Multiple sequence alignment - TraesCS7D01G147200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G147200 chr7D 100.000 2583 0 0 1 2583 94004550 94007132 0.000000e+00 4771.0
1 TraesCS7D01G147200 chr7D 93.817 1213 45 15 805 2008 93949573 93948382 0.000000e+00 1797.0
2 TraesCS7D01G147200 chr7D 80.930 215 27 6 135 345 93954026 93953822 9.570000e-35 158.0
3 TraesCS7D01G147200 chr7D 93.182 44 3 0 2235 2278 587734371 587734414 5.970000e-07 65.8
4 TraesCS7D01G147200 chr7B 91.978 1259 62 14 706 1949 47736971 47738205 0.000000e+00 1729.0
5 TraesCS7D01G147200 chr7B 81.284 545 41 24 2088 2582 47738301 47738834 4.030000e-103 385.0
6 TraesCS7D01G147200 chr7A 91.527 1192 59 19 704 1863 97266633 97267814 0.000000e+00 1604.0
7 TraesCS7D01G147200 chr6D 95.556 90 4 0 1000 1089 443741353 443741264 7.450000e-31 145.0
8 TraesCS7D01G147200 chr6D 88.542 96 5 4 1000 1089 443754009 443753914 7.560000e-21 111.0
9 TraesCS7D01G147200 chr6B 95.556 90 4 0 1000 1089 668030020 668029931 7.450000e-31 145.0
10 TraesCS7D01G147200 chr6B 87.368 95 7 3 1000 1089 668136658 668136564 1.260000e-18 104.0
11 TraesCS7D01G147200 chr6A 95.556 90 4 0 1000 1089 591381200 591381111 7.450000e-31 145.0
12 TraesCS7D01G147200 chr2B 89.474 76 8 0 1015 1090 726545804 726545879 2.120000e-16 97.1
13 TraesCS7D01G147200 chr2B 87.500 56 7 0 2232 2287 489338609 489338554 5.970000e-07 65.8
14 TraesCS7D01G147200 chr5A 89.231 65 7 0 2206 2270 668224069 668224005 5.920000e-12 82.4
15 TraesCS7D01G147200 chr1A 85.915 71 8 2 2206 2276 578362851 578362919 9.910000e-10 75.0
16 TraesCS7D01G147200 chr1B 85.484 62 9 0 2217 2278 670280934 670280995 5.970000e-07 65.8
17 TraesCS7D01G147200 chr5D 89.583 48 5 0 2231 2278 511516594 511516547 7.720000e-06 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G147200 chr7D 94004550 94007132 2582 False 4771 4771 100.000 1 2583 1 chr7D.!!$F1 2582
1 TraesCS7D01G147200 chr7D 93948382 93949573 1191 True 1797 1797 93.817 805 2008 1 chr7D.!!$R1 1203
2 TraesCS7D01G147200 chr7B 47736971 47738834 1863 False 1057 1729 86.631 706 2582 2 chr7B.!!$F1 1876
3 TraesCS7D01G147200 chr7A 97266633 97267814 1181 False 1604 1604 91.527 704 1863 1 chr7A.!!$F1 1159

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
900 901 0.036388 ACTAATCACCACCACCAGCG 60.036 55.0 0.0 0.0 0.0 5.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2380 2500 0.106868 CGGGGAGGGTTTATTGGACC 60.107 60.0 0.0 0.0 36.41 4.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.363205 CAAAGACAAAATGGACAAACAAACT 57.637 32.000 0.00 0.00 0.00 2.66
25 26 8.472683 CAAAGACAAAATGGACAAACAAACTA 57.527 30.769 0.00 0.00 0.00 2.24
26 27 8.594687 CAAAGACAAAATGGACAAACAAACTAG 58.405 33.333 0.00 0.00 0.00 2.57
27 28 7.404671 AGACAAAATGGACAAACAAACTAGT 57.595 32.000 0.00 0.00 0.00 2.57
28 29 7.836842 AGACAAAATGGACAAACAAACTAGTT 58.163 30.769 1.12 1.12 0.00 2.24
29 30 8.962679 AGACAAAATGGACAAACAAACTAGTTA 58.037 29.630 8.92 0.00 0.00 2.24
30 31 9.575783 GACAAAATGGACAAACAAACTAGTTAA 57.424 29.630 8.92 0.00 0.00 2.01
31 32 9.930693 ACAAAATGGACAAACAAACTAGTTAAA 57.069 25.926 8.92 0.00 0.00 1.52
38 39 9.726232 GGACAAACAAACTAGTTAAAAAGTAGG 57.274 33.333 8.92 2.58 38.47 3.18
44 45 9.428097 ACAAACTAGTTAAAAAGTAGGATACCG 57.572 33.333 8.92 0.00 44.47 4.02
45 46 9.428097 CAAACTAGTTAAAAAGTAGGATACCGT 57.572 33.333 8.92 0.00 44.47 4.83
46 47 8.992835 AACTAGTTAAAAAGTAGGATACCGTG 57.007 34.615 6.26 0.00 44.47 4.94
47 48 8.353423 ACTAGTTAAAAAGTAGGATACCGTGA 57.647 34.615 0.00 0.00 44.47 4.35
48 49 8.465201 ACTAGTTAAAAAGTAGGATACCGTGAG 58.535 37.037 0.00 0.00 44.47 3.51
49 50 6.104665 AGTTAAAAAGTAGGATACCGTGAGC 58.895 40.000 0.00 0.00 44.47 4.26
50 51 4.546829 AAAAAGTAGGATACCGTGAGCA 57.453 40.909 0.00 0.00 44.47 4.26
51 52 4.755266 AAAAGTAGGATACCGTGAGCAT 57.245 40.909 0.00 0.00 44.47 3.79
52 53 4.755266 AAAGTAGGATACCGTGAGCATT 57.245 40.909 0.00 0.00 44.47 3.56
53 54 4.755266 AAGTAGGATACCGTGAGCATTT 57.245 40.909 0.00 0.00 44.47 2.32
54 55 4.323553 AGTAGGATACCGTGAGCATTTC 57.676 45.455 0.00 0.00 44.47 2.17
55 56 3.961408 AGTAGGATACCGTGAGCATTTCT 59.039 43.478 0.00 0.00 44.47 2.52
56 57 3.914426 AGGATACCGTGAGCATTTCTT 57.086 42.857 0.00 0.00 37.17 2.52
57 58 3.798202 AGGATACCGTGAGCATTTCTTC 58.202 45.455 0.00 0.00 37.17 2.87
58 59 2.872858 GGATACCGTGAGCATTTCTTCC 59.127 50.000 0.00 0.00 0.00 3.46
59 60 3.531538 GATACCGTGAGCATTTCTTCCA 58.468 45.455 0.00 0.00 0.00 3.53
60 61 2.496899 ACCGTGAGCATTTCTTCCAT 57.503 45.000 0.00 0.00 0.00 3.41
61 62 2.359900 ACCGTGAGCATTTCTTCCATC 58.640 47.619 0.00 0.00 0.00 3.51
62 63 2.290260 ACCGTGAGCATTTCTTCCATCA 60.290 45.455 0.00 0.00 0.00 3.07
63 64 2.947652 CCGTGAGCATTTCTTCCATCAT 59.052 45.455 0.00 0.00 0.00 2.45
64 65 4.129380 CCGTGAGCATTTCTTCCATCATA 58.871 43.478 0.00 0.00 0.00 2.15
65 66 4.212847 CCGTGAGCATTTCTTCCATCATAG 59.787 45.833 0.00 0.00 0.00 2.23
66 67 4.212847 CGTGAGCATTTCTTCCATCATAGG 59.787 45.833 0.00 0.00 0.00 2.57
67 68 4.023365 GTGAGCATTTCTTCCATCATAGGC 60.023 45.833 0.00 0.00 0.00 3.93
68 69 4.141321 TGAGCATTTCTTCCATCATAGGCT 60.141 41.667 0.00 0.00 0.00 4.58
69 70 4.396522 AGCATTTCTTCCATCATAGGCTC 58.603 43.478 0.00 0.00 0.00 4.70
70 71 4.139786 GCATTTCTTCCATCATAGGCTCA 58.860 43.478 0.00 0.00 0.00 4.26
71 72 4.581824 GCATTTCTTCCATCATAGGCTCAA 59.418 41.667 0.00 0.00 0.00 3.02
72 73 5.243283 GCATTTCTTCCATCATAGGCTCAAT 59.757 40.000 0.00 0.00 0.00 2.57
73 74 6.239232 GCATTTCTTCCATCATAGGCTCAATT 60.239 38.462 0.00 0.00 0.00 2.32
74 75 7.686127 GCATTTCTTCCATCATAGGCTCAATTT 60.686 37.037 0.00 0.00 0.00 1.82
75 76 8.853126 CATTTCTTCCATCATAGGCTCAATTTA 58.147 33.333 0.00 0.00 0.00 1.40
76 77 9.597681 ATTTCTTCCATCATAGGCTCAATTTAT 57.402 29.630 0.00 0.00 0.00 1.40
78 79 9.730705 TTCTTCCATCATAGGCTCAATTTATAG 57.269 33.333 0.00 0.00 0.00 1.31
79 80 7.826252 TCTTCCATCATAGGCTCAATTTATAGC 59.174 37.037 0.00 0.00 38.03 2.97
80 81 7.262990 TCCATCATAGGCTCAATTTATAGCT 57.737 36.000 0.00 0.00 38.80 3.32
81 82 8.379428 TCCATCATAGGCTCAATTTATAGCTA 57.621 34.615 0.00 0.00 38.80 3.32
82 83 8.825774 TCCATCATAGGCTCAATTTATAGCTAA 58.174 33.333 0.00 0.00 38.80 3.09
83 84 9.624373 CCATCATAGGCTCAATTTATAGCTAAT 57.376 33.333 0.00 0.00 38.80 1.73
86 87 9.658799 TCATAGGCTCAATTTATAGCTAATGTC 57.341 33.333 0.00 0.00 38.80 3.06
87 88 8.887717 CATAGGCTCAATTTATAGCTAATGTCC 58.112 37.037 0.00 0.16 38.80 4.02
88 89 7.084268 AGGCTCAATTTATAGCTAATGTCCT 57.916 36.000 0.00 2.18 38.80 3.85
89 90 7.521669 AGGCTCAATTTATAGCTAATGTCCTT 58.478 34.615 0.00 0.00 38.80 3.36
90 91 8.660435 AGGCTCAATTTATAGCTAATGTCCTTA 58.340 33.333 0.00 0.00 38.80 2.69
91 92 9.454859 GGCTCAATTTATAGCTAATGTCCTTAT 57.545 33.333 0.00 0.00 38.80 1.73
162 163 8.306680 TCGTTATCTAAAATATAGCCAACTGC 57.693 34.615 0.00 0.00 41.71 4.40
163 164 7.929245 TCGTTATCTAAAATATAGCCAACTGCA 59.071 33.333 0.00 0.00 44.83 4.41
164 165 8.009974 CGTTATCTAAAATATAGCCAACTGCAC 58.990 37.037 0.00 0.00 44.83 4.57
165 166 8.836413 GTTATCTAAAATATAGCCAACTGCACA 58.164 33.333 0.00 0.00 44.83 4.57
166 167 7.880160 ATCTAAAATATAGCCAACTGCACAA 57.120 32.000 0.00 0.00 44.83 3.33
167 168 7.880160 TCTAAAATATAGCCAACTGCACAAT 57.120 32.000 0.00 0.00 44.83 2.71
168 169 8.292444 TCTAAAATATAGCCAACTGCACAATT 57.708 30.769 0.00 0.00 44.83 2.32
169 170 9.402320 TCTAAAATATAGCCAACTGCACAATTA 57.598 29.630 0.00 0.00 44.83 1.40
172 173 8.469309 AAATATAGCCAACTGCACAATTATCT 57.531 30.769 0.00 0.00 44.83 1.98
173 174 7.678947 ATATAGCCAACTGCACAATTATCTC 57.321 36.000 0.00 0.00 44.83 2.75
174 175 3.689347 AGCCAACTGCACAATTATCTCA 58.311 40.909 0.00 0.00 44.83 3.27
