0.00 43.11 3.72
585 598 3.121279 CCGTTGACTATGAAACGTCTGTG 59.879 47.826 7.12 0.00 45.84 3.66
587 600 3.571571 TCCGTTGACTATGAAACGTCTG 58.428 45.455 7.12 0.00 45.84 3.51
594 607 5.046591 AGGAGATGTTTCCGTTGACTATGAA 60.047 40.000 0.00 0.00 42.29 2.57
597 610 5.422214 AAGGAGATGTTTCCGTTGACTAT 57.578 39.130 0.00 0.00 42.29 2.12
603 616 3.815401 CAGTGAAAGGAGATGTTTCCGTT 59.185 43.478 0.00 0.00 42.29 4.44
619 632 1.204228 GACGACGCGTGTTCAGTGAA 61.204 55.000 20.70 0.08 41.37 3.18
633 646 7.960738 TGAATTTATTTCAGGATTTTCGACGAC 59.039 33.333 0.00 0.00 39.44 4.34
657 670 7.581213 ATCCCTGTATTCGCATTTATTTTGA 57.419 32.000 0.00 0.00 0.00 2.69
660 673 8.006298 TCAAATCCCTGTATTCGCATTTATTT 57.994 30.769 0.00 0.00 0.00 1.40
661 674 7.581213 TCAAATCCCTGTATTCGCATTTATT 57.419 32.000 0.00 0.00 0.00 1.40
672 685 6.944862 GCCTATCAGAATTCAAATCCCTGTAT 59.055 38.462 8.44 0.00 0.00 2.29
673 686 6.101734 AGCCTATCAGAATTCAAATCCCTGTA 59.898 38.462 8.44 0.00 0.00 2.74
675 688 5.241064 CAGCCTATCAGAATTCAAATCCCTG 59.759 44.000 8.44 2.41 0.00 4.45
676 689 5.383476 CAGCCTATCAGAATTCAAATCCCT 58.617 41.667 8.44 0.00 0.00 4.20
677 690 4.522022 CCAGCCTATCAGAATTCAAATCCC 59.478 45.833 8.44 0.00 0.00 3.85
681 694 7.285401 GGTATTTCCAGCCTATCAGAATTCAAA 59.715 37.037 8.44 0.00 35.97 2.69
700 713 5.801380 TGGTTAGAAGGACAGTGGTATTTC 58.199 41.667 0.00 0.00 0.00 2.17
701 714 5.836024 TGGTTAGAAGGACAGTGGTATTT 57.164 39.130 0.00 0.00 0.00 1.40
709 722 3.009033 TGGTTGGATGGTTAGAAGGACAG 59.991 47.826 0.00 0.00 0.00 3.51
718 731 4.079500 TCCTGCATATTGGTTGGATGGTTA 60.080 41.667 0.00 0.00 0.00 2.85
752 772 0.531200 CTACCGAGACCCAACCACTC 59.469 60.000 0.00 0.00 0.00 3.51
807 829 1.599797 GTCACACTCCCAAACCCCG 60.600 63.158 0.00 0.00 0.00 5.73
808 830 0.537371 CTGTCACACTCCCAAACCCC 60.537 60.000 0.00 0.00 0.00 4.95
809 831 0.472471 TCTGTCACACTCCCAAACCC 59.528 55.000 0.00 0.00 0.00 4.11
810 832 1.543429 CCTCTGTCACACTCCCAAACC 60.543 57.143 0.00 0.00 0.00 3.27
811 833 1.416401 TCCTCTGTCACACTCCCAAAC 59.584 52.381 0.00 0.00 0.00 2.93
893 915 2.863704 GCAACAAATCAAGCACTGTCCC 60.864 50.000 0.00 0.00 0.00 4.46
929 955 4.949856 ACCACAATTCGATATGCTCCTTTT 59.050 37.500 0.00 0.00 0.00 2.27
934 960 3.621794 GCAACCACAATTCGATATGCTC 58.378 45.455 0.00 0.00 0.00 4.26
935 961 2.032054 CGCAACCACAATTCGATATGCT 59.968 45.455 0.00 0.00 0.00 3.79
936 962 2.375110 CGCAACCACAATTCGATATGC 58.625 47.619 0.00 0.00 0.00 3.14
937 963 2.375110 GCGCAACCACAATTCGATATG 58.625 47.619 0.30 0.00 0.00 1.78
963 1005 2.021457 ACTTCCAAGTTTCCAACCACG 58.979 47.619 0.00 0.00 35.21 4.94
1021 1063 1.792949 GCGATGACGATGTAATGGACC 59.207 52.381 0.00 0.00 42.66 4.46
1029 1071 1.739338 GAGGGAGGCGATGACGATGT 61.739 60.000 0.00 0.00 42.66 3.06
1033 1075 4.933064 GCGAGGGAGGCGATGACG 62.933 72.222 0.00 0.00 42.93 4.35
1099 1144 3.838244 ACAGAATACATACCACGGCAT 57.162 42.857 0.00 0.00 0.00 4.40
1100 1145 3.491964 GCTACAGAATACATACCACGGCA 60.492 47.826 0.00 0.00 0.00 5.69
1101 1146 3.057734 GCTACAGAATACATACCACGGC 58.942 50.000 0.00 0.00 0.00 5.68
1102 1147 4.585955 AGCTACAGAATACATACCACGG 57.414 45.455 0.00 0.00 0.00 4.94
1114 1159 8.211629 AGAAAAGGAAGAAGTTAAGCTACAGAA 58.788 33.333 0.00 0.00 0.00 3.02
1138 1183 6.828273 TGTCAAGAAATCAACCAAGAGAAAGA 59.172 34.615 0.00 0.00 0.00 2.52
