Multiple sequence alignment - TraesCS7D01G147500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G147500 chr7D 100.000 3182 0 0 1 3182 94420920 94424101 0.000000e+00 5877.0
1 TraesCS7D01G147500 chr7D 90.262 688 38 11 3 684 596557206 596556542 0.000000e+00 872.0
2 TraesCS7D01G147500 chr7D 92.580 566 34 8 2418 2980 576645031 576644471 0.000000e+00 806.0
3 TraesCS7D01G147500 chr7D 91.711 567 40 7 2417 2980 145920049 145919487 0.000000e+00 780.0
4 TraesCS7D01G147500 chr7D 91.358 567 37 10 2418 2980 590879811 590879253 0.000000e+00 765.0
5 TraesCS7D01G147500 chr7D 82.778 180 16 10 683 861 596556509 596556344 2.560000e-31 147.0
6 TraesCS7D01G147500 chr7A 95.350 1570 54 10 861 2417 97755198 97756761 0.000000e+00 2477.0
7 TraesCS7D01G147500 chr7A 94.313 211 9 3 2974 3182 658924548 658924339 1.420000e-83 320.0
8 TraesCS7D01G147500 chr7B 94.455 1569 69 9 861 2417 48339221 48340783 0.000000e+00 2399.0
9 TraesCS7D01G147500 chr7B 90.552 688 36 7 3 681 671814107 671814774 0.000000e+00 883.0
10 TraesCS7D01G147500 chr5D 96.193 683 4 2 1 680 476031308 476030645 0.000000e+00 1098.0
11 TraesCS7D01G147500 chr5D 95.608 683 8 2 1 680 511133214 511133877 0.000000e+00 1075.0
12 TraesCS7D01G147500 chr5D 94.860 681 13 3 1 678 326593325 326593986 0.000000e+00 1044.0
13 TraesCS7D01G147500 chr5D 87.790 819 43 25 1 782 560356163 560356961 0.000000e+00 905.0
14 TraesCS7D01G147500 chr5D 89.927 685 40 11 3 681 28989183 28989844 0.000000e+00 856.0
15 TraesCS7D01G147500 chr5D 91.434 572 40 9 2416 2983 508156422 508156988 0.000000e+00 776.0
16 TraesCS7D01G147500 chr5D 91.327 565 43 6 2418 2980 324410470 324409910 0.000000e+00 767.0
17 TraesCS7D01G147500 chr5D 95.853 217 4 4 2970 3182 193124431 193124646 2.350000e-91 346.0
18 TraesCS7D01G147500 chr5D 94.475 181 6 4 678 856 511133907 511134085 3.130000e-70 276.0
19 TraesCS7D01G147500 chr5D 98.039 153 3 0 683 835 326594025 326594177 1.880000e-67 267.0
20 TraesCS7D01G147500 chr5D 98.039 153 3 0 683 835 476030608 476030456 1.880000e-67 267.0
21 TraesCS7D01G147500 chr5D 92.000 100 8 0 683 782 28989880 28989979 1.190000e-29 141.0
22 TraesCS7D01G147500 chr2D 96.193 683 4 2 1 680 42003347 42002684 0.000000e+00 1098.0
23 TraesCS7D01G147500 chr2D 93.298 567 30 7 2418 2980 276936748 276936186 0.000000e+00 830.0
24 TraesCS7D01G147500 chr2D 92.769 567 34 6 2417 2980 425744799 425744237 0.000000e+00 813.0
25 TraesCS7D01G147500 chr2D 91.696 578 39 8 2406 2980 285349003 285349574 0.000000e+00 793.0
26 TraesCS7D01G147500 chr2D 95.735 211 6 2 2974 3182 560745471 560745262 1.410000e-88 337.0
27 TraesCS7D01G147500 chr2D 96.078 153 6 0 683 835 42002647 42002495 1.900000e-62 250.0
28 TraesCS7D01G147500 chr2D 95.775 71 2 1 773 842 184108449 184108519 2.590000e-21 113.0
29 TraesCS7D01G147500 chr1D 96.047 683 5 2 1 680 393755100 393754437 0.000000e+00 1092.0
30 TraesCS7D01G147500 chr1D 91.840 576 37 10 2409 2981 444890188 444890756 0.000000e+00 795.0
31 TraesCS7D01G147500 chr1D 97.386 153 4 0 683 835 393754400 393754248 8.750000e-66 261.0
32 TraesCS7D01G147500 chr4B 89.255 819 58 9 28 835 511811399 511810600 0.000000e+00 998.0
33 TraesCS7D01G147500 chr3D 95.827 623 4 5 1 620 582149753 582150356 0.000000e+00 987.0
34 TraesCS7D01G147500 chr3D 97.101 207 4 1 2978 3182 463074039 463074245 6.530000e-92 348.0
35 TraesCS7D01G147500 chr3D 96.117 206 7 1 2978 3182 365118721 365118516 5.090000e-88 335.0
36 TraesCS7D01G147500 chr3D 96.135 207 5 2 2978 3182 524012268 524012473 5.090000e-88 335.0
37 TraesCS7D01G147500 chr3D 96.732 153 5 0 683 835 582150387 582150539 4.070000e-64 255.0
38 TraesCS7D01G147500 chr3D 90.476 126 12 0 556 681 400448199 400448324 1.960000e-37 167.0
39 TraesCS7D01G147500 chr6B 90.000 690 36 10 3 681 283380792 283381459 0.000000e+00 861.0
40 TraesCS7D01G147500 chr6B 88.077 520 29 8 176 681 283381641 283382141 1.270000e-163 586.0
41 TraesCS7D01G147500 chr6B 84.564 149 12 6 687 835 283381499 283381636 1.540000e-28 137.0
42 TraesCS7D01G147500 chr6B 98.361 61 1 0 775 835 460719646 460719586 1.210000e-19 108.0
43 TraesCS7D01G147500 chr5B 87.069 696 53 11 3 684 181576082 181575410 0.000000e+00 752.0
44 TraesCS7D01G147500 chr5B 95.556 45 2 0 791 835 536025621 536025665 4.400000e-09 73.1
45 TraesCS7D01G147500 chr4D 97.073 205 4 1 2978 3182 442393029 442393231 8.450000e-91 344.0
46 TraesCS7D01G147500 chr1A 94.884 215 9 2 2969 3182 16028606 16028819 5.090000e-88 335.0