175 176 4.081406 AGCCAACTGCACAATTATCTCAA 58.919 39.130 0.00 0.00 44.83 3.02
176 177 4.523943 AGCCAACTGCACAATTATCTCAAA 59.476 37.500 0.00 0.00 44.83 2.69
177 178 4.860907 GCCAACTGCACAATTATCTCAAAG 59.139 41.667 0.00 0.00 40.77 2.77
178 179 4.860907 CCAACTGCACAATTATCTCAAAGC 59.139 41.667 0.00 0.00 0.00 3.51
179 180 5.463286 CAACTGCACAATTATCTCAAAGCA 58.537 37.500 0.00 0.00 0.00 3.91
182 183 5.300969 TGCACAATTATCTCAAAGCAGAC 57.699 39.130 0.00 0.00 0.00 3.51
183 184 4.761227 TGCACAATTATCTCAAAGCAGACA 59.239 37.500 0.00 0.00 0.00 3.41
184 185 5.091431 GCACAATTATCTCAAAGCAGACAC 58.909 41.667 0.00 0.00 0.00 3.67
185 186 5.335113 GCACAATTATCTCAAAGCAGACACA 60.335 40.000 0.00 0.00 0.00 3.72
186 187 6.671190 CACAATTATCTCAAAGCAGACACAA 58.329 36.000 0.00 0.00 0.00 3.33
187 188 7.140705 CACAATTATCTCAAAGCAGACACAAA 58.859 34.615 0.00 0.00 0.00 2.83
188 189 7.811236 CACAATTATCTCAAAGCAGACACAAAT 59.189 33.333 0.00 0.00 0.00 2.32
189 190 8.362639 ACAATTATCTCAAAGCAGACACAAATT 58.637 29.630 0.00 0.00 0.00 1.82
190 191 9.844790 CAATTATCTCAAAGCAGACACAAATTA 57.155 29.630 0.00 0.00 0.00 1.40
193 194 9.844790 TTATCTCAAAGCAGACACAAATTATTG 57.155 29.630 0.00 0.00 42.46 1.90
194 195 6.680810 TCTCAAAGCAGACACAAATTATTGG 58.319 36.000 0.00 0.00 41.01 3.16
195 196 6.265196 TCTCAAAGCAGACACAAATTATTGGT 59.735 34.615 0.00 0.00 41.01 3.67
196 197 7.446931 TCTCAAAGCAGACACAAATTATTGGTA 59.553 33.333 0.00 0.00 41.01 3.25
197 198 7.592938 TCAAAGCAGACACAAATTATTGGTAG 58.407 34.615 0.00 0.00 41.01 3.18
198 199 5.567138 AGCAGACACAAATTATTGGTAGC 57.433 39.130 0.00 0.00 41.01 3.58
199 200 5.009631 AGCAGACACAAATTATTGGTAGCA 58.990 37.500 0.00 0.00 41.01 3.49
200 201 5.653769 AGCAGACACAAATTATTGGTAGCAT 59.346 36.000 0.00 0.00 41.01 3.79
201 202 5.973565 GCAGACACAAATTATTGGTAGCATC 59.026 40.000 0.00 0.00 41.01 3.91
202 203 6.404623 GCAGACACAAATTATTGGTAGCATCA 60.405 38.462 0.00 0.00 41.01 3.07
203 204 6.968904 CAGACACAAATTATTGGTAGCATCAC 59.031 38.462 0.00 0.00 41.01 3.06
204 205 6.658816 AGACACAAATTATTGGTAGCATCACA 59.341 34.615 0.00 0.00 41.01 3.58
205 206 7.176515 AGACACAAATTATTGGTAGCATCACAA 59.823 33.333 0.00 0.00 41.01 3.33
206 207 7.839907 ACACAAATTATTGGTAGCATCACAAT 58.160 30.769 0.00 0.00 41.01 2.71
207 208 7.975616 ACACAAATTATTGGTAGCATCACAATC 59.024 33.333 0.00 0.00 41.01 2.67
208 209 7.166307 CACAAATTATTGGTAGCATCACAATCG 59.834 37.037 0.00 0.00 41.01 3.34
209 210 7.066887 ACAAATTATTGGTAGCATCACAATCGA 59.933 33.333 0.00 0.00 41.01 3.59
210 211 7.750229 AATTATTGGTAGCATCACAATCGAT 57.250 32.000 0.00 0.00 36.36 3.59
211 212 6.785488 TTATTGGTAGCATCACAATCGATC 57.215 37.500 0.00 0.00 36.36 3.69
212 213 3.111853 TGGTAGCATCACAATCGATCC 57.888 47.619 0.00 0.00 0.00 3.36
213 214 2.224281 TGGTAGCATCACAATCGATCCC 60.224 50.000 0.00 0.00 0.00 3.85
214 215 2.224281 GGTAGCATCACAATCGATCCCA 60.224 50.000 0.00 0.00 0.00 4.37
215 216 2.715749 AGCATCACAATCGATCCCAA 57.284 45.000 0.00 0.00 0.00 4.12
216 217 2.292267 AGCATCACAATCGATCCCAAC 58.708 47.619 0.00 0.00 0.00 3.77
217 218 2.016318 GCATCACAATCGATCCCAACA 58.984 47.619 0.00 0.00 0.00 3.33
218 219 2.223340 GCATCACAATCGATCCCAACAC 60.223 50.000 0.00 0.00 0.00 3.32
219 220 2.107950 TCACAATCGATCCCAACACC 57.892 50.000 0.00 0.00 0.00 4.16
220 221 1.349357 TCACAATCGATCCCAACACCA 59.651 47.619 0.00 0.00 0.00 4.17
221 222 2.158559 CACAATCGATCCCAACACCAA 58.841 47.619 0.00 0.00 0.00 3.67
222 223 2.556189 CACAATCGATCCCAACACCAAA 59.444 45.455 0.00 0.00 0.00 3.28
223 224 3.193267 CACAATCGATCCCAACACCAAAT 59.807 43.478 0.00 0.00 0.00 2.32
224 225 3.443681 ACAATCGATCCCAACACCAAATC 59.556 43.478 0.00 0.00 0.00 2.17
225 226 2.869101 TCGATCCCAACACCAAATCA 57.131 45.000 0.00 0.00 0.00 2.57
226 227 3.147553 TCGATCCCAACACCAAATCAA 57.852 42.857 0.00 0.00 0.00 2.57
227 228 2.817258 TCGATCCCAACACCAAATCAAC 59.183 45.455 0.00 0.00 0.00 3.18
228 229 2.094752 CGATCCCAACACCAAATCAACC 60.095 50.000 0.00 0.00 0.00 3.77
229 230 2.765689 TCCCAACACCAAATCAACCT 57.234 45.000 0.00 0.00 0.00 3.50
230 231 3.039252 TCCCAACACCAAATCAACCTT 57.961 42.857 0.00 0.00 0.00 3.50
231 232 4.186077 TCCCAACACCAAATCAACCTTA 57.814 40.909 0.00 0.00 0.00 2.69
232 233 3.892588 TCCCAACACCAAATCAACCTTAC 59.107 43.478 0.00 0.00 0.00 2.34
233 234 3.639094 CCCAACACCAAATCAACCTTACA 59.361 43.478 0.00 0.00 0.00 2.41
234 235 4.100189 CCCAACACCAAATCAACCTTACAA 59.900 41.667 0.00 0.00 0.00 2.41
235 236 5.395768 CCCAACACCAAATCAACCTTACAAA 60.396 40.000 0.00 0.00 0.00 2.83
236 237 6.109359 CCAACACCAAATCAACCTTACAAAA 58.891 36.000 0.00 0.00 0.00 2.44
237 238 6.036626 CCAACACCAAATCAACCTTACAAAAC 59.963 38.462 0.00 0.00 0.00 2.43
238 239 5.666462 ACACCAAATCAACCTTACAAAACC 58.334 37.500 0.00 0.00 0.00 3.27
239 240 5.423931 ACACCAAATCAACCTTACAAAACCT 59.576 36.000 0.00 0.00 0.00 3.50
240 241 6.608002 ACACCAAATCAACCTTACAAAACCTA 59.392 34.615 0.00 0.00 0.00 3.08
241 242 7.124448 ACACCAAATCAACCTTACAAAACCTAA 59.876 33.333 0.00 0.00 0.00 2.69
242 243 7.982354 CACCAAATCAACCTTACAAAACCTAAA 59.018 33.333 0.00 0.00 0.00 1.85
243 244 8.710239 ACCAAATCAACCTTACAAAACCTAAAT 58.290 29.630 0.00 0.00 0.00 1.40
244 245 9.554395 CCAAATCAACCTTACAAAACCTAAATT 57.446 29.630 0.00 0.00 0.00 1.82
257 258 9.178758 ACAAAACCTAAATTTAAATTTGTGGCA 57.821 25.926 28.45 12.76 38.90 4.92
263 264 9.965748 CCTAAATTTAAATTTGTGGCATAAACG 57.034 29.630 28.45 8.57 38.90 3.60
266 267 7.589574 ATTTAAATTTGTGGCATAAACGACC 57.410 32.000 11.74 0.00 0.00 4.79
267 268 4.864704 AAATTTGTGGCATAAACGACCT 57.135 36.364 11.74 0.00 0.00 3.85
268 269 4.864704 AATTTGTGGCATAAACGACCTT 57.135 36.364 11.74 0.00 0.00 3.50
269 270 4.864704 ATTTGTGGCATAAACGACCTTT 57.135 36.364 11.74 0.00 0.00 3.11
270 271 3.907894 TTGTGGCATAAACGACCTTTC 57.092 42.857 0.00 0.00 0.00 2.62
271 272 2.852449 TGTGGCATAAACGACCTTTCA 58.148 42.857 0.00 0.00 0.00 2.69
272 273 2.550606 TGTGGCATAAACGACCTTTCAC 59.449 45.455 0.00 0.00 0.00 3.18
273 274 2.550606 GTGGCATAAACGACCTTTCACA 59.449 45.455 0.00 0.00 0.00 3.58
274 275 3.190535 GTGGCATAAACGACCTTTCACAT 59.809 43.478 0.00 0.00 0.00 3.21
275 276 3.823873 TGGCATAAACGACCTTTCACATT 59.176 39.130 0.00 0.00 0.00 2.71
276 277 4.279671 TGGCATAAACGACCTTTCACATTT 59.720 37.500 0.00 0.00 0.00 2.32
277 278 5.221342 TGGCATAAACGACCTTTCACATTTT 60.221 36.000 0.00 0.00 0.00 1.82
278 279 6.016192 TGGCATAAACGACCTTTCACATTTTA 60.016 34.615 0.00 0.00 0.00 1.52
279 280 6.864165 GGCATAAACGACCTTTCACATTTTAA 59.136 34.615 0.00 0.00 0.00 1.52
280 281 7.382759 GGCATAAACGACCTTTCACATTTTAAA 59.617 33.333 0.00 0.00 0.00 1.52
281 282 8.211838 GCATAAACGACCTTTCACATTTTAAAC 58.788 33.333 0.00 0.00 0.00 2.01
282 283 9.239002 CATAAACGACCTTTCACATTTTAAACA 57.761 29.630 0.00 0.00 0.00 2.83
283 284 9.804758 ATAAACGACCTTTCACATTTTAAACAA 57.195 25.926 0.00 0.00 0.00 2.83
284 285 8.535690 AAACGACCTTTCACATTTTAAACAAA 57.464 26.923 0.00 0.00 0.00 2.83
285 286 8.710835 AACGACCTTTCACATTTTAAACAAAT 57.289 26.923 0.00 0.00 0.00 2.32
286 287 9.804758 AACGACCTTTCACATTTTAAACAAATA 57.195 25.926 0.00 0.00 0.00 1.40
287 288 9.974980 ACGACCTTTCACATTTTAAACAAATAT 57.025 25.926 0.00 0.00 0.00 1.28
313 314 9.474313 TTTCTTATTAATTGCTCCCAACATAGT 57.526 29.630 0.00 0.00 32.95 2.12
315 316 9.778741 TCTTATTAATTGCTCCCAACATAGTAG 57.221 33.333 0.00 0.00 32.95 2.57
316 317 8.918202 TTATTAATTGCTCCCAACATAGTAGG 57.082 34.615 0.00 0.00 32.95 3.18
317 318 2.710096 TTGCTCCCAACATAGTAGGC 57.290 50.000 0.00 0.00 0.00 3.93
318 319 1.578897 TGCTCCCAACATAGTAGGCA 58.421 50.000 0.00 0.00 0.00 4.75
319 320 2.126882 TGCTCCCAACATAGTAGGCAT 58.873 47.619 0.00 0.00 0.00 4.40
320 321 2.158769 TGCTCCCAACATAGTAGGCATG 60.159 50.000 0.00 0.00 0.00 4.06
