Multiple sequence alignment - TraesCS7D01G147800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G147800 chr7D 100.000 3943 0 0 2425 6367 94503508 94507450 0.000000e+00 7282.0
1 TraesCS7D01G147800 chr7D 100.000 2024 0 0 1 2024 94501084 94503107 0.000000e+00 3738.0
2 TraesCS7D01G147800 chr7D 83.962 318 39 8 5042 5351 94940254 94940567 1.740000e-75 294.0
3 TraesCS7D01G147800 chr7D 85.149 101 9 5 795 893 91118534 91118630 1.460000e-16 99.0
4 TraesCS7D01G147800 chr7B 95.521 3170 102 16 2425 5570 48766418 48769571 0.000000e+00 5031.0
5 TraesCS7D01G147800 chr7B 88.369 791 45 16 5607 6367 48769573 48770346 0.000000e+00 907.0
6 TraesCS7D01G147800 chr7B 84.505 768 47 33 891 1620 48759917 48760650 0.000000e+00 693.0
7 TraesCS7D01G147800 chr7B 84.299 777 47 33 891 1626 48755076 48755818 0.000000e+00 689.0
8 TraesCS7D01G147800 chr7B 84.245 768 49 33 891 1620 48761826 48762559 0.000000e+00 682.0
9 TraesCS7D01G147800 chr7B 84.698 745 42 33 891 1597 48765074 48765784 0.000000e+00 678.0
10 TraesCS7D01G147800 chr7B 84.115 768 50 30 891 1620 48756588 48757321 0.000000e+00 676.0
11 TraesCS7D01G147800 chr7B 84.211 760 48 30 891 1612 48763517 48764242 0.000000e+00 673.0
12 TraesCS7D01G147800 chr7B 83.984 768 51 30 891 1620 48758096 48758829 0.000000e+00 671.0
13 TraesCS7D01G147800 chr7B 83.763 776 51 34 891 1626 48753568 48754308 0.000000e+00 665.0
14 TraesCS7D01G147800 chr7B 90.378 291 27 1 1626 1916 48765928 48766217 1.300000e-101 381.0
15 TraesCS7D01G147800 chr7B 80.670 388 56 12 150 522 48731163 48731546 3.760000e-72 283.0
16 TraesCS7D01G147800 chr7B 83.019 318 36 11 220 523 48754494 48754807 8.130000e-69 272.0
17 TraesCS7D01G147800 chr7B 82.704 318 37 11 220 523 48762934 48763247 3.780000e-67 267.0
18 TraesCS7D01G147800 chr7B 82.704 318 37 11 220 523 48764492 48764805 3.780000e-67 267.0
19 TraesCS7D01G147800 chr7B 82.390 318 38 11 220 523 48756005 48756318 1.760000e-65 261.0
20 TraesCS7D01G147800 chr7B 82.334 317 40 9 220 523 48759335 48759648 1.760000e-65 261.0
21 TraesCS7D01G147800 chr7B 82.390 318 38 11 220 523 48761244 48761557 1.760000e-65 261.0
22 TraesCS7D01G147800 chr7B 82.390 318 37 12 220 523 48757514 48757826 6.330000e-65 259.0
23 TraesCS7D01G147800 chr7B 79.580 333 41 14 5042 5351 49035144 49035472 5.000000e-51 213.0
24 TraesCS7D01G147800 chr7B 82.911 158 13 10 1463 1620 48760733 48760876 5.180000e-26 130.0
25 TraesCS7D01G147800 chr7B 97.059 68 2 0 1917 1984 48766252 48766319 1.450000e-21 115.0
26 TraesCS7D01G147800 chr7B 85.859 99 12 2 795 893 721591251 721591347 3.140000e-18 104.0
27 TraesCS7D01G147800 chr7B 85.333 75 8 3 547 621 482065400 482065329 2.460000e-09 75.0
28 TraesCS7D01G147800 chr7A 85.928 803 90 10 65 848 97904176 97904974 0.000000e+00 835.0
29 TraesCS7D01G147800 chr7A 91.986 287 23 0 2425 2711 727796007 727795721 2.760000e-108 403.0
30 TraesCS7D01G147800 chr7A 84.416 308 37 7 5051 5351 98549251 98549554 6.240000e-75 292.0
31 TraesCS7D01G147800 chr2D 93.380 287 19 0 2425 2711 644208401 644208687 5.900000e-115 425.0
32 TraesCS7D01G147800 chr1D 90.311 289 23 5 2425 2711 355517630 355517345 2.170000e-99 374.0
33 TraesCS7D01G147800 chr6A 89.199 287 25 3 2425 2711 557420277 557420557 2.820000e-93 353.0
34 TraesCS7D01G147800 chrUn 89.238 223 20 2 2428 2650 90462484 90462266 6.290000e-70 276.0
35 TraesCS7D01G147800 chrUn 84.848 99 13 2 795 893 17264567 17264471 1.460000e-16 99.0
36 TraesCS7D01G147800 chrUn 83.838 99 14 2 795 893 75380952 75380856 6.800000e-15 93.5
37 TraesCS7D01G147800 chrUn 83.838 99 14 2 795 893 311940278 311940374 6.800000e-15 93.5
38 TraesCS7D01G147800 chr1B 86.275 102 7 6 795 893 118527654 118527751 3.140000e-18 104.0
39 TraesCS7D01G147800 chr6D 85.000 100 13 2 794 893 458063885 458063982 4.060000e-17 100.0
40 TraesCS7D01G147800 chr5A 84.848 99 13 2 795 893 522113899 522113995 1.460000e-16 99.0
41 TraesCS7D01G147800 chr5B 82.692 104 16 1 794 897 554511077 554511178 2.440000e-14 91.6
42 TraesCS7D01G147800 chr2A 81.720 93 13 4 705 794 775732024 775732115 2.460000e-09 75.0
43 TraesCS7D01G147800 chr4A 100.000 29 0 0 5491 5519 618116556 618116584 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G147800 chr7D 94501084 94507450 6366 False 5510.00 7282 100.00000 1 6367 2 chr7D.!!$F3 6366
1 TraesCS7D01G147800 chr7B 48753568 48770346 16778 False 691.95 5031 85.29945 220 6367 20 chr7B.!!$F4 6147
2 TraesCS7D01G147800 chr7A 97904176 97904974 798 False 835.00 835 85.92800 65 848 1 chr7A.!!$F1 783

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
19 20 0.039978 CCTATGCTCCTGCTACGACG 60.040 60.000 0.00 0.00 40.48 5.12 F
1382 10447 0.037590 TGGTTCTTCATGGGGTTCGG 59.962 55.000 0.00 0.00 0.00 4.30 F
1986 12778 0.179000 GGCTGTGGTGAGATGGGTAG 59.821 60.000 0.00 0.00 0.00 3.18 F
2019 12811 0.392863 TACGGTAGGAGCGCACTGTA 60.393 55.000 11.47 11.77 43.79 2.74 F
2021 12813 0.525668 CGGTAGGAGCGCACTGTAAG 60.526 60.000 11.47 0.00 33.38 2.34 F
2928 13725 0.661187 GGTGAAGTGCGTGCAATGTG 60.661 55.000 0.00 0.00 0.00 3.21 F
3468 14265 1.207089 CTGTGATTAGGGACCGCTGAA 59.793 52.381 0.00 0.00 0.00 3.02 F
4046 14845 0.678048 GTCACCCTCCTGCATGGTTC 60.678 60.000 0.00 0.00 37.07 3.62 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1977 12769 0.104934 AATCTCCCGGCTACCCATCT 60.105 55.000 0.00 0.0 0.00 2.90 R
2662 13459 0.467844 AGGCCAGCACATCACAAACA 60.468 50.000 5.01 0.0 0.00 2.83 R
3516 14313 1.342074 TCCTGCACTTCTAGCACTGT 58.658 50.000 0.00 0.0 37.02 3.55 R
3679 14476 1.380403 CGCCCACCAACAACACTCAA 61.380 55.000 0.00 0.0 0.00 3.02 R
4009 14808 4.503296 GGTGACAGCCGGATGTTTATCTAT 60.503 45.833 28.52 0.0 32.25 1.98 R
4025 14824 1.077930 CCATGCAGGAGGGTGACAG 60.078 63.158 0.00 0.0 41.22 3.51 R
5195 15998 0.531532 ATGCCGATTCTTGGAGCTCG 60.532 55.000 7.83 0.0 0.00 5.03 R
5782 16612 0.320374 TCGGAGTTGCCAGGTAGTTG 59.680 55.000 0.00 0.0 35.94 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.875838 CCTATGCTCCTGCTACGAC 57.124 57.895 0.00 0.00 40.48 4.34
19 20 0.039978 CCTATGCTCCTGCTACGACG 60.040 60.000 0.00 0.00 40.48 5.12
20 21 0.039978 CTATGCTCCTGCTACGACGG 60.040 60.000 0.00 0.00 40.48 4.79
21 22 1.452953 TATGCTCCTGCTACGACGGG 61.453 60.000 0.00 0.00 40.48 5.28
22 23 4.874977 GCTCCTGCTACGACGGGC 62.875 72.222 0.00 3.86 35.90 6.13
23 24 3.141488 CTCCTGCTACGACGGGCT 61.141 66.667 14.25 0.00 35.90 5.19
24 25 2.678934 TCCTGCTACGACGGGCTT 60.679 61.111 14.25 0.00 35.90 4.35
26 27 2.579787 CTGCTACGACGGGCTTCG 60.580 66.667 14.25 7.38 44.87 3.79
27 28 4.124351 TGCTACGACGGGCTTCGG 62.124 66.667 14.25 0.00 43.58 4.30
28 29 4.867599 GCTACGACGGGCTTCGGG 62.868 72.222 12.49 6.87 43.58 5.14
29 30 4.203076 CTACGACGGGCTTCGGGG 62.203 72.222 12.49 2.79 43.58 5.73
33 34 3.393106 GACGGGCTTCGGGGGTTA 61.393 66.667 5.17 0.00 44.45 2.85
34 35 2.929477 ACGGGCTTCGGGGGTTAA 60.929 61.111 5.17 0.00 44.45 2.01
35 36 2.261430 GACGGGCTTCGGGGGTTAAT 62.261 60.000 5.17 0.00 44.45 1.40
38 39 0.750546 GGGCTTCGGGGGTTAATGAC 60.751 60.000 0.00 0.00 0.00 3.06
40 41 0.108041 GCTTCGGGGGTTAATGACGA 60.108 55.000 0.00 0.00 0.00 4.20
42 43 2.210116 CTTCGGGGGTTAATGACGATG 58.790 52.381 0.00 0.00 33.26 3.84
43 44 0.466543 TCGGGGGTTAATGACGATGG 59.533 55.000 0.00 0.00 0.00 3.51
44 45 0.179468 CGGGGGTTAATGACGATGGT 59.821 55.000 0.00 0.00 0.00 3.55
45 46 1.675552 GGGGGTTAATGACGATGGTG 58.324 55.000 0.00 0.00 0.00 4.17
46 47 1.210967 GGGGGTTAATGACGATGGTGA 59.789 52.381 0.00 0.00 0.00 4.02
47 48 2.356330 GGGGGTTAATGACGATGGTGAA 60.356 50.000 0.00 0.00 0.00 3.18
48 49 3.349022 GGGGTTAATGACGATGGTGAAA 58.651 45.455 0.00 0.00 0.00 2.69
86 87 0.821711 TCTTTGGGGCGTTGTCTTGG 60.822 55.000 0.00 0.00 0.00 3.61
87 88 0.821711 CTTTGGGGCGTTGTCTTGGA 60.822 55.000 0.00 0.00 0.00 3.53
88 89 0.178975 TTTGGGGCGTTGTCTTGGAT 60.179 50.000 0.00 0.00 0.00 3.41
94 95 1.079503 GCGTTGTCTTGGATCTGACC 58.920 55.000 10.04 0.00 32.67 4.02
95 96 1.350193 CGTTGTCTTGGATCTGACCG 58.650 55.000 10.04 5.52 32.67 4.79
102 103 1.202582 CTTGGATCTGACCGTCGTTCT 59.797 52.381 0.00 0.00 0.00 3.01
110 111 1.058404 GACCGTCGTTCTTTTCCTCG 58.942 55.000 0.00 0.00 0.00 4.63
144 145 5.755861 GGAAACCATATGTTAGACTCTCTGC 59.244 44.000 1.24 0.00 35.67 4.26
146 147 5.782893 ACCATATGTTAGACTCTCTGCTC 57.217 43.478 1.24 0.00 0.00 4.26
148 149 4.517075 CCATATGTTAGACTCTCTGCTCGA 59.483 45.833 1.24 0.00 0.00 4.04