47 TraesCS7D01G147500 chrUn 94.787 211 8 3 2974 3182 10306002 10305793 3.060000e-85 326.0
48 TraesCS7D01G147500 chrUn 85.882 85 6 6 753 835 164915243 164915323 5.660000e-13 86.1
49 TraesCS7D01G147500 chrUn 85.882 85 6 6 753 835 332870453 332870533 5.660000e-13 86.1
50 TraesCS7D01G147500 chr6D 81.373 306 36 9 39 334 463885746 463886040 2.470000e-56 230.0
51 TraesCS7D01G147500 chr1B 85.340 191 28 0 491 681 647049545 647049735 6.960000e-47 198.0
52 TraesCS7D01G147500 chr1B 95.918 49 1 1 787 835 70202184 70202231 9.460000e-11 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G147500 chr7D 94420920 94424101 3181 False 5877.0 5877 100.0000 1 3182 1 chr7D.!!$F1 3181
1 TraesCS7D01G147500 chr7D 576644471 576645031 560 True 806.0 806 92.5800 2418 2980 1 chr7D.!!$R2 562
2 TraesCS7D01G147500 chr7D 145919487 145920049 562 True 780.0 780 91.7110 2417 2980 1 chr7D.!!$R1 563
3 TraesCS7D01G147500 chr7D 590879253 590879811 558 True 765.0 765 91.3580 2418 2980 1 chr7D.!!$R3 562
4 TraesCS7D01G147500 chr7D 596556344 596557206 862 True 509.5 872 86.5200 3 861 2 chr7D.!!$R4 858
5 TraesCS7D01G147500 chr7A 97755198 97756761 1563 False 2477.0 2477 95.3500 861 2417 1 chr7A.!!$F1 1556
6 TraesCS7D01G147500 chr7B 48339221 48340783 1562 False 2399.0 2399 94.4550 861 2417 1 chr7B.!!$F1 1556
7 TraesCS7D01G147500 chr7B 671814107 671814774 667 False 883.0 883 90.5520 3 681 1 chr7B.!!$F2 678
8 TraesCS7D01G147500 chr5D 560356163 560356961 798 False 905.0 905 87.7900 1 782 1 chr5D.!!$F3 781
9 TraesCS7D01G147500 chr5D 508156422 508156988 566 False 776.0 776 91.4340 2416 2983 1 chr5D.!!$F2 567
10 TraesCS7D01G147500 chr5D 324409910 324410470 560 True 767.0 767 91.3270 2418 2980 1 chr5D.!!$R1 562
11 TraesCS7D01G147500 chr5D 476030456 476031308 852 True 682.5 1098 97.1160 1 835 2 chr5D.!!$R2 834
12 TraesCS7D01G147500 chr5D 511133214 511134085 871 False 675.5 1075 95.0415 1 856 2 chr5D.!!$F6 855
13 TraesCS7D01G147500 chr5D 326593325 326594177 852 False 655.5 1044 96.4495 1 835 2 chr5D.!!$F5 834
14 TraesCS7D01G147500 chr5D 28989183 28989979 796 False 498.5 856 90.9635 3 782 2 chr5D.!!$F4 779
15 TraesCS7D01G147500 chr2D 276936186 276936748 562 True 830.0 830 93.2980 2418 2980 1 chr2D.!!$R1 562
16 TraesCS7D01G147500 chr2D 425744237 425744799 562 True 813.0 813 92.7690 2417 2980 1 chr2D.!!$R2 563
17 TraesCS7D01G147500 chr2D 285349003 285349574 571 False 793.0 793 91.6960 2406 2980 1 chr2D.!!$F2 574
18 TraesCS7D01G147500 chr2D 42002495 42003347 852 True 674.0 1098 96.1355 1 835 2 chr2D.!!$R4 834
19 TraesCS7D01G147500 chr1D 444890188 444890756 568 False 795.0 795 91.8400 2409 2981 1 chr1D.!!$F1 572
20 TraesCS7D01G147500 chr1D 393754248 393755100 852 True 676.5 1092 96.7165 1 835 2 chr1D.!!$R1 834
21 TraesCS7D01G147500 chr4B 511810600 511811399 799 True 998.0 998 89.2550 28 835 1 chr4B.!!$R1 807
22 TraesCS7D01G147500 chr3D 582149753 582150539 786 False 621.0 987 96.2795 1 835 2 chr3D.!!$F4 834
23 TraesCS7D01G147500 chr6B 283380792 283382141 1349 False 528.0 861 87.5470 3 835 3 chr6B.!!$F1 832
24 TraesCS7D01G147500 chr5B 181575410 181576082 672 True 752.0 752 87.0690 3 684 1 chr5B.!!$R1 681

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
909 968 0.460284 ACGTAGGAAGCAGGCAATCG 60.46 55.0 0.0 0.0 0.0 3.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2439 2609 0.955905 CAAACCCCTTAACACCCACG 59.044 55.0 0.0 0.0 0.0 4.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
131 133 5.463724 AGAGATCAAAGAACGAACAGTCAAC 59.536 40.000 0.00 0.00 0.00 3.18
681 701 4.577677 TGGGCTGTTGCTGGCGAA 62.578 61.111 0.00 0.00 39.59 4.70
685 739 2.684843 GCTGTTGCTGGCGAAGAGG 61.685 63.158 0.00 0.00 36.03 3.69
694 748 1.289380 GGCGAAGAGGAGAACGTGT 59.711 57.895 0.00 0.00 0.00 4.49
896 955 4.868067 ACTTGACAGAAACACTACGTAGG 58.132 43.478 25.63 16.59 0.00 3.18
909 968 0.460284 ACGTAGGAAGCAGGCAATCG 60.460 55.000 0.00 0.00 0.00 3.34
912 971 0.980754 TAGGAAGCAGGCAATCGGGA 60.981 55.000 0.00 0.00 0.00 5.14
1260 1380 2.125512 GGCGCGATCAACCTGTCT 60.126 61.111 12.10 0.00 0.00 3.41
1862 1982 0.040692 CTCCGTTTCGACACTGACGA 60.041 55.000 0.00 0.00 37.69 4.20
2106 2258 3.998672 GAGTGGGTCACGGCGGAA 61.999 66.667 13.24 0.00 39.64 4.30
2296 2453 0.400213 TCTTTCCTTGTCGCCATGGT 59.600 50.000 14.67 0.00 37.23 3.55
2297 2454 0.804989 CTTTCCTTGTCGCCATGGTC 59.195 55.000 14.67 4.79 37.23 4.02
2298 2455 0.953471 TTTCCTTGTCGCCATGGTCG 60.953 55.000 14.67 17.10 37.23 4.79
2299 2456 2.796483 TTCCTTGTCGCCATGGTCGG 62.796 60.000 22.59 10.18 37.23 4.79