321 322 2.498167 CTCCCAACATAGTAGGCATGC 58.502 52.381 9.90 9.90 0.00 4.06
322 323 1.142870 TCCCAACATAGTAGGCATGCC 59.857 52.381 30.12 30.12 0.00 4.40
338 339 7.693969 AGGCATGCCTGATTTAATTACTATC 57.306 36.000 38.23 4.00 46.22 2.08
339 340 7.465116 AGGCATGCCTGATTTAATTACTATCT 58.535 34.615 38.23 7.59 46.22 1.98
340 341 7.609532 AGGCATGCCTGATTTAATTACTATCTC 59.390 37.037 38.23 3.22 46.22 2.75
341 342 7.609532 GGCATGCCTGATTTAATTACTATCTCT 59.390 37.037 29.98 0.00 0.00 3.10
342 343 8.449397 GCATGCCTGATTTAATTACTATCTCTG 58.551 37.037 6.36 0.00 0.00 3.35
343 344 7.969536 TGCCTGATTTAATTACTATCTCTGC 57.030 36.000 7.79 7.78 0.00 4.26
344 345 7.739825 TGCCTGATTTAATTACTATCTCTGCT 58.260 34.615 7.79 0.00 0.00 4.24
345 346 8.870116 TGCCTGATTTAATTACTATCTCTGCTA 58.130 33.333 7.79 0.00 0.00 3.49
346 347 9.712305 GCCTGATTTAATTACTATCTCTGCTAA 57.288 33.333 7.79 0.00 0.00 3.09
359 360 9.815306 ACTATCTCTGCTAAAATGGACTATAGA 57.185 33.333 6.78 0.00 0.00 1.98
363 364 9.770097 TCTCTGCTAAAATGGACTATAGAATTG 57.230 33.333 6.78 0.00 0.00 2.32
364 365 8.908786 TCTGCTAAAATGGACTATAGAATTGG 57.091 34.615 6.78 0.00 0.00 3.16
365 366 8.713971 TCTGCTAAAATGGACTATAGAATTGGA 58.286 33.333 6.78 0.00 0.00 3.53
366 367 9.342308 CTGCTAAAATGGACTATAGAATTGGAA 57.658 33.333 6.78 0.00 0.00 3.53
367 368 9.693739 TGCTAAAATGGACTATAGAATTGGAAA 57.306 29.630 6.78 0.00 0.00 3.13
368 369 9.952188 GCTAAAATGGACTATAGAATTGGAAAC 57.048 33.333 6.78 0.00 0.00 2.78
372 373 7.573968 ATGGACTATAGAATTGGAAACTTGC 57.426 36.000 6.78 0.00 0.00 4.01
373 374 6.480763 TGGACTATAGAATTGGAAACTTGCA 58.519 36.000 6.78 0.00 0.00 4.08
374 375 6.945435 TGGACTATAGAATTGGAAACTTGCAA 59.055 34.615 6.78 0.00 42.66 4.08
376 377 8.131731 GGACTATAGAATTGGAAACTTGCAATC 58.868 37.037 6.78 0.00 46.46 2.67
377 378 8.579850 ACTATAGAATTGGAAACTTGCAATCA 57.420 30.769 6.78 0.42 46.46 2.57
378 379 9.023962 ACTATAGAATTGGAAACTTGCAATCAA 57.976 29.630 6.78 0.94 46.46 2.57
379 380 9.859427 CTATAGAATTGGAAACTTGCAATCAAA 57.141 29.630 9.28 0.00 46.46 2.69
380 381 6.849588 AGAATTGGAAACTTGCAATCAAAC 57.150 33.333 9.28 3.50 46.46 2.93
381 382 6.585416 AGAATTGGAAACTTGCAATCAAACT 58.415 32.000 9.28 5.26 46.46 2.66
382 383 7.725251 AGAATTGGAAACTTGCAATCAAACTA 58.275 30.769 9.28 0.00 46.46 2.24
383 384 8.370182 AGAATTGGAAACTTGCAATCAAACTAT 58.630 29.630 9.28 0.00 46.46 2.12
384 385 8.907222 AATTGGAAACTTGCAATCAAACTATT 57.093 26.923 9.28 0.00 46.46 1.73
385 386 7.712264 TTGGAAACTTGCAATCAAACTATTG 57.288 32.000 0.00 0.00 39.41 1.90
386 387 6.815089 TGGAAACTTGCAATCAAACTATTGT 58.185 32.000 0.00 0.00 38.78 2.71
387 388 7.946207 TGGAAACTTGCAATCAAACTATTGTA 58.054 30.769 0.00 0.00 38.78 2.41
388 389 8.417106 TGGAAACTTGCAATCAAACTATTGTAA 58.583 29.630 0.00 0.00 38.56 2.41
389 390 9.423061 GGAAACTTGCAATCAAACTATTGTAAT 57.577 29.630 0.00 0.00 39.61 1.89
418 419 9.865321 ACATAACTAACTAGTAAAATTCTCGCA 57.135 29.630 0.00 0.00 34.99 5.10
537 538 9.466497 ACTATGCATTCCTACCAATAATAATGG 57.534 33.333 3.54 0.00 43.84 3.16
557 558 7.915293 AATGGTCGAATTTGTGTATTACTGA 57.085 32.000 0.00 0.00 0.00 3.41
558 559 7.915293 ATGGTCGAATTTGTGTATTACTGAA 57.085 32.000 0.00 0.00 0.00 3.02
559 560 7.915293 TGGTCGAATTTGTGTATTACTGAAT 57.085 32.000 0.00 0.00 0.00 2.57
560 561 7.970384 TGGTCGAATTTGTGTATTACTGAATC 58.030 34.615 0.00 0.00 0.00 2.52
561 562 7.065324 TGGTCGAATTTGTGTATTACTGAATCC 59.935 37.037 0.00 0.00 0.00 3.01
562 563 7.117454 GTCGAATTTGTGTATTACTGAATCCG 58.883 38.462 0.00 0.00 0.00 4.18
563 564 5.901884 CGAATTTGTGTATTACTGAATCCGC 59.098 40.000 0.00 0.00 0.00 5.54
564 565 6.456315 CGAATTTGTGTATTACTGAATCCGCA 60.456 38.462 0.00 0.00 0.00 5.69
565 566 6.751514 ATTTGTGTATTACTGAATCCGCAA 57.248 33.333 0.00 0.00 31.73 4.85
566 567 6.561737 TTTGTGTATTACTGAATCCGCAAA 57.438 33.333 0.00 0.00 38.37 3.68
567 568 6.751514 TTGTGTATTACTGAATCCGCAAAT 57.248 33.333 0.00 0.00 30.96 2.32
568 569 6.751514 TGTGTATTACTGAATCCGCAAATT 57.248 33.333 0.00 0.00 0.00 1.82
569 570 7.151999 TGTGTATTACTGAATCCGCAAATTT 57.848 32.000 0.00 0.00 0.00 1.82
570 571 7.598278 TGTGTATTACTGAATCCGCAAATTTT 58.402 30.769 0.00 0.00 0.00 1.82
571 572 8.731605 TGTGTATTACTGAATCCGCAAATTTTA 58.268 29.630 0.00 0.00 0.00 1.52
572 573 9.221775 GTGTATTACTGAATCCGCAAATTTTAG 57.778 33.333 0.00 0.00 0.00 1.85
573 574 9.168451 TGTATTACTGAATCCGCAAATTTTAGA 57.832 29.630 0.00 0.00 0.00 2.10
574 575 9.997482 GTATTACTGAATCCGCAAATTTTAGAA 57.003 29.630 0.00 0.00 0.00 2.10
575 576 8.911247 ATTACTGAATCCGCAAATTTTAGAAC 57.089 30.769 0.00 0.00 0.00 3.01
576 577 6.575162 ACTGAATCCGCAAATTTTAGAACT 57.425 33.333 0.00 0.00 0.00 3.01
577 578 6.612306 ACTGAATCCGCAAATTTTAGAACTC 58.388 36.000 0.00 0.00 0.00 3.01
578 579 6.206634 ACTGAATCCGCAAATTTTAGAACTCA 59.793 34.615 0.00 0.00 0.00 3.41
579 580 7.094205 ACTGAATCCGCAAATTTTAGAACTCAT 60.094 33.333 0.00 0.00 0.00 2.90
580 581 7.250569 TGAATCCGCAAATTTTAGAACTCATC 58.749 34.615 0.00 0.00 0.00 2.92
581 582 7.121168 TGAATCCGCAAATTTTAGAACTCATCT 59.879 33.333 0.00 0.00 42.48 2.90
582 583 8.506168 AATCCGCAAATTTTAGAACTCATCTA 57.494 30.769 0.00 0.00 39.71 1.98
583 584 8.682936 ATCCGCAAATTTTAGAACTCATCTAT 57.317 30.769 0.00 0.00 40.32 1.98
584 585 8.506168 TCCGCAAATTTTAGAACTCATCTATT 57.494 30.769 0.00 0.00 40.32 1.73
585 586 8.397906 TCCGCAAATTTTAGAACTCATCTATTG 58.602 33.333 0.00 0.00 40.32 1.90
586 587 8.184192 CCGCAAATTTTAGAACTCATCTATTGT 58.816 33.333 0.00 0.00 40.32 2.71
587 588 9.003112 CGCAAATTTTAGAACTCATCTATTGTG 57.997 33.333 0.00 0.00 40.32 3.33
600 601 8.489990 CTCATCTATTGTGAGTCAAAATGAGT 57.510 34.615 17.41 1.78 41.00 3.41
601 602 8.853077 TCATCTATTGTGAGTCAAAATGAGTT 57.147 30.769 17.41 5.07 39.62 3.01
602 603 9.288576 TCATCTATTGTGAGTCAAAATGAGTTT 57.711 29.630 17.41 0.00 39.62 2.66
603 604 9.903682 CATCTATTGTGAGTCAAAATGAGTTTT 57.096 29.630 17.41 0.00 39.62 2.43
610 611 9.554395 TGTGAGTCAAAATGAGTTTTATAGTCA 57.446 29.630 0.00 0.00 40.41 3.41
611 612 9.813080 GTGAGTCAAAATGAGTTTTATAGTCAC 57.187 33.333 0.00 13.99 40.66 3.67
612 613 9.778741 TGAGTCAAAATGAGTTTTATAGTCACT 57.221 29.630 0.00 0.00 38.98 3.41
630 631 9.892130 ATAGTCACTTTTAAACTGATTAGGAGG 57.108 33.333 0.00 0.00 0.00 4.30
631 632 7.746703 AGTCACTTTTAAACTGATTAGGAGGT 58.253 34.615 0.00 0.00 0.00 3.85
632 633 8.877195 AGTCACTTTTAAACTGATTAGGAGGTA 58.123 33.333 0.00 0.00 0.00 3.08
633 634 9.668497 GTCACTTTTAAACTGATTAGGAGGTAT 57.332 33.333 0.00 0.00 0.00 2.73
650 651 3.028850 GGTATAACCTTCCTTTTGGGCC 58.971 50.000 0.00 0.00 36.23 5.80
651 652 3.564790 GGTATAACCTTCCTTTTGGGCCA 60.565 47.826 0.00 0.00 36.23 5.36
652 653 3.490060 ATAACCTTCCTTTTGGGCCAT 57.510 42.857 7.26 0.00 40.87 4.40
653 654 2.116869 AACCTTCCTTTTGGGCCATT 57.883 45.000 7.26 0.00 40.87 3.16
654 655 2.116869 ACCTTCCTTTTGGGCCATTT 57.883 45.000 7.26 0.00 40.87 2.32
655 656 1.977854 ACCTTCCTTTTGGGCCATTTC 59.022 47.619 7.26 0.00 40.87 2.17
656 657 1.278985 CCTTCCTTTTGGGCCATTTCC 59.721 52.381 7.26 0.00 40.87 3.13
657 658 2.259917 CTTCCTTTTGGGCCATTTCCT 58.740 47.619 7.26 0.00 40.87 3.36
658 659 1.937191 TCCTTTTGGGCCATTTCCTC 58.063 50.000 7.26 0.00 40.87 3.71
659 660 1.432807 TCCTTTTGGGCCATTTCCTCT 59.567 47.619 7.26 0.00 40.87 3.69
660 661 1.551883 CCTTTTGGGCCATTTCCTCTG 59.448 52.381 7.26 0.00 35.46 3.35
661 662 2.528564 CTTTTGGGCCATTTCCTCTGA 58.471 47.619 7.26 0.00 0.00 3.27
662 663 2.692709 TTTGGGCCATTTCCTCTGAA 57.307 45.000 7.26 0.00 0.00 3.02
663 664 1.923356 TTGGGCCATTTCCTCTGAAC 58.077 50.000 7.26 0.00 0.00 3.18
664 665 0.776810 TGGGCCATTTCCTCTGAACA 59.223 50.000 0.00 0.00 0.00 3.18
665 666 1.272092 TGGGCCATTTCCTCTGAACAG 60.272 52.381 0.00 0.00 0.00 3.16