151 152 3.146847 TGTTAGACTCTCTGCTCGACAA 58.853 45.455 0.00 0.00 0.00 3.18
176 177 1.827245 GCCACAAATTTGTCCCCTCCT 60.827 52.381 20.85 0.00 39.91 3.69
187 188 2.660064 CCCCTCCTTGGAGGTGTCG 61.660 68.421 28.15 15.96 40.69 4.35
199 200 2.979130 GGTGTCGCCTAAGATGCTC 58.021 57.895 0.00 0.00 0.00 4.26
200 201 0.175760 GGTGTCGCCTAAGATGCTCA 59.824 55.000 0.00 0.00 0.00 4.26
212 213 1.761784 AGATGCTCATGGAGTCCTCAC 59.238 52.381 11.33 0.00 31.39 3.51
216 217 1.857965 CTCATGGAGTCCTCACCAGA 58.142 55.000 11.33 0.00 37.70 3.86
217 218 1.755959 CTCATGGAGTCCTCACCAGAG 59.244 57.143 11.33 4.95 37.70 3.35
218 219 1.359130 TCATGGAGTCCTCACCAGAGA 59.641 52.381 11.33 0.00 44.98 3.10
219 220 1.755959 CATGGAGTCCTCACCAGAGAG 59.244 57.143 11.33 0.00 44.98 3.20
221 222 1.643286 TGGAGTCCTCACCAGAGAGAT 59.357 52.381 11.33 0.00 44.98 2.75
222 223 2.031120 GGAGTCCTCACCAGAGAGATG 58.969 57.143 0.41 0.00 44.98 2.90
223 224 2.622977 GGAGTCCTCACCAGAGAGATGT 60.623 54.545 0.41 0.00 44.98 3.06
238 946 4.684724 AGAGATGTAGTTAGGGTTGGTCA 58.315 43.478 0.00 0.00 0.00 4.02
277 986 2.039418 TCTAGGCGCAATGTACTCCAT 58.961 47.619 10.83 0.00 34.36 3.41
312 1021 6.114187 TCCTTGATAACTTCTTCTTCAGCA 57.886 37.500 0.00 0.00 0.00 4.41
324 1033 1.821061 CTTCAGCACCGACCAGACCT 61.821 60.000 0.00 0.00 0.00 3.85
339 1048 0.247736 GACCTTGTCATCCACTCGCT 59.752 55.000 0.00 0.00 32.09 4.93
346 1055 2.423892 TGTCATCCACTCGCTAACTCTC 59.576 50.000 0.00 0.00 0.00 3.20
349 1058 3.118000 TCATCCACTCGCTAACTCTCCTA 60.118 47.826 0.00 0.00 0.00 2.94
350 1059 2.920524 TCCACTCGCTAACTCTCCTAG 58.079 52.381 0.00 0.00 0.00 3.02
352 1061 2.645802 CACTCGCTAACTCTCCTAGGT 58.354 52.381 9.08 0.00 0.00 3.08
353 1062 2.356382 CACTCGCTAACTCTCCTAGGTG 59.644 54.545 9.08 6.58 0.00 4.00
354 1063 1.335496 CTCGCTAACTCTCCTAGGTGC 59.665 57.143 9.08 2.76 0.00 5.01
374 1085 0.332632 ATGGATGAGGGGTGTGTTGG 59.667 55.000 0.00 0.00 0.00 3.77
419 2641 2.617308 CGCTATAGAGGTCTTCCGACAA 59.383 50.000 3.21 0.00 42.05 3.18
428 2651 1.459592 GTCTTCCGACAACGATTGTGG 59.540 52.381 7.89 6.92 45.52 4.17
433 2656 1.440353 GACAACGATTGTGGCACGC 60.440 57.895 13.77 4.03 45.52 5.34
434 2657 1.841663 GACAACGATTGTGGCACGCT 61.842 55.000 13.77 1.85 45.52 5.07
511 2745 8.380099 AGATGTGGTTAAAAGAATAGTGGTGTA 58.620 33.333 0.00 0.00 0.00 2.90
526 2760 3.886505 GTGGTGTAATGGTCAAAAGGTGA 59.113 43.478 0.00 0.00 0.00 4.02
535 2769 2.277084 GTCAAAAGGTGACGTGTCTGT 58.723 47.619 0.00 0.00 46.99 3.41
536 2770 2.284417 GTCAAAAGGTGACGTGTCTGTC 59.716 50.000 0.00 0.00 46.99 3.51
537 2771 1.257936 CAAAAGGTGACGTGTCTGTCG 59.742 52.381 0.00 0.00 41.87 4.35
538 2772 0.742505 AAAGGTGACGTGTCTGTCGA 59.257 50.000 0.00 0.00 41.87 4.20
539 2773 0.742505 AAGGTGACGTGTCTGTCGAA 59.257 50.000 0.00 0.00 41.87 3.71
540 2774 0.311165 AGGTGACGTGTCTGTCGAAG 59.689 55.000 0.00 0.00 41.87 3.79
541 2775 0.309922 GGTGACGTGTCTGTCGAAGA 59.690 55.000 0.00 0.00 41.87 2.87
542 2776 1.268896 GGTGACGTGTCTGTCGAAGAA 60.269 52.381 0.00 0.00 41.87 2.52
543 2777 2.607282 GGTGACGTGTCTGTCGAAGAAT 60.607 50.000 0.00 0.00 41.87 2.40
544 2778 2.405357 GTGACGTGTCTGTCGAAGAATG 59.595 50.000 0.00 0.00 41.87 2.67
576 2846 5.178797 AGTTGGACATGAGATTTTAGGTCG 58.821 41.667 0.00 0.00 0.00 4.79
595 2868 7.448748 AGGTCGTCAATTTAACTAGCAAAAT 57.551 32.000 0.00 0.00 0.00 1.82
649 2922 9.547753 AGTATTGATTCATATTAGTTGTCGCTT 57.452 29.630 0.00 0.00 0.00 4.68
661 2934 4.901868 AGTTGTCGCTTAAAGGGATGTAA 58.098 39.130 0.00 0.00 39.44 2.41
666 2939 6.646267 TGTCGCTTAAAGGGATGTAAGTATT 58.354 36.000 0.00 0.00 39.44 1.89
672 2945 8.343366 GCTTAAAGGGATGTAAGTATTTAGCAC 58.657 37.037 0.00 0.00 31.24 4.40
683 2956 8.836413 TGTAAGTATTTAGCACTGAAATATGCC 58.164 33.333 0.00 0.00 43.12 4.40
686 2959 9.799106 AAGTATTTAGCACTGAAATATGCCTAT 57.201 29.630 0.00 0.00 43.12 2.57
693 2966 8.728337 AGCACTGAAATATGCCTATATACATG 57.272 34.615 0.00 0.00 43.12 3.21
702 2975 9.453572 AATATGCCTATATACATGTGTTTCAGG 57.546 33.333 9.11 10.05 0.00 3.86
800 4523 7.009179 TGATAGTCAAATTGAAGAGAGGTGT 57.991 36.000 0.00 0.00 0.00 4.16
816 4539 4.015918 AGAGGTGTTCATAGGGGTAAGGTA 60.016 45.833 0.00 0.00 0.00 3.08
820 4543 3.070446 TGTTCATAGGGGTAAGGTATGCG 59.930 47.826 0.00 0.00 0.00 4.73
827 4550 2.103601 GGGGTAAGGTATGCGTATGTGT 59.896 50.000 0.00 0.00 0.00 3.72
830 4553 5.166398 GGGTAAGGTATGCGTATGTGTATC 58.834 45.833 0.00 0.00 0.00 2.24
835 4558 6.791867 AGGTATGCGTATGTGTATCCATAT 57.208 37.500 0.00 0.00 30.47 1.78
840 4563 9.399403 GTATGCGTATGTGTATCCATATAGATG 57.601 37.037 0.00 0.00 30.47 2.90
882 6306 2.882927 AACGCTTGTGTCTGTACTGA 57.117 45.000 0.00 0.00 0.00 3.41
883 6307 3.386768 AACGCTTGTGTCTGTACTGAT 57.613 42.857 5.69 0.00 0.00 2.90
884 6308 2.677199 ACGCTTGTGTCTGTACTGATG 58.323 47.619 5.69 0.00 0.00 3.07
910 6375 5.897377 AAAAACTTACATTCCCATCGGAG 57.103 39.130 0.00 0.00 40.10 4.63
914 6379 3.067742 ACTTACATTCCCATCGGAGTACG 59.932 47.826 0.00 0.00 40.10 3.67
925 6390 3.116079 TCGGAGTACGCCTTTTCTTTT 57.884 42.857 14.12 0.00 43.86 2.27
926 6391 3.062042 TCGGAGTACGCCTTTTCTTTTC 58.938 45.455 14.12 0.00 43.86 2.29
932 6397 3.369546 ACGCCTTTTCTTTTCATGGTG 57.630 42.857 0.00 0.00 0.00 4.17
939 6404 6.518200 GCCTTTTCTTTTCATGGTGTATTCCA 60.518 38.462 0.00 0.00 42.01 3.53
940 6405 7.092716 CCTTTTCTTTTCATGGTGTATTCCAG 58.907 38.462 0.00 0.00 41.05 3.86
941 6406 7.039784 CCTTTTCTTTTCATGGTGTATTCCAGA 60.040 37.037 0.00 0.00 41.05 3.86
942 6407 7.452880 TTTCTTTTCATGGTGTATTCCAGAG 57.547 36.000 0.00 0.00 41.05 3.35
943 6408 6.373005 TCTTTTCATGGTGTATTCCAGAGA 57.627 37.500 0.00 0.00 41.05 3.10
946 6411 7.723616 TCTTTTCATGGTGTATTCCAGAGAAAA 59.276 33.333 18.41 18.41 43.97 2.29
948 6413 6.817765 TCATGGTGTATTCCAGAGAAAAAC 57.182 37.500 0.00 0.00 41.05 2.43
949 6414 6.303054 TCATGGTGTATTCCAGAGAAAAACA 58.697 36.000 0.00 0.00 41.05 2.83
950 6415 6.947733 TCATGGTGTATTCCAGAGAAAAACAT 59.052 34.615 0.00 0.00 41.05 2.71
957 6422 8.690884 TGTATTCCAGAGAAAAACATTTGACAA 58.309 29.630 0.00 0.00 35.09 3.18
1043 8403 4.996434 GCTGTCAGCCTGGCACGT 62.996 66.667 22.65 0.00 34.48 4.49
1046 8406 2.809601 GTCAGCCTGGCACGTACG 60.810 66.667 22.65 15.01 0.00 3.67
1047 8407 2.986979 TCAGCCTGGCACGTACGA 60.987 61.111 24.41 4.23 0.00 3.43
1048 8408 2.809601 CAGCCTGGCACGTACGAC 60.810 66.667 24.41 13.30 0.00 4.34
1049 8409 2.989824 AGCCTGGCACGTACGACT 60.990 61.111 24.41 0.00 0.00 4.18
1050 8410 2.506438 GCCTGGCACGTACGACTC 60.506 66.667 24.41 10.61 0.00 3.36
1080 8447 1.282248 ACAAGATGTTCGTGCGGTCG 61.282 55.000 0.00 0.00 28.70 4.79
1207 8574 3.338250 GGTCCAGGTCCATGGCCA 61.338 66.667 22.33 8.56 40.41 5.36
1293 10351 3.252351 CCTCCCTCCCCCTCTTATTAAG 58.748 54.545 0.00 0.00 0.00 1.85
1318 10376 8.159447 AGAGTTAAATAAAACCGTTAACCCTCT 58.841 33.333 0.00 0.00 38.10 3.69
1319 10377 9.435688 GAGTTAAATAAAACCGTTAACCCTCTA 57.564 33.333 0.00 0.00 38.10 2.43
1328 10386 6.416631 ACCGTTAACCCTCTATATTTCCTC 57.583 41.667 0.00 0.00 0.00 3.71
1351 10409 4.394078 CGTGCTTCGGGTCGTCGA 62.394 66.667 0.00 0.00 37.38 4.20
1380 10445 2.286365 TGTGGTTCTTCATGGGGTTC 57.714 50.000 0.00 0.00 0.00 3.62
1382 10447 0.037590 TGGTTCTTCATGGGGTTCGG 59.962 55.000 0.00 0.00 0.00 4.30
1384 10449 1.064685 GGTTCTTCATGGGGTTCGGAT 60.065 52.381 0.00 0.00 0.00 4.18
1388 10474 2.124736 CATGGGGTTCGGATGCGT 60.125 61.111 6.49 0.00 0.00 5.24
1394 10480 1.520787 GGTTCGGATGCGTAGGTGG 60.521 63.158 6.49 0.00 0.00 4.61
1401 10487 0.535102 GATGCGTAGGTGGGGATTGG 60.535 60.000 0.00 0.00 0.00 3.16
1404 10490 2.192175 GTAGGTGGGGATTGGGCG 59.808 66.667 0.00 0.00 0.00 6.13
1420 10506 2.157701 GCGCTGAAGTCTCTGCTCG 61.158 63.158 0.00 0.00 42.66 5.03
1437 10523 3.244422 TGCTCGTTGACCTGGTTAATTCT 60.244 43.478 7.35 0.00 0.00 2.40
1449 10535 3.516300 TGGTTAATTCTGTTAGGCTCCGA 59.484 43.478 0.00 0.00 0.00 4.55
1465 10551 0.958091 CCGATTTGGGTGCAACAAGA 59.042 50.000 3.06 0.00 39.98 3.02
1471 10557 1.152546 GGGTGCAACAAGAGGGGTT 60.153 57.895 3.06 0.00 39.98 4.11
1480 10566 1.421646 ACAAGAGGGGTTCAGGTTCAG 59.578 52.381 0.00 0.00 0.00 3.02
1518 10604 0.645868 GCGAATTGCGAGTAGTGTCC 59.354 55.000 0.00 0.00 44.57 4.02
1519 10605 1.990799 CGAATTGCGAGTAGTGTCCA 58.009 50.000 0.00 0.00 44.57 4.02
1520 10606 2.540515 CGAATTGCGAGTAGTGTCCAT 58.459 47.619 0.00 0.00 44.57 3.41
1521 10607 2.535984 CGAATTGCGAGTAGTGTCCATC 59.464 50.000 0.00 0.00 44.57 3.51
1522 10608 3.735208 CGAATTGCGAGTAGTGTCCATCT 60.735 47.826 0.00 0.00 44.57 2.90