1139 1184 7.031226 TGTCAAGAAATCAACCAAGAGAAAG 57.969 36.000 0.00 0.00 0.00 2.62
1142 1187 5.474532 CCATGTCAAGAAATCAACCAAGAGA 59.525 40.000 0.00 0.00 0.00 3.10
1143 1188 5.474532 TCCATGTCAAGAAATCAACCAAGAG 59.525 40.000 0.00 0.00 0.00 2.85
1144 1189 5.384336 TCCATGTCAAGAAATCAACCAAGA 58.616 37.500 0.00 0.00 0.00 3.02
1145 1190 5.242393 ACTCCATGTCAAGAAATCAACCAAG 59.758 40.000 0.00 0.00 0.00 3.61
1146 1191 5.009911 CACTCCATGTCAAGAAATCAACCAA 59.990 40.000 0.00 0.00 0.00 3.67
1147 1192 4.520111 CACTCCATGTCAAGAAATCAACCA 59.480 41.667 0.00 0.00 0.00 3.67
1148 1193 4.616835 GCACTCCATGTCAAGAAATCAACC 60.617 45.833 0.00 0.00 0.00 3.77
1149 1194 4.479619 GCACTCCATGTCAAGAAATCAAC 58.520 43.478 0.00 0.00 0.00 3.18
1225 1270 7.175816 TGTTGACCAATTTATTTCGAAGGATGA 59.824 33.333 0.00 0.00 0.00 2.92
1227 1272 7.461182 TGTTGACCAATTTATTTCGAAGGAT 57.539 32.000 0.00 0.00 0.00 3.24
1259 1304 1.213296 GGATTGGAGAGGCCCTAACA 58.787 55.000 0.00 0.00 34.97 2.41
1301 1346 3.193479 AGTTTTGATCCTCCGAAATTGCC 59.807 43.478 0.00 0.00 0.00 4.52
1380 1435 3.522553 CCACCGAATCACTACTCCTTTC 58.477 50.000 0.00 0.00 0.00 2.62
1383 1438 1.486211 CCCACCGAATCACTACTCCT 58.514 55.000 0.00 0.00 0.00 3.69
1388 1443 1.220749 GCTGCCCACCGAATCACTA 59.779 57.895 0.00 0.00 0.00 2.74
1389 1444 2.045926 GCTGCCCACCGAATCACT 60.046 61.111 0.00 0.00 0.00 3.41
1390 1445 1.718757 GATGCTGCCCACCGAATCAC 61.719 60.000 0.00 0.00 0.00 3.06
1391 1446 1.451927 GATGCTGCCCACCGAATCA 60.452 57.895 0.00 0.00 0.00 2.57
1392 1447 2.189499 GGATGCTGCCCACCGAATC 61.189 63.158 0.00 0.00 0.00 2.52
1395 1450 2.043604 CTATGGATGCTGCCCACCGA 62.044 60.000 0.00 0.00 36.36 4.69
1400 1455 2.659428 ACTTTTCTATGGATGCTGCCC 58.341 47.619 0.00 0.00 0.00 5.36
1401 1456 4.440663 GGAAACTTTTCTATGGATGCTGCC 60.441 45.833 0.00 0.00 37.35 4.85
1436 1653 2.158971 TGGAAGCTTTTTCCCTGCAAAC 60.159 45.455 0.00 0.00 37.79 2.93
1482 1699 7.915397 GTGTGTTACAATTGTCAGAGAAACAAT 59.085 33.333 15.85 0.00 46.53 2.71
1491 1710 4.761745 CTGACGTGTGTTACAATTGTCAG 58.238 43.478 15.85 19.84 42.78 3.51
1503 1722 4.097437 TCTGTAAAGAAGACTGACGTGTGT 59.903 41.667 0.00 0.00 0.00 3.72
1504 1723 4.607955 TCTGTAAAGAAGACTGACGTGTG 58.392 43.478 0.00 0.00 0.00 3.82
1523 1742 3.058914 CACCGTAAAACAGCTCCTTTCTG 60.059 47.826 0.00 0.00 37.56 3.02
1524 1743 3.139077 CACCGTAAAACAGCTCCTTTCT 58.861 45.455 0.00 0.00 0.00 2.52
1525 1744 3.135994 TCACCGTAAAACAGCTCCTTTC 58.864 45.455 0.00 0.00 0.00 2.62
1526 1745 3.202829 TCACCGTAAAACAGCTCCTTT 57.797 42.857 0.00 0.00 0.00 3.11
1527 1746 2.922740 TCACCGTAAAACAGCTCCTT 57.077 45.000 0.00 0.00 0.00 3.36
1528 1747 3.008049 AGAATCACCGTAAAACAGCTCCT 59.992 43.478 0.00 0.00 0.00 3.69
1529 1748 3.335579 AGAATCACCGTAAAACAGCTCC 58.664 45.455 0.00 0.00 0.00 4.70
1530 1749 4.691216 AGAAGAATCACCGTAAAACAGCTC 59.309 41.667 0.00 0.00 0.00 4.09
1531 1750 4.452455 CAGAAGAATCACCGTAAAACAGCT 59.548 41.667 0.00 0.00 0.00 4.24
1532 1751 4.213482 ACAGAAGAATCACCGTAAAACAGC 59.787 41.667 0.00 0.00 0.00 4.40
1533 1752 5.465390 TCACAGAAGAATCACCGTAAAACAG 59.535 40.000 0.00 0.00 0.00 3.16
1534 1753 5.361427 TCACAGAAGAATCACCGTAAAACA 58.639 37.500 0.00 0.00 0.00 2.83
1535 1754 5.917541 TCACAGAAGAATCACCGTAAAAC 57.082 39.130 0.00 0.00 0.00 2.43
1536 1755 5.106712 GCATCACAGAAGAATCACCGTAAAA 60.107 40.000 0.00 0.00 0.00 1.52