666 667 1.004745 GGGCCATTTCCTCTGAACAGA 59.995 52.381 4.39 4.45 35.85 3.41
678 679 3.870274 TCTGAACAGAGAATGCTGGATG 58.130 45.455 0.00 0.00 40.20 3.51
679 680 3.262660 TCTGAACAGAGAATGCTGGATGT 59.737 43.478 0.00 0.00 40.20 3.06
680 681 4.008330 CTGAACAGAGAATGCTGGATGTT 58.992 43.478 0.00 0.00 40.20 2.71
681 682 4.401022 TGAACAGAGAATGCTGGATGTTT 58.599 39.130 0.00 0.00 40.20 2.83
682 683 4.456911 TGAACAGAGAATGCTGGATGTTTC 59.543 41.667 0.00 0.00 40.20 2.78
683 684 3.005554 ACAGAGAATGCTGGATGTTTCG 58.994 45.455 0.00 0.00 40.20 3.46
684 685 3.264947 CAGAGAATGCTGGATGTTTCGA 58.735 45.455 0.00 0.00 32.26 3.71
685 686 3.063180 CAGAGAATGCTGGATGTTTCGAC 59.937 47.826 0.00 0.00 32.26 4.20
686 687 2.002586 AGAATGCTGGATGTTTCGACG 58.997 47.619 0.00 0.00 0.00 5.12
687 688 1.999735 GAATGCTGGATGTTTCGACGA 59.000 47.619 0.00 0.00 0.00 4.20
688 689 1.359848 ATGCTGGATGTTTCGACGAC 58.640 50.000 0.00 0.00 0.00 4.34
689 690 0.669318 TGCTGGATGTTTCGACGACC 60.669 55.000 0.00 0.00 0.00 4.79
690 691 0.669318 GCTGGATGTTTCGACGACCA 60.669 55.000 0.00 0.00 0.00 4.02
691 692 1.790755 CTGGATGTTTCGACGACCAA 58.209 50.000 0.00 0.00 0.00 3.67
692 693 1.726791 CTGGATGTTTCGACGACCAAG 59.273 52.381 0.00 0.00 0.00 3.61
693 694 0.442699 GGATGTTTCGACGACCAAGC 59.557 55.000 0.00 0.00 0.00 4.01
694 695 0.093026 GATGTTTCGACGACCAAGCG 59.907 55.000 0.00 0.00 37.29 4.68
695 696 0.319211 ATGTTTCGACGACCAAGCGA 60.319 50.000 0.00 0.00 34.83 4.93
696 697 0.937699 TGTTTCGACGACCAAGCGAG 60.938 55.000 0.00 0.00 35.31 5.03
697 698 0.662374 GTTTCGACGACCAAGCGAGA 60.662 55.000 0.00 0.00 35.31 4.04
698 699 0.386858 TTTCGACGACCAAGCGAGAG 60.387 55.000 0.00 0.00 35.31 3.20
818 819 2.642700 CCGTTCAAAACAGGCCGG 59.357 61.111 0.00 0.00 0.00 6.13
892 893 2.548057 CACACACCACACTAATCACCAC 59.452 50.000 0.00 0.00 0.00 4.16
898 899 2.426522 CACACTAATCACCACCACCAG 58.573 52.381 0.00 0.00 0.00 4.00
900 901 0.036388 ACTAATCACCACCACCAGCG 60.036 55.000 0.00 0.00 0.00 5.18
985 993 1.803519 CTCTCACCGAGCAAGCGAC 60.804 63.158 0.00 0.00 31.99 5.19
1127 1142 2.167861 GCGATTGCTCTGGACCGAC 61.168 63.158 0.00 0.00 38.39 4.79
1833 1889 3.179443 GTCTTGATGACGCCCTAATCA 57.821 47.619 0.00 0.00 35.81 2.57
1834 1890 3.733337 GTCTTGATGACGCCCTAATCAT 58.267 45.455 0.00 0.00 38.28 2.45
1835 1891 4.883083 GTCTTGATGACGCCCTAATCATA 58.117 43.478 0.00 0.00 35.67 2.15
1836 1892 5.297547 GTCTTGATGACGCCCTAATCATAA 58.702 41.667 0.00 0.00 35.67 1.90
1837 1893 5.934625 GTCTTGATGACGCCCTAATCATAAT 59.065 40.000 0.00 0.00 35.67 1.28
1838 1894 6.428159 GTCTTGATGACGCCCTAATCATAATT 59.572 38.462 0.00 0.00 35.67 1.40
1865 1921 4.564769 GTCCTCTGTTTCGATCTTCATGTC 59.435 45.833 0.00 0.00 0.00 3.06
1866 1922 3.549471 CCTCTGTTTCGATCTTCATGTCG 59.451 47.826 0.00 0.00 39.11 4.35
1871 1927 1.393603 TCGATCTTCATGTCGAGCCT 58.606 50.000 2.32 0.00 41.44 4.58
1878 1934 2.542020 TCATGTCGAGCCTTGTTGAA 57.458 45.000 0.00 0.00 0.00 2.69
1887 1943 3.421888 CGAGCCTTGTTGAAACATTTTCG 59.578 43.478 0.00 2.07 38.95 3.46
1952 2008 6.749923 ATCAGTTTTCACTCTGGCTAAATC 57.250 37.500 0.00 0.00 33.13 2.17
1957 2013 8.514594 CAGTTTTCACTCTGGCTAAATCATTTA 58.485 33.333 0.00 0.00 0.00 1.40
1962 2018 3.211045 TCTGGCTAAATCATTTACCCGC 58.789 45.455 0.00 0.00 0.00 6.13
1984 2040 3.487372 GTCACTTCCAAGGTAAAAGCCT 58.513 45.455 0.00 0.00 41.41 4.58
1986 2042 5.067954 GTCACTTCCAAGGTAAAAGCCTAA 58.932 41.667 0.00 0.00 38.03 2.69
1989 2045 6.043474 TCACTTCCAAGGTAAAAGCCTAACTA 59.957 38.462 0.00 0.00 38.03 2.24
1991 2047 8.044908 CACTTCCAAGGTAAAAGCCTAACTATA 58.955 37.037 0.00 0.00 38.03 1.31
2018 2074 5.768333 GCTTTTGCACATGGTTAATCTTC 57.232 39.130 0.00 0.00 46.58 2.87
2019 2075 5.229423 GCTTTTGCACATGGTTAATCTTCA 58.771 37.500 0.00 0.00 46.58 3.02
2020 2076 5.346822 GCTTTTGCACATGGTTAATCTTCAG 59.653 40.000 0.00 0.00 46.58 3.02
2021 2077 5.389859 TTTGCACATGGTTAATCTTCAGG 57.610 39.130 0.00 0.00 0.00 3.86
2022 2078 4.299586 TGCACATGGTTAATCTTCAGGA 57.700 40.909 0.00 0.00 0.00 3.86
2023 2079 4.858850 TGCACATGGTTAATCTTCAGGAT 58.141 39.130 0.00 0.00 35.97 3.24
2024 2080 6.000246 TGCACATGGTTAATCTTCAGGATA 58.000 37.500 0.00 0.00 33.71 2.59
2025 2081 6.422333 TGCACATGGTTAATCTTCAGGATAA 58.578 36.000 0.00 0.00 33.71 1.75
2026 2082 6.889177 TGCACATGGTTAATCTTCAGGATAAA 59.111 34.615 0.00 0.00 33.71 1.40
2027 2083 7.560991 TGCACATGGTTAATCTTCAGGATAAAT 59.439 33.333 0.00 0.00 33.71 1.40
2028 2084 8.416329 GCACATGGTTAATCTTCAGGATAAATT 58.584 33.333 0.00 0.00 33.71 1.82
2065 2121 4.353737 CACAAACAACTCATCAACCACAG 58.646 43.478 0.00 0.00 0.00 3.66
2068 2124 3.558931 ACAACTCATCAACCACAGACA 57.441 42.857 0.00 0.00 0.00 3.41
2072 2128 4.422073 ACTCATCAACCACAGACAAAGA 57.578 40.909 0.00 0.00 0.00 2.52
2081 2137 2.227388 CCACAGACAAAGATCACCTTGC 59.773 50.000 0.00 0.00 34.79 4.01
2093 2168 4.467795 AGATCACCTTGCTCAGCTAAGTAA 59.532 41.667 0.00 0.00 0.00 2.24
2105 2180 6.202954 GCTCAGCTAAGTAAGTGTTTTCTTCA 59.797 38.462 0.00 0.00 0.00 3.02
2127 2202 5.071788 TCAGGCGAATCTCCCATTTAAGTAT 59.928 40.000 0.00 0.00 0.00 2.12
2129 2204 5.071788 AGGCGAATCTCCCATTTAAGTATGA 59.928 40.000 0.00 0.00 0.00 2.15
2130 2205 5.409826 GGCGAATCTCCCATTTAAGTATGAG 59.590 44.000 0.00 0.00 0.00 2.90
2158 2234 7.439356 TGGACATACATTTTTCATTCGCAAAAA 59.561 29.630 0.00 0.00 37.18 1.94
2210 2286 3.567478 ATGCTTCATGTACTTCCTCCC 57.433 47.619 0.00 0.00 0.00 4.30
2213 2289 2.482142 GCTTCATGTACTTCCTCCCTCG 60.482 54.545 0.00 0.00 0.00 4.63
2214 2290 1.776662 TCATGTACTTCCTCCCTCGG 58.223 55.000 0.00 0.00 0.00 4.63
2222 2298 2.236395 ACTTCCTCCCTCGGTGTTTATG 59.764 50.000 0.00 0.00 0.00 1.90
2252 2328 5.393027 CCCTCATATTTTGGGTCAAACTTCG 60.393 44.000 0.00 0.00 36.32 3.79
2380 2500 4.335416 TGGAAGAGCCAAAATACAAGGAG 58.665 43.478 0.00 0.00 45.87 3.69
2381 2501 3.696548 GGAAGAGCCAAAATACAAGGAGG 59.303 47.826 0.00 0.00 36.34 4.30
2382 2502 4.336280 GAAGAGCCAAAATACAAGGAGGT 58.664 43.478 0.00 0.00 0.00 3.85
2398 2518 1.214673 GAGGTCCAATAAACCCTCCCC 59.785 57.143 0.00 0.00 38.01 4.81
2399 2519 0.106868 GGTCCAATAAACCCTCCCCG 60.107 60.000 0.00 0.00 0.00 5.73
2416 2536 3.576982 TCCCCGATGGAGTATTGTGTATC 59.423 47.826 0.00 0.00 38.61 2.24
2419 2539 3.981416 CCGATGGAGTATTGTGTATCACG 59.019 47.826 0.00 0.00 37.14 4.35
2440 2565 7.391620 TCACGAGAAGGGTTAAACAAGATTAT 58.608 34.615 0.00 0.00 0.00 1.28
2483 2608 2.393646 CTCTCCCAACCCTAAGAGAGG 58.606 57.143 7.80 0.00 45.61 3.69
2508 2633 3.005539 AGGGTGCGCATCTCCACT 61.006 61.111 21.95 7.78 32.68 4.00
2511 2636 1.521681 GGTGCGCATCTCCACTACC 60.522 63.158 15.91 1.98 32.68 3.18
2518 2643 2.428890 CGCATCTCCACTACCTCTTCTT 59.571 50.000 0.00 0.00 0.00 2.52
2520 2645 4.438148 GCATCTCCACTACCTCTTCTTTC 58.562 47.826 0.00 0.00 0.00 2.62
2547 2672 1.139853 GGTCATCACCCTGTCATCCTC 59.860 57.143 0.00 0.00 36.54 3.71
2548 2673 1.139853 GTCATCACCCTGTCATCCTCC 59.860 57.143 0.00 0.00 0.00 4.30
2549 2674 1.206878 CATCACCCTGTCATCCTCCA 58.793 55.000 0.00 0.00 0.00 3.86
2550 2675 1.561076 CATCACCCTGTCATCCTCCAA 59.439 52.381 0.00 0.00 0.00 3.53
2551 2676 0.984230 TCACCCTGTCATCCTCCAAC 59.016 55.000 0.00 0.00 0.00 3.77
2552 2677 0.035056 CACCCTGTCATCCTCCAACC 60.035 60.000 0.00 0.00 0.00 3.77
2553 2678 0.178861 ACCCTGTCATCCTCCAACCT 60.179 55.000 0.00 0.00 0.00 3.50
2554 2679 0.543749 CCCTGTCATCCTCCAACCTC 59.456 60.000 0.00 0.00 0.00 3.85
2555 2680 0.543749 CCTGTCATCCTCCAACCTCC 59.456 60.000 0.00 0.00 0.00 4.30
2556 2681 0.176680 CTGTCATCCTCCAACCTCCG 59.823 60.000 0.00 0.00 0.00 4.63
2557 2682 0.252057 TGTCATCCTCCAACCTCCGA 60.252 55.000 0.00 0.00 0.00 4.55