1523 10609 4.497507 CGAATTGCGAGTAGTGTCCATCTA 60.498 45.833 0.00 0.00 44.57 1.98
1524 10610 5.339008 AATTGCGAGTAGTGTCCATCTAA 57.661 39.130 0.00 0.00 0.00 2.10
1538 10624 5.128919 GTCCATCTAAGGTGCATTTGATCT 58.871 41.667 0.00 0.00 0.00 2.75
1540 10626 6.767902 GTCCATCTAAGGTGCATTTGATCTTA 59.232 38.462 0.00 0.00 0.00 2.10
1541 10627 6.994496 TCCATCTAAGGTGCATTTGATCTTAG 59.006 38.462 0.00 0.00 38.61 2.18
1542 10628 6.769822 CCATCTAAGGTGCATTTGATCTTAGT 59.230 38.462 0.00 0.00 38.48 2.24
1549 10635 8.814038 AGGTGCATTTGATCTTAGTTTAGATT 57.186 30.769 0.00 0.00 35.06 2.40
1550 10636 8.680903 AGGTGCATTTGATCTTAGTTTAGATTG 58.319 33.333 0.00 0.00 35.06 2.67
1572 10658 5.637127 TGGGTCATATAGGACGATGAGTTA 58.363 41.667 11.14 0.00 38.70 2.24
1578 10664 7.965655 GTCATATAGGACGATGAGTTAGATGTG 59.034 40.741 1.16 0.00 32.81 3.21
1583 10669 3.722147 ACGATGAGTTAGATGTGATGGC 58.278 45.455 0.00 0.00 0.00 4.40
1588 10674 3.129871 GAGTTAGATGTGATGGCTGCTC 58.870 50.000 0.00 0.00 0.00 4.26
1597 10683 2.877168 GTGATGGCTGCTCTATTGAAGG 59.123 50.000 0.00 0.00 0.00 3.46
1604 10690 2.941720 CTGCTCTATTGAAGGCAGGTTC 59.058 50.000 9.54 0.00 41.80 3.62
1613 10699 2.978824 GGCAGGTTCTGGCGTCTA 59.021 61.111 5.75 0.00 46.35 2.59
1614 10700 1.522569 GGCAGGTTCTGGCGTCTAT 59.477 57.895 5.75 0.00 46.35 1.98
1615 10701 0.750850 GGCAGGTTCTGGCGTCTATA 59.249 55.000 5.75 0.00 46.35 1.31
1616 10702 1.344763 GGCAGGTTCTGGCGTCTATAT 59.655 52.381 5.75 0.00 46.35 0.86
1617 10703 2.408050 GCAGGTTCTGGCGTCTATATG 58.592 52.381 0.00 0.00 31.21 1.78
1618 10704 2.035961 GCAGGTTCTGGCGTCTATATGA 59.964 50.000 0.00 0.00 31.21 2.15
1619 10705 3.492656 GCAGGTTCTGGCGTCTATATGAA 60.493 47.826 0.00 0.00 31.21 2.57
1620 10706 4.800914 GCAGGTTCTGGCGTCTATATGAAT 60.801 45.833 0.00 0.00 31.21 2.57
1621 10707 5.566826 GCAGGTTCTGGCGTCTATATGAATA 60.567 44.000 0.00 0.00 31.21 1.75
1622 10708 6.634805 CAGGTTCTGGCGTCTATATGAATAT 58.365 40.000 0.00 0.00 0.00 1.28
1623 10709 7.630728 GCAGGTTCTGGCGTCTATATGAATATA 60.631 40.741 0.00 0.00 31.21 0.86
1624 10710 8.417106 CAGGTTCTGGCGTCTATATGAATATAT 58.583 37.037 0.00 0.00 34.04 0.86
1642 12400 8.492782 TGAATATATTGTGGGGAAATGCATTTT 58.507 29.630 24.81 9.69 0.00 1.82
1646 12404 2.302445 TGTGGGGAAATGCATTTTCTGG 59.698 45.455 25.97 0.00 42.83 3.86
1654 12412 5.334337 GGAAATGCATTTTCTGGCTTCAAAC 60.334 40.000 24.81 7.93 42.83 2.93
1656 12414 4.134379 TGCATTTTCTGGCTTCAAACAA 57.866 36.364 0.00 0.00 0.00 2.83
1663 12421 2.430332 TCTGGCTTCAAACAAACCCTTG 59.570 45.455 0.00 0.00 38.61 3.61
1664 12422 1.484240 TGGCTTCAAACAAACCCTTGG 59.516 47.619 0.00 0.00 36.82 3.61
1668 12426 3.737972 GCTTCAAACAAACCCTTGGAGTG 60.738 47.826 0.00 0.00 36.82 3.51
1689 12447 5.185828 AGTGGCATCTTTTGGATACCTTTTC 59.814 40.000 0.00 0.00 38.41 2.29
1690 12448 4.466015 TGGCATCTTTTGGATACCTTTTCC 59.534 41.667 0.00 0.00 38.41 3.13
1691 12449 4.141937 GGCATCTTTTGGATACCTTTTCCC 60.142 45.833 0.00 0.00 35.48 3.97
1713 12471 3.420893 CTCTCCAACAAGCACCCAAATA 58.579 45.455 0.00 0.00 0.00 1.40
1721 12479 3.640967 ACAAGCACCCAAATATGTGTTGT 59.359 39.130 0.00 0.00 34.72 3.32
1727 12485 5.048364 GCACCCAAATATGTGTTGTTCTGTA 60.048 40.000 0.00 0.00 34.94 2.74
1743 12501 7.859325 TGTTCTGTATTATAAGAAGTTGCCC 57.141 36.000 0.00 0.00 33.21 5.36
1745 12503 6.474140 TCTGTATTATAAGAAGTTGCCCGA 57.526 37.500 0.00 0.00 0.00 5.14
1751 12509 0.240945 AAGAAGTTGCCCGAATTGCG 59.759 50.000 0.00 0.00 40.47 4.85
1755 12513 1.445926 GTTGCCCGAATTGCGCAAT 60.446 52.632 29.36 29.36 43.78 3.56
1760 12518 1.535462 GCCCGAATTGCGCAATAGTAT 59.465 47.619 34.05 19.86 39.11 2.12
1795 12553 9.676195 CAAACTCAAACAAAAAGAAAACCAAAT 57.324 25.926 0.00 0.00 0.00 2.32
1799 12557 9.986833 CTCAAACAAAAAGAAAACCAAATTAGG 57.013 29.630 0.00 0.00 0.00 2.69
1808 12566 5.946377 AGAAAACCAAATTAGGCTACCAGAG 59.054 40.000 0.00 0.00 0.00 3.35
1823 12581 4.058721 ACCAGAGGAAACATGCAAAAAC 57.941 40.909 0.00 0.00 0.00 2.43
1824 12582 3.450457 ACCAGAGGAAACATGCAAAAACA 59.550 39.130 0.00 0.00 0.00 2.83
1833 12591 6.260714 GGAAACATGCAAAAACAGAGGAAAAT 59.739 34.615 0.00 0.00 0.00 1.82
1847 12605 3.012518 AGGAAAATGCAGATCAACCGAG 58.987 45.455 0.00 0.00 0.00 4.63
1977 12769 3.484806 ACCGTTGGGCTGTGGTGA 61.485 61.111 0.00 0.00 36.48 4.02
1984 12776 2.606587 GGGCTGTGGTGAGATGGGT 61.607 63.158 0.00 0.00 0.00 4.51
1985 12777 1.271840 GGGCTGTGGTGAGATGGGTA 61.272 60.000 0.00 0.00 0.00 3.69
1986 12778 0.179000 GGCTGTGGTGAGATGGGTAG 59.821 60.000 0.00 0.00 0.00 3.18
1987 12779 0.462759 GCTGTGGTGAGATGGGTAGC 60.463 60.000 0.00 0.00 0.00 3.58
1989 12781 1.144057 GTGGTGAGATGGGTAGCCG 59.856 63.158 6.45 0.00 0.00 5.52
1992 12784 1.760875 GTGAGATGGGTAGCCGGGA 60.761 63.158 2.18 0.00 0.00 5.14
1993 12785 1.457643 TGAGATGGGTAGCCGGGAG 60.458 63.158 2.18 0.00 0.00 4.30
1994 12786 1.152525 GAGATGGGTAGCCGGGAGA 60.153 63.158 2.18 0.00 0.00 3.71
1998 12790 1.975680 GATGGGTAGCCGGGAGATTAA 59.024 52.381 2.18 0.00 0.00 1.40
1999 12791 1.420430 TGGGTAGCCGGGAGATTAAG 58.580 55.000 2.18 0.00 0.00 1.85
2001 12793 2.091166 TGGGTAGCCGGGAGATTAAGTA 60.091 50.000 2.18 0.00 0.00 2.24
2002 12794 2.298446 GGGTAGCCGGGAGATTAAGTAC 59.702 54.545 2.18 0.00 0.00 2.73
2003 12795 2.030451 GGTAGCCGGGAGATTAAGTACG 60.030 54.545 2.18 0.00 0.00 3.67
2004 12796 1.038280 AGCCGGGAGATTAAGTACGG 58.962 55.000 2.18 0.00 43.81 4.02
2005 12797 0.749049 GCCGGGAGATTAAGTACGGT 59.251 55.000 2.18 0.00 42.98 4.83
2007 12799 2.030451 GCCGGGAGATTAAGTACGGTAG 60.030 54.545 2.18 0.00 42.98 3.18
2008 12800 2.555757 CCGGGAGATTAAGTACGGTAGG 59.444 54.545 0.00 0.00 36.78 3.18
2009 12801 3.480470 CGGGAGATTAAGTACGGTAGGA 58.520 50.000 0.00 0.00 0.00 2.94
2011 12803 3.255395 GGGAGATTAAGTACGGTAGGAGC 59.745 52.174 0.00 0.00 0.00 4.70
2013 12805 2.292845 AGATTAAGTACGGTAGGAGCGC 59.707 50.000 0.00 0.00 43.79 5.92
2014 12806 1.462616 TTAAGTACGGTAGGAGCGCA 58.537 50.000 11.47 0.00 43.79 6.09
2016 12808 0.964358 AAGTACGGTAGGAGCGCACT 60.964 55.000 11.47 10.35 46.25 4.40
2017 12809 1.226603 GTACGGTAGGAGCGCACTG 60.227 63.158 11.47 6.52 43.79 3.66
2019 12811 0.392863 TACGGTAGGAGCGCACTGTA 60.393 55.000 11.47 11.77 43.79 2.74
2020 12812 1.246056 ACGGTAGGAGCGCACTGTAA 61.246 55.000 11.47 0.00 43.79 2.41
2021 12813 0.525668 CGGTAGGAGCGCACTGTAAG 60.526 60.000 11.47 0.00 33.38 2.34
2022 12814 0.806492 GGTAGGAGCGCACTGTAAGC 60.806 60.000 11.47 0.00 37.60 3.09
2457 13249 1.279846 TCCCCTGAAATCCACGTAACC 59.720 52.381 0.00 0.00 0.00 2.85
2585 13377 8.993121 CATTTATATGGATCCAGTCTGTTGTAC 58.007 37.037 21.33 0.00 0.00 2.90
2650 13442 5.957798 TCCCTTGTTCTACAATGTACTACG 58.042 41.667 0.00 0.00 37.48 3.51
2662 13459 2.443416 TGTACTACGCATGTCCTGTCT 58.557 47.619 0.00 0.00 0.00 3.41
2669 13466 1.069703 CGCATGTCCTGTCTGTTTGTG 60.070 52.381 0.00 0.00 0.00 3.33
2723 13520 9.507280 CCATTCTTAATCATGTTACATGTGTTC 57.493 33.333 22.58 0.00 0.00 3.18
2928 13725 0.661187 GGTGAAGTGCGTGCAATGTG 60.661 55.000 0.00 0.00 0.00 3.21
2996 13793 4.260784 GGTGATTATGGCAACGAGAATGTC 60.261 45.833 0.00 0.00 42.51 3.06
3160 13957 7.335422 CACTTAGCTATTCTGAAATCCTTGTGT 59.665 37.037 0.00 0.00 0.00 3.72
3161 13958 7.335422 ACTTAGCTATTCTGAAATCCTTGTGTG 59.665 37.037 0.00 0.00 0.00 3.82
3170 13967 3.947910 AATCCTTGTGTGCTTGATTGG 57.052 42.857 0.00 0.00 0.00 3.16
3207 14004 1.301716 GTGTCCGGCTTCAGCTTGA 60.302 57.895 0.00 0.00 41.70 3.02
3220 14017 4.908601 TCAGCTTGAAAGGTAAGATCCA 57.091 40.909 0.00 0.00 34.49 3.41
3265 14062 3.888930 TGTGGAGATTTTGTTGGAGGAAC 59.111 43.478 0.00 0.00 34.84 3.62
3268 14065 4.145052 GGAGATTTTGTTGGAGGAACTGT 58.855 43.478 0.00 0.00 41.55 3.55
3279 14076 8.106247 TGTTGGAGGAACTGTCAATTAATTAC 57.894 34.615 0.00 1.33 41.55 1.89
3372 14169 5.242795 ACTGCTAGGACATTTTGTTAGGT 57.757 39.130 0.00 0.00 0.00 3.08
3453 14250 5.009710 AGTGACTGAATCGAGTAAACTGTGA 59.990 40.000 0.00 0.00 0.00 3.58
3468 14265 1.207089 CTGTGATTAGGGACCGCTGAA 59.793 52.381 0.00 0.00 0.00 3.02
3516 14313 6.374333 CAGGCTAATTTGGCTTTAGTAGTTCA 59.626 38.462 13.09 0.00 41.04 3.18
3556 14353 5.843421 AGGATGAGTCTGGATTATTAGCAGT 59.157 40.000 0.00 0.00 0.00 4.40
3594 14391 1.243342 CCCTTTGTGCAGGAATGCGA 61.243 55.000 0.00 0.00 35.71 5.10
3766 14563 3.432252 GTCACAACGGTTGGTAAGAGATG 59.568 47.826 23.51 10.86 34.12 2.90
3775 14572 5.346522 GGTTGGTAAGAGATGTACTAACCG 58.653 45.833 12.27 0.00 46.51 4.44
3898 14696 8.603181 GTTTTTAAAGCTGTCATGTGAATTTGT 58.397 29.630 0.00 0.00 0.00 2.83