1537 1756 4.391830 GCATCACAGAAGAATCACCGTAAA 59.608 41.667 0.00 0.00 0.00 2.01
1538 1757 3.932710 GCATCACAGAAGAATCACCGTAA 59.067 43.478 0.00 0.00 0.00 3.18
1539 1758 3.056179 TGCATCACAGAAGAATCACCGTA 60.056 43.478 0.00 0.00 0.00 4.02
1540 1759 2.289631 TGCATCACAGAAGAATCACCGT 60.290 45.455 0.00 0.00 0.00 4.83
1541 1760 2.349590 TGCATCACAGAAGAATCACCG 58.650 47.619 0.00 0.00 0.00 4.94
1542 1761 3.427233 GCTTGCATCACAGAAGAATCACC 60.427 47.826 0.00 0.00 0.00 4.02
1543 1762 3.189910 TGCTTGCATCACAGAAGAATCAC 59.810 43.478 0.00 0.00 0.00 3.06
1544 1763 3.414269 TGCTTGCATCACAGAAGAATCA 58.586 40.909 0.00 0.00 0.00 2.57
1545 1764 4.430137 TTGCTTGCATCACAGAAGAATC 57.570 40.909 0.00 0.00 0.00 2.52
1546 1765 4.038282 TGTTTGCTTGCATCACAGAAGAAT 59.962 37.500 0.00 0.00 0.00 2.40
1547 1766 3.380954 TGTTTGCTTGCATCACAGAAGAA 59.619 39.130 0.00 0.00 0.00 2.52
1548 1767 2.950975 TGTTTGCTTGCATCACAGAAGA 59.049 40.909 0.00 0.00 0.00 2.87
1549 1768 3.358707 TGTTTGCTTGCATCACAGAAG 57.641 42.857 0.00 0.00 0.00 2.85
1550 1769 3.797451 TTGTTTGCTTGCATCACAGAA 57.203 38.095 0.00 0.00 0.00 3.02
1551 1770 3.570975 AGATTGTTTGCTTGCATCACAGA 59.429 39.130 0.00 0.00 0.00 3.41
1552 1771 3.909430 AGATTGTTTGCTTGCATCACAG 58.091 40.909 0.00 0.00 0.00 3.66
1553 1772 3.570975 AGAGATTGTTTGCTTGCATCACA 59.429 39.130 0.00 0.29 0.00 3.58
1554 1773 4.170292 AGAGATTGTTTGCTTGCATCAC 57.830 40.909 0.00 0.00 0.00 3.06
1555 1774 5.005740 AGTAGAGATTGTTTGCTTGCATCA 58.994 37.500 0.00 0.00 0.00 3.07
1556 1775 5.557891 AGTAGAGATTGTTTGCTTGCATC 57.442 39.130 0.00 0.00 0.00 3.91
1557 1776 5.474532 TGAAGTAGAGATTGTTTGCTTGCAT 59.525 36.000 0.00 0.00 0.00 3.96
1558 1777 4.821260 TGAAGTAGAGATTGTTTGCTTGCA 59.179 37.500 0.00 0.00 0.00 4.08
1559 1778 5.362556 TGAAGTAGAGATTGTTTGCTTGC 57.637 39.130 0.00 0.00 0.00 4.01
1573 1792 5.975988 AAGGCCCTCAAATATGAAGTAGA 57.024 39.130 0.00 0.00 34.49 2.59
1576 1795 5.046376 CCAAAAAGGCCCTCAAATATGAAGT 60.046 40.000 0.00 0.00 34.49 3.01
1592 1811 7.496747 TGGAAATACTTTCTGAACCAAAAAGG 58.503 34.615 0.00 0.00 40.58 3.11
1609 1829 6.436218 ACCCTCCAAACTTTGTATGGAAATAC 59.564 38.462 0.88 0.00 42.41 1.89
1621 1841 5.074515 TGAGGAATAGAACCCTCCAAACTTT 59.925 40.000 0.00 0.00 46.43 2.66
1654 1874 4.567959 CACGAACAAGCATCATATGTGAGA 59.432 41.667 1.90 0.00 37.87 3.27
1666 1886 2.907634 TCCTACAAACACGAACAAGCA 58.092 42.857 0.00 0.00 0.00 3.91
1667 1887 4.024387 TCAATCCTACAAACACGAACAAGC 60.024 41.667 0.00 0.00 0.00 4.01
1674 1894 9.225201 CATATGATTTTCAATCCTACAAACACG 57.775 33.333 0.00 0.00 0.00 4.49
1693 1913 4.422073 TCGCAGGAGAAAACCATATGAT 57.578 40.909 3.65 0.00 0.00 2.45
1694 1914 3.904800 TCGCAGGAGAAAACCATATGA 57.095 42.857 3.65 0.00 0.00 2.15
1711 1931 0.311477 GAACGGAGGGAGTAGATCGC 59.689 60.000 0.00 0.00 41.11 4.58
1712 1932 1.676746 TGAACGGAGGGAGTAGATCG 58.323 55.000 0.00 0.00 0.00 3.69
1760 1981 8.732746 AATACTTATCGTGGTTTTAGCTCAAT 57.267 30.769 0.00 0.00 0.00 2.57
1765 1986 7.754625 TCCAAAATACTTATCGTGGTTTTAGC 58.245 34.615 0.00 0.00 0.00 3.09
1778 1999 3.054213 CCCCCTCCGTTCCAAAATACTTA 60.054 47.826 0.00 0.00 0.00 2.24
1789 2010 2.502947 ACATAAAGTACCCCCTCCGTTC 59.497 50.000 0.00 0.00 0.00 3.95
1799 2020 5.122396 CCTCTGAAACTGCACATAAAGTACC 59.878 44.000 0.00 0.00 0.00 3.34