2582 2707 1.603842 TGCCTATGTGGGAGTGCAG 59.396 57.895 0.00 0.00 36.00 4.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 8.311109 ACTAGTTTGTTTGTCCATTTTGTCTTT 58.689 29.630 0.00 0.00 0.00 2.52
2 3 7.836842 ACTAGTTTGTTTGTCCATTTTGTCTT 58.163 30.769 0.00 0.00 0.00 3.01
3 4 7.404671 ACTAGTTTGTTTGTCCATTTTGTCT 57.595 32.000 0.00 0.00 0.00 3.41
4 5 9.575783 TTAACTAGTTTGTTTGTCCATTTTGTC 57.424 29.630 14.49 0.00 0.00 3.18
5 6 9.930693 TTTAACTAGTTTGTTTGTCCATTTTGT 57.069 25.926 14.49 0.00 0.00 2.83
12 13 9.726232 CCTACTTTTTAACTAGTTTGTTTGTCC 57.274 33.333 14.49 0.00 0.00 4.02
18 19 9.428097 CGGTATCCTACTTTTTAACTAGTTTGT 57.572 33.333 14.49 8.01 0.00 2.83
19 20 9.428097 ACGGTATCCTACTTTTTAACTAGTTTG 57.572 33.333 14.49 2.54 0.00 2.93
20 21 9.428097 CACGGTATCCTACTTTTTAACTAGTTT 57.572 33.333 14.49 0.00 0.00 2.66
21 22 8.806146 TCACGGTATCCTACTTTTTAACTAGTT 58.194 33.333 13.68 13.68 0.00 2.24
22 23 8.353423 TCACGGTATCCTACTTTTTAACTAGT 57.647 34.615 0.00 0.00 0.00 2.57
23 24 7.434602 GCTCACGGTATCCTACTTTTTAACTAG 59.565 40.741 0.00 0.00 0.00 2.57
24 25 7.093814 TGCTCACGGTATCCTACTTTTTAACTA 60.094 37.037 0.00 0.00 0.00 2.24
25 26 6.104665 GCTCACGGTATCCTACTTTTTAACT 58.895 40.000 0.00 0.00 0.00 2.24
26 27 5.870978 TGCTCACGGTATCCTACTTTTTAAC 59.129 40.000 0.00 0.00 0.00 2.01
27 28 6.040209 TGCTCACGGTATCCTACTTTTTAA 57.960 37.500 0.00 0.00 0.00 1.52
28 29 5.664294 TGCTCACGGTATCCTACTTTTTA 57.336 39.130 0.00 0.00 0.00 1.52
29 30 4.546829 TGCTCACGGTATCCTACTTTTT 57.453 40.909 0.00 0.00 0.00 1.94
30 31 4.755266 ATGCTCACGGTATCCTACTTTT 57.245 40.909 0.00 0.00 0.00 2.27
31 32 4.755266 AATGCTCACGGTATCCTACTTT 57.245 40.909 0.00 0.00 0.00 2.66
32 33 4.406003 AGAAATGCTCACGGTATCCTACTT 59.594 41.667 0.00 0.00 0.00 2.24
33 34 3.961408 AGAAATGCTCACGGTATCCTACT 59.039 43.478 0.00 0.00 0.00 2.57
34 35 4.323553 AGAAATGCTCACGGTATCCTAC 57.676 45.455 0.00 0.00 0.00 3.18
35 36 4.202223 GGAAGAAATGCTCACGGTATCCTA 60.202 45.833 0.00 0.00 0.00 2.94
36 37 3.432326 GGAAGAAATGCTCACGGTATCCT 60.432 47.826 0.00 0.00 0.00 3.24
37 38 2.872858 GGAAGAAATGCTCACGGTATCC 59.127 50.000 0.00 0.00 0.00 2.59
38 39 3.531538 TGGAAGAAATGCTCACGGTATC 58.468 45.455 0.00 0.00 0.00 2.24
39 40 3.627395 TGGAAGAAATGCTCACGGTAT 57.373 42.857 0.00 0.00 0.00 2.73
40 41 3.055458 TGATGGAAGAAATGCTCACGGTA 60.055 43.478 0.00 0.00 0.00 4.02
41 42 2.290260 TGATGGAAGAAATGCTCACGGT 60.290 45.455 0.00 0.00 0.00 4.83
42 43 2.358957 TGATGGAAGAAATGCTCACGG 58.641 47.619 0.00 0.00 0.00 4.94
43 44 4.212847 CCTATGATGGAAGAAATGCTCACG 59.787 45.833 0.00 0.00 0.00 4.35
44 45 4.023365 GCCTATGATGGAAGAAATGCTCAC 60.023 45.833 0.00 0.00 0.00 3.51
45 46 4.139786 GCCTATGATGGAAGAAATGCTCA 58.860 43.478 0.00 0.00 0.00 4.26
46 47 4.396522 AGCCTATGATGGAAGAAATGCTC 58.603 43.478 0.00 0.00 0.00 4.26
47 48 4.141321 TGAGCCTATGATGGAAGAAATGCT 60.141 41.667 0.00 0.00 0.00 3.79
48 49 4.139786 TGAGCCTATGATGGAAGAAATGC 58.860 43.478 0.00 0.00 0.00 3.56
49 50 6.896021 ATTGAGCCTATGATGGAAGAAATG 57.104 37.500 0.00 0.00 0.00 2.32
50 51 7.909485 AAATTGAGCCTATGATGGAAGAAAT 57.091 32.000 0.00 0.00 0.00 2.17
52 53 9.730705 CTATAAATTGAGCCTATGATGGAAGAA 57.269 33.333 0.00 0.00 0.00 2.52
53 54 7.826252 GCTATAAATTGAGCCTATGATGGAAGA 59.174 37.037 0.00 0.00 32.25 2.87
54 55 7.828223 AGCTATAAATTGAGCCTATGATGGAAG 59.172 37.037 4.16 0.00 39.65 3.46
55 56 7.693132 AGCTATAAATTGAGCCTATGATGGAA 58.307 34.615 4.16 0.00 39.65 3.53
56 57 7.262990 AGCTATAAATTGAGCCTATGATGGA 57.737 36.000 4.16 0.00 39.65 3.41
57 58 9.624373 ATTAGCTATAAATTGAGCCTATGATGG 57.376 33.333 0.00 0.00 39.65 3.51
60 61 9.658799 GACATTAGCTATAAATTGAGCCTATGA 57.341 33.333 17.20 0.00 39.65 2.15
61 62 8.887717 GGACATTAGCTATAAATTGAGCCTATG 58.112 37.037 0.00 12.69 39.65 2.23
62 63 8.830741 AGGACATTAGCTATAAATTGAGCCTAT 58.169 33.333 0.00 0.00 39.65 2.57
63 64 8.207350 AGGACATTAGCTATAAATTGAGCCTA 57.793 34.615 0.00 0.00 39.65 3.93
64 65 7.084268 AGGACATTAGCTATAAATTGAGCCT 57.916 36.000 0.00 0.00 39.65 4.58
65 66 7.751768 AAGGACATTAGCTATAAATTGAGCC 57.248 36.000 0.00 0.00 39.65 4.70
136 137 8.770828 GCAGTTGGCTATATTTTAGATAACGAA 58.229 33.333 0.00 0.00 40.25 3.85
137 138 7.929245 TGCAGTTGGCTATATTTTAGATAACGA 59.071 33.333 0.00 0.00 45.15 3.85
138 139 8.009974 GTGCAGTTGGCTATATTTTAGATAACG 58.990 37.037 0.00 0.00 45.15 3.18
139 140 8.836413 TGTGCAGTTGGCTATATTTTAGATAAC 58.164 33.333 0.00 0.00 45.15 1.89
140 141 8.972458 TGTGCAGTTGGCTATATTTTAGATAA 57.028 30.769 0.00 0.00 45.15 1.75
141 142 8.972458 TTGTGCAGTTGGCTATATTTTAGATA 57.028 30.769 0.00 0.00 45.15 1.98
142 143 7.880160 TTGTGCAGTTGGCTATATTTTAGAT 57.120 32.000 0.00 0.00 45.15 1.98
143 144 7.880160 ATTGTGCAGTTGGCTATATTTTAGA 57.120 32.000 0.00 0.00 45.15 2.10
146 147 8.917088 AGATAATTGTGCAGTTGGCTATATTTT 58.083 29.630 0.00 0.00 45.15 1.82
147 148 8.469309 AGATAATTGTGCAGTTGGCTATATTT 57.531 30.769 0.00 0.00 45.15 1.40
148 149 7.720957 TGAGATAATTGTGCAGTTGGCTATATT 59.279 33.333 0.00 0.00 45.15 1.28
149 150 7.226441 TGAGATAATTGTGCAGTTGGCTATAT 58.774 34.615 0.00 0.00 45.15 0.86
150 151 6.591001 TGAGATAATTGTGCAGTTGGCTATA 58.409 36.000 0.00 0.00 45.15 1.31
151 152 5.439721 TGAGATAATTGTGCAGTTGGCTAT 58.560 37.500 0.00 0.00 45.15 2.97
152 153 4.842574 TGAGATAATTGTGCAGTTGGCTA 58.157 39.130 0.00 0.00 45.15 3.93
153 154 3.689347 TGAGATAATTGTGCAGTTGGCT 58.311 40.909 0.00 0.00 45.15 4.75
154 155 4.439305 TTGAGATAATTGTGCAGTTGGC 57.561 40.909 0.00 0.00 45.13 4.52
155 156 4.860907 GCTTTGAGATAATTGTGCAGTTGG 59.139 41.667 0.00 0.00 0.00 3.77
156 157 5.463286 TGCTTTGAGATAATTGTGCAGTTG 58.537 37.500 0.00 0.00 0.00 3.16
157 158 5.474532 TCTGCTTTGAGATAATTGTGCAGTT 59.525 36.000 10.68 0.00 44.57 3.16
158 159 5.005740 TCTGCTTTGAGATAATTGTGCAGT 58.994 37.500 10.68 0.00 44.57 4.40
159 160 5.106436 TGTCTGCTTTGAGATAATTGTGCAG 60.106 40.000 0.00 0.00 45.31 4.41
160 161 4.761227 TGTCTGCTTTGAGATAATTGTGCA 59.239 37.500 0.00 0.00 0.00 4.57
161 162 5.091431 GTGTCTGCTTTGAGATAATTGTGC 58.909 41.667 0.00 0.00 0.00 4.57
162 163 6.245115 TGTGTCTGCTTTGAGATAATTGTG 57.755 37.500 0.00 0.00 0.00 3.33
163 164 6.882610 TTGTGTCTGCTTTGAGATAATTGT 57.117 33.333 0.00 0.00 0.00 2.71
164 165 8.752766 AATTTGTGTCTGCTTTGAGATAATTG 57.247 30.769 0.00 0.00 0.00 2.32
167 168 9.844790 CAATAATTTGTGTCTGCTTTGAGATAA 57.155 29.630 0.00 0.00 0.00 1.75
168 169 8.461222 CCAATAATTTGTGTCTGCTTTGAGATA 58.539 33.333 0.00 0.00 0.00 1.98
169 170 7.039504 ACCAATAATTTGTGTCTGCTTTGAGAT 60.040 33.333 0.00 0.00 0.00 2.75
170 171 6.265196 ACCAATAATTTGTGTCTGCTTTGAGA 59.735 34.615 0.00 0.00 0.00 3.27
171 172 6.449698 ACCAATAATTTGTGTCTGCTTTGAG 58.550 36.000 0.00 0.00 0.00 3.02
172 173 6.403866 ACCAATAATTTGTGTCTGCTTTGA 57.596 33.333 0.00 0.00 0.00 2.69
173 174 6.308766 GCTACCAATAATTTGTGTCTGCTTTG 59.691 38.462 0.00 0.00 0.00 2.77
174 175 6.015519 TGCTACCAATAATTTGTGTCTGCTTT 60.016 34.615 0.00 0.00 0.00 3.51
175 176 5.476599 TGCTACCAATAATTTGTGTCTGCTT 59.523 36.000 0.00 0.00 0.00 3.91
176 177 5.009631 TGCTACCAATAATTTGTGTCTGCT 58.990 37.500 0.00 0.00 0.00 4.24
177 178 5.309323 TGCTACCAATAATTTGTGTCTGC 57.691 39.130 0.00 0.00 0.00 4.26
178 179 6.968904 GTGATGCTACCAATAATTTGTGTCTG 59.031 38.462 0.00 0.00 0.00 3.51
179 180 6.658816 TGTGATGCTACCAATAATTTGTGTCT 59.341 34.615 0.00 0.00 0.00 3.41
180 181 6.851609 TGTGATGCTACCAATAATTTGTGTC 58.148 36.000 0.00 0.00 0.00 3.67
181 182 6.832520 TGTGATGCTACCAATAATTTGTGT 57.167 33.333 0.00 0.00 0.00 3.72
182 183 7.166307 CGATTGTGATGCTACCAATAATTTGTG 59.834 37.037 0.00 0.00 0.00 3.33
183 184 7.066887 TCGATTGTGATGCTACCAATAATTTGT 59.933 33.333 0.00 0.00 0.00 2.83
184 185 7.416817 TCGATTGTGATGCTACCAATAATTTG 58.583 34.615 0.00 0.00 0.00 2.32