4009 14808 7.003482 TCCATAAGATATTGCTGTATTGCCAA 58.997 34.615 0.00 0.00 0.00 4.52
4023 14822 7.433708 TGTATTGCCAATAGATAAACATCCG 57.566 36.000 0.00 0.00 0.00 4.18
4025 14824 3.146066 TGCCAATAGATAAACATCCGGC 58.854 45.455 0.00 0.00 37.52 6.13
4046 14845 0.678048 GTCACCCTCCTGCATGGTTC 60.678 60.000 0.00 0.00 37.07 3.62
4049 14848 2.124570 CCTCCTGCATGGTTCGGG 60.125 66.667 0.00 0.00 37.07 5.14
4057 14856 3.194542 CCTGCATGGTTCGGGAAAATAAA 59.805 43.478 0.00 0.00 31.56 1.40
4089 14888 6.430000 TGTCCAAGCTTAAAGGTTTCATAGTC 59.570 38.462 0.00 0.00 32.99 2.59
4096 14895 7.939588 AGCTTAAAGGTTTCATAGTCTGTTCTT 59.060 33.333 0.00 0.00 0.00 2.52
4105 14904 6.485830 TCATAGTCTGTTCTTGATTAGGGG 57.514 41.667 0.00 0.00 0.00 4.79
4186 14985 4.342772 GCAGTAAAAATATCAGTGCGTGG 58.657 43.478 0.00 0.00 0.00 4.94
4187 14986 4.342772 CAGTAAAAATATCAGTGCGTGGC 58.657 43.478 0.00 0.00 0.00 5.01
4188 14987 4.006989 AGTAAAAATATCAGTGCGTGGCA 58.993 39.130 0.00 0.00 35.60 4.92
4189 14988 4.640201 AGTAAAAATATCAGTGCGTGGCAT 59.360 37.500 0.00 0.00 41.91 4.40
4190 14989 3.425577 AAAATATCAGTGCGTGGCATG 57.574 42.857 1.31 1.31 41.91 4.06
4191 14990 2.042686 AATATCAGTGCGTGGCATGT 57.957 45.000 8.75 0.00 41.91 3.21
4192 14991 2.042686 ATATCAGTGCGTGGCATGTT 57.957 45.000 8.75 0.00 41.91 2.71
4221 15020 6.503944 CCTATAAGGATCTAAGGCCTAAGGA 58.496 44.000 5.16 5.04 37.67 3.36
4237 15036 6.763610 GGCCTAAGGATAATATGCTGTATGTC 59.236 42.308 0.00 0.00 0.00 3.06
4417 15216 7.060421 TCACTGGAACTATTTTCACCTCTTTT 58.940 34.615 0.00 0.00 0.00 2.27
4431 15230 3.070015 ACCTCTTTTCTGTTTGCCCATTG 59.930 43.478 0.00 0.00 0.00 2.82
4469 15268 3.192844 ACACCTACGAGATGTGGTAGTTG 59.807 47.826 10.48 9.12 34.71 3.16
4500 15302 4.650972 TGGCCATTCCTACAACTTAGTT 57.349 40.909 0.00 0.00 35.26 2.24
4573 15375 4.260948 CCTTCTGTGAAGAACTTCTGTTGC 60.261 45.833 14.31 2.87 40.14 4.17
4613 15415 7.624706 ACTGTAACTTATAATTCATCGCTCG 57.375 36.000 0.00 0.00 0.00 5.03
4634 15436 1.971167 GGTTGGCTGCGACCATTCA 60.971 57.895 16.09 0.00 40.13 2.57
4659 15461 5.773176 TGTAGGTATGGTGTCGATGATATGT 59.227 40.000 0.00 0.00 0.00 2.29
4669 15471 4.402474 TGTCGATGATATGTCAGGAAGTGT 59.598 41.667 0.00 0.00 37.87 3.55
4694 15496 4.099120 GGAAGATATACGATGCTGCTACG 58.901 47.826 14.70 14.70 0.00 3.51
4760 15562 4.137543 GACCAACAGGTCTCTGAACATTT 58.862 43.478 7.39 0.00 46.73 2.32
4809 15611 3.939066 TGTCCTAGCAAGCTTACCTTTC 58.061 45.455 0.00 0.00 0.00 2.62
4842 15644 3.190874 CGCAGGTCTAGGTTCAAGAATC 58.809 50.000 0.00 0.00 0.00 2.52
4932 15735 7.178573 TCATGATGATACTCCCCTCTAGTTAG 58.821 42.308 0.00 0.00 0.00 2.34
4960 15763 4.156556 TCTGAAACAGTTGCTTCATATGGC 59.843 41.667 2.13 0.00 30.79 4.40
5003 15806 1.502231 CGATATCCGACCTGCAAAGG 58.498 55.000 0.00 0.00 41.76 3.11
5036 15839 1.375523 GATCCCGCTGGTCGTGTTT 60.376 57.895 0.00 0.00 36.19 2.83
5195 15998 0.603569 TCTCCACCAGCGAAAGAGAC 59.396 55.000 0.00 0.00 0.00 3.36
5216 16019 0.835941 AGCTCCAAGAATCGGCATCT 59.164 50.000 0.00 0.00 0.00 2.90
5294 16097 2.938428 AGATCTCTGAGGTCTGGGTT 57.062 50.000 19.29 0.00 0.00 4.11
5297 16100 2.704190 TCTCTGAGGTCTGGGTTCTT 57.296 50.000 4.59 0.00 0.00 2.52
5348 16151 1.269998 GAGACTGTCCTGTACAAGCGT 59.730 52.381 3.76 0.00 37.74 5.07
5352 16155 0.601558 TGTCCTGTACAAGCGTCCTC 59.398 55.000 0.00 0.00 34.29 3.71
5394 16197 4.139786 AGGCTGGTATGAATAATGCTGTG 58.860 43.478 0.00 0.00 0.00 3.66
5395 16198 3.254166 GGCTGGTATGAATAATGCTGTGG 59.746 47.826 0.00 0.00 0.00 4.17
5396 16199 3.304928 GCTGGTATGAATAATGCTGTGGC 60.305 47.826 0.00 0.00 39.26 5.01
5397 16200 2.877786 TGGTATGAATAATGCTGTGGCG 59.122 45.455 0.00 0.00 42.25 5.69
5399 16202 3.753272 GGTATGAATAATGCTGTGGCGAT 59.247 43.478 0.00 0.00 42.25 4.58
5400 16203 3.909776 ATGAATAATGCTGTGGCGATG 57.090 42.857 0.00 0.00 42.25 3.84
5401 16204 1.334556 TGAATAATGCTGTGGCGATGC 59.665 47.619 0.00 0.00 42.25 3.91
5419 16234 2.626088 GCTGCTGGAGCTGTTAAAAG 57.374 50.000 14.33 0.00 45.21 2.27
5420 16235 2.154462 GCTGCTGGAGCTGTTAAAAGA 58.846 47.619 14.33 0.00 45.21 2.52
5424 16239 3.142174 GCTGGAGCTGTTAAAAGAGTGT 58.858 45.455 0.00 0.00 38.21 3.55
5440 16255 3.321968 AGAGTGTGAGTTGCTGTGTATGA 59.678 43.478 0.00 0.00 0.00 2.15
5444 16259 2.157668 GTGAGTTGCTGTGTATGAACGG 59.842 50.000 0.00 0.00 0.00 4.44
5476 16291 0.394899 CTGGGATTGGGGAAGTCAGC 60.395 60.000 0.00 0.00 0.00 4.26
5482 16297 1.075601 TTGGGGAAGTCAGCATTCCT 58.924 50.000 4.83 0.00 44.75 3.36
5484 16299 0.394899 GGGGAAGTCAGCATTCCTGG 60.395 60.000 4.83 0.00 44.75 4.45
5485 16300 0.329596 GGGAAGTCAGCATTCCTGGT 59.670 55.000 4.83 0.00 44.75 4.00
5486 16301 1.272147 GGGAAGTCAGCATTCCTGGTT 60.272 52.381 4.83 0.00 44.75 3.67
5487 16302 1.815003 GGAAGTCAGCATTCCTGGTTG 59.185 52.381 0.00 0.00 42.52 3.77
5488 16303 2.553028 GGAAGTCAGCATTCCTGGTTGA 60.553 50.000 0.00 0.00 42.52 3.18
5489 16304 2.957402 AGTCAGCATTCCTGGTTGAA 57.043 45.000 0.00 0.00 42.05 2.69
5514 16329 3.190874 GCCTTCAACGAGAGATACTTGG 58.809 50.000 0.00 0.00 34.46 3.61
5517 16332 2.176045 TCAACGAGAGATACTTGGGCA 58.824 47.619 0.00 0.00 34.46 5.36
5526 16342 2.368875 AGATACTTGGGCATTCCTACCG 59.631 50.000 0.00 0.00 36.20 4.02
5537 16353 3.379445 CCTACCGCAGTGGGTCGT 61.379 66.667 4.64 0.58 44.64 4.34
5538 16354 2.048023 CCTACCGCAGTGGGTCGTA 61.048 63.158 4.64 1.75 44.64 3.43
5546 16362 2.287427 CGCAGTGGGTCGTATTACTAGG 60.287 54.545 0.00 0.00 0.00 3.02
5563 16379 2.358247 GGGCACGTTCGACCACAT 60.358 61.111 0.00 0.00 0.00 3.21
5570 16386 1.071019 CGTTCGACCACATCCGTGAG 61.071 60.000 0.00 0.00 46.80 3.51
5571 16387 0.242825 GTTCGACCACATCCGTGAGA 59.757 55.000 0.00 0.00 46.80 3.27
5572 16388 0.526211 TTCGACCACATCCGTGAGAG 59.474 55.000 0.00 0.00 46.80 3.20
5573 16389 0.322187 TCGACCACATCCGTGAGAGA 60.322 55.000 0.00 0.00 46.80 3.10
5574 16390 0.099613 CGACCACATCCGTGAGAGAG 59.900 60.000 0.00 0.00 46.80 3.20
5575 16391 0.179124 GACCACATCCGTGAGAGAGC 60.179 60.000 0.00 0.00 46.80 4.09
5576 16392 0.613292 ACCACATCCGTGAGAGAGCT 60.613 55.000 0.00 0.00 46.80 4.09
5577 16393 1.341089 ACCACATCCGTGAGAGAGCTA 60.341 52.381 0.00 0.00 46.80 3.32
5578 16394 1.336440 CCACATCCGTGAGAGAGCTAG 59.664 57.143 0.00 0.00 46.80 3.42
5579 16395 2.293170 CACATCCGTGAGAGAGCTAGA 58.707 52.381 0.00 0.00 46.80 2.43
5580 16396 2.290367 CACATCCGTGAGAGAGCTAGAG 59.710 54.545 0.00 0.00 46.80 2.43
5581 16397 1.879380 CATCCGTGAGAGAGCTAGAGG 59.121 57.143 0.00 0.00 0.00 3.69
5582 16398 1.205055 TCCGTGAGAGAGCTAGAGGA 58.795 55.000 0.00 0.00 0.00 3.71
5583 16399 1.560146 TCCGTGAGAGAGCTAGAGGAA 59.440 52.381 0.00 0.00 0.00 3.36
5584 16400 2.173782 TCCGTGAGAGAGCTAGAGGAAT 59.826 50.000 0.00 0.00 0.00 3.01
5585 16401 2.293122 CCGTGAGAGAGCTAGAGGAATG 59.707 54.545 0.00 0.00 0.00 2.67
5586 16402 3.210227 CGTGAGAGAGCTAGAGGAATGA 58.790 50.000 0.00 0.00 0.00 2.57
5587 16403 3.820467 CGTGAGAGAGCTAGAGGAATGAT 59.180 47.826 0.00 0.00 0.00 2.45
5588 16404 4.083324 CGTGAGAGAGCTAGAGGAATGATC 60.083 50.000 0.00 0.00 0.00 2.92
5589 16405 4.218417 GTGAGAGAGCTAGAGGAATGATCC 59.782 50.000 0.00 0.00 46.98 3.36
5600 16416 3.872459 GGAATGATCCAGGGATGTTCT 57.128 47.619 5.35 0.00 45.79 3.01
5601 16417 3.484407 GGAATGATCCAGGGATGTTCTG 58.516 50.000 5.35 0.00 45.79 3.02
5602 16418 3.137176 GGAATGATCCAGGGATGTTCTGA 59.863 47.826 5.35 0.00 45.79 3.27
5603 16419 4.385643 GGAATGATCCAGGGATGTTCTGAA 60.386 45.833 5.35 0.00 45.79 3.02
5604 16420 4.868172 ATGATCCAGGGATGTTCTGAAA 57.132 40.909 5.35 0.00 34.60 2.69
5605 16421 4.656100 TGATCCAGGGATGTTCTGAAAA 57.344 40.909 5.35 0.00 34.60 2.29
5613 16429 5.006386 AGGGATGTTCTGAAAAACTGCTAG 58.994 41.667 0.00 0.00 0.00 3.42
5667 16497 4.130118 GGTCATTCAGGCAATTCGAGTAT 58.870 43.478 0.00 0.00 0.00 2.12
5716 16546 8.387813 TGTAAGAGTTTTAACTTATCCCATGGT 58.612 33.333 11.73 0.00 39.88 3.55
5731 16561 7.695074 ATCCCATGGTGAAATATTTTTGGAT 57.305 32.000 11.73 0.04 0.00 3.41
5732 16562 7.507797 TCCCATGGTGAAATATTTTTGGATT 57.492 32.000 11.73 0.00 0.00 3.01
5763 16593 2.227388 GACAAGAAATCAGTGCACTGGG 59.773 50.000 39.04 20.83 43.91 4.45
5779 16609 2.529744 GGGTGTCCTGGAGCAACCT 61.530 63.158 19.75 0.00 39.29 3.50
5781 16611 0.250513 GGTGTCCTGGAGCAACCTAG 59.749 60.000 13.40 0.00 39.86 3.02
5782 16612 0.391793 GTGTCCTGGAGCAACCTAGC 60.392 60.000 0.00 0.00 39.86 3.42
5783 16613 0.835971 TGTCCTGGAGCAACCTAGCA 60.836 55.000 0.00 0.00 39.86 3.49
5784 16614 0.324943 GTCCTGGAGCAACCTAGCAA 59.675 55.000 0.00 0.00 39.86 3.91