1824 2045 7.337689 CCATGAGGTTTGATTAAATGAGAGTCA 59.662 37.037 0.00 0.00 0.00 3.41
1961 2182 3.689649 AGGAATTGCCATCGTTTGACTAC 59.310 43.478 0.00 0.00 40.02 2.73
1962 2183 3.938963 GAGGAATTGCCATCGTTTGACTA 59.061 43.478 0.00 0.00 40.02 2.59
1964 2185 2.159379 GGAGGAATTGCCATCGTTTGAC 60.159 50.000 0.00 0.00 40.02 3.18
1966 2187 1.202177 CGGAGGAATTGCCATCGTTTG 60.202 52.381 0.00 0.00 40.02 2.93
1967 2188 1.094785 CGGAGGAATTGCCATCGTTT 58.905 50.000 0.00 0.00 40.02 3.60
1969 2190 0.469917 ATCGGAGGAATTGCCATCGT 59.530 50.000 0.00 0.00 40.02 3.73
1970 2191 1.597742 AATCGGAGGAATTGCCATCG 58.402 50.000 0.00 0.00 40.02 3.84
1971 2192 3.243535 GGAAAATCGGAGGAATTGCCATC 60.244 47.826 0.00 0.00 40.02 3.51
2001 2241 5.467063 TCAAAGGAAAACACACAAAAACACC 59.533 36.000 0.00 0.00 0.00 4.16
2068 2345 9.553064 TTTCTGCCATATTAATGTGTTTGTTTT 57.447 25.926 10.82 0.00 0.00 2.43
2089 2366 7.195646 TGTAGTCTTCTTTTTGCACATTTCTG 58.804 34.615 0.00 0.00 0.00 3.02
2118 2399 7.226523 ACTCCCAAGTTTACAAAATTCATTTGC 59.773 33.333 1.08 0.00 41.71 3.68
2215 2498 6.953101 TCTTTAGTGGCATAACAACATCCTA 58.047 36.000 0.00 0.00 0.00 2.94
2217 2500 6.509418 TTCTTTAGTGGCATAACAACATCC 57.491 37.500 0.00 0.00 0.00 3.51
2225 2512 5.741011 AGACCGAATTCTTTAGTGGCATAA 58.259 37.500 3.52 0.00 0.00 1.90
2243 2530 1.567504 ACACACGAAGAACAAGACCG 58.432 50.000 0.00 0.00 0.00 4.79
2249 2536 8.651391 TTTAGAATTCTTACACACGAAGAACA 57.349 30.769 14.36 0.00 43.73 3.18
2260 2547 7.673180 TCGAACCTCCTTTTAGAATTCTTACA 58.327 34.615 14.36 0.00 0.00 2.41
2261 2548 8.543862 TTCGAACCTCCTTTTAGAATTCTTAC 57.456 34.615 14.36 0.00 0.00 2.34
2276 2563 6.451064 AATGTTAAATCCATTCGAACCTCC 57.549 37.500 0.00 0.00 0.00 4.30
2296 2583 5.187480 GTTTCAAAGGAAAACGCGAAAATG 58.813 37.500 15.93 0.47 44.18 2.32
2326 2996 6.410942 AAAAGAGGAGGACCATTTTCTTTG 57.589 37.500 11.59 0.00 37.18 2.77
2428 3122 1.139058 GATGTCGTGGCATCTAAGGGT 59.861 52.381 7.19 0.00 41.35 4.34
2436 3130 1.064463 AGGAATTGGATGTCGTGGCAT 60.064 47.619 0.00 0.00 0.00 4.40
2460 3154 7.789202 TCCAAGAATACATGAATGGGAAAAA 57.211 32.000 0.00 0.00 0.00 1.94
2468 3162 5.589855 TGCGACATTCCAAGAATACATGAAT 59.410 36.000 0.00 0.00 0.00 2.57
2482 3176 7.272084 GCATCTTGATTATATTTGCGACATTCC 59.728 37.037 0.00 0.00 0.00 3.01
2483 3177 8.019669 AGCATCTTGATTATATTTGCGACATTC 58.980 33.333 0.00 0.00 33.99 2.67
2484 3178 7.879070 AGCATCTTGATTATATTTGCGACATT 58.121 30.769 0.00 0.00 33.99 2.71
2485 3179 7.361542 GGAGCATCTTGATTATATTTGCGACAT 60.362 37.037 0.00 0.00 33.99 3.06
2487 3181 6.310197 GGAGCATCTTGATTATATTTGCGAC 58.690 40.000 0.00 0.00 33.99 5.19
2489 3183 5.634896 GGGAGCATCTTGATTATATTTGCG 58.365 41.667 0.00 0.00 33.99 4.85
2490 3184 5.392380 CCGGGAGCATCTTGATTATATTTGC 60.392 44.000 0.00 0.00 33.73 3.68
2491 3185 5.707298 ACCGGGAGCATCTTGATTATATTTG 59.293 40.000 6.32 0.00 33.73 2.32
2493 3187 5.248640 CACCGGGAGCATCTTGATTATATT 58.751 41.667 6.32 0.00 33.73 1.28
2494 3188 4.323792 CCACCGGGAGCATCTTGATTATAT 60.324 45.833 6.32 0.00 35.59 0.86
2495 3189 3.007940 CCACCGGGAGCATCTTGATTATA 59.992 47.826 6.32 0.00 35.59 0.98
2497 3191 1.140852 CCACCGGGAGCATCTTGATTA 59.859 52.381 6.32 0.00 35.59 1.75
2700 3700 5.221441 GGGAGTGACCAATTAGCAAAGTTTT 60.221 40.000 0.00 0.00 41.20 2.43
2817 3821 4.689612 ACCTGATGACCTAATTATGCGT 57.310 40.909 0.00 0.00 0.00 5.24