2327 2484 3.667360 ACTTCTGGAATGCAATTTTGGC 58.333 40.909 0.00 0.00 36.07 4.52
2344 2501 8.877779 CAATTTTGGCCAATTCGTCATTTATTA 58.122 29.630 21.26 0.00 0.00 0.98
2430 2600 0.179145 ACAGAAGGACGCCGATAACG 60.179 55.000 0.00 0.00 39.43 3.18
2456 2626 1.228337 GCGTGGGTGTTAAGGGGTT 60.228 57.895 0.00 0.00 0.00 4.11
2590 2760 3.959535 CCTACATGTGGGCAAAACAAT 57.040 42.857 16.04 0.00 0.00 2.71
2593 2763 5.410067 CCTACATGTGGGCAAAACAATTAG 58.590 41.667 16.04 0.00 0.00 1.73
2625 2795 1.621072 CCTCTCTCAGCCACCTACCTT 60.621 57.143 0.00 0.00 0.00 3.50
2813 2985 2.633967 TCAAGTGCCAGATGCCATTTTT 59.366 40.909 0.00 0.00 40.16 1.94
2885 3057 7.526359 GCCATGATTTGAAAACTTTAGGGGTTA 60.526 37.037 0.00 0.00 0.00 2.85
2921 3093 6.145056 CACTAAGCAGTTGCCATGTATGGTA 61.145 44.000 12.21 5.20 40.79 3.25
2943 3115 3.417101 TGGTTTACTACAGTTGCCATGG 58.583 45.455 7.63 7.63 0.00 3.66
2977 3149 3.182152 AGGAGTTGCCACCTACTAACAT 58.818 45.455 0.00 0.00 40.02 2.71
2978 3150 4.359105 AGGAGTTGCCACCTACTAACATA 58.641 43.478 0.00 0.00 40.02 2.29
2979 3151 4.406003 AGGAGTTGCCACCTACTAACATAG 59.594 45.833 0.00 0.00 40.02 2.23
2980 3152 4.404715 GGAGTTGCCACCTACTAACATAGA 59.595 45.833 0.00 0.00 36.34 1.98
2982 3154 5.978814 AGTTGCCACCTACTAACATAGAAG 58.021 41.667 0.00 0.00 0.00 2.85
2984 3156 6.212791 AGTTGCCACCTACTAACATAGAAGAA 59.787 38.462 0.00 0.00 0.00 2.52
2985 3157 5.974108 TGCCACCTACTAACATAGAAGAAC 58.026 41.667 0.00 0.00 0.00 3.01
2986 3158 5.041940 GCCACCTACTAACATAGAAGAACG 58.958 45.833 0.00 0.00 0.00 3.95
2987 3159 5.393896 GCCACCTACTAACATAGAAGAACGT 60.394 44.000 0.00 0.00 0.00 3.99
2988 3160 6.264088 CCACCTACTAACATAGAAGAACGTC 58.736 44.000 0.00 0.00 0.00 4.34
2989 3161 6.264088 CACCTACTAACATAGAAGAACGTCC 58.736 44.000 0.00 0.00 0.00 4.79
2990 3162 5.065731 ACCTACTAACATAGAAGAACGTCCG 59.934 44.000 0.00 0.00 0.00 4.79
2991 3163 5.065731 CCTACTAACATAGAAGAACGTCCGT 59.934 44.000 0.00 0.00 0.00 4.69
2992 3164 4.730657 ACTAACATAGAAGAACGTCCGTG 58.269 43.478 0.00 0.00 0.00 4.94
2993 3165 1.992170 ACATAGAAGAACGTCCGTGC 58.008 50.000 0.00 0.00 0.00 5.34
2994 3166 0.914551 CATAGAAGAACGTCCGTGCG 59.085 55.000 0.00 0.00 37.94 5.34
3001 3173 3.932313 ACGTCCGTGCGTTGCAAC 61.932 61.111 19.89 19.89 43.04 4.17
3011 3183 3.302344 GTTGCAACGGGGCCACAT 61.302 61.111 14.90 0.00 30.39 3.21
3012 3184 2.522923 TTGCAACGGGGCCACATT 60.523 55.556 5.46 0.00 0.00 2.71
3013 3185 1.228583 TTGCAACGGGGCCACATTA 60.229 52.632 5.46 0.00 0.00 1.90
3014 3186 0.827925 TTGCAACGGGGCCACATTAA 60.828 50.000 5.46 0.00 0.00 1.40
3015 3187 1.214325 GCAACGGGGCCACATTAAC 59.786 57.895 5.46 0.00 0.00 2.01
3016 3188 1.248101 GCAACGGGGCCACATTAACT 61.248 55.000 5.46 0.00 0.00 2.24
3017 3189 1.253100 CAACGGGGCCACATTAACTT 58.747 50.000 5.46 0.00 0.00 2.66
3018 3190 1.616374 CAACGGGGCCACATTAACTTT 59.384 47.619 5.46 0.00 0.00 2.66
3019 3191 2.820787 CAACGGGGCCACATTAACTTTA 59.179 45.455 5.46 0.00 0.00 1.85
3020 3192 3.157750 ACGGGGCCACATTAACTTTAA 57.842 42.857 5.46 0.00 0.00 1.52
3021 3193 3.086282 ACGGGGCCACATTAACTTTAAG 58.914 45.455 5.46 0.00 0.00 1.85
3022 3194 3.244981 ACGGGGCCACATTAACTTTAAGA 60.245 43.478 5.46 0.00 0.00 2.10
3023 3195 3.377172 CGGGGCCACATTAACTTTAAGAG 59.623 47.826 5.46 0.00 0.00 2.85
3024 3196 4.341487 GGGGCCACATTAACTTTAAGAGT 58.659 43.478 4.39 0.00 41.47 3.24
3026 3198 5.105877 GGGGCCACATTAACTTTAAGAGTTC 60.106 44.000 4.39 0.00 45.40 3.01
3027 3199 5.475564 GGGCCACATTAACTTTAAGAGTTCA 59.524 40.000 4.39 0.00 45.40 3.18
3028 3200 6.015772 GGGCCACATTAACTTTAAGAGTTCAA 60.016 38.462 4.39 2.81 45.40 2.69
3029 3201 7.309805 GGGCCACATTAACTTTAAGAGTTCAAT 60.310 37.037 4.39 4.32 45.40 2.57
3030 3202 8.736244 GGCCACATTAACTTTAAGAGTTCAATA 58.264 33.333 0.00 0.00 45.40 1.90
3062 3234 8.667076 TTCTCATACATATCAAGTGACATTGG 57.333 34.615 0.00 0.00 0.00 3.16
3063 3235 6.707608 TCTCATACATATCAAGTGACATTGGC 59.292 38.462 0.00 0.00 0.00 4.52
3064 3236 5.466393 TCATACATATCAAGTGACATTGGCG 59.534 40.000 0.00 0.00 0.00 5.69
3065 3237 3.872696 ACATATCAAGTGACATTGGCGA 58.127 40.909 0.00 0.00 0.00 5.54
3066 3238 3.623060 ACATATCAAGTGACATTGGCGAC 59.377 43.478 0.00 0.00 0.00 5.19
3067 3239 1.453155 ATCAAGTGACATTGGCGACC 58.547 50.000 0.00 0.00 0.00 4.79
3068 3240 0.107643 TCAAGTGACATTGGCGACCA 59.892 50.000 0.00 0.00 0.00 4.02
3069 3241 1.167851 CAAGTGACATTGGCGACCAT 58.832 50.000 0.00 0.00 31.53 3.55
3070 3242 1.541147 CAAGTGACATTGGCGACCATT 59.459 47.619 0.00 0.00 31.53 3.16
3071 3243 1.909700 AGTGACATTGGCGACCATTT 58.090 45.000 0.00 0.00 31.53 2.32