5785 16615 0.324943 TCCTGGAGCAACCTAGCAAC 59.675 55.000 0.00 0.00 39.86 4.17
5786 16616 0.326264 CCTGGAGCAACCTAGCAACT 59.674 55.000 0.00 0.00 39.86 3.16
5787 16617 1.555075 CCTGGAGCAACCTAGCAACTA 59.445 52.381 0.00 0.00 39.86 2.24
5788 16618 2.622436 CTGGAGCAACCTAGCAACTAC 58.378 52.381 1.91 0.00 39.86 2.73
5789 16619 1.278127 TGGAGCAACCTAGCAACTACC 59.722 52.381 1.91 0.00 39.86 3.18
5790 16620 1.555533 GGAGCAACCTAGCAACTACCT 59.444 52.381 0.00 0.00 36.85 3.08
5791 16621 2.622436 GAGCAACCTAGCAACTACCTG 58.378 52.381 0.00 0.00 36.85 4.00
5810 16640 1.000385 TGGCAACTCCGAAATGCAAAG 60.000 47.619 0.00 0.00 41.80 2.77
5829 16659 1.614711 GTGGCATGGGATTGGGAGA 59.385 57.895 0.00 0.00 0.00 3.71
5840 16670 2.092753 GGATTGGGAGACTTGCATCTGA 60.093 50.000 0.00 0.00 0.00 3.27
5854 16684 5.063180 TGCATCTGATTAACCTTGCTTTG 57.937 39.130 0.00 0.00 0.00 2.77
5868 16698 2.836262 TGCTTTGCTTGGAAAACATGG 58.164 42.857 0.00 0.00 0.00 3.66
5874 16704 1.782044 CTTGGAAAACATGGTTGGCG 58.218 50.000 0.00 0.00 0.00 5.69
5887 16717 2.190161 GGTTGGCGTTTCTTGACAAAC 58.810 47.619 0.00 0.00 35.79 2.93
5923 16753 1.740025 GCAAGAGTACTGAATGGGTGC 59.260 52.381 0.00 0.00 0.00 5.01
5954 16784 4.427312 CAGAGGTTGATTTTATGCAAGCC 58.573 43.478 0.00 0.00 41.90 4.35
5956 16786 4.159135 AGAGGTTGATTTTATGCAAGCCAG 59.841 41.667 0.00 0.00 41.90 4.85
5957 16787 4.088634 AGGTTGATTTTATGCAAGCCAGA 58.911 39.130 0.00 0.00 41.90 3.86
5996 16826 1.610886 GCTACTTGCCGGGGGATTATC 60.611 57.143 2.18 0.00 35.15 1.75
6022 16852 1.221840 GGGAAGCTCTCAATGCCGA 59.778 57.895 0.00 0.00 0.00 5.54
6023 16853 0.179034 GGGAAGCTCTCAATGCCGAT 60.179 55.000 0.00 0.00 0.00 4.18
6026 16856 1.865970 GAAGCTCTCAATGCCGATCTG 59.134 52.381 0.00 0.00 0.00 2.90
6028 16858 1.202510 AGCTCTCAATGCCGATCTGAC 60.203 52.381 0.00 0.00 0.00 3.51
6029 16859 1.472201 GCTCTCAATGCCGATCTGACA 60.472 52.381 0.00 0.00 0.00 3.58
6030 16860 2.471818 CTCTCAATGCCGATCTGACAG 58.528 52.381 0.00 0.00 0.00 3.51
6031 16861 2.100418 CTCTCAATGCCGATCTGACAGA 59.900 50.000 7.80 7.80 0.00 3.41
6032 16862 2.497273 TCTCAATGCCGATCTGACAGAA 59.503 45.455 9.70 0.00 0.00 3.02
6033 16863 3.055891 TCTCAATGCCGATCTGACAGAAA 60.056 43.478 9.70 0.00 0.00 2.52
6050 16880 3.187637 CAGAAACAGCAATGCCAAATTGG 59.812 43.478 7.84 7.84 41.55 3.16
6091 16936 2.222729 GCGTGCGTGGAGTAGTAAATTG 60.223 50.000 0.00 0.00 0.00 2.32
6115 16960 7.808672 TGCAAAAATGAATGATCACAAATTCC 58.191 30.769 0.00 0.00 38.69 3.01
6117 16962 8.455682 GCAAAAATGAATGATCACAAATTCCAT 58.544 29.630 0.00 0.00 38.69 3.41
6174 17019 2.026449 AGCTTTGCTGATACTGGAAGCT 60.026 45.455 2.82 2.82 37.57 3.74
6188 17033 1.208293 GGAAGCTACCAACCTCCTCAG 59.792 57.143 0.00 0.00 0.00 3.35
6192 17037 1.745141 GCTACCAACCTCCTCAGCATG 60.745 57.143 0.00 0.00 37.54 4.06
6241 17086 4.518970 TGCTTTCGACATTTTTAAGCCTCT 59.481 37.500 11.96 0.00 40.25 3.69
6270 17115 0.971386 CTGCCACCTCTGCCATTTTT 59.029 50.000 0.00 0.00 0.00 1.94
6279 17124 2.809174 GCCATTTTTGGTCGCGCC 60.809 61.111 0.00 6.97 37.90 6.53
6333 17178 6.332976 ACCATCTGGATCCTTTCAAGTATT 57.667 37.500 14.23 0.00 38.94 1.89
6336 17181 8.336235 ACCATCTGGATCCTTTCAAGTATTAAA 58.664 33.333 14.23 0.00 38.94 1.52
6342 17187 8.966868 TGGATCCTTTCAAGTATTAAAATGTCC 58.033 33.333 14.23 0.00 0.00 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.039978 CGTCGTAGCAGGAGCATAGG 60.040 60.000 0.00 0.00 45.49 2.57
1 2 0.039978 CCGTCGTAGCAGGAGCATAG 60.040 60.000 0.00 0.00 45.49 2.23
2 3 1.452953 CCCGTCGTAGCAGGAGCATA 61.453 60.000 0.00 0.00 45.49 3.14
3 4 2.786495 CCCGTCGTAGCAGGAGCAT 61.786 63.158 0.00 0.00 45.49 3.79
5 6 4.874977 GCCCGTCGTAGCAGGAGC 62.875 72.222 0.00 0.00 42.56 4.70
6 7 2.615262 GAAGCCCGTCGTAGCAGGAG 62.615 65.000 7.19 0.00 0.00 3.69
8 9 2.202756 GAAGCCCGTCGTAGCAGG 60.203 66.667 7.19 0.00 0.00 4.85
9 10 2.579787 CGAAGCCCGTCGTAGCAG 60.580 66.667 7.19 0.00 36.26 4.24
11 12 4.867599 CCCGAAGCCCGTCGTAGC 62.868 72.222 3.22 0.00 39.43 3.58
16 17 2.261430 ATTAACCCCCGAAGCCCGTC 62.261 60.000 0.00 0.00 36.31 4.79
17 18 2.303282 ATTAACCCCCGAAGCCCGT 61.303 57.895 0.00 0.00 36.31 5.28
18 19 1.822186 CATTAACCCCCGAAGCCCG 60.822 63.158 0.00 0.00 38.18 6.13
19 20 0.750546 GTCATTAACCCCCGAAGCCC 60.751 60.000 0.00 0.00 0.00 5.19
20 21 1.093496 CGTCATTAACCCCCGAAGCC 61.093 60.000 0.00 0.00 0.00 4.35
21 22 0.108041 TCGTCATTAACCCCCGAAGC 60.108 55.000 0.00 0.00 0.00 3.86
22 23 2.210116 CATCGTCATTAACCCCCGAAG 58.790 52.381 0.00 0.00 0.00 3.79
23 24 1.134340 CCATCGTCATTAACCCCCGAA 60.134 52.381 0.00 0.00 0.00 4.30
24 25 0.466543 CCATCGTCATTAACCCCCGA 59.533 55.000 0.00 0.00 0.00 5.14
26 27 1.210967 TCACCATCGTCATTAACCCCC 59.789 52.381 0.00 0.00 0.00 5.40
27 28 2.702592 TCACCATCGTCATTAACCCC 57.297 50.000 0.00 0.00 0.00 4.95
28 29 3.128068 GGTTTCACCATCGTCATTAACCC 59.872 47.826 0.00 0.00 38.42 4.11
29 30 4.007659 AGGTTTCACCATCGTCATTAACC 58.992 43.478 0.00 0.00 41.95 2.85
30 31 4.671766 GCAGGTTTCACCATCGTCATTAAC 60.672 45.833 0.00 0.00 41.95 2.01
31 32 3.438781 GCAGGTTTCACCATCGTCATTAA 59.561 43.478 0.00 0.00 41.95 1.40
33 34 1.812571 GCAGGTTTCACCATCGTCATT 59.187 47.619 0.00 0.00 41.95 2.57
34 35 1.453155 GCAGGTTTCACCATCGTCAT 58.547 50.000 0.00 0.00 41.95 3.06
35 36 0.948623 CGCAGGTTTCACCATCGTCA 60.949 55.000 0.00 0.00 41.95 4.35
55 56 2.942641 CCAAAGAGGGGACGAAACC 58.057 57.895 0.00 0.00 0.00 3.27
86 87 2.666994 GGAAAAGAACGACGGTCAGATC 59.333 50.000 16.50 9.24 0.00 2.75
87 88 2.299297 AGGAAAAGAACGACGGTCAGAT 59.701 45.455 16.50 0.00 0.00 2.90
88 89 1.684983 AGGAAAAGAACGACGGTCAGA 59.315 47.619 16.50 0.00 0.00 3.27
94 95 0.161024 GCACGAGGAAAAGAACGACG 59.839 55.000 0.00 0.00 0.00 5.12
95 96 0.161024 CGCACGAGGAAAAGAACGAC 59.839 55.000 0.00 0.00 0.00 4.34
102 103 3.137484 CTCCATCGCACGAGGAAAA 57.863 52.632 6.24 0.00 0.00 2.29
110 111 2.325583 TATGGTTTCCTCCATCGCAC 57.674 50.000 1.31 0.00 45.67 5.34
144 145 1.433053 TTTGTGGCACCGTTGTCGAG 61.433 55.000 16.26 0.00 39.71 4.04
146 147 0.030101 AATTTGTGGCACCGTTGTCG 59.970 50.000 16.26 0.00 0.00 4.35
148 149 1.205893 ACAAATTTGTGGCACCGTTGT 59.794 42.857 22.71 15.66 40.49 3.32
151 152 0.387565 GGACAAATTTGTGGCACCGT 59.612 50.000 27.85 0.65 42.43 4.83
187 188 2.549778 GGACTCCATGAGCATCTTAGGC 60.550 54.545 0.00 0.00 34.92 3.93
199 200 1.755959 CTCTCTGGTGAGGACTCCATG 59.244 57.143 0.00 0.00 40.58 3.66
200 201 1.643286 TCTCTCTGGTGAGGACTCCAT 59.357 52.381 0.00 0.00 40.58 3.41
212 213 4.100189 CCAACCCTAACTACATCTCTCTGG 59.900 50.000 0.00 0.00 0.00 3.86
216 217 4.466726 GTGACCAACCCTAACTACATCTCT 59.533 45.833 0.00 0.00 0.00 3.10
217 218 4.466726 AGTGACCAACCCTAACTACATCTC 59.533 45.833 0.00 0.00 0.00 2.75
218 219 4.426704 AGTGACCAACCCTAACTACATCT 58.573 43.478 0.00 0.00 0.00 2.90
219 220 4.820894 AGTGACCAACCCTAACTACATC 57.179 45.455 0.00 0.00 0.00 3.06
221 222 4.228824 AGAAGTGACCAACCCTAACTACA 58.771 43.478 0.00 0.00 0.00 2.74
222 223 4.282703 TGAGAAGTGACCAACCCTAACTAC 59.717 45.833 0.00 0.00 0.00 2.73
223 224 4.485875 TGAGAAGTGACCAACCCTAACTA 58.514 43.478 0.00 0.00 0.00 2.24
238 946 2.883828 CGCCCACACCCTGAGAAGT 61.884 63.158 0.00 0.00 0.00 3.01
277 986 5.192927 AGTTATCAAGGAATCATCGGCAAA 58.807 37.500 0.00 0.00 0.00 3.68
312 1021 0.608640 GATGACAAGGTCTGGTCGGT 59.391 55.000 1.54 0.00 36.83 4.69
324 1033 2.826128 AGAGTTAGCGAGTGGATGACAA 59.174 45.455 0.00 0.00 0.00 3.18
339 1048 3.398318 TCCATGCACCTAGGAGAGTTA 57.602 47.619 17.98 0.00 0.00 2.24
346 1055 0.399454 CCCTCATCCATGCACCTAGG 59.601 60.000 7.41 7.41 0.00 3.02
349 1058 1.620589 ACCCCTCATCCATGCACCT 60.621 57.895 0.00 0.00 0.00 4.00
350 1059 1.454479 CACCCCTCATCCATGCACC 60.454 63.158 0.00 0.00 0.00 5.01
352 1061 1.303948 CACACCCCTCATCCATGCA 59.696 57.895 0.00 0.00 0.00 3.96
353 1062 0.323725 AACACACCCCTCATCCATGC 60.324 55.000 0.00 0.00 0.00 4.06
354 1063 1.466856 CAACACACCCCTCATCCATG 58.533 55.000 0.00 0.00 0.00 3.66
397 1108 2.634815 TCGGAAGACCTCTATAGCGT 57.365 50.000 0.00 0.00 33.31 5.07
411 2633 0.533085 TGCCACAATCGTTGTCGGAA 60.533 50.000 15.91 8.45 43.23 4.30
419 2641 1.163420 TCAAAGCGTGCCACAATCGT 61.163 50.000 0.00 0.00 0.00 3.73
428 2651 2.082366 CACGGCAATCAAAGCGTGC 61.082 57.895 0.00 0.00 37.55 5.34
433 2656 2.653890 CAAGACACACGGCAATCAAAG 58.346 47.619 0.00 0.00 0.00 2.77
434 2657 1.268999 GCAAGACACACGGCAATCAAA 60.269 47.619 0.00 0.00 0.00 2.69
467 2701 0.039074 CTCAACGCCTCGACTTGTCT 60.039 55.000 0.00 0.00 0.00 3.41
526 2760 1.419374 GCATTCTTCGACAGACACGT 58.581 50.000 0.00 0.00 0.00 4.49