2876 3880 6.780522 ACATTAAACCTGGTGATTACTGGTTT 59.219 34.615 23.27 23.27 45.62 3.27
3095 4100 2.455674 TGATTGTTCACTGGTCTCCG 57.544 50.000 0.00 0.00 0.00 4.63
3307 4312 3.568007 GCCTAACAACATTCTTGTGGTCA 59.432 43.478 0.00 0.00 39.17 4.02
3308 4313 3.821033 AGCCTAACAACATTCTTGTGGTC 59.179 43.478 0.00 0.00 39.17 4.02
3418 4423 5.419471 TGCATCCAAAGAAATGTGATCATCA 59.581 36.000 0.00 0.00 32.56 3.07
3559 4564 4.349663 TCCAAAGTCGGATAATTTTGCG 57.650 40.909 3.49 3.49 31.03 4.85
3999 5005 4.749598 GGTTCACATTTTTCATTGACCACC 59.250 41.667 0.00 0.00 0.00 4.61
4041 5047 4.338682 ACATAGTAGAGTTAGAACTGGCGG 59.661 45.833 0.00 0.00 39.88 6.13
4042 5048 5.502153 ACATAGTAGAGTTAGAACTGGCG 57.498 43.478 0.00 0.00 39.88 5.69
4043 5049 7.571080 AGTACATAGTAGAGTTAGAACTGGC 57.429 40.000 0.00 0.00 39.88 4.85
4054 5060 7.986562 TGTTCAGCTTGTAGTACATAGTAGAG 58.013 38.462 3.28 0.00 0.00 2.43
4064 5070 4.217550 GCCCAAATTGTTCAGCTTGTAGTA 59.782 41.667 0.00 0.00 0.00 1.82
4065 5071 3.005791 GCCCAAATTGTTCAGCTTGTAGT 59.994 43.478 0.00 0.00 0.00 2.73
4066 5072 3.005684 TGCCCAAATTGTTCAGCTTGTAG 59.994 43.478 0.00 0.00 0.00 2.74
4098 5104 0.684153 ATTCCGGGGTGCATTCCAAG 60.684 55.000 0.00 4.66 0.00 3.61
4105 5111 0.038890 TCATGAAATTCCGGGGTGCA 59.961 50.000 0.00 0.00 0.00 4.57
4110 5116 1.670811 CGTTCCTCATGAAATTCCGGG 59.329 52.381 0.00 0.00 33.94 5.73
4112 5118 1.737236 TGCGTTCCTCATGAAATTCCG 59.263 47.619 0.00 0.00 33.94 4.30
4129 5135 1.409064 TGCTCTACTATTGGACCTGCG 59.591 52.381 0.00 0.00 0.00 5.18
4138 5144 6.434028 TCAGGTTTTGCATTTGCTCTACTATT 59.566 34.615 3.94 0.00 42.66 1.73
4140 5146 5.312895 TCAGGTTTTGCATTTGCTCTACTA 58.687 37.500 3.94 0.00 42.66 1.82
4147 5153 1.799544 CCCTCAGGTTTTGCATTTGC 58.200 50.000 0.00 0.00 42.50 3.68
4231 5237 5.513094 CCCTTTGTAGACCTCACAAGATGAA 60.513 44.000 0.00 0.00 37.22 2.57
4251 5257 2.104963 GTGTTGTCCTCAAGAGTCCCTT 59.895 50.000 0.00 0.00 33.97 3.95
4272 5278 5.468072 GTCTCTATATTCACTGCCACCAATG 59.532 44.000 0.00 0.00 0.00 2.82
4281 5287 4.294232 CACTGCGGTCTCTATATTCACTG 58.706 47.826 0.00 0.00 0.00 3.66
4282 5288 3.319405 CCACTGCGGTCTCTATATTCACT 59.681 47.826 0.00 0.00 0.00 3.41
4297 5303 0.179048 TATGGGCTTCATCCACTGCG 60.179 55.000 0.00 0.00 37.08 5.18
4299 5305 2.171237 TCACTATGGGCTTCATCCACTG 59.829 50.000 0.00 0.00 37.08 3.66
4300 5306 2.481441 TCACTATGGGCTTCATCCACT 58.519 47.619 0.00 0.00 37.08 4.00
4303 5312 3.073650 AGGATTCACTATGGGCTTCATCC 59.926 47.826 0.00 0.00 37.30 3.51
4322 5331 6.359804 AGATGAGCATGCTATTTGTAAAGGA 58.640 36.000 22.74 0.00 0.00 3.36
4323 5332 6.630444 AGATGAGCATGCTATTTGTAAAGG 57.370 37.500 22.74 0.00 0.00 3.11
4329 5338 6.812879 TGGAATAGATGAGCATGCTATTTG 57.187 37.500 22.74 0.00 35.58 2.32
4363 5372 8.924691 CAACCCAACAGTTTGATAATGTTATTG 58.075 33.333 0.00 0.00 35.47 1.90
4372 5381 6.039941 CCAAGTAACAACCCAACAGTTTGATA 59.960 38.462 0.00 0.00 34.24 2.15
4373 5382 5.163457 CCAAGTAACAACCCAACAGTTTGAT 60.163 40.000 0.00 0.00 34.24 2.57
4381 5390 1.611977 GCCTCCAAGTAACAACCCAAC 59.388 52.381 0.00 0.00 0.00 3.77
4394 5403 1.570857 ATTGGGACATCCGCCTCCAA 61.571 55.000 0.00 0.00 39.30 3.53
4429 5438 0.960364 GGAGATTCCCGTTTGCAGCA 60.960 55.000 0.00 0.00 0.00 4.41
4438 5447 0.394565 GGATGTCCTGGAGATTCCCG 59.605 60.000 7.86 0.00 35.03 5.14