185 186 7.566760 TCGATTGTGATGCTACCAATAATTT 57.433 32.000 0.00 0.00 0.00 1.82
186 187 7.094634 GGATCGATTGTGATGCTACCAATAATT 60.095 37.037 0.00 0.00 34.26 1.40
187 188 6.372659 GGATCGATTGTGATGCTACCAATAAT 59.627 38.462 0.00 0.00 34.26 1.28
188 189 5.700832 GGATCGATTGTGATGCTACCAATAA 59.299 40.000 0.00 0.00 34.26 1.40
189 190 5.237815 GGATCGATTGTGATGCTACCAATA 58.762 41.667 0.00 0.00 34.26 1.90
190 191 4.067896 GGATCGATTGTGATGCTACCAAT 58.932 43.478 0.00 0.00 34.26 3.16
191 192 3.466836 GGATCGATTGTGATGCTACCAA 58.533 45.455 0.00 0.00 34.26 3.67
192 193 2.224281 GGGATCGATTGTGATGCTACCA 60.224 50.000 0.00 0.00 36.95 3.25
193 194 2.224281 TGGGATCGATTGTGATGCTACC 60.224 50.000 0.00 0.00 36.95 3.18
194 195 3.111853 TGGGATCGATTGTGATGCTAC 57.888 47.619 0.00 0.00 36.95 3.58
195 196 3.118445 TGTTGGGATCGATTGTGATGCTA 60.118 43.478 0.00 0.00 36.95 3.49
196 197 2.292267 GTTGGGATCGATTGTGATGCT 58.708 47.619 0.00 0.00 36.95 3.79
197 198 2.016318 TGTTGGGATCGATTGTGATGC 58.984 47.619 0.00 0.00 36.11 3.91
198 199 2.355756 GGTGTTGGGATCGATTGTGATG 59.644 50.000 0.00 0.00 0.00 3.07
199 200 2.026356 TGGTGTTGGGATCGATTGTGAT 60.026 45.455 0.00 0.00 0.00 3.06
200 201 1.349357 TGGTGTTGGGATCGATTGTGA 59.651 47.619 0.00 0.00 0.00 3.58
201 202 1.819928 TGGTGTTGGGATCGATTGTG 58.180 50.000 0.00 0.00 0.00 3.33
202 203 2.577606 TTGGTGTTGGGATCGATTGT 57.422 45.000 0.00 0.00 0.00 2.71
203 204 3.443329 TGATTTGGTGTTGGGATCGATTG 59.557 43.478 0.00 0.00 0.00 2.67
204 205 3.696045 TGATTTGGTGTTGGGATCGATT 58.304 40.909 0.00 0.00 0.00 3.34
205 206 3.364460 TGATTTGGTGTTGGGATCGAT 57.636 42.857 0.00 0.00 0.00 3.59
206 207 2.817258 GTTGATTTGGTGTTGGGATCGA 59.183 45.455 0.00 0.00 0.00 3.59
207 208 2.094752 GGTTGATTTGGTGTTGGGATCG 60.095 50.000 0.00 0.00 0.00 3.69
208 209 3.165071 AGGTTGATTTGGTGTTGGGATC 58.835 45.455 0.00 0.00 0.00 3.36
209 210 3.258722 AGGTTGATTTGGTGTTGGGAT 57.741 42.857 0.00 0.00 0.00 3.85
210 211 2.765689 AGGTTGATTTGGTGTTGGGA 57.234 45.000 0.00 0.00 0.00 4.37
211 212 3.639094 TGTAAGGTTGATTTGGTGTTGGG 59.361 43.478 0.00 0.00 0.00 4.12
212 213 4.927978 TGTAAGGTTGATTTGGTGTTGG 57.072 40.909 0.00 0.00 0.00 3.77
213 214 6.036626 GGTTTTGTAAGGTTGATTTGGTGTTG 59.963 38.462 0.00 0.00 0.00 3.33
214 215 6.070481 AGGTTTTGTAAGGTTGATTTGGTGTT 60.070 34.615 0.00 0.00 0.00 3.32
215 216 5.423931 AGGTTTTGTAAGGTTGATTTGGTGT 59.576 36.000 0.00 0.00 0.00 4.16
216 217 5.912892 AGGTTTTGTAAGGTTGATTTGGTG 58.087 37.500 0.00 0.00 0.00 4.17
217 218 7.663043 TTAGGTTTTGTAAGGTTGATTTGGT 57.337 32.000 0.00 0.00 0.00 3.67
218 219 9.554395 AATTTAGGTTTTGTAAGGTTGATTTGG 57.446 29.630 0.00 0.00 0.00 3.28
231 232 9.178758 TGCCACAAATTTAAATTTAGGTTTTGT 57.821 25.926 27.78 19.26 36.52 2.83
237 238 9.965748 CGTTTATGCCACAAATTTAAATTTAGG 57.034 29.630 25.57 25.57 36.52 2.69
240 241 8.499967 GGTCGTTTATGCCACAAATTTAAATTT 58.500 29.630 18.40 18.40 39.07 1.82
241 242 7.875554 AGGTCGTTTATGCCACAAATTTAAATT 59.124 29.630 7.64 7.64 0.00 1.82
242 243 7.382898 AGGTCGTTTATGCCACAAATTTAAAT 58.617 30.769 0.00 0.00 0.00 1.40
243 244 6.750148 AGGTCGTTTATGCCACAAATTTAAA 58.250 32.000 0.00 0.00 0.00 1.52
244 245 6.334102 AGGTCGTTTATGCCACAAATTTAA 57.666 33.333 0.00 0.00 0.00 1.52
245 246 5.968528 AGGTCGTTTATGCCACAAATTTA 57.031 34.783 0.00 0.00 0.00 1.40
246 247 4.864704 AGGTCGTTTATGCCACAAATTT 57.135 36.364 0.00 0.00 0.00 1.82
247 248 4.864704 AAGGTCGTTTATGCCACAAATT 57.135 36.364 0.00 0.00 0.00 1.82
248 249 4.279671 TGAAAGGTCGTTTATGCCACAAAT 59.720 37.500 0.00 0.00 0.00 2.32
249 250 3.632604 TGAAAGGTCGTTTATGCCACAAA 59.367 39.130 0.00 0.00 0.00 2.83
250 251 3.003897 GTGAAAGGTCGTTTATGCCACAA 59.996 43.478 0.00 0.00 0.00 3.33
251 252 2.550606 GTGAAAGGTCGTTTATGCCACA 59.449 45.455 0.00 0.00 0.00 4.17
252 253 2.550606 TGTGAAAGGTCGTTTATGCCAC 59.449 45.455 0.00 0.00 0.00 5.01
253 254 2.852449 TGTGAAAGGTCGTTTATGCCA 58.148 42.857 0.00 0.00 0.00 4.92
254 255 4.434713 AATGTGAAAGGTCGTTTATGCC 57.565 40.909 0.00 0.00 0.00 4.40
255 256 7.861176 TTAAAATGTGAAAGGTCGTTTATGC 57.139 32.000 0.00 0.00 0.00 3.14
256 257 9.239002 TGTTTAAAATGTGAAAGGTCGTTTATG 57.761 29.630 0.00 0.00 0.00 1.90
257 258 9.804758 TTGTTTAAAATGTGAAAGGTCGTTTAT 57.195 25.926 0.00 0.00 0.00 1.40
258 259 9.635520 TTTGTTTAAAATGTGAAAGGTCGTTTA 57.364 25.926 0.00 0.00 0.00 2.01
259 260 8.535690 TTTGTTTAAAATGTGAAAGGTCGTTT 57.464 26.923 0.00 0.00 0.00 3.60
260 261 8.710835 ATTTGTTTAAAATGTGAAAGGTCGTT 57.289 26.923 0.00 0.00 0.00 3.85
261 262 9.974980 ATATTTGTTTAAAATGTGAAAGGTCGT 57.025 25.926 0.00 0.00 0.00 4.34
287 288 9.474313 ACTATGTTGGGAGCAATTAATAAGAAA 57.526 29.630 0.00 0.00 0.00 2.52
289 290 9.778741 CTACTATGTTGGGAGCAATTAATAAGA 57.221 33.333 0.00 0.00 0.00 2.10
290 291 9.003658 CCTACTATGTTGGGAGCAATTAATAAG 57.996 37.037 0.00 0.00 0.00 1.73
291 292 7.447238 GCCTACTATGTTGGGAGCAATTAATAA 59.553 37.037 0.00 0.00 0.00 1.40
292 293 6.940298 GCCTACTATGTTGGGAGCAATTAATA 59.060 38.462 0.00 0.00 0.00 0.98
293 294 5.770162 GCCTACTATGTTGGGAGCAATTAAT 59.230 40.000 0.99 0.00 0.00 1.40
294 295 5.130350 GCCTACTATGTTGGGAGCAATTAA 58.870 41.667 0.99 0.00 0.00 1.40
295 296 4.165180 TGCCTACTATGTTGGGAGCAATTA 59.835 41.667 0.99 0.00 0.00 1.40
296 297 3.053693 TGCCTACTATGTTGGGAGCAATT 60.054 43.478 0.99 0.00 0.00 2.32
297 298 2.509548 TGCCTACTATGTTGGGAGCAAT 59.490 45.455 0.99 0.00 0.00 3.56
298 299 1.912731 TGCCTACTATGTTGGGAGCAA 59.087 47.619 0.99 0.00 0.00 3.91
299 300 1.578897 TGCCTACTATGTTGGGAGCA 58.421 50.000 0.99 0.00 0.00 4.26
300 301 2.498167 CATGCCTACTATGTTGGGAGC 58.502 52.381 0.99 0.00 32.48 4.70
301 302 2.498167 GCATGCCTACTATGTTGGGAG 58.502 52.381 6.36 0.00 32.48 4.30
302 303 1.142870 GGCATGCCTACTATGTTGGGA 59.857 52.381 29.98 0.00 33.46 4.37
303 304 1.143684 AGGCATGCCTACTATGTTGGG 59.856 52.381 37.99 0.00 46.14 4.12
304 305 2.158769 TCAGGCATGCCTACTATGTTGG 60.159 50.000 38.09 22.11 46.28 3.77
305 306 3.198409 TCAGGCATGCCTACTATGTTG 57.802 47.619 38.09 23.58 46.28 3.33
306 307 4.443978 AATCAGGCATGCCTACTATGTT 57.556 40.909 38.09 21.56 46.28 2.71
307 308 4.443978 AAATCAGGCATGCCTACTATGT 57.556 40.909 38.09 22.86 46.28 2.29
308 309 7.458409 AATTAAATCAGGCATGCCTACTATG 57.542 36.000 38.09 25.78 46.28 2.23
309 310 8.386264 AGTAATTAAATCAGGCATGCCTACTAT 58.614 33.333 38.09 26.69 46.28 2.12
310 311 7.745717 AGTAATTAAATCAGGCATGCCTACTA 58.254 34.615 38.09 25.72 46.28 1.82
311 312 6.605119 AGTAATTAAATCAGGCATGCCTACT 58.395 36.000 38.09 28.81 46.28 2.57
312 313 6.884280 AGTAATTAAATCAGGCATGCCTAC 57.116 37.500 38.09 27.15 46.28 3.18
313 314 8.605947 AGATAGTAATTAAATCAGGCATGCCTA 58.394 33.333 38.09 25.26 46.28 3.93
315 316 7.609532 AGAGATAGTAATTAAATCAGGCATGCC 59.390 37.037 30.12 30.12 0.00 4.40
316 317 8.449397 CAGAGATAGTAATTAAATCAGGCATGC 58.551 37.037 9.90 9.90 0.00 4.06
317 318 8.449397 GCAGAGATAGTAATTAAATCAGGCATG 58.551 37.037 10.25 0.00 0.00 4.06
318 319 8.381636 AGCAGAGATAGTAATTAAATCAGGCAT 58.618 33.333 10.25 0.00 0.00 4.40
319 320 7.739825 AGCAGAGATAGTAATTAAATCAGGCA 58.260 34.615 10.25 0.00 0.00 4.75
320 321 9.712305 TTAGCAGAGATAGTAATTAAATCAGGC 57.288 33.333 10.25 9.74 0.00 4.85
333 334 9.815306 TCTATAGTCCATTTTAGCAGAGATAGT 57.185 33.333 0.00 0.00 0.00 2.12
337 338 9.770097 CAATTCTATAGTCCATTTTAGCAGAGA 57.230 33.333 0.00 0.00 0.00 3.10
338 339 8.997323 CCAATTCTATAGTCCATTTTAGCAGAG 58.003 37.037 0.00 0.00 0.00 3.35
339 340 8.713971 TCCAATTCTATAGTCCATTTTAGCAGA 58.286 33.333 0.00 0.00 0.00 4.26
340 341 8.908786 TCCAATTCTATAGTCCATTTTAGCAG 57.091 34.615 0.00 0.00 0.00 4.24
341 342 9.693739 TTTCCAATTCTATAGTCCATTTTAGCA 57.306 29.630 0.00 0.00 0.00 3.49