3072 3244 2.238521 AGTGACATTGGCGACCATTTT 58.761 42.857 0.00 0.00 31.53 1.82
3073 3245 2.627699 AGTGACATTGGCGACCATTTTT 59.372 40.909 0.00 0.00 31.53 1.94
3074 3246 3.823873 AGTGACATTGGCGACCATTTTTA 59.176 39.130 0.00 0.00 31.53 1.52
3075 3247 3.917985 GTGACATTGGCGACCATTTTTAC 59.082 43.478 0.00 0.00 31.53 2.01
3076 3248 3.057174 TGACATTGGCGACCATTTTTACC 60.057 43.478 0.00 0.00 31.53 2.85
3077 3249 2.894126 ACATTGGCGACCATTTTTACCA 59.106 40.909 0.00 0.00 31.53 3.25
3078 3250 3.513515 ACATTGGCGACCATTTTTACCAT 59.486 39.130 0.00 0.00 31.53 3.55
3079 3251 4.020662 ACATTGGCGACCATTTTTACCATT 60.021 37.500 0.00 0.00 31.53 3.16
3080 3252 5.186021 ACATTGGCGACCATTTTTACCATTA 59.814 36.000 0.00 0.00 31.53 1.90
3081 3253 5.723672 TTGGCGACCATTTTTACCATTAA 57.276 34.783 0.00 0.00 31.53 1.40
3082 3254 5.723672 TGGCGACCATTTTTACCATTAAA 57.276 34.783 0.00 0.00 0.00 1.52
3083 3255 6.287589 TGGCGACCATTTTTACCATTAAAT 57.712 33.333 0.00 0.00 0.00 1.40
3084 3256 6.334202 TGGCGACCATTTTTACCATTAAATC 58.666 36.000 0.00 0.00 0.00 2.17
3085 3257 5.751509 GGCGACCATTTTTACCATTAAATCC 59.248 40.000 0.00 0.00 0.00 3.01
3086 3258 6.406512 GGCGACCATTTTTACCATTAAATCCT 60.407 38.462 0.00 0.00 0.00 3.24
3087 3259 6.695713 GCGACCATTTTTACCATTAAATCCTC 59.304 38.462 0.00 0.00 0.00 3.71
3088 3260 7.629652 GCGACCATTTTTACCATTAAATCCTCA 60.630 37.037 0.00 0.00 0.00 3.86
3089 3261 7.700656 CGACCATTTTTACCATTAAATCCTCAC 59.299 37.037 0.00 0.00 0.00 3.51
3090 3262 8.429237 ACCATTTTTACCATTAAATCCTCACA 57.571 30.769 0.00 0.00 0.00 3.58
3091 3263 8.311109 ACCATTTTTACCATTAAATCCTCACAC 58.689 33.333 0.00 0.00 0.00 3.82
3092 3264 8.310382 CCATTTTTACCATTAAATCCTCACACA 58.690 33.333 0.00 0.00 0.00 3.72
3093 3265 9.139174 CATTTTTACCATTAAATCCTCACACAC 57.861 33.333 0.00 0.00 0.00 3.82
3094 3266 7.825331 TTTTACCATTAAATCCTCACACACA 57.175 32.000 0.00 0.00 0.00 3.72
3095 3267 6.811253 TTACCATTAAATCCTCACACACAC 57.189 37.500 0.00 0.00 0.00 3.82
3096 3268 4.724399 ACCATTAAATCCTCACACACACA 58.276 39.130 0.00 0.00 0.00 3.72
3097 3269 4.518970 ACCATTAAATCCTCACACACACAC 59.481 41.667 0.00 0.00 0.00 3.82
3098 3270 4.761739 CCATTAAATCCTCACACACACACT 59.238 41.667 0.00 0.00 0.00 3.55
3099 3271 5.106555 CCATTAAATCCTCACACACACACTC 60.107 44.000 0.00 0.00 0.00 3.51
3100 3272 3.845781 AAATCCTCACACACACACTCT 57.154 42.857 0.00 0.00 0.00 3.24
3101 3273 3.393089 AATCCTCACACACACACTCTC 57.607 47.619 0.00 0.00 0.00 3.20
3102 3274 1.040646 TCCTCACACACACACTCTCC 58.959 55.000 0.00 0.00 0.00 3.71
3103 3275 0.034059 CCTCACACACACACTCTCCC 59.966 60.000 0.00 0.00 0.00 4.30
3104 3276 1.043816 CTCACACACACACTCTCCCT 58.956 55.000 0.00 0.00 0.00 4.20
3105 3277 1.000283 CTCACACACACACTCTCCCTC 60.000 57.143 0.00 0.00 0.00 4.30
3106 3278 0.034059 CACACACACACTCTCCCTCC 59.966 60.000 0.00 0.00 0.00 4.30
3107 3279 1.122019 ACACACACACTCTCCCTCCC 61.122 60.000 0.00 0.00 0.00 4.30
3108 3280 0.833834 CACACACACTCTCCCTCCCT 60.834 60.000 0.00 0.00 0.00 4.20
3109 3281 0.543174 ACACACACTCTCCCTCCCTC 60.543 60.000 0.00 0.00 0.00 4.30
3110 3282 0.252012 CACACACTCTCCCTCCCTCT 60.252 60.000 0.00 0.00 0.00 3.69
3111 3283 0.489567 ACACACTCTCCCTCCCTCTT 59.510 55.000 0.00 0.00 0.00 2.85
3112 3284 1.190643 CACACTCTCCCTCCCTCTTC 58.809 60.000 0.00 0.00 0.00 2.87
3113 3285 0.041982 ACACTCTCCCTCCCTCTTCC 59.958 60.000 0.00 0.00 0.00 3.46
3114 3286 0.338120 CACTCTCCCTCCCTCTTCCT 59.662 60.000 0.00 0.00 0.00 3.36
3115 3287 0.634465 ACTCTCCCTCCCTCTTCCTC 59.366 60.000 0.00 0.00 0.00 3.71
3116 3288 0.633921 CTCTCCCTCCCTCTTCCTCA 59.366 60.000 0.00 0.00 0.00 3.86
3117 3289 0.336737 TCTCCCTCCCTCTTCCTCAC 59.663 60.000 0.00 0.00 0.00 3.51
3118 3290 0.338120 CTCCCTCCCTCTTCCTCACT 59.662 60.000 0.00 0.00 0.00 3.41
3119 3291 0.336737 TCCCTCCCTCTTCCTCACTC 59.663 60.000 0.00 0.00 0.00 3.51
3120 3292 0.338120 CCCTCCCTCTTCCTCACTCT 59.662 60.000 0.00 0.00 0.00 3.24
3121 3293 1.687996 CCCTCCCTCTTCCTCACTCTC 60.688 61.905 0.00 0.00 0.00 3.20
3122 3294 1.287739 CCTCCCTCTTCCTCACTCTCT 59.712 57.143 0.00 0.00 0.00 3.10
3123 3295 2.654863 CTCCCTCTTCCTCACTCTCTC 58.345 57.143 0.00 0.00 0.00 3.20
3124 3296 2.242196 CTCCCTCTTCCTCACTCTCTCT 59.758 54.545 0.00 0.00 0.00 3.10
3125 3297 2.241176 TCCCTCTTCCTCACTCTCTCTC 59.759 54.545 0.00 0.00 0.00 3.20
3126 3298 2.654863 CCTCTTCCTCACTCTCTCTCC 58.345 57.143 0.00 0.00 0.00 3.71
3127 3299 2.654863 CTCTTCCTCACTCTCTCTCCC 58.345 57.143 0.00 0.00 0.00 4.30
3128 3300 1.286553 TCTTCCTCACTCTCTCTCCCC 59.713 57.143 0.00 0.00 0.00 4.81