4541 5550 1.545582 ACCCACAAATGCAAAGGATCG 59.454 47.619 0.00 0.00 0.00 3.69
4542 5551 2.932187 GCACCCACAAATGCAAAGGATC 60.932 50.000 0.00 0.00 41.65 3.36
4568 5577 1.665679 CAGTATGTTGGCGGATGTGAC 59.334 52.381 0.00 0.00 0.00 3.67
4574 5583 1.480789 TCTAGCAGTATGTTGGCGGA 58.519 50.000 0.00 0.00 39.31 5.54
4609 5618 2.364448 AGAGGCCCGGAGACCTTC 60.364 66.667 0.73 1.56 34.05 3.46
4618 5627 1.688735 TGACATATGAAGAGAGGCCCG 59.311 52.381 10.38 0.00 0.00 6.13
4623 5632 5.598769 TGATGCTGTGACATATGAAGAGAG 58.401 41.667 10.38 1.84 0.00 3.20
4640 5649 1.836166 ACCTGATGTGCTACTGATGCT 59.164 47.619 0.00 0.00 0.00 3.79
4658 5667 7.433680 AGAATTCCAAAACTGTAAACATCACC 58.566 34.615 0.65 0.00 0.00 4.02
4660 5669 7.505585 AGGAGAATTCCAAAACTGTAAACATCA 59.494 33.333 0.65 0.00 46.64 3.07
4670 5679 6.384015 AGTTCCAAAAGGAGAATTCCAAAACT 59.616 34.615 0.65 0.00 46.64 2.66
4672 5681 6.806668 AGTTCCAAAAGGAGAATTCCAAAA 57.193 33.333 0.65 0.00 46.64 2.44
4680 5689 6.946009 CCTGGTTATAAGTTCCAAAAGGAGAA 59.054 38.462 0.00 0.00 0.00 2.87
4687 5696 7.014808 CCTTGTTTCCTGGTTATAAGTTCCAAA 59.985 37.037 0.00 0.00 0.00 3.28
4763 5772 1.412343 GTCAAACATGGTGTGCCCTTT 59.588 47.619 0.00 0.00 0.00 3.11
4804 5813 8.966868 TGGATCCTTTCAAGTATTAAAATGTCC 58.033 33.333 14.23 0.00 0.00 4.02
4810 5819 8.336235 ACCATCTGGATCCTTTCAAGTATTAAA 58.664 33.333 14.23 0.00 38.94 1.52
4813 5822 6.332976 ACCATCTGGATCCTTTCAAGTATT 57.667 37.500 14.23 0.00 38.94 1.89
4867 5876 2.809174 GCCATTTTTGGTCGCGCC 60.809 61.111 0.00 6.97 37.90 6.53
4876 5885 0.971386 CTGCCACCTCTGCCATTTTT 59.029 50.000 0.00 0.00 0.00 1.94
4905 5914 4.518970 TGCTTTCGACATTTTTAAGCCTCT 59.481 37.500 11.96 0.00 40.25 3.69
4954 5963 1.745141 GCTACCAACCTCCTCAGCATG 60.745 57.143 0.00 0.00 37.54 4.06
4958 5967 1.208293 GGAAGCTACCAACCTCCTCAG 59.792 57.143 0.00 0.00 0.00 3.35
4972 5981 2.026449 AGCTTTGCTGATACTGGAAGCT 60.026 45.455 2.82 2.82 37.57 3.74
5029 6038 8.455682 GCAAAAATGAATGATCACAAATTCCAT 58.544 29.630 0.00 0.00 38.69 3.41
5031 6040 7.808672 TGCAAAAATGAATGATCACAAATTCC 58.191 30.769 0.00 0.00 38.69 3.01
5055 6064 2.222729 GCGTGCGTGGAGTAGTAAATTG 60.223 50.000 0.00 0.00 0.00 2.32
5096 6120 3.187637 CAGAAACAGCAATGCCAAATTGG 59.812 43.478 7.84 7.84 41.55 3.16
5113 6137 3.055891 TCTCAATGCCGATCTGACAGAAA 60.056 43.478 9.70 0.00 0.00 2.52
5116 6140 2.471818 CTCTCAATGCCGATCTGACAG 58.528 52.381 0.00 0.00 0.00 3.51
5117 6141 1.472201 GCTCTCAATGCCGATCTGACA 60.472 52.381 0.00 0.00 0.00 3.58
5119 6143 1.117994 AGCTCTCAATGCCGATCTGA 58.882 50.000 0.00 0.00 0.00 3.27
5120 6144 1.865970 GAAGCTCTCAATGCCGATCTG 59.134 52.381 0.00 0.00 0.00 2.90
5121 6145 1.202627 GGAAGCTCTCAATGCCGATCT 60.203 52.381 0.00 0.00 0.00 2.75
5122 6146 1.224965 GGAAGCTCTCAATGCCGATC 58.775 55.000 0.00 0.00 0.00 3.69
5123 6147 0.179034 GGGAAGCTCTCAATGCCGAT 60.179 55.000 0.00 0.00 0.00 4.18
5124 6148 1.221840 GGGAAGCTCTCAATGCCGA 59.778 57.895 0.00 0.00 0.00 5.54
5150 6174 1.610886 GCTACTTGCCGGGGGATTATC 60.611 57.143 2.18 0.00 35.15 1.75
5189 6213 4.088634 AGGTTGATTTTATGCAAGCCAGA 58.911 39.130 0.00 0.00 41.90 3.86
5190 6214 4.159135 AGAGGTTGATTTTATGCAAGCCAG 59.841 41.667 0.00 0.00 41.90 4.85
5192 6216 4.427312 CAGAGGTTGATTTTATGCAAGCC 58.573 43.478 0.00 0.00 41.90 4.35