342 343 9.952188 GTTTCCAATTCTATAGTCCATTTTAGC 57.048 33.333 0.00 0.00 0.00 3.09
346 347 8.470002 GCAAGTTTCCAATTCTATAGTCCATTT 58.530 33.333 0.00 0.00 0.00 2.32
347 348 7.615365 TGCAAGTTTCCAATTCTATAGTCCATT 59.385 33.333 0.00 0.00 0.00 3.16
348 349 7.118723 TGCAAGTTTCCAATTCTATAGTCCAT 58.881 34.615 0.00 0.00 0.00 3.41
349 350 6.480763 TGCAAGTTTCCAATTCTATAGTCCA 58.519 36.000 0.00 0.00 0.00 4.02
350 351 7.391148 TTGCAAGTTTCCAATTCTATAGTCC 57.609 36.000 0.00 0.00 0.00 3.85
351 352 8.677300 TGATTGCAAGTTTCCAATTCTATAGTC 58.323 33.333 4.94 0.00 32.20 2.59
352 353 8.579850 TGATTGCAAGTTTCCAATTCTATAGT 57.420 30.769 4.94 0.00 32.20 2.12
353 354 9.859427 TTTGATTGCAAGTTTCCAATTCTATAG 57.141 29.630 4.94 0.00 35.04 1.31
354 355 9.638239 GTTTGATTGCAAGTTTCCAATTCTATA 57.362 29.630 4.94 0.00 35.04 1.31
355 356 8.370182 AGTTTGATTGCAAGTTTCCAATTCTAT 58.630 29.630 4.94 0.00 35.04 1.98
356 357 7.725251 AGTTTGATTGCAAGTTTCCAATTCTA 58.275 30.769 4.94 0.00 35.04 2.10
357 358 6.585416 AGTTTGATTGCAAGTTTCCAATTCT 58.415 32.000 4.94 3.88 35.04 2.40
358 359 6.849588 AGTTTGATTGCAAGTTTCCAATTC 57.150 33.333 4.94 0.00 35.04 2.17
359 360 8.776470 CAATAGTTTGATTGCAAGTTTCCAATT 58.224 29.630 4.94 0.00 35.04 2.32
360 361 7.933033 ACAATAGTTTGATTGCAAGTTTCCAAT 59.067 29.630 4.94 0.00 39.94 3.16
361 362 7.271511 ACAATAGTTTGATTGCAAGTTTCCAA 58.728 30.769 4.94 1.42 39.94 3.53
362 363 6.815089 ACAATAGTTTGATTGCAAGTTTCCA 58.185 32.000 4.94 0.00 39.94 3.53
363 364 8.810652 TTACAATAGTTTGATTGCAAGTTTCC 57.189 30.769 4.94 0.00 39.94 3.13
392 393 9.865321 TGCGAGAATTTTACTAGTTAGTTATGT 57.135 29.630 0.00 0.00 37.73 2.29
511 512 9.466497 CCATTATTATTGGTAGGAATGCATAGT 57.534 33.333 0.00 0.00 0.00 2.12
512 513 9.466497 ACCATTATTATTGGTAGGAATGCATAG 57.534 33.333 0.00 0.00 45.62 2.23
531 532 9.607988 TCAGTAATACACAAATTCGACCATTAT 57.392 29.630 0.00 0.00 0.00 1.28
532 533 9.438228 TTCAGTAATACACAAATTCGACCATTA 57.562 29.630 0.00 0.00 0.00 1.90
533 534 7.915293 TCAGTAATACACAAATTCGACCATT 57.085 32.000 0.00 0.00 0.00 3.16
534 535 7.915293 TTCAGTAATACACAAATTCGACCAT 57.085 32.000 0.00 0.00 0.00 3.55
535 536 7.065324 GGATTCAGTAATACACAAATTCGACCA 59.935 37.037 0.00 0.00 0.00 4.02
536 537 7.407337 GGATTCAGTAATACACAAATTCGACC 58.593 38.462 0.00 0.00 0.00 4.79
537 538 7.117454 CGGATTCAGTAATACACAAATTCGAC 58.883 38.462 7.07 0.00 36.43 4.20
538 539 6.237996 GCGGATTCAGTAATACACAAATTCGA 60.238 38.462 13.54 0.00 36.43 3.71
539 540 5.901884 GCGGATTCAGTAATACACAAATTCG 59.098 40.000 8.03 8.03 36.96 3.34
540 541 6.781138 TGCGGATTCAGTAATACACAAATTC 58.219 36.000 0.00 0.00 0.00 2.17
541 542 6.751514 TGCGGATTCAGTAATACACAAATT 57.248 33.333 0.00 0.00 0.00 1.82
542 543 6.751514 TTGCGGATTCAGTAATACACAAAT 57.248 33.333 0.00 0.00 27.43 2.32
543 544 6.561737 TTTGCGGATTCAGTAATACACAAA 57.438 33.333 0.00 0.00 36.20 2.83
544 545 6.751514 ATTTGCGGATTCAGTAATACACAA 57.248 33.333 0.00 0.00 28.25 3.33
545 546 6.751514 AATTTGCGGATTCAGTAATACACA 57.248 33.333 0.00 0.00 0.00 3.72
546 547 9.221775 CTAAAATTTGCGGATTCAGTAATACAC 57.778 33.333 0.00 0.00 0.00 2.90
547 548 9.168451 TCTAAAATTTGCGGATTCAGTAATACA 57.832 29.630 0.00 0.00 0.00 2.29
548 549 9.997482 TTCTAAAATTTGCGGATTCAGTAATAC 57.003 29.630 0.00 0.00 0.00 1.89
549 550 9.997482 GTTCTAAAATTTGCGGATTCAGTAATA 57.003 29.630 0.00 0.00 0.00 0.98
550 551 8.739972 AGTTCTAAAATTTGCGGATTCAGTAAT 58.260 29.630 0.00 0.00 0.00 1.89
551 552 8.106247 AGTTCTAAAATTTGCGGATTCAGTAA 57.894 30.769 0.00 0.00 0.00 2.24
552 553 7.389330 TGAGTTCTAAAATTTGCGGATTCAGTA 59.611 33.333 0.00 0.00 0.00 2.74
553 554 6.206634 TGAGTTCTAAAATTTGCGGATTCAGT 59.793 34.615 0.00 0.00 0.00 3.41
554 555 6.611381 TGAGTTCTAAAATTTGCGGATTCAG 58.389 36.000 0.00 0.00 0.00 3.02
555 556 6.567687 TGAGTTCTAAAATTTGCGGATTCA 57.432 33.333 0.00 0.00 0.00 2.57
556 557 7.475840 AGATGAGTTCTAAAATTTGCGGATTC 58.524 34.615 0.00 0.00 30.96 2.52
557 558 7.396540 AGATGAGTTCTAAAATTTGCGGATT 57.603 32.000 0.00 0.00 30.96 3.01
558 559 8.682936 ATAGATGAGTTCTAAAATTTGCGGAT 57.317 30.769 0.00 0.00 40.32 4.18
559 560 8.397906 CAATAGATGAGTTCTAAAATTTGCGGA 58.602 33.333 0.00 0.00 40.32 5.54
560 561 8.184192 ACAATAGATGAGTTCTAAAATTTGCGG 58.816 33.333 0.00 0.00 40.32 5.69
561 562 9.003112 CACAATAGATGAGTTCTAAAATTTGCG 57.997 33.333 0.00 0.00 40.32 4.85
576 577 8.853077 AACTCATTTTGACTCACAATAGATGA 57.147 30.769 0.00 0.00 38.36 2.92
577 578 9.903682 AAAACTCATTTTGACTCACAATAGATG 57.096 29.630 0.00 0.00 36.64 2.90
584 585 9.554395 TGACTATAAAACTCATTTTGACTCACA 57.446 29.630 0.00 0.00 38.50 3.58
585 586 9.813080 GTGACTATAAAACTCATTTTGACTCAC 57.187 33.333 0.00 0.00 38.50 3.51
586 587 9.778741 AGTGACTATAAAACTCATTTTGACTCA 57.221 29.630 0.00 0.00 38.50 3.41
604 605 9.892130 CCTCCTAATCAGTTTAAAAGTGACTAT 57.108 33.333 4.11 0.00 43.17 2.12
605 606 8.877195 ACCTCCTAATCAGTTTAAAAGTGACTA 58.123 33.333 4.11 0.00 43.17 2.59
606 607 7.746703 ACCTCCTAATCAGTTTAAAAGTGACT 58.253 34.615 4.11 0.00 43.17 3.41
607 608 7.981102 ACCTCCTAATCAGTTTAAAAGTGAC 57.019 36.000 4.11 0.00 43.17 3.67
623 624 9.444915 GCCCAAAAGGAAGGTTATACCTCCTAA 62.445 44.444 13.62 0.00 41.41 2.69
624 625 8.058894 GCCCAAAAGGAAGGTTATACCTCCTA 62.059 46.154 13.62 0.00 41.41 2.94
625 626 7.347776 GCCCAAAAGGAAGGTTATACCTCCT 62.348 48.000 0.00 5.18 41.41 3.69
626 627 5.172455 GCCCAAAAGGAAGGTTATACCTCC 61.172 50.000 0.00 3.07 41.41 4.30
627 628 3.952323 GCCCAAAAGGAAGGTTATACCTC 59.048 47.826 0.00 0.00 41.41 3.85
628 629 3.309629 GGCCCAAAAGGAAGGTTATACCT 60.310 47.826 0.00 0.00 43.82 3.08
629 630 3.028850 GGCCCAAAAGGAAGGTTATACC 58.971 50.000 0.00 0.00 38.24 2.73
630 631 3.703921 TGGCCCAAAAGGAAGGTTATAC 58.296 45.455 0.00 0.00 38.24 1.47
631 632 4.618378 ATGGCCCAAAAGGAAGGTTATA 57.382 40.909 0.00 0.00 38.24 0.98
632 633 3.490060 ATGGCCCAAAAGGAAGGTTAT 57.510 42.857 0.00 0.00 38.24 1.89
633 634 3.268034 AATGGCCCAAAAGGAAGGTTA 57.732 42.857 0.00 0.00 38.24 2.85
634 635 2.116869 AATGGCCCAAAAGGAAGGTT 57.883 45.000 0.00 0.00 38.24 3.50
635 636 1.977854 GAAATGGCCCAAAAGGAAGGT 59.022 47.619 0.00 0.00 38.24 3.50
636 637 1.278985 GGAAATGGCCCAAAAGGAAGG 59.721 52.381 0.00 0.00 38.24 3.46
637 638 2.234661 GAGGAAATGGCCCAAAAGGAAG 59.765 50.000 0.00 0.00 38.24 3.46
638 639 2.158173 AGAGGAAATGGCCCAAAAGGAA 60.158 45.455 0.00 0.00 38.24 3.36
639 640 1.432807 AGAGGAAATGGCCCAAAAGGA 59.567 47.619 0.00 0.00 38.24 3.36
640 641 1.551883 CAGAGGAAATGGCCCAAAAGG 59.448 52.381 0.00 0.00 39.47 3.11
641 642 2.528564 TCAGAGGAAATGGCCCAAAAG 58.471 47.619 0.00 0.00 0.00 2.27
642 643 2.632512 GTTCAGAGGAAATGGCCCAAAA 59.367 45.455 0.00 0.00 34.13 2.44
643 644 2.247358 GTTCAGAGGAAATGGCCCAAA 58.753 47.619 0.00 0.00 34.13 3.28
644 645 1.146774 TGTTCAGAGGAAATGGCCCAA 59.853 47.619 0.00 0.00 34.13 4.12
645 646 0.776810 TGTTCAGAGGAAATGGCCCA 59.223 50.000 0.00 0.00 34.13 5.36
646 647 1.004745 TCTGTTCAGAGGAAATGGCCC 59.995 52.381 0.00 0.00 34.13 5.80
647 648 2.026822 TCTCTGTTCAGAGGAAATGGCC 60.027 50.000 23.86 0.00 36.62 5.36
648 649 3.340814 TCTCTGTTCAGAGGAAATGGC 57.659 47.619 23.86 0.00 36.62 4.40
649 650 4.096081 GCATTCTCTGTTCAGAGGAAATGG 59.904 45.833 26.71 17.31 33.94 3.16
650 651 4.942483 AGCATTCTCTGTTCAGAGGAAATG 59.058 41.667 24.28 24.28 35.24 2.32
651 652 4.942483 CAGCATTCTCTGTTCAGAGGAAAT 59.058 41.667 23.86 16.28 36.62 2.17
652 653 4.321718 CAGCATTCTCTGTTCAGAGGAAA 58.678 43.478 23.86 15.04 36.62 3.13
653 654 3.307269 CCAGCATTCTCTGTTCAGAGGAA 60.307 47.826 23.86 17.83 36.62 3.36
654 655 2.235650 CCAGCATTCTCTGTTCAGAGGA 59.764 50.000 23.86 18.67 36.62 3.71
655 656 2.235650 TCCAGCATTCTCTGTTCAGAGG 59.764 50.000 23.86 12.82 36.62 3.69