3129 3301 0.336737 TTCCTCACTCTCTCTCCCCC 59.663 60.000 0.00 0.00 0.00 5.40
3130 3302 0.553862 TCCTCACTCTCTCTCCCCCT 60.554 60.000 0.00 0.00 0.00 4.79
3131 3303 0.106217 CCTCACTCTCTCTCCCCCTC 60.106 65.000 0.00 0.00 0.00 4.30
3132 3304 0.926293 CTCACTCTCTCTCCCCCTCT 59.074 60.000 0.00 0.00 0.00 3.69
3133 3305 0.923358 TCACTCTCTCTCCCCCTCTC 59.077 60.000 0.00 0.00 0.00 3.20
3134 3306 0.106217 CACTCTCTCTCCCCCTCTCC 60.106 65.000 0.00 0.00 0.00 3.71
3135 3307 1.293683 ACTCTCTCTCCCCCTCTCCC 61.294 65.000 0.00 0.00 0.00 4.30
3136 3308 0.998945 CTCTCTCTCCCCCTCTCCCT 60.999 65.000 0.00 0.00 0.00 4.20
3137 3309 0.996762 TCTCTCTCCCCCTCTCCCTC 60.997 65.000 0.00 0.00 0.00 4.30
3138 3310 0.998945 CTCTCTCCCCCTCTCCCTCT 60.999 65.000 0.00 0.00 0.00 3.69
3139 3311 0.996762 TCTCTCCCCCTCTCCCTCTC 60.997 65.000 0.00 0.00 0.00 3.20
3140 3312 0.998945 CTCTCCCCCTCTCCCTCTCT 60.999 65.000 0.00 0.00 0.00 3.10
3141 3313 0.996762 TCTCCCCCTCTCCCTCTCTC 60.997 65.000 0.00 0.00 0.00 3.20
3142 3314 0.998945 CTCCCCCTCTCCCTCTCTCT 60.999 65.000 0.00 0.00 0.00 3.10
3143 3315 0.556380 TCCCCCTCTCCCTCTCTCTT 60.556 60.000 0.00 0.00 0.00 2.85
3144 3316 0.341609 CCCCCTCTCCCTCTCTCTTT 59.658 60.000 0.00 0.00 0.00 2.52
3145 3317 1.691163 CCCCCTCTCCCTCTCTCTTTC 60.691 61.905 0.00 0.00 0.00 2.62
3146 3318 1.290732 CCCCTCTCCCTCTCTCTTTCT 59.709 57.143 0.00 0.00 0.00 2.52
3147 3319 2.516277 CCCCTCTCCCTCTCTCTTTCTA 59.484 54.545 0.00 0.00 0.00 2.10
3148 3320 3.052490 CCCCTCTCCCTCTCTCTTTCTAA 60.052 52.174 0.00 0.00 0.00 2.10
3149 3321 3.958147 CCCTCTCCCTCTCTCTTTCTAAC 59.042 52.174 0.00 0.00 0.00 2.34
3150 3322 4.570933 CCCTCTCCCTCTCTCTTTCTAACA 60.571 50.000 0.00 0.00 0.00 2.41
3151 3323 4.401202 CCTCTCCCTCTCTCTTTCTAACAC 59.599 50.000 0.00 0.00 0.00 3.32
3152 3324 4.999310 TCTCCCTCTCTCTTTCTAACACA 58.001 43.478 0.00 0.00 0.00 3.72
3153 3325 4.767928 TCTCCCTCTCTCTTTCTAACACAC 59.232 45.833 0.00 0.00 0.00 3.82
3154 3326 4.480115 TCCCTCTCTCTTTCTAACACACA 58.520 43.478 0.00 0.00 0.00 3.72
3155 3327 4.281182 TCCCTCTCTCTTTCTAACACACAC 59.719 45.833 0.00 0.00 0.00 3.82
3156 3328 4.039245 CCCTCTCTCTTTCTAACACACACA 59.961 45.833 0.00 0.00 0.00 3.72
3157 3329 4.985409 CCTCTCTCTTTCTAACACACACAC 59.015 45.833 0.00 0.00 0.00 3.82
3158 3330 5.451937 CCTCTCTCTTTCTAACACACACACA 60.452 44.000 0.00 0.00 0.00 3.72
3159 3331 6.161855 TCTCTCTTTCTAACACACACACAT 57.838 37.500 0.00 0.00 0.00 3.21
3160 3332 7.284919 TCTCTCTTTCTAACACACACACATA 57.715 36.000 0.00 0.00 0.00 2.29
3161 3333 7.896811 TCTCTCTTTCTAACACACACACATAT 58.103 34.615 0.00 0.00 0.00 1.78
3162 3334 8.029522 TCTCTCTTTCTAACACACACACATATC 58.970 37.037 0.00 0.00 0.00 1.63
3163 3335 7.097192 TCTCTTTCTAACACACACACATATCC 58.903 38.462 0.00 0.00 0.00 2.59
3164 3336 6.764379 TCTTTCTAACACACACACATATCCA 58.236 36.000 0.00 0.00 0.00 3.41
3165 3337 7.394016 TCTTTCTAACACACACACATATCCAT 58.606 34.615 0.00 0.00 0.00 3.41
3166 3338 7.549134 TCTTTCTAACACACACACATATCCATC 59.451 37.037 0.00 0.00 0.00 3.51
3167 3339 6.544928 TCTAACACACACACATATCCATCT 57.455 37.500 0.00 0.00 0.00 2.90
3168 3340 6.946340 TCTAACACACACACATATCCATCTT 58.054 36.000 0.00 0.00 0.00 2.40
3169 3341 8.073467 TCTAACACACACACATATCCATCTTA 57.927 34.615 0.00 0.00 0.00 2.10
3170 3342 8.704668 TCTAACACACACACATATCCATCTTAT 58.295 33.333 0.00 0.00 0.00 1.73
3171 3343 9.330063 CTAACACACACACATATCCATCTTATT 57.670 33.333 0.00 0.00 0.00 1.40
3172 3344 7.558161 ACACACACACATATCCATCTTATTG 57.442 36.000 0.00 0.00 0.00 1.90
3173 3345 6.543465 ACACACACACATATCCATCTTATTGG 59.457 38.462 0.00 0.00 38.18 3.16
3174 3346 6.016860 CACACACACATATCCATCTTATTGGG 60.017 42.308 0.00 0.00 37.37 4.12
3175 3347 6.064060 CACACACATATCCATCTTATTGGGT 58.936 40.000 0.00 0.00 37.37 4.51
3176 3348 7.147391 ACACACACATATCCATCTTATTGGGTA 60.147 37.037 0.00 0.00 36.79 3.69
3177 3349 7.173218 CACACACATATCCATCTTATTGGGTAC 59.827 40.741 0.00 0.00 35.20 3.34
3178 3350 6.368791 CACACATATCCATCTTATTGGGTACG 59.631 42.308 0.00 0.00 35.20 3.67
3179 3351 5.874810 CACATATCCATCTTATTGGGTACGG 59.125 44.000 0.00 0.00 35.20 4.02
3180 3352 5.045869 ACATATCCATCTTATTGGGTACGGG 60.046 44.000 0.00 0.00 35.20 5.28
3181 3353 3.049108 TCCATCTTATTGGGTACGGGA 57.951 47.619 0.00 0.00 37.37 5.14
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
131 133 8.289907 AAGATCCTTTCGAGGTAAGGTTCTCG 62.290 46.154 20.59 6.42 44.92 4.04
681 701 0.112606 TCCCTCACACGTTCTCCTCT 59.887 55.000 0.00 0.00 0.00 3.69
685 739 1.000955 ACATGTCCCTCACACGTTCTC 59.999 52.381 0.00 0.00 38.04 2.87