5223 6247 1.740025 GCAAGAGTACTGAATGGGTGC 59.260 52.381 0.00 0.00 0.00 5.01
5259 6283 2.190161 GGTTGGCGTTTCTTGACAAAC 58.810 47.619 0.00 0.00 35.79 2.93
5272 6296 1.782044 CTTGGAAAACATGGTTGGCG 58.218 50.000 0.00 0.00 0.00 5.69
5278 6302 2.836262 TGCTTTGCTTGGAAAACATGG 58.164 42.857 0.00 0.00 0.00 3.66
5292 6316 5.063180 TGCATCTGATTAACCTTGCTTTG 57.937 39.130 0.00 0.00 0.00 2.77
5306 6330 2.092753 GGATTGGGAGACTTGCATCTGA 60.093 50.000 0.00 0.00 0.00 3.27
5317 6341 1.614711 GTGGCATGGGATTGGGAGA 59.385 57.895 0.00 0.00 0.00 3.71
5336 6360 1.000385 TGGCAACTCCGAAATGCAAAG 60.000 47.619 0.00 0.00 41.80 2.77
5355 6379 2.622436 GAGCAACCTAGCAACTACCTG 58.378 52.381 0.00 0.00 36.85 4.00
5356 6380 1.555533 GGAGCAACCTAGCAACTACCT 59.444 52.381 0.00 0.00 36.85 3.08
5357 6381 1.278127 TGGAGCAACCTAGCAACTACC 59.722 52.381 1.91 0.00 39.86 3.18
5358 6382 2.622436 CTGGAGCAACCTAGCAACTAC 58.378 52.381 1.91 0.00 39.86 2.73
5359 6383 1.555075 CCTGGAGCAACCTAGCAACTA 59.445 52.381 0.00 0.00 39.86 2.24
5360 6384 0.326264 CCTGGAGCAACCTAGCAACT 59.674 55.000 0.00 0.00 39.86 3.16
5361 6385 0.324943 TCCTGGAGCAACCTAGCAAC 59.675 55.000 0.00 0.00 39.86 4.17
5362 6386 0.324943 GTCCTGGAGCAACCTAGCAA 59.675 55.000 0.00 0.00 39.86 3.91
5363 6387 0.835971 TGTCCTGGAGCAACCTAGCA 60.836 55.000 0.00 0.00 39.86 3.49
5364 6388 0.391793 GTGTCCTGGAGCAACCTAGC 60.392 60.000 0.00 0.00 39.86 3.42
5365 6389 0.250513 GGTGTCCTGGAGCAACCTAG 59.749 60.000 13.40 0.00 39.86 3.02
5366 6390 1.198759 GGGTGTCCTGGAGCAACCTA 61.199 60.000 19.75 0.00 39.29 3.08
5367 6391 2.529744 GGGTGTCCTGGAGCAACCT 61.530 63.158 19.75 0.00 39.29 3.50
5383 6407 2.227388 GACAAGAAATCAGTGCACTGGG 59.773 50.000 39.04 20.83 43.91 4.45
5414 6438 7.507797 TCCCATGGTGAAATATTTTTGGATT 57.492 32.000 11.73 0.00 0.00 3.01
5415 6439 7.695074 ATCCCATGGTGAAATATTTTTGGAT 57.305 32.000 11.73 0.04 0.00 3.41
5430 6454 8.387813 TGTAAGAGTTTTAACTTATCCCATGGT 58.612 33.333 11.73 0.00 39.88 3.55
5479 6503 4.130118 GGTCATTCAGGCAATTCGAGTAT 58.870 43.478 0.00 0.00 0.00 2.12
5533 6571 5.006386 AGGGATGTTCTGAAAAACTGCTAG 58.994 41.667 0.00 0.00 0.00 3.42
5541 6579 4.656100 TGATCCAGGGATGTTCTGAAAA 57.344 40.909 5.35 0.00 34.60 2.29
5542 6580 4.868172 ATGATCCAGGGATGTTCTGAAA 57.132 40.909 5.35 0.00 34.60 2.69
5543 6581 4.385643 GGAATGATCCAGGGATGTTCTGAA 60.386 45.833 5.35 0.00 45.79 3.02
5544 6582 3.137176 GGAATGATCCAGGGATGTTCTGA 59.863 47.826 5.35 0.00 45.79 3.27
5545 6583 3.484407 GGAATGATCCAGGGATGTTCTG 58.516 50.000 5.35 0.00 45.79 3.02
5546 6584 3.872459 GGAATGATCCAGGGATGTTCT 57.128 47.619 5.35 0.00 45.79 3.01
5557 6595 4.218417 GTGAGAGAGCTAGAGGAATGATCC 59.782 50.000 0.00 0.00 46.98 3.36
5558 6596 4.083324 CGTGAGAGAGCTAGAGGAATGATC 60.083 50.000 0.00 0.00 0.00 2.92
5559 6597 3.820467 CGTGAGAGAGCTAGAGGAATGAT 59.180 47.826 0.00 0.00 0.00 2.45
5560 6598 3.210227 CGTGAGAGAGCTAGAGGAATGA 58.790 50.000 0.00 0.00 0.00 2.57
5561 6599 2.293122 CCGTGAGAGAGCTAGAGGAATG 59.707 54.545 0.00 0.00 0.00 2.67
5562 6600 2.173782 TCCGTGAGAGAGCTAGAGGAAT 59.826 50.000 0.00 0.00 0.00 3.01
5563 6601 1.560146 TCCGTGAGAGAGCTAGAGGAA 59.440 52.381 0.00 0.00 0.00 3.36
5564 6602 1.205055 TCCGTGAGAGAGCTAGAGGA 58.795 55.000 0.00 0.00 0.00 3.71
5565 6603 1.879380 CATCCGTGAGAGAGCTAGAGG 59.121 57.143 0.00 0.00 0.00 3.69