533 2767 6.019075 CCAACTTATATTCGCATTCTTCGACA 60.019 38.462 0.00 0.00 35.51 4.35
534 2768 6.200286 TCCAACTTATATTCGCATTCTTCGAC 59.800 38.462 0.00 0.00 35.51 4.20
535 2769 6.200286 GTCCAACTTATATTCGCATTCTTCGA 59.800 38.462 0.00 0.00 0.00 3.71
536 2770 6.019075 TGTCCAACTTATATTCGCATTCTTCG 60.019 38.462 0.00 0.00 0.00 3.79
537 2771 7.246674 TGTCCAACTTATATTCGCATTCTTC 57.753 36.000 0.00 0.00 0.00 2.87
538 2772 7.498900 TCATGTCCAACTTATATTCGCATTCTT 59.501 33.333 0.00 0.00 0.00 2.52
539 2773 6.992123 TCATGTCCAACTTATATTCGCATTCT 59.008 34.615 0.00 0.00 0.00 2.40
540 2774 7.171508 TCTCATGTCCAACTTATATTCGCATTC 59.828 37.037 0.00 0.00 0.00 2.67
541 2775 6.992123 TCTCATGTCCAACTTATATTCGCATT 59.008 34.615 0.00 0.00 0.00 3.56
542 2776 6.524734 TCTCATGTCCAACTTATATTCGCAT 58.475 36.000 0.00 0.00 0.00 4.73
543 2777 5.912892 TCTCATGTCCAACTTATATTCGCA 58.087 37.500 0.00 0.00 0.00 5.10
544 2778 7.426929 AATCTCATGTCCAACTTATATTCGC 57.573 36.000 0.00 0.00 0.00 4.70
556 2826 4.221924 TGACGACCTAAAATCTCATGTCCA 59.778 41.667 0.00 0.00 0.00 4.02
632 2905 6.880484 TCCCTTTAAGCGACAACTAATATGA 58.120 36.000 0.00 0.00 0.00 2.15
649 2922 8.764558 TCAGTGCTAAATACTTACATCCCTTTA 58.235 33.333 0.00 0.00 0.00 1.85
680 2953 5.368230 TCCCTGAAACACATGTATATAGGCA 59.632 40.000 0.00 0.00 0.00 4.75
683 2956 7.987458 AGTTGTCCCTGAAACACATGTATATAG 59.013 37.037 0.00 0.00 0.00 1.31
686 2959 6.121776 AGTTGTCCCTGAAACACATGTATA 57.878 37.500 0.00 0.00 0.00 1.47
689 2962 3.297134 AGTTGTCCCTGAAACACATGT 57.703 42.857 0.00 0.00 0.00 3.21
693 2966 5.944007 ACCATATTAGTTGTCCCTGAAACAC 59.056 40.000 0.00 0.00 0.00 3.32
702 2975 9.788960 GAAATCTCAAAACCATATTAGTTGTCC 57.211 33.333 0.00 0.00 0.00 4.02
800 4523 3.311091 ACGCATACCTTACCCCTATGAA 58.689 45.455 0.00 0.00 0.00 2.57
849 4572 9.552114 AGACACAAGCGTTTATATATATACGTC 57.448 33.333 26.12 20.45 39.05 4.34
850 4573 9.338291 CAGACACAAGCGTTTATATATATACGT 57.662 33.333 26.12 15.81 39.05 3.57
851 4574 9.338291 ACAGACACAAGCGTTTATATATATACG 57.662 33.333 23.37 23.37 39.56 3.06
855 4578 9.673454 CAGTACAGACACAAGCGTTTATATATA 57.327 33.333 0.00 0.00 0.00 0.86
856 4579 8.410912 TCAGTACAGACACAAGCGTTTATATAT 58.589 33.333 0.00 0.00 0.00 0.86
862 6286 3.173668 TCAGTACAGACACAAGCGTTT 57.826 42.857 0.00 0.00 0.00 3.60
863 6287 2.882927 TCAGTACAGACACAAGCGTT 57.117 45.000 0.00 0.00 0.00 4.84
864 6288 2.035961 ACATCAGTACAGACACAAGCGT 59.964 45.455 0.00 0.00 0.00 5.07
892 6316 3.067742 CGTACTCCGATGGGAATGTAAGT 59.932 47.826 0.00 0.00 43.27 2.24
893 6317 3.639538 CGTACTCCGATGGGAATGTAAG 58.360 50.000 0.00 0.00 43.27 2.34
894 6318 2.223876 GCGTACTCCGATGGGAATGTAA 60.224 50.000 0.00 0.00 43.27 2.41
895 6319 1.338973 GCGTACTCCGATGGGAATGTA 59.661 52.381 0.00 0.00 43.27 2.29
897 6321 0.600255 GGCGTACTCCGATGGGAATG 60.600 60.000 0.00 0.00 43.27 2.67
910 6375 4.226761 CACCATGAAAAGAAAAGGCGTAC 58.773 43.478 0.00 0.00 0.00 3.67
914 6379 5.869344 GGAATACACCATGAAAAGAAAAGGC 59.131 40.000 0.00 0.00 0.00 4.35
925 6390 6.303054 TGTTTTTCTCTGGAATACACCATGA 58.697 36.000 0.00 0.00 39.34 3.07
926 6391 6.573664 TGTTTTTCTCTGGAATACACCATG 57.426 37.500 0.00 0.00 39.34 3.66
932 6397 8.968242 GTTGTCAAATGTTTTTCTCTGGAATAC 58.032 33.333 0.00 0.00 0.00 1.89
939 6404 5.422012 ACCTGGTTGTCAAATGTTTTTCTCT 59.578 36.000 0.00 0.00 0.00 3.10
940 6405 5.519927 CACCTGGTTGTCAAATGTTTTTCTC 59.480 40.000 0.00 0.00 0.00 2.87
941 6406 5.186797 TCACCTGGTTGTCAAATGTTTTTCT 59.813 36.000 0.00 0.00 0.00 2.52
942 6407 5.415221 TCACCTGGTTGTCAAATGTTTTTC 58.585 37.500 0.00 0.00 0.00 2.29
943 6408 5.413309 TCACCTGGTTGTCAAATGTTTTT 57.587 34.783 0.00 0.00 0.00 1.94
946 6411 2.362077 GCTCACCTGGTTGTCAAATGTT 59.638 45.455 0.00 0.00 0.00 2.71
948 6413 1.270550 GGCTCACCTGGTTGTCAAATG 59.729 52.381 0.00 0.00 0.00 2.32
949 6414 1.133513 TGGCTCACCTGGTTGTCAAAT 60.134 47.619 0.00 0.00 36.63 2.32
950 6415 0.257328 TGGCTCACCTGGTTGTCAAA 59.743 50.000 0.00 0.00 36.63 2.69
1027 8387 1.738099 GTACGTGCCAGGCTGACAG 60.738 63.158 17.94 7.36 0.00 3.51
1029 8389 2.809601 CGTACGTGCCAGGCTGAC 60.810 66.667 17.94 4.51 0.00 3.51
1030 8390 2.986979 TCGTACGTGCCAGGCTGA 60.987 61.111 17.94 0.00 0.00 4.26
1031 8391 2.809601 GTCGTACGTGCCAGGCTG 60.810 66.667 16.05 7.75 0.00 4.85
1043 8403 0.318120 GTTTCGGGTTGGGAGTCGTA 59.682 55.000 0.00 0.00 0.00 3.43
1046 8406 1.202722 TCTTGTTTCGGGTTGGGAGTC 60.203 52.381 0.00 0.00 0.00 3.36
1047 8407 0.841289 TCTTGTTTCGGGTTGGGAGT 59.159 50.000 0.00 0.00 0.00 3.85
1048 8408 1.812571 CATCTTGTTTCGGGTTGGGAG 59.187 52.381 0.00 0.00 0.00 4.30
1049 8409 1.144093 ACATCTTGTTTCGGGTTGGGA 59.856 47.619 0.00 0.00 0.00 4.37
1050 8410 1.616159 ACATCTTGTTTCGGGTTGGG 58.384 50.000 0.00 0.00 0.00 4.12
1080 8447 2.155279 GACCAAGAAGAAAGGGAGCAC 58.845 52.381 0.00 0.00 0.00 4.40
1137 8504 4.851214 AGAGGAGGAGGGCTCGCC 62.851 72.222 0.00 0.00 0.00 5.54
1187 8554 3.797353 CCATGGACCTGGACCCGG 61.797 72.222 5.56 9.24 38.69 5.73
1293 10351 8.327941 AGAGGGTTAACGGTTTTATTTAACTC 57.672 34.615 0.00 0.00 36.72 3.01
1309 10367 5.130292 CGCGAGGAAATATAGAGGGTTAA 57.870 43.478 0.00 0.00 0.00 2.01
1347 10405 2.022129 CCACAACGCCAGTCTCGAC 61.022 63.158 0.00 0.00 0.00 4.20
1350 10408 0.249911 AGAACCACAACGCCAGTCTC 60.250 55.000 0.00 0.00 0.00 3.36
1351 10409 0.180406 AAGAACCACAACGCCAGTCT 59.820 50.000 0.00 0.00 0.00 3.24
1380 10445 2.040009 AATCCCCACCTACGCATCCG 62.040 60.000 0.00 0.00 41.14 4.18
1382 10447 0.535102 CCAATCCCCACCTACGCATC 60.535 60.000 0.00 0.00 0.00 3.91
1384 10449 2.675242 CCCAATCCCCACCTACGCA 61.675 63.158 0.00 0.00 0.00 5.24
1388 10474 3.804329 GCGCCCAATCCCCACCTA 61.804 66.667 0.00 0.00 0.00 3.08
1394 10480 2.044946 ACTTCAGCGCCCAATCCC 60.045 61.111 2.29 0.00 0.00 3.85
1401 10487 1.809209 GAGCAGAGACTTCAGCGCC 60.809 63.158 2.29 0.00 40.44 6.53
1404 10490 1.066914 CAACGAGCAGAGACTTCAGC 58.933 55.000 0.00 0.00 36.20 4.26
1406 10492 1.000163 GGTCAACGAGCAGAGACTTCA 60.000 52.381 0.00 0.00 0.00 3.02
1420 10506 5.106277 GCCTAACAGAATTAACCAGGTCAAC 60.106 44.000 0.00 0.00 0.00 3.18
1437 10523 0.988832 ACCCAAATCGGAGCCTAACA 59.011 50.000 0.00 0.00 36.56 2.41
1449 10535 1.341080 CCCTCTTGTTGCACCCAAAT 58.659 50.000 0.00 0.00 31.68 2.32
1465 10551 1.201429 ATCGCTGAACCTGAACCCCT 61.201 55.000 0.00 0.00 0.00 4.79
1471 10557 4.471904 AAACAGATATCGCTGAACCTGA 57.528 40.909 0.00 0.00 39.20 3.86
1480 10566 4.155449 TCGCAAACAAAAACAGATATCGC 58.845 39.130 0.00 0.00 0.00 4.58
1512 10598 4.012374 CAAATGCACCTTAGATGGACACT 58.988 43.478 0.00 0.00 0.00 3.55
1513 10599 4.009675 TCAAATGCACCTTAGATGGACAC 58.990 43.478 0.00 0.00 0.00 3.67
1514 10600 4.299586 TCAAATGCACCTTAGATGGACA 57.700 40.909 0.00 0.00 0.00 4.02
1515 10601 5.128919 AGATCAAATGCACCTTAGATGGAC 58.871 41.667 0.00 0.00 0.00 4.02
1516 10602 5.378230 AGATCAAATGCACCTTAGATGGA 57.622 39.130 0.00 0.00 0.00 3.41
1517 10603 6.769822 ACTAAGATCAAATGCACCTTAGATGG 59.230 38.462 17.15 0.00 38.85 3.51
1518 10604 7.798596 ACTAAGATCAAATGCACCTTAGATG 57.201 36.000 17.15 1.01 38.85 2.90
1519 10605 8.814038 AAACTAAGATCAAATGCACCTTAGAT 57.186 30.769 17.15 6.71 38.85 1.98
1520 10606 9.383519 CTAAACTAAGATCAAATGCACCTTAGA 57.616 33.333 17.15 2.97 38.85 2.10
1521 10607 9.383519 TCTAAACTAAGATCAAATGCACCTTAG 57.616 33.333 0.00 0.00 41.02 2.18
1522 10608 9.905713 ATCTAAACTAAGATCAAATGCACCTTA 57.094 29.630 0.00 0.00 30.09 2.69
1523 10609 8.814038 ATCTAAACTAAGATCAAATGCACCTT 57.186 30.769 0.00 0.00 30.09 3.50
1524 10610 8.680903 CAATCTAAACTAAGATCAAATGCACCT 58.319 33.333 0.00 0.00 35.10 4.00
1538 10624 8.582437 CGTCCTATATGACCCAATCTAAACTAA 58.418 37.037 2.95 0.00 31.35 2.24
1540 10626 6.781014 TCGTCCTATATGACCCAATCTAAACT 59.219 38.462 2.95 0.00 31.35 2.66
1541 10627 6.989659 TCGTCCTATATGACCCAATCTAAAC 58.010 40.000 2.95 0.00 31.35 2.01
1542 10628 7.453439 TCATCGTCCTATATGACCCAATCTAAA 59.547 37.037 2.95 0.00 31.35 1.85
1549 10635 4.114015 ACTCATCGTCCTATATGACCCA 57.886 45.455 2.95 0.00 31.35 4.51
1550 10636 5.944599 TCTAACTCATCGTCCTATATGACCC 59.055 44.000 2.95 0.00 31.35 4.46
1572 10658 3.390311 TCAATAGAGCAGCCATCACATCT 59.610 43.478 0.00 0.00 0.00 2.90
1578 10664 1.878734 GCCTTCAATAGAGCAGCCATC 59.121 52.381 0.00 0.00 0.00 3.51
1583 10669 2.706339 ACCTGCCTTCAATAGAGCAG 57.294 50.000 3.90 3.90 42.76 4.24
1588 10674 2.019984 GCCAGAACCTGCCTTCAATAG 58.980 52.381 0.00 0.00 0.00 1.73
1597 10683 2.035961 TCATATAGACGCCAGAACCTGC 59.964 50.000 0.00 0.00 0.00 4.85