694 748 2.605607 CCAGCCCACATGTCCCTCA 61.606 63.158 0.00 0.00 0.00 3.86
837 891 9.111519 TCATCTCTATCTCTATCTCCACTTACT 57.888 37.037 0.00 0.00 0.00 2.24
838 892 9.733556 TTCATCTCTATCTCTATCTCCACTTAC 57.266 37.037 0.00 0.00 0.00 2.34
839 893 9.958180 CTTCATCTCTATCTCTATCTCCACTTA 57.042 37.037 0.00 0.00 0.00 2.24
888 947 2.474816 GATTGCCTGCTTCCTACGTAG 58.525 52.381 15.92 15.92 0.00 3.51
896 955 0.749454 ACATCCCGATTGCCTGCTTC 60.749 55.000 0.00 0.00 0.00 3.86
1327 1447 2.030562 CAGGAGGACAAACCGCGT 59.969 61.111 4.92 0.00 44.74 6.01
1371 1491 1.227674 GCCGGAGAATCGCTTGGAT 60.228 57.895 5.05 0.00 36.78 3.41
1398 1518 1.153823 CGAGAAGGCGACGGAATGT 60.154 57.895 0.00 0.00 0.00 2.71
1401 1521 2.257371 CACGAGAAGGCGACGGAA 59.743 61.111 0.00 0.00 34.83 4.30
1554 1674 2.124693 CGAGAGGAGGAGTCCAGCC 61.125 68.421 12.86 12.39 46.80 4.85
1557 1677 2.438614 CGCGAGAGGAGGAGTCCA 60.439 66.667 12.86 0.00 46.80 4.02
1882 2002 1.067821 GTCTCCATCCTCCATGTCGTC 59.932 57.143 0.00 0.00 0.00 4.20
2296 2453 3.679917 GCATTCCAGAAGTTCTCATCCGA 60.680 47.826 1.26 0.00 0.00 4.55
2297 2454 2.611292 GCATTCCAGAAGTTCTCATCCG 59.389 50.000 1.26 0.00 0.00 4.18
2298 2455 3.614092 TGCATTCCAGAAGTTCTCATCC 58.386 45.455 1.26 0.00 0.00 3.51
2299 2456 5.831702 ATTGCATTCCAGAAGTTCTCATC 57.168 39.130 1.26 0.00 0.00 2.92
2354 2522 6.159293 GGATGAAACAAATCTTTGACCTTCC 58.841 40.000 9.53 9.78 40.55 3.46
2439 2609 0.955905 CAAACCCCTTAACACCCACG 59.044 55.000 0.00 0.00 0.00 4.94
2456 2626 3.422796 ACCGTACAAAATATGTGGGCAA 58.577 40.909 0.00 0.00 43.77 4.52
2473 2643 2.308690 GCTGGTCCTCTTAGATACCGT 58.691 52.381 8.68 0.00 34.60 4.83
2474 2644 1.614413 GGCTGGTCCTCTTAGATACCG 59.386 57.143 8.68 5.79 34.60 4.02
2558 2728 1.474478 ACATGTAGGCGTGTGAGAGAG 59.526 52.381 0.00 0.00 42.72 3.20
2559 2729 1.545841 ACATGTAGGCGTGTGAGAGA 58.454 50.000 0.00 0.00 42.72 3.10
2587 2757 1.423845 GTCGTGTGGGCGCTAATTG 59.576 57.895 7.64 0.00 0.00 2.32
2588 2758 1.743995 GGTCGTGTGGGCGCTAATT 60.744 57.895 7.64 0.00 0.00 1.40
2589 2759 2.125269 GGTCGTGTGGGCGCTAAT 60.125 61.111 7.64 0.00 0.00 1.73
2590 2760 3.291101 GAGGTCGTGTGGGCGCTAA 62.291 63.158 7.64 0.00 0.00 3.09
2668 2838 1.600107 GTCCGGACCATGGCAACTA 59.400 57.895 24.75 0.00 37.61 2.24
2885 3057 4.158015 ACTGCTTAGTGTTAGTAGGTGGT 58.842 43.478 0.00 0.00 30.65 4.16
2921 3093 4.016444 CCATGGCAACTGTAGTAAACCAT 58.984 43.478 0.00 7.28 36.28 3.55
2943 3115 4.098807 TGGCAACTCCTAAGGTTTTCAAAC 59.901 41.667 0.00 0.00 35.47 2.93
2977 3149 1.951510 ACGCACGGACGTTCTTCTA 59.048 52.632 0.00 0.00 45.75 2.10
2978 3150 2.726274 ACGCACGGACGTTCTTCT 59.274 55.556 0.00 0.00 45.75 2.85
2985 3157 4.986531 CGTTGCAACGCACGGACG 62.987 66.667 35.89 13.92 46.06 4.79
2994 3166 1.528292 TAATGTGGCCCCGTTGCAAC 61.528 55.000 19.89 19.89 35.65 4.17
2995 3167 0.827925 TTAATGTGGCCCCGTTGCAA 60.828 50.000 0.00 0.00 0.00 4.08
2996 3168 1.228583 TTAATGTGGCCCCGTTGCA 60.229 52.632 0.00 0.00 0.00 4.08
2997 3169 1.214325 GTTAATGTGGCCCCGTTGC 59.786 57.895 0.00 0.00 0.00 4.17
2998 3170 1.253100 AAGTTAATGTGGCCCCGTTG 58.747 50.000 0.00 0.00 0.00 4.10
2999 3171 2.003937 AAAGTTAATGTGGCCCCGTT 57.996 45.000 0.00 0.00 0.00 4.44
3000 3172 2.883122 TAAAGTTAATGTGGCCCCGT 57.117 45.000 0.00 0.00 0.00 5.28
3001 3173 3.349022 TCTTAAAGTTAATGTGGCCCCG 58.651 45.455 0.00 0.00 0.00 5.73
3002 3174 4.341487 ACTCTTAAAGTTAATGTGGCCCC 58.659 43.478 0.00 0.00 33.03 5.80
3003 3175 5.977489 AACTCTTAAAGTTAATGTGGCCC 57.023 39.130 0.00 0.00 46.55 5.80
3036 3208 9.281371 CCAATGTCACTTGATATGTATGAGAAT 57.719 33.333 0.00 0.00 0.00 2.40
3037 3209 7.227314 GCCAATGTCACTTGATATGTATGAGAA 59.773 37.037 0.00 0.00 0.00 2.87
3038 3210 6.707608 GCCAATGTCACTTGATATGTATGAGA 59.292 38.462 0.00 0.00 0.00 3.27
3039 3211 6.347160 CGCCAATGTCACTTGATATGTATGAG 60.347 42.308 0.00 0.00 0.00 2.90
3040 3212 5.466393 CGCCAATGTCACTTGATATGTATGA 59.534 40.000 0.00 0.00 0.00 2.15
3041 3213 5.466393 TCGCCAATGTCACTTGATATGTATG 59.534 40.000 0.00 0.00 0.00 2.39
3042 3214 5.466728 GTCGCCAATGTCACTTGATATGTAT 59.533 40.000 0.00 0.00 0.00 2.29
3043 3215 4.808895 GTCGCCAATGTCACTTGATATGTA 59.191 41.667 0.00 0.00 0.00 2.29
3044 3216 3.623060 GTCGCCAATGTCACTTGATATGT 59.377 43.478 0.00 0.00 0.00 2.29
3045 3217 3.002656 GGTCGCCAATGTCACTTGATATG 59.997 47.826 0.00 0.00 0.00 1.78
3046 3218 3.206150 GGTCGCCAATGTCACTTGATAT 58.794 45.455 0.00 0.00 0.00 1.63
3047 3219 2.027653 TGGTCGCCAATGTCACTTGATA 60.028 45.455 0.00 0.00 0.00 2.15
3048 3220 1.271325 TGGTCGCCAATGTCACTTGAT 60.271 47.619 0.00 0.00 0.00 2.57