5566 6604 2.290367 CACATCCGTGAGAGAGCTAGAG 59.710 54.545 0.00 0.00 46.80 2.43
5567 6605 2.293170 CACATCCGTGAGAGAGCTAGA 58.707 52.381 0.00 0.00 46.80 2.43
5568 6606 1.336440 CCACATCCGTGAGAGAGCTAG 59.664 57.143 0.00 0.00 46.80 3.42
5569 6607 1.341089 ACCACATCCGTGAGAGAGCTA 60.341 52.381 0.00 0.00 46.80 3.32
5570 6608 0.613292 ACCACATCCGTGAGAGAGCT 60.613 55.000 0.00 0.00 46.80 4.09
5571 6609 0.179124 GACCACATCCGTGAGAGAGC 60.179 60.000 0.00 0.00 46.80 4.09
5572 6610 0.099613 CGACCACATCCGTGAGAGAG 59.900 60.000 0.00 0.00 46.80 3.20
5573 6611 0.322187 TCGACCACATCCGTGAGAGA 60.322 55.000 0.00 0.00 46.80 3.10
5574 6612 0.526211 TTCGACCACATCCGTGAGAG 59.474 55.000 0.00 0.00 46.80 3.20
5575 6613 0.242825 GTTCGACCACATCCGTGAGA 59.757 55.000 0.00 0.00 46.80 3.27
5576 6614 1.071019 CGTTCGACCACATCCGTGAG 61.071 60.000 0.00 0.00 46.80 3.51
5583 6621 2.358247 GGGCACGTTCGACCACAT 60.358 61.111 0.00 0.00 0.00 3.21
5600 6638 2.287427 CGCAGTGGGTCGTATTACTAGG 60.287 54.545 0.00 0.00 0.00 3.02
5608 6646 2.048023 CCTACCGCAGTGGGTCGTA 61.048 63.158 4.64 1.75 44.64 3.43
5609 6647 3.379445 CCTACCGCAGTGGGTCGT 61.379 66.667 4.64 0.58 44.64 4.34
5620 6658 2.368875 AGATACTTGGGCATTCCTACCG 59.631 50.000 0.00 0.00 36.20 4.02
5629 6668 2.176045 TCAACGAGAGATACTTGGGCA 58.824 47.619 0.00 0.00 34.46 5.36
5632 6671 3.190874 GCCTTCAACGAGAGATACTTGG 58.809 50.000 0.00 0.00 34.46 3.61
5657 6696 2.957402 AGTCAGCATTCCTGGTTGAA 57.043 45.000 0.00 0.00 42.05 2.69
5658 6697 2.553028 GGAAGTCAGCATTCCTGGTTGA 60.553 50.000 0.00 0.00 42.52 3.18
5659 6698 1.815003 GGAAGTCAGCATTCCTGGTTG 59.185 52.381 0.00 0.00 42.52 3.77
5660 6699 1.272147 GGGAAGTCAGCATTCCTGGTT 60.272 52.381 4.83 0.00 44.75 3.67
5661 6700 0.329596 GGGAAGTCAGCATTCCTGGT 59.670 55.000 4.83 0.00 44.75 4.00
5662 6701 0.394899 GGGGAAGTCAGCATTCCTGG 60.395 60.000 4.83 0.00 44.75 4.45
5663 6702 0.329261 TGGGGAAGTCAGCATTCCTG 59.671 55.000 4.83 0.00 44.75 3.86
5664 6703 1.075601 TTGGGGAAGTCAGCATTCCT 58.924 50.000 4.83 0.00 44.75 3.36
5670 6709 0.394899 CTGGGATTGGGGAAGTCAGC 60.395 60.000 0.00 0.00 0.00 4.26
5702 6741 2.157668 GTGAGTTGCTGTGTATGAACGG 59.842 50.000 0.00 0.00 0.00 4.44
5706 6745 3.321968 AGAGTGTGAGTTGCTGTGTATGA 59.678 43.478 0.00 0.00 0.00 2.15
5722 6761 3.142174 GCTGGAGCTGTTAAAAGAGTGT 58.858 45.455 0.00 0.00 38.21 3.55
5726 6765 2.154462 GCTGCTGGAGCTGTTAAAAGA 58.846 47.619 14.33 0.00 45.21 2.52
5745 6784 1.334556 TGAATAATGCTGTGGCGATGC 59.665 47.619 0.00 0.00 42.25 3.91
5747 6786 3.753272 GGTATGAATAATGCTGTGGCGAT 59.247 43.478 0.00 0.00 42.25 4.58
5748 6787 3.138304 GGTATGAATAATGCTGTGGCGA 58.862 45.455 0.00 0.00 42.25 5.54
5750 6789 3.304928 GCTGGTATGAATAATGCTGTGGC 60.305 47.826 0.00 0.00 39.26 5.01
5752 6791 4.139786 AGGCTGGTATGAATAATGCTGTG 58.860 43.478 0.00 0.00 0.00 3.66
5794 6845 0.601558 TGTCCTGTACAAGCGTCCTC 59.398 55.000 0.00 0.00 34.29 3.71
5798 6849 1.269998 GAGACTGTCCTGTACAAGCGT 59.730 52.381 3.76 0.00 37.74 5.07
5849 6900 2.704190 TCTCTGAGGTCTGGGTTCTT 57.296 50.000 4.59 0.00 0.00 2.52
5852 6903 2.938428 AGATCTCTGAGGTCTGGGTT 57.062 50.000 19.29 0.00 0.00 4.11
5930 6981 0.835941 AGCTCCAAGAATCGGCATCT 59.164 50.000 0.00 0.00 0.00 2.90
5951 7002 0.603569 TCTCCACCAGCGAAAGAGAC 59.396 55.000 0.00 0.00 0.00 3.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.