1604 10690 7.439356 CCCACAATATATTCATATAGACGCCAG 59.561 40.741 0.00 0.00 0.00 4.85
1608 10694 9.884636 TTTCCCCACAATATATTCATATAGACG 57.115 33.333 0.00 0.00 0.00 4.18
1612 10698 9.987726 TGCATTTCCCCACAATATATTCATATA 57.012 29.630 0.00 0.00 0.00 0.86
1613 10699 8.898303 TGCATTTCCCCACAATATATTCATAT 57.102 30.769 0.00 0.00 0.00 1.78
1614 10700 8.898303 ATGCATTTCCCCACAATATATTCATA 57.102 30.769 0.00 0.00 0.00 2.15
1615 10701 7.801893 ATGCATTTCCCCACAATATATTCAT 57.198 32.000 0.00 0.00 0.00 2.57
1616 10702 7.615039 AATGCATTTCCCCACAATATATTCA 57.385 32.000 5.99 0.00 0.00 2.57
1617 10703 8.907222 AAAATGCATTTCCCCACAATATATTC 57.093 30.769 24.28 0.00 0.00 1.75
1618 10704 8.907222 GAAAATGCATTTCCCCACAATATATT 57.093 30.769 24.28 4.12 41.35 1.28
1642 12400 2.430332 CAAGGGTTTGTTTGAAGCCAGA 59.570 45.455 8.36 0.00 46.93 3.86
1646 12404 2.430694 ACTCCAAGGGTTTGTTTGAAGC 59.569 45.455 0.00 0.00 32.21 3.86
1654 12412 0.890683 GATGCCACTCCAAGGGTTTG 59.109 55.000 0.00 0.00 0.00 2.93
1656 12414 0.779997 AAGATGCCACTCCAAGGGTT 59.220 50.000 0.00 0.00 0.00 4.11
1689 12447 1.303643 GGTGCTTGTTGGAGAGGGG 60.304 63.158 0.00 0.00 0.00 4.79
1690 12448 1.303643 GGGTGCTTGTTGGAGAGGG 60.304 63.158 0.00 0.00 0.00 4.30
1691 12449 0.178992 TTGGGTGCTTGTTGGAGAGG 60.179 55.000 0.00 0.00 0.00 3.69
1721 12479 6.880484 TCGGGCAACTTCTTATAATACAGAA 58.120 36.000 0.00 0.00 0.00 3.02
1727 12485 5.505654 CGCAATTCGGGCAACTTCTTATAAT 60.506 40.000 0.00 0.00 33.78 1.28
1743 12501 6.632171 TGATCTATACTATTGCGCAATTCG 57.368 37.500 37.79 29.11 42.12 3.34
1745 12503 6.710295 TGGTTGATCTATACTATTGCGCAATT 59.290 34.615 37.79 24.45 32.50 2.32
1751 12509 8.662781 TGAGTTTGGTTGATCTATACTATTGC 57.337 34.615 0.00 0.00 0.00 3.56
1760 12518 8.744652 TCTTTTTGTTTGAGTTTGGTTGATCTA 58.255 29.630 0.00 0.00 0.00 1.98
1795 12553 3.370527 GCATGTTTCCTCTGGTAGCCTAA 60.371 47.826 0.00 0.00 0.00 2.69
1799 12557 2.113860 TGCATGTTTCCTCTGGTAGC 57.886 50.000 0.00 0.00 0.00 3.58
1808 12566 4.320608 TCCTCTGTTTTTGCATGTTTCC 57.679 40.909 0.00 0.00 0.00 3.13
1823 12581 3.181503 CGGTTGATCTGCATTTTCCTCTG 60.182 47.826 0.00 0.00 0.00 3.35
1824 12582 3.012518 CGGTTGATCTGCATTTTCCTCT 58.987 45.455 0.00 0.00 0.00 3.69
1833 12591 0.321346 TTGAGCTCGGTTGATCTGCA 59.679 50.000 9.64 0.00 0.00 4.41
1847 12605 2.505557 GCCGCAGCATGTTTGAGC 60.506 61.111 0.00 0.00 39.31 4.26
1977 12769 0.104934 AATCTCCCGGCTACCCATCT 60.105 55.000 0.00 0.00 0.00 2.90
1984 12776 2.233271 CCGTACTTAATCTCCCGGCTA 58.767 52.381 0.00 0.00 0.00 3.93
1985 12777 1.038280 CCGTACTTAATCTCCCGGCT 58.962 55.000 0.00 0.00 0.00 5.52
1986 12778 0.749049 ACCGTACTTAATCTCCCGGC 59.251 55.000 0.00 0.00 38.99 6.13
1987 12779 2.555757 CCTACCGTACTTAATCTCCCGG 59.444 54.545 0.00 0.00 41.09 5.73
1989 12781 3.255395 GCTCCTACCGTACTTAATCTCCC 59.745 52.174 0.00 0.00 0.00 4.30
1992 12784 2.292845 GCGCTCCTACCGTACTTAATCT 59.707 50.000 0.00 0.00 0.00 2.40
1993 12785 2.033801 TGCGCTCCTACCGTACTTAATC 59.966 50.000 9.73 0.00 0.00 1.75
1994 12786 2.026641 TGCGCTCCTACCGTACTTAAT 58.973 47.619 9.73 0.00 0.00 1.40
1998 12790 1.378250 AGTGCGCTCCTACCGTACT 60.378 57.895 9.73 0.00 44.66 2.73
1999 12791 1.226603 CAGTGCGCTCCTACCGTAC 60.227 63.158 9.73 0.00 40.77 3.67
2001 12793 1.246056 TTACAGTGCGCTCCTACCGT 61.246 55.000 9.73 0.00 0.00 4.83
2002 12794 0.525668 CTTACAGTGCGCTCCTACCG 60.526 60.000 9.73 0.00 0.00 4.02
2003 12795 0.806492 GCTTACAGTGCGCTCCTACC 60.806 60.000 9.73 0.00 0.00 3.18
2004 12796 0.108804 TGCTTACAGTGCGCTCCTAC 60.109 55.000 9.73 0.00 0.00 3.18
2005 12797 2.272923 TGCTTACAGTGCGCTCCTA 58.727 52.632 9.73 0.00 0.00 2.94
2457 13249 7.645058 AACATCCAATTAATACCCTGTTCTG 57.355 36.000 0.00 0.00 0.00 3.02
2650 13442 2.221169 TCACAAACAGACAGGACATGC 58.779 47.619 0.00 0.00 0.00 4.06
2662 13459 0.467844 AGGCCAGCACATCACAAACA 60.468 50.000 5.01 0.00 0.00 2.83
2669 13466 1.531423 CATATGGAGGCCAGCACATC 58.469 55.000 5.01 0.00 36.75 3.06
2723 13520 4.751098 GTGCAATGCCCATATTGTAAATGG 59.249 41.667 1.53 0.00 43.06 3.16
2736 13533 2.818130 TCTTTCAAAGTGCAATGCCC 57.182 45.000 1.53 0.00 0.00 5.36
2928 13725 5.886960 ACAGGAGATGACAAACAATAAGC 57.113 39.130 0.00 0.00 0.00 3.09
2996 13793 3.490526 CCGAAATGCTTTTGACAAGTTGG 59.509 43.478 7.96 0.00 0.00 3.77
3124 13921 8.873215 TCAGAATAGCTAAGTGCAGTTATTAC 57.127 34.615 14.28 7.55 45.94 1.89
3160 13957 3.307691 CCTTCCTGAGTACCAATCAAGCA 60.308 47.826 0.00 0.00 0.00 3.91
3161 13958 3.274288 CCTTCCTGAGTACCAATCAAGC 58.726 50.000 0.00 0.00 0.00 4.01
3170 13967 3.946558 ACACGATCTACCTTCCTGAGTAC 59.053 47.826 0.00 0.00 0.00 2.73
3207 14004 9.436957 CGTAGCATATTAATGGATCTTACCTTT 57.563 33.333 0.00 0.00 33.38 3.11
3265 14062 6.094603 AGCCTGCAAGAGTAATTAATTGACAG 59.905 38.462 11.05 12.71 34.07 3.51
3268 14065 6.855836 CAAGCCTGCAAGAGTAATTAATTGA 58.144 36.000 11.05 0.00 34.07 2.57
3296 14093 3.228188 TGGCACAACTGAAGAGGAATT 57.772 42.857 0.00 0.00 31.92 2.17
3345 14142 7.390718 CCTAACAAAATGTCCTAGCAGTAAAGT 59.609 37.037 0.00 0.00 0.00 2.66
3416 14213 9.706691 TCGATTCAGTCACTCTTAAATTTAAGT 57.293 29.630 28.59 14.99 40.69 2.24
3453 14250 3.713826 TTTTCTTCAGCGGTCCCTAAT 57.286 42.857 0.00 0.00 0.00 1.73
3494 14291 7.094762 ACTGTGAACTACTAAAGCCAAATTAGC 60.095 37.037 0.00 0.00 34.42 3.09
3516 14313 1.342074 TCCTGCACTTCTAGCACTGT 58.658 50.000 0.00 0.00 37.02 3.55
3556 14353 7.071196 ACAAAGGGTATCATAGTCTGCTGAATA 59.929 37.037 3.18 3.18 0.00 1.75
3644 14441 7.784037 TGGAAAATCCAAACATTGATATCCAG 58.216 34.615 0.00 0.00 45.00 3.86
3679 14476 1.380403 CGCCCACCAACAACACTCAA 61.380 55.000 0.00 0.00 0.00 3.02
3766 14563 7.335673 GGAACCTAGGTATCTATCGGTTAGTAC 59.664 44.444 16.67 0.00 35.46 2.73
3775 14572 7.842887 AAGTTGAGGAACCTAGGTATCTATC 57.157 40.000 16.67 8.51 31.81 2.08
3877 14675 8.629158 ACTAAACAAATTCACATGACAGCTTTA 58.371 29.630 0.00 0.00 0.00 1.85
3981 14779 9.347240 GGCAATACAGCAATATCTTATGGATAT 57.653 33.333 0.00 0.00 46.29 1.63
4009 14808 4.503296 GGTGACAGCCGGATGTTTATCTAT 60.503 45.833 28.52 0.00 32.25 1.98
4023 14822 2.976490 ATGCAGGAGGGTGACAGCC 61.976 63.158 16.14 16.14 35.59 4.85
4025 14824 1.077930 CCATGCAGGAGGGTGACAG 60.078 63.158 0.00 0.00 41.22 3.51
4049 14848 6.643388 AGCTTGGACATTGGGATTTATTTTC 58.357 36.000 0.00 0.00 0.00 2.29
4057 14856 4.026052 CCTTTAAGCTTGGACATTGGGAT 58.974 43.478 9.86 0.00 0.00 3.85
4062 14861 6.670695 ATGAAACCTTTAAGCTTGGACATT 57.329 33.333 9.86 0.90 0.00 2.71
4089 14888 4.166919 AGGAATCCCCCTAATCAAGAACAG 59.833 45.833 0.00 0.00 34.07 3.16
4105 14904 6.064717 AGCCTTGTGATACAATTAGGAATCC 58.935 40.000 0.00 0.00 37.48 3.01
4186 14985 2.930950 TCCTTATAGGCACCAACATGC 58.069 47.619 0.00 0.00 45.34 4.06
4187 14986 4.978099 AGATCCTTATAGGCACCAACATG 58.022 43.478 0.00 0.00 34.61 3.21
4188 14987 6.240002 CCTTAGATCCTTATAGGCACCAACAT 60.240 42.308 0.00 0.00 34.61 2.71
4189 14988 5.071788 CCTTAGATCCTTATAGGCACCAACA 59.928 44.000 0.00 0.00 34.61 3.33
4190 14989 5.552178 CCTTAGATCCTTATAGGCACCAAC 58.448 45.833 0.00 0.00 34.61 3.77
4191 14990 5.825593 CCTTAGATCCTTATAGGCACCAA 57.174 43.478 0.00 0.00 34.61 3.67
4263 15062 5.079998 ACATATCTGGTCTGGTATCCTCA 57.920 43.478 0.00 0.00 0.00 3.86
4417 15216 2.100584 GTCAACACAATGGGCAAACAGA 59.899 45.455 0.00 0.00 0.00 3.41
4431 15230 4.258702 AGGTGTATCAGAGTGTCAACAC 57.741 45.455 5.11 5.11 46.77 3.32
4500 15302 1.133637 TGCACTTCCCTTGTAAGGCAA 60.134 47.619 5.11 0.00 45.10 4.52
4613 15415 2.904866 TGGTCGCAGCCAACCAAC 60.905 61.111 11.16 0.00 42.48 3.77
4634 15436 6.437477 ACATATCATCGACACCATACCTACAT 59.563 38.462 0.00 0.00 0.00 2.29
4659 15461 5.299531 CGTATATCTTCCTCACACTTCCTGA 59.700 44.000 0.00 0.00 0.00 3.86
4669 15471 3.829026 AGCAGCATCGTATATCTTCCTCA 59.171 43.478 0.00 0.00 0.00 3.86
4694 15496 4.025858 TGCTCCTCTGGTGCAGCC 62.026 66.667 14.36 5.89 45.45 4.85
4795 15597 4.261363 GGCATGATAGAAAGGTAAGCTTGC 60.261 45.833 9.86 7.80 0.00 4.01
4842 15644 1.807165 CCGCCCGCAGATATCATCG 60.807 63.158 5.32 7.50 0.00 3.84
4913 15715 5.405063 AAGCTAACTAGAGGGGAGTATCA 57.595 43.478 0.00 0.00 36.25 2.15
4932 15735 4.423732 TGAAGCAACTGTTTCAGAAAAGC 58.576 39.130 5.03 0.00 39.71 3.51
4960 15763 3.405831 TGTTCCAGATCTGCAGAAGTTG 58.594 45.455 22.50 17.81 0.00 3.16
4969 15772 3.583806 GATATCGCCTGTTCCAGATCTG 58.416 50.000 16.24 16.24 32.44 2.90
4991 15794 1.852067 CGGTTTCCCTTTGCAGGTCG 61.852 60.000 0.00 0.00 38.79 4.79
5036 15839 2.270257 GCTCTTGTGCATGTGCCCA 61.270 57.895 2.07 0.00 41.18 5.36