3049 3221 0.107643 TGGTCGCCAATGTCACTTGA 59.892 50.000 0.00 0.00 0.00 3.02
3050 3222 1.167851 ATGGTCGCCAATGTCACTTG 58.832 50.000 2.68 0.00 36.95 3.16
3051 3223 1.909700 AATGGTCGCCAATGTCACTT 58.090 45.000 2.68 0.00 36.95 3.16
3052 3224 1.909700 AAATGGTCGCCAATGTCACT 58.090 45.000 2.68 0.00 36.95 3.41
3053 3225 2.723124 AAAATGGTCGCCAATGTCAC 57.277 45.000 2.68 0.00 36.95 3.67
3054 3226 3.057174 GGTAAAAATGGTCGCCAATGTCA 60.057 43.478 2.68 0.00 36.95 3.58
3055 3227 3.057174 TGGTAAAAATGGTCGCCAATGTC 60.057 43.478 2.68 0.00 36.95 3.06
3056 3228 2.894126 TGGTAAAAATGGTCGCCAATGT 59.106 40.909 2.68 0.00 36.95 2.71
3057 3229 3.584406 TGGTAAAAATGGTCGCCAATG 57.416 42.857 2.68 0.00 36.95 2.82
3058 3230 4.817318 AATGGTAAAAATGGTCGCCAAT 57.183 36.364 2.68 0.00 36.95 3.16
3059 3231 5.723672 TTAATGGTAAAAATGGTCGCCAA 57.276 34.783 2.68 0.00 36.95 4.52
3060 3232 5.723672 TTTAATGGTAAAAATGGTCGCCA 57.276 34.783 1.01 1.01 38.19 5.69
3061 3233 5.751509 GGATTTAATGGTAAAAATGGTCGCC 59.248 40.000 0.00 0.00 32.98 5.54
3062 3234 6.569780 AGGATTTAATGGTAAAAATGGTCGC 58.430 36.000 0.00 0.00 32.98 5.19
3063 3235 7.700656 GTGAGGATTTAATGGTAAAAATGGTCG 59.299 37.037 0.00 0.00 32.98 4.79
3064 3236 8.527810 TGTGAGGATTTAATGGTAAAAATGGTC 58.472 33.333 0.00 0.00 32.98 4.02
3065 3237 8.311109 GTGTGAGGATTTAATGGTAAAAATGGT 58.689 33.333 0.00 0.00 32.98 3.55
3066 3238 8.310382 TGTGTGAGGATTTAATGGTAAAAATGG 58.690 33.333 0.00 0.00 32.98 3.16
3067 3239 9.139174 GTGTGTGAGGATTTAATGGTAAAAATG 57.861 33.333 0.00 0.00 32.98 2.32
3068 3240 8.865090 TGTGTGTGAGGATTTAATGGTAAAAAT 58.135 29.630 0.00 0.00 32.98 1.82
3069 3241 8.138712 GTGTGTGTGAGGATTTAATGGTAAAAA 58.861 33.333 0.00 0.00 32.98 1.94
3070 3242 7.285629 TGTGTGTGTGAGGATTTAATGGTAAAA 59.714 33.333 0.00 0.00 32.98 1.52
3071 3243 6.773200 TGTGTGTGTGAGGATTTAATGGTAAA 59.227 34.615 0.00 0.00 33.76 2.01
3072 3244 6.205853 GTGTGTGTGTGAGGATTTAATGGTAA 59.794 38.462 0.00 0.00 0.00 2.85
3073 3245 5.703592 GTGTGTGTGTGAGGATTTAATGGTA 59.296 40.000 0.00 0.00 0.00 3.25
3074 3246 4.518970 GTGTGTGTGTGAGGATTTAATGGT 59.481 41.667 0.00 0.00 0.00 3.55
3075 3247 4.761739 AGTGTGTGTGTGAGGATTTAATGG 59.238 41.667 0.00 0.00 0.00 3.16
3076 3248 5.702670 AGAGTGTGTGTGTGAGGATTTAATG 59.297 40.000 0.00 0.00 0.00 1.90
3077 3249 5.869579 AGAGTGTGTGTGTGAGGATTTAAT 58.130 37.500 0.00 0.00 0.00 1.40
3078 3250 5.290493 AGAGTGTGTGTGTGAGGATTTAA 57.710 39.130 0.00 0.00 0.00 1.52
3079 3251 4.262463 GGAGAGTGTGTGTGTGAGGATTTA 60.262 45.833 0.00 0.00 0.00 1.40
3080 3252 3.495100 GGAGAGTGTGTGTGTGAGGATTT 60.495 47.826 0.00 0.00 0.00 2.17
3081 3253 2.037772 GGAGAGTGTGTGTGTGAGGATT 59.962 50.000 0.00 0.00 0.00 3.01
3082 3254 1.620819 GGAGAGTGTGTGTGTGAGGAT 59.379 52.381 0.00 0.00 0.00 3.24
3083 3255 1.040646 GGAGAGTGTGTGTGTGAGGA 58.959 55.000 0.00 0.00 0.00 3.71
3084 3256 0.034059 GGGAGAGTGTGTGTGTGAGG 59.966 60.000 0.00 0.00 0.00 3.86
3085 3257 1.000283 GAGGGAGAGTGTGTGTGTGAG 60.000 57.143 0.00 0.00 0.00 3.51
3086 3258 1.040646 GAGGGAGAGTGTGTGTGTGA 58.959 55.000 0.00 0.00 0.00 3.58
3087 3259 0.034059 GGAGGGAGAGTGTGTGTGTG 59.966 60.000 0.00 0.00 0.00 3.82
3088 3260 1.122019 GGGAGGGAGAGTGTGTGTGT 61.122 60.000 0.00 0.00 0.00 3.72
3089 3261 0.833834 AGGGAGGGAGAGTGTGTGTG 60.834 60.000 0.00 0.00 0.00 3.82
3090 3262 0.543174 GAGGGAGGGAGAGTGTGTGT 60.543 60.000 0.00 0.00 0.00 3.72
3091 3263 0.252012 AGAGGGAGGGAGAGTGTGTG 60.252 60.000 0.00 0.00 0.00 3.82
3092 3264 0.489567 AAGAGGGAGGGAGAGTGTGT 59.510 55.000 0.00 0.00 0.00 3.72
3093 3265 1.190643 GAAGAGGGAGGGAGAGTGTG 58.809 60.000 0.00 0.00 0.00 3.82
3094 3266 0.041982 GGAAGAGGGAGGGAGAGTGT 59.958 60.000 0.00 0.00 0.00 3.55
3095 3267 0.338120 AGGAAGAGGGAGGGAGAGTG 59.662 60.000 0.00 0.00 0.00 3.51
3096 3268 0.634465 GAGGAAGAGGGAGGGAGAGT 59.366 60.000 0.00 0.00 0.00 3.24
3097 3269 0.633921 TGAGGAAGAGGGAGGGAGAG 59.366 60.000 0.00 0.00 0.00 3.20
3098 3270 0.336737 GTGAGGAAGAGGGAGGGAGA 59.663 60.000 0.00 0.00 0.00 3.71
3099 3271 0.338120 AGTGAGGAAGAGGGAGGGAG 59.662 60.000 0.00 0.00 0.00 4.30
3100 3272 0.336737 GAGTGAGGAAGAGGGAGGGA 59.663 60.000 0.00 0.00 0.00 4.20
3101 3273 0.338120 AGAGTGAGGAAGAGGGAGGG 59.662 60.000 0.00 0.00 0.00 4.30
3102 3274 1.287739 AGAGAGTGAGGAAGAGGGAGG 59.712 57.143 0.00 0.00 0.00 4.30
3103 3275 2.242196 AGAGAGAGTGAGGAAGAGGGAG 59.758 54.545 0.00 0.00 0.00 4.30
3104 3276 2.241176 GAGAGAGAGTGAGGAAGAGGGA 59.759 54.545 0.00 0.00 0.00 4.20
3105 3277 2.654863 GAGAGAGAGTGAGGAAGAGGG 58.345 57.143 0.00 0.00 0.00 4.30