5075 15878 1.613925 CCGAAGGCGATCATCTTCCTA 59.386 52.381 15.27 0.00 46.14 2.94
5164 15967 2.764128 TGGAGATCGTGGAGGGGC 60.764 66.667 0.00 0.00 0.00 5.80
5195 15998 0.531532 ATGCCGATTCTTGGAGCTCG 60.532 55.000 7.83 0.00 0.00 5.03
5216 16019 4.343323 CGTGACATGGGCCCCACA 62.343 66.667 22.27 11.30 35.80 4.17
5348 16151 1.065551 CGTCACATATGCTCACGAGGA 59.934 52.381 13.68 0.00 32.08 3.71
5352 16155 2.194800 AGACGTCACATATGCTCACG 57.805 50.000 19.50 16.15 36.54 4.35
5401 16204 3.188048 CACTCTTTTAACAGCTCCAGCAG 59.812 47.826 0.48 0.00 45.16 4.24
5415 16230 3.347216 ACACAGCAACTCACACTCTTTT 58.653 40.909 0.00 0.00 0.00 2.27
5417 16232 2.698855 ACACAGCAACTCACACTCTT 57.301 45.000 0.00 0.00 0.00 2.85
5418 16233 3.321968 TCATACACAGCAACTCACACTCT 59.678 43.478 0.00 0.00 0.00 3.24
5419 16234 3.653344 TCATACACAGCAACTCACACTC 58.347 45.455 0.00 0.00 0.00 3.51
5420 16235 3.751479 TCATACACAGCAACTCACACT 57.249 42.857 0.00 0.00 0.00 3.55
5424 16239 2.412870 CCGTTCATACACAGCAACTCA 58.587 47.619 0.00 0.00 0.00 3.41
5440 16255 4.379174 GTGTCATGCACTCCCGTT 57.621 55.556 11.51 0.00 44.41 4.44
5451 16266 1.285962 CTTCCCCAATCCCAGTGTCAT 59.714 52.381 0.00 0.00 0.00 3.06
5476 16291 1.005215 AGGCCTCTTCAACCAGGAATG 59.995 52.381 0.00 0.00 30.32 2.67
5488 16303 1.633774 TCTCTCGTTGAAGGCCTCTT 58.366 50.000 5.23 0.00 35.62 2.85
5489 16304 1.859302 ATCTCTCGTTGAAGGCCTCT 58.141 50.000 5.23 0.00 0.00 3.69
5514 16329 1.819632 CCACTGCGGTAGGAATGCC 60.820 63.158 0.00 0.00 0.00 4.40
5517 16332 1.905512 GACCCACTGCGGTAGGAAT 59.094 57.895 17.74 0.00 35.79 3.01
5526 16342 2.035576 CCCTAGTAATACGACCCACTGC 59.964 54.545 0.00 0.00 0.00 4.40
5537 16353 2.358898 GTCGAACGTGCCCCTAGTAATA 59.641 50.000 0.00 0.00 0.00 0.98
5538 16354 1.135721 GTCGAACGTGCCCCTAGTAAT 59.864 52.381 0.00 0.00 0.00 1.89
5546 16362 2.358247 ATGTGGTCGAACGTGCCC 60.358 61.111 0.00 0.00 0.00 5.36
5563 16379 1.205055 TCCTCTAGCTCTCTCACGGA 58.795 55.000 0.00 0.00 0.00 4.69
5570 16386 3.511146 CCTGGATCATTCCTCTAGCTCTC 59.489 52.174 0.00 0.00 43.07 3.20
5571 16387 3.509442 CCTGGATCATTCCTCTAGCTCT 58.491 50.000 0.00 0.00 43.07 4.09
5572 16388 2.566724 CCCTGGATCATTCCTCTAGCTC 59.433 54.545 0.00 0.00 43.07 4.09
5573 16389 2.180973 TCCCTGGATCATTCCTCTAGCT 59.819 50.000 0.00 0.00 43.07 3.32
5574 16390 2.614259 TCCCTGGATCATTCCTCTAGC 58.386 52.381 0.00 0.00 43.07 3.42
5575 16391 4.166539 ACATCCCTGGATCATTCCTCTAG 58.833 47.826 0.00 0.00 43.07 2.43
5576 16392 4.219392 ACATCCCTGGATCATTCCTCTA 57.781 45.455 0.00 0.00 43.07 2.43
5577 16393 3.071967 ACATCCCTGGATCATTCCTCT 57.928 47.619 0.00 0.00 43.07 3.69
5578 16394 3.393941 AGAACATCCCTGGATCATTCCTC 59.606 47.826 12.83 0.00 43.07 3.71
5579 16395 3.137913 CAGAACATCCCTGGATCATTCCT 59.862 47.826 12.83 3.00 43.07 3.36
5580 16396 3.137176 TCAGAACATCCCTGGATCATTCC 59.863 47.826 12.83 0.00 42.94 3.01
5581 16397 4.428294 TCAGAACATCCCTGGATCATTC 57.572 45.455 0.00 10.02 31.62 2.67
5582 16398 4.868172 TTCAGAACATCCCTGGATCATT 57.132 40.909 0.00 0.00 31.62 2.57
5583 16399 4.868172 TTTCAGAACATCCCTGGATCAT 57.132 40.909 0.00 0.00 31.62 2.45
5584 16400 4.656100 TTTTCAGAACATCCCTGGATCA 57.344 40.909 0.00 0.00 31.62 2.92
5585 16401 5.012893 AGTTTTTCAGAACATCCCTGGATC 58.987 41.667 0.00 0.00 31.62 3.36
5586 16402 4.768968 CAGTTTTTCAGAACATCCCTGGAT 59.231 41.667 0.00 0.00 34.81 3.41
5587 16403 4.144297 CAGTTTTTCAGAACATCCCTGGA 58.856 43.478 0.00 0.00 32.73 3.86
5588 16404 3.305608 GCAGTTTTTCAGAACATCCCTGG 60.306 47.826 0.00 0.00 32.73 4.45
5589 16405 3.571401 AGCAGTTTTTCAGAACATCCCTG 59.429 43.478 0.00 0.00 31.94 4.45
5590 16406 3.837355 AGCAGTTTTTCAGAACATCCCT 58.163 40.909 0.00 0.00 31.94 4.20
5591 16407 4.379918 GCTAGCAGTTTTTCAGAACATCCC 60.380 45.833 10.63 0.00 31.94 3.85
5592 16408 4.670221 CGCTAGCAGTTTTTCAGAACATCC 60.670 45.833 16.45 0.00 31.94 3.51
5593 16409 4.083802 ACGCTAGCAGTTTTTCAGAACATC 60.084 41.667 16.45 0.00 31.94 3.06
5594 16410 3.815401 ACGCTAGCAGTTTTTCAGAACAT 59.185 39.130 16.45 0.00 31.94 2.71
5595 16411 3.002246 CACGCTAGCAGTTTTTCAGAACA 59.998 43.478 16.45 0.00 31.94 3.18
5596 16412 3.002348 ACACGCTAGCAGTTTTTCAGAAC 59.998 43.478 16.45 0.00 0.00 3.01
5597 16413 3.002246 CACACGCTAGCAGTTTTTCAGAA 59.998 43.478 16.45 0.00 0.00 3.02
5598 16414 2.543848 CACACGCTAGCAGTTTTTCAGA 59.456 45.455 16.45 0.00 0.00 3.27
5599 16415 2.908634 CACACGCTAGCAGTTTTTCAG 58.091 47.619 16.45 3.67 0.00 3.02
5600 16416 1.002900 GCACACGCTAGCAGTTTTTCA 60.003 47.619 16.45 0.00 34.30 2.69
5601 16417 1.674908 GCACACGCTAGCAGTTTTTC 58.325 50.000 16.45 0.00 34.30 2.29
5602 16418 3.845625 GCACACGCTAGCAGTTTTT 57.154 47.368 16.45 0.00 34.30 1.94
5613 16429 1.586154 ATTTACTGGCCAGCACACGC 61.586 55.000 33.06 0.00 38.99 5.34
5623 16439 5.123979 ACCGATTTCAGAAGAATTTACTGGC 59.876 40.000 0.00 0.00 32.89 4.85
5655 16472 4.946784 AACAGGAACATACTCGAATTGC 57.053 40.909 0.00 0.00 0.00 3.56
5686 16516 9.629878 TGGGATAAGTTAAAACTCTTACAAACA 57.370 29.630 0.00 0.00 38.57 2.83
5707 16537 7.695074 ATCCAAAAATATTTCACCATGGGAT 57.305 32.000 18.09 7.03 0.00 3.85
5716 16546 9.859427 CAAGTGAGCTAATCCAAAAATATTTCA 57.141 29.630 0.10 0.00 0.00 2.69
5731 16561 6.203530 CACTGATTTCTTGTCAAGTGAGCTAA 59.796 38.462 12.30 0.00 31.93 3.09
5732 16562 5.698089 CACTGATTTCTTGTCAAGTGAGCTA 59.302 40.000 12.30 0.00 31.93 3.32
5763 16593 0.391793 GCTAGGTTGCTCCAGGACAC 60.392 60.000 0.00 0.00 39.02 3.67
5779 16609 1.278127 GGAGTTGCCAGGTAGTTGCTA 59.722 52.381 0.00 0.00 36.34 3.49
5781 16611 1.298859 CGGAGTTGCCAGGTAGTTGC 61.299 60.000 0.00 0.00 35.94 4.17
5782 16612 0.320374 TCGGAGTTGCCAGGTAGTTG 59.680 55.000 0.00 0.00 35.94 3.16
5783 16613 1.053424 TTCGGAGTTGCCAGGTAGTT 58.947 50.000 0.00 0.00 35.94 2.24
5784 16614 1.053424 TTTCGGAGTTGCCAGGTAGT 58.947 50.000 0.00 0.00 35.94 2.73
5785 16615 2.009774 CATTTCGGAGTTGCCAGGTAG 58.990 52.381 0.00 0.00 35.94 3.18
5786 16616 1.948611 GCATTTCGGAGTTGCCAGGTA 60.949 52.381 3.60 0.00 35.94 3.08
5787 16617 1.244019 GCATTTCGGAGTTGCCAGGT 61.244 55.000 3.60 0.00 35.94 4.00
5788 16618 1.243342 TGCATTTCGGAGTTGCCAGG 61.243 55.000 10.51 0.00 35.51 4.45
5789 16619 0.597568 TTGCATTTCGGAGTTGCCAG 59.402 50.000 10.51 0.00 35.51 4.85
5790 16620 1.000385 CTTTGCATTTCGGAGTTGCCA 60.000 47.619 10.51 0.00 35.51 4.92
5791 16621 1.669795 CCTTTGCATTTCGGAGTTGCC 60.670 52.381 10.51 0.00 35.51 4.52
5810 16640 1.456331 CTCCCAATCCCATGCCACC 60.456 63.158 0.00 0.00 0.00 4.61
5829 16659 4.338879 AGCAAGGTTAATCAGATGCAAGT 58.661 39.130 11.98 0.00 36.30 3.16
5840 16670 4.953940 TTCCAAGCAAAGCAAGGTTAAT 57.046 36.364 0.00 0.00 0.00 1.40
5854 16684 1.511850 GCCAACCATGTTTTCCAAGC 58.488 50.000 0.00 0.00 0.00 4.01
5868 16698 2.190161 GGTTTGTCAAGAAACGCCAAC 58.810 47.619 0.00 0.00 36.80 3.77
5874 16704 5.670485 AGGAATTTGGGTTTGTCAAGAAAC 58.330 37.500 0.00 0.00 35.45 2.78
5923 16753 9.305925 GCATAAAATCAACCTCTGGAAAAATAG 57.694 33.333 0.00 0.00 0.00 1.73
5984 16814 1.764571 TTCCAGCGATAATCCCCCGG 61.765 60.000 0.00 0.00 0.00 5.73
5996 16826 1.153469 GAGAGCTTCCCTTCCAGCG 60.153 63.158 0.00 0.00 41.24 5.18
6022 16852 2.490903 GGCATTGCTGTTTCTGTCAGAT 59.509 45.455 8.82 0.00 35.20 2.90
6023 16853 1.881973 GGCATTGCTGTTTCTGTCAGA 59.118 47.619 8.82 0.00 35.20 3.27
6026 16856 2.798976 TTGGCATTGCTGTTTCTGTC 57.201 45.000 8.82 0.00 0.00 3.51
6028 16858 3.187637 CCAATTTGGCATTGCTGTTTCTG 59.812 43.478 8.82 0.15 0.00 3.02
6029 16859 3.404899 CCAATTTGGCATTGCTGTTTCT 58.595 40.909 8.82 0.00 0.00 2.52
6030 16860 3.817148 CCAATTTGGCATTGCTGTTTC 57.183 42.857 8.82 0.00 0.00 2.78
6050 16880 3.245284 CGCCATAGTGTGTATTGTACTGC 59.755 47.826 0.00 0.00 0.00 4.40
6051 16881 4.430007 ACGCCATAGTGTGTATTGTACTG 58.570 43.478 0.00 0.00 34.74 2.74
6091 16936 7.808672 TGGAATTTGTGATCATTCATTTTTGC 58.191 30.769 0.00 0.00 33.56 3.68
6115 16960 0.524862 GCCACCTGAGCAGAAACATG 59.475 55.000 0.00 0.00 0.00 3.21
6117 16962 1.228245 GGCCACCTGAGCAGAAACA 60.228 57.895 0.00 0.00 0.00 2.83
6174 17019 0.911769 CCATGCTGAGGAGGTTGGTA 59.088 55.000 0.00 0.00 0.00 3.25
6217 17062 4.546570 AGGCTTAAAAATGTCGAAAGCAC 58.453 39.130 15.43 6.97 43.36 4.40
6241 17086 4.704833 GGTGGCAGAGCGGCTTCA 62.705 66.667 2.97 0.00 41.89 3.02
6279 17124 4.624015 ACTGTTTGAAACTGGATGCATTG 58.376 39.130 17.27 0.00 34.98 2.82
6283 17128 2.622942 TGGACTGTTTGAAACTGGATGC 59.377 45.455 17.27 5.33 34.98 3.91


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.