3106 3278 2.654863 GGAGAGAGAGTGAGGAAGAGG 58.345 57.143 0.00 0.00 0.00 3.69
3107 3279 2.654863 GGGAGAGAGAGTGAGGAAGAG 58.345 57.143 0.00 0.00 0.00 2.85
3108 3280 1.286553 GGGGAGAGAGAGTGAGGAAGA 59.713 57.143 0.00 0.00 0.00 2.87
3109 3281 1.687996 GGGGGAGAGAGAGTGAGGAAG 60.688 61.905 0.00 0.00 0.00 3.46
3110 3282 0.336737 GGGGGAGAGAGAGTGAGGAA 59.663 60.000 0.00 0.00 0.00 3.36
3111 3283 0.553862 AGGGGGAGAGAGAGTGAGGA 60.554 60.000 0.00 0.00 0.00 3.71
3112 3284 0.106217 GAGGGGGAGAGAGAGTGAGG 60.106 65.000 0.00 0.00 0.00 3.86
3113 3285 0.926293 AGAGGGGGAGAGAGAGTGAG 59.074 60.000 0.00 0.00 0.00 3.51
3114 3286 0.923358 GAGAGGGGGAGAGAGAGTGA 59.077 60.000 0.00 0.00 0.00 3.41
3115 3287 0.106217 GGAGAGGGGGAGAGAGAGTG 60.106 65.000 0.00 0.00 0.00 3.51
3116 3288 1.293683 GGGAGAGGGGGAGAGAGAGT 61.294 65.000 0.00 0.00 0.00 3.24
3117 3289 0.998945 AGGGAGAGGGGGAGAGAGAG 60.999 65.000 0.00 0.00 0.00 3.20
3118 3290 0.996762 GAGGGAGAGGGGGAGAGAGA 60.997 65.000 0.00 0.00 0.00 3.10
3119 3291 0.998945 AGAGGGAGAGGGGGAGAGAG 60.999 65.000 0.00 0.00 0.00 3.20
3120 3292 0.996762 GAGAGGGAGAGGGGGAGAGA 60.997 65.000 0.00 0.00 0.00 3.10
3121 3293 0.998945 AGAGAGGGAGAGGGGGAGAG 60.999 65.000 0.00 0.00 0.00 3.20
3122 3294 0.996762 GAGAGAGGGAGAGGGGGAGA 60.997 65.000 0.00 0.00 0.00 3.71
3123 3295 0.998945 AGAGAGAGGGAGAGGGGGAG 60.999 65.000 0.00 0.00 0.00 4.30
3124 3296 0.556380 AAGAGAGAGGGAGAGGGGGA 60.556 60.000 0.00 0.00 0.00 4.81
3125 3297 0.341609 AAAGAGAGAGGGAGAGGGGG 59.658 60.000 0.00 0.00 0.00 5.40
3126 3298 1.290732 AGAAAGAGAGAGGGAGAGGGG 59.709 57.143 0.00 0.00 0.00 4.79
3127 3299 2.846665 AGAAAGAGAGAGGGAGAGGG 57.153 55.000 0.00 0.00 0.00 4.30
3128 3300 4.401202 GTGTTAGAAAGAGAGAGGGAGAGG 59.599 50.000 0.00 0.00 0.00 3.69
3129 3301 5.013547 TGTGTTAGAAAGAGAGAGGGAGAG 58.986 45.833 0.00 0.00 0.00 3.20
3130 3302 4.767928 GTGTGTTAGAAAGAGAGAGGGAGA 59.232 45.833 0.00 0.00 0.00 3.71
3131 3303 4.524714 TGTGTGTTAGAAAGAGAGAGGGAG 59.475 45.833 0.00 0.00 0.00 4.30
3132 3304 4.281182 GTGTGTGTTAGAAAGAGAGAGGGA 59.719 45.833 0.00 0.00 0.00 4.20
3133 3305 4.039245 TGTGTGTGTTAGAAAGAGAGAGGG 59.961 45.833 0.00 0.00 0.00 4.30
3134 3306 4.985409 GTGTGTGTGTTAGAAAGAGAGAGG 59.015 45.833 0.00 0.00 0.00 3.69
3135 3307 5.592054 TGTGTGTGTGTTAGAAAGAGAGAG 58.408 41.667 0.00 0.00 0.00 3.20
3136 3308 5.592104 TGTGTGTGTGTTAGAAAGAGAGA 57.408 39.130 0.00 0.00 0.00 3.10
3137 3309 7.276658 GGATATGTGTGTGTGTTAGAAAGAGAG 59.723 40.741 0.00 0.00 0.00 3.20
3138 3310 7.097192 GGATATGTGTGTGTGTTAGAAAGAGA 58.903 38.462 0.00 0.00 0.00 3.10
3139 3311 6.873605 TGGATATGTGTGTGTGTTAGAAAGAG 59.126 38.462 0.00 0.00 0.00 2.85
3140 3312 6.764379 TGGATATGTGTGTGTGTTAGAAAGA 58.236 36.000 0.00 0.00 0.00 2.52
3141 3313 7.550551 AGATGGATATGTGTGTGTGTTAGAAAG 59.449 37.037 0.00 0.00 0.00 2.62
3142 3314 7.394016 AGATGGATATGTGTGTGTGTTAGAAA 58.606 34.615 0.00 0.00 0.00 2.52
3143 3315 6.946340 AGATGGATATGTGTGTGTGTTAGAA 58.054 36.000 0.00 0.00 0.00 2.10
3144 3316 6.544928 AGATGGATATGTGTGTGTGTTAGA 57.455 37.500 0.00 0.00 0.00 2.10
3145 3317 8.893219 ATAAGATGGATATGTGTGTGTGTTAG 57.107 34.615 0.00 0.00 0.00 2.34
3146 3318 9.108284 CAATAAGATGGATATGTGTGTGTGTTA 57.892 33.333 0.00 0.00 0.00 2.41
3147 3319 7.067372 CCAATAAGATGGATATGTGTGTGTGTT 59.933 37.037 0.00 0.00 43.54 3.32
3148 3320 6.543465 CCAATAAGATGGATATGTGTGTGTGT 59.457 38.462 0.00 0.00 43.54 3.72
3149 3321 6.016860 CCCAATAAGATGGATATGTGTGTGTG 60.017 42.308 0.00 0.00 43.54 3.82
3150 3322 6.064060 CCCAATAAGATGGATATGTGTGTGT 58.936 40.000 0.00 0.00 43.54 3.72
3151 3323 6.064060 ACCCAATAAGATGGATATGTGTGTG 58.936 40.000 0.00 0.00 43.54 3.82
3152 3324 6.266131 ACCCAATAAGATGGATATGTGTGT 57.734 37.500 0.00 0.00 43.54 3.72
3153 3325 6.368791 CGTACCCAATAAGATGGATATGTGTG 59.631 42.308 0.00 0.00 43.54 3.82
3154 3326 6.464222 CGTACCCAATAAGATGGATATGTGT 58.536 40.000 0.00 0.00 43.54 3.72
3155 3327 5.874810 CCGTACCCAATAAGATGGATATGTG 59.125 44.000 0.00 0.00 43.54 3.21
3156 3328 5.045869 CCCGTACCCAATAAGATGGATATGT 60.046 44.000 0.00 0.00 43.54 2.29
3157 3329 5.188948 TCCCGTACCCAATAAGATGGATATG 59.811 44.000 0.00 0.00 43.54 1.78
3158 3330 5.347124 TCCCGTACCCAATAAGATGGATAT 58.653 41.667 0.00 0.00 43.54 1.63
3159 3331 4.754311 TCCCGTACCCAATAAGATGGATA 58.246 43.478 0.00 0.00 43.54 2.59
3160 3332 3.593942 TCCCGTACCCAATAAGATGGAT 58.406 45.455 0.00 0.00 43.54 3.41
3161 3333 3.049108 TCCCGTACCCAATAAGATGGA 57.951 47.619 0.00 0.00 43.54 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.