656 657 3.606595 TCCAGCATTCTCTGTTCAGAG 57.393 47.619 20.01 20.01 37.28 3.35
657 658 3.262660 ACATCCAGCATTCTCTGTTCAGA 59.737 43.478 2.49 2.49 32.32 3.27
658 659 3.607741 ACATCCAGCATTCTCTGTTCAG 58.392 45.455 0.00 0.00 32.32 3.02
659 660 3.708403 ACATCCAGCATTCTCTGTTCA 57.292 42.857 0.00 0.00 32.32 3.18
660 661 4.436584 CGAAACATCCAGCATTCTCTGTTC 60.437 45.833 0.00 0.00 32.32 3.18
661 662 3.438087 CGAAACATCCAGCATTCTCTGTT 59.562 43.478 0.00 0.00 32.32 3.16
662 663 3.005554 CGAAACATCCAGCATTCTCTGT 58.994 45.455 0.00 0.00 32.32 3.41
663 664 3.063180 GTCGAAACATCCAGCATTCTCTG 59.937 47.826 0.00 0.00 0.00 3.35
664 665 3.265791 GTCGAAACATCCAGCATTCTCT 58.734 45.455 0.00 0.00 0.00 3.10
665 666 2.029728 CGTCGAAACATCCAGCATTCTC 59.970 50.000 0.00 0.00 0.00 2.87
666 667 2.002586 CGTCGAAACATCCAGCATTCT 58.997 47.619 0.00 0.00 0.00 2.40
667 668 1.999735 TCGTCGAAACATCCAGCATTC 59.000 47.619 0.00 0.00 0.00 2.67
668 669 1.732259 GTCGTCGAAACATCCAGCATT 59.268 47.619 0.00 0.00 0.00 3.56
669 670 1.359848 GTCGTCGAAACATCCAGCAT 58.640 50.000 0.00 0.00 0.00 3.79
670 671 0.669318 GGTCGTCGAAACATCCAGCA 60.669 55.000 0.00 0.00 0.00 4.41
671 672 0.669318 TGGTCGTCGAAACATCCAGC 60.669 55.000 0.00 0.00 0.00 4.85
672 673 1.726791 CTTGGTCGTCGAAACATCCAG 59.273 52.381 0.00 0.00 32.13 3.86
673 674 1.790755 CTTGGTCGTCGAAACATCCA 58.209 50.000 0.00 0.00 0.00 3.41
674 675 0.442699 GCTTGGTCGTCGAAACATCC 59.557 55.000 0.00 0.00 0.00 3.51
675 676 0.093026 CGCTTGGTCGTCGAAACATC 59.907 55.000 0.00 0.00 0.00 3.06
676 677 0.319211 TCGCTTGGTCGTCGAAACAT 60.319 50.000 0.00 0.00 0.00 2.71
677 678 0.937699 CTCGCTTGGTCGTCGAAACA 60.938 55.000 0.00 0.00 0.00 2.83
678 679 0.662374 TCTCGCTTGGTCGTCGAAAC 60.662 55.000 0.00 0.00 0.00 2.78
679 680 0.386858 CTCTCGCTTGGTCGTCGAAA 60.387 55.000 0.00 0.00 0.00 3.46
680 681 1.209383 CTCTCGCTTGGTCGTCGAA 59.791 57.895 0.00 0.00 0.00 3.71
681 682 2.868196 CTCTCGCTTGGTCGTCGA 59.132 61.111 0.00 0.00 0.00 4.20
682 683 2.876645 GCTCTCGCTTGGTCGTCG 60.877 66.667 0.00 0.00 0.00 5.12
683 684 2.089349 GTGCTCTCGCTTGGTCGTC 61.089 63.158 0.00 0.00 36.97 4.20
684 685 2.049063 GTGCTCTCGCTTGGTCGT 60.049 61.111 0.00 0.00 36.97 4.34
685 686 2.049156 TGTGCTCTCGCTTGGTCG 60.049 61.111 0.00 0.00 36.97 4.79
686 687 0.243907 TAGTGTGCTCTCGCTTGGTC 59.756 55.000 0.00 0.00 36.97 4.02
687 688 0.244994 CTAGTGTGCTCTCGCTTGGT 59.755 55.000 0.00 0.00 36.97 3.67
688 689 0.459237 CCTAGTGTGCTCTCGCTTGG 60.459 60.000 0.00 0.00 35.42 3.61
689 690 0.528017 TCCTAGTGTGCTCTCGCTTG 59.472 55.000 0.00 0.00 36.97 4.01
690 691 0.814457 CTCCTAGTGTGCTCTCGCTT 59.186 55.000 0.00 0.00 36.97 4.68
691 692 0.322997 ACTCCTAGTGTGCTCTCGCT 60.323 55.000 0.00 0.00 36.97 4.93
692 693 0.528470 AACTCCTAGTGTGCTCTCGC 59.472 55.000 0.00 0.00 0.00 5.03
693 694 2.729467 CGAAACTCCTAGTGTGCTCTCG 60.729 54.545 0.00 0.00 0.00 4.04
694 695 2.488545 TCGAAACTCCTAGTGTGCTCTC 59.511 50.000 0.00 0.00 0.00 3.20
695 696 2.229302 GTCGAAACTCCTAGTGTGCTCT 59.771 50.000 0.00 0.00 0.00 4.09
696 697 2.597520 GTCGAAACTCCTAGTGTGCTC 58.402 52.381 0.00 0.00 0.00 4.26
697 698 1.272769 GGTCGAAACTCCTAGTGTGCT 59.727 52.381 0.00 0.00 0.00 4.40
698 699 1.000506 TGGTCGAAACTCCTAGTGTGC 59.999 52.381 0.00 0.00 0.00 4.57
699 700 3.594603 ATGGTCGAAACTCCTAGTGTG 57.405 47.619 0.00 0.00 0.00 3.82
700 701 4.562963 GGAAATGGTCGAAACTCCTAGTGT 60.563 45.833 0.00 0.00 0.00 3.55
701 702 3.933332 GGAAATGGTCGAAACTCCTAGTG 59.067 47.826 0.00 0.00 0.00 2.74
702 703 3.368116 CGGAAATGGTCGAAACTCCTAGT 60.368 47.826 0.00 0.00 0.00 2.57
703 704 3.187700 CGGAAATGGTCGAAACTCCTAG 58.812 50.000 0.00 0.00 0.00 3.02
704 705 2.564062 ACGGAAATGGTCGAAACTCCTA 59.436 45.455 0.00 0.00 0.00 2.94
818 819 4.265893 GAGGAAGGAGGAAATTCAGTTCC 58.734 47.826 0.00 0.00 46.48 3.62
892 893 3.958147 AAGACGATGGCGCTGGTGG 62.958 63.158 7.64 0.00 42.48 4.61
898 899 1.424493 CTTGGAGAAGACGATGGCGC 61.424 60.000 0.00 0.00 42.48 6.53
900 901 1.092345 GGCTTGGAGAAGACGATGGC 61.092 60.000 0.00 0.00 0.00 4.40
959 967 1.153939 CTCGGTGAGAGTGGAAGCG 60.154 63.158 0.00 0.00 41.99 4.68
985 993 1.101331 GCCATTGGAGAAGGAGCTTG 58.899 55.000 6.95 0.00 0.00 4.01
1127 1142 1.154035 GCCACGCCAAGAAAATCGG 60.154 57.895 0.00 0.00 0.00 4.18
1833 1889 8.012957 AGATCGAAACAGAGGACACTAATTAT 57.987 34.615 0.00 0.00 0.00 1.28
1834 1890 7.406031 AGATCGAAACAGAGGACACTAATTA 57.594 36.000 0.00 0.00 0.00 1.40
1835 1891 6.287589 AGATCGAAACAGAGGACACTAATT 57.712 37.500 0.00 0.00 0.00 1.40
1836 1892 5.923733 AGATCGAAACAGAGGACACTAAT 57.076 39.130 0.00 0.00 0.00 1.73
1837 1893 5.243060 TGAAGATCGAAACAGAGGACACTAA 59.757 40.000 0.00 0.00 0.00 2.24
1838 1894 4.765339 TGAAGATCGAAACAGAGGACACTA 59.235 41.667 0.00 0.00 0.00 2.74
1865 1921 3.421888 CGAAAATGTTTCAACAAGGCTCG 59.578 43.478 0.00 0.48 43.03 5.03
1866 1922 4.359706 ACGAAAATGTTTCAACAAGGCTC 58.640 39.130 0.00 0.00 43.03 4.70
1871 1927 6.382608 TCTGTCAACGAAAATGTTTCAACAA 58.617 32.000 0.00 0.00 43.03 2.83
1878 1934 4.130118 AGCTCTCTGTCAACGAAAATGTT 58.870 39.130 0.00 0.00 0.00 2.71
1887 1943 3.988819 AGAGTGAAAGCTCTCTGTCAAC 58.011 45.455 2.03 0.00 41.62 3.18
1952 2008 0.725117 GGAAGTGACGCGGGTAAATG 59.275 55.000 12.47 0.00 0.00 2.32
1957 2013 2.030562 CTTGGAAGTGACGCGGGT 59.969 61.111 12.47 4.12 0.00 5.28
1962 2018 2.225727 GGCTTTTACCTTGGAAGTGACG 59.774 50.000 0.00 0.00 0.00 4.35
1984 2040 6.483307 CCATGTGCAAAAGCTAGCTATAGTTA 59.517 38.462 19.70 2.76 0.00 2.24
1986 2042 4.818546 CCATGTGCAAAAGCTAGCTATAGT 59.181 41.667 19.70 0.00 0.00 2.12
1989 2045 3.624777 ACCATGTGCAAAAGCTAGCTAT 58.375 40.909 19.70 7.46 0.00 2.97
1991 2047 1.915141 ACCATGTGCAAAAGCTAGCT 58.085 45.000 12.68 12.68 0.00 3.32
2029 2085 8.629158 TGAGTTGTTTGTGCTAAATTTGTCTAT 58.371 29.630 0.00 0.00 0.00 1.98
2034 2090 7.697352 TGATGAGTTGTTTGTGCTAAATTTG 57.303 32.000 0.00 0.00 0.00 2.32
2037 2093 6.183360 TGGTTGATGAGTTGTTTGTGCTAAAT 60.183 34.615 0.00 0.00 0.00 1.40
2047 2103 3.884895 TGTCTGTGGTTGATGAGTTGTT 58.115 40.909 0.00 0.00 0.00 2.83
2049 2105 4.576053 TCTTTGTCTGTGGTTGATGAGTTG 59.424 41.667 0.00 0.00 0.00 3.16
2065 2121 2.161211 GCTGAGCAAGGTGATCTTTGTC 59.839 50.000 0.00 0.00 33.24 3.18
2068 2124 2.875094 AGCTGAGCAAGGTGATCTTT 57.125 45.000 7.39 0.00 33.24 2.52
2072 2128 4.223923 ACTTACTTAGCTGAGCAAGGTGAT 59.776 41.667 19.52 0.00 37.17 3.06
2081 2137 7.095439 CCTGAAGAAAACACTTACTTAGCTGAG 60.095 40.741 3.53 3.53 0.00 3.35
2093 2168 3.744660 AGATTCGCCTGAAGAAAACACT 58.255 40.909 0.00 0.00 37.57 3.55
2105 2180 3.933861 ACTTAAATGGGAGATTCGCCT 57.066 42.857 6.39 0.00 0.00 5.52
2127 2202 7.679400 GCGAATGAAAAATGTATGTCCATCTCA 60.679 37.037 0.00 0.00 0.00 3.27
2129 2204 6.095300 TGCGAATGAAAAATGTATGTCCATCT 59.905 34.615 0.00 0.00 0.00 2.90
2130 2205 6.264832 TGCGAATGAAAAATGTATGTCCATC 58.735 36.000 0.00 0.00 0.00 3.51
2151 2227 6.567769 AGTGTGTATTTTGTTCTTTTTGCG 57.432 33.333 0.00 0.00 0.00 4.85
2185 2261 6.205658 GGGAGGAAGTACATGAAGCATTTATC 59.794 42.308 0.00 0.00 0.00 1.75
2204 2280 2.108168 CTCATAAACACCGAGGGAGGA 58.892 52.381 0.00 0.00 34.73 3.71
2210 2286 1.134491 GGGGGTCTCATAAACACCGAG 60.134 57.143 0.00 0.00 41.41 4.63
2213 2289 1.913419 TGAGGGGGTCTCATAAACACC 59.087 52.381 0.00 0.00 46.71 4.16
2222 2298 3.229697 CCCAAAATATGAGGGGGTCTC 57.770 52.381 0.00 0.00 42.74 3.36
2263 2339 9.674824 ACGGAGTATCTTATATTTTGTTAGTCG 57.325 33.333 0.00 0.00 41.94 4.18
2286 2362 9.840427 ACTATATTTTGAACAGAAATTCAACGG 57.160 29.630 0.55 0.00 45.84 4.44
2341 2433 8.478066 GGCTCTTCCAATTTTTGACCTATAAAT 58.522 33.333 0.00 0.00 34.01 1.40
2347 2439 3.575805 TGGCTCTTCCAATTTTTGACCT 58.424 40.909 0.00 0.00 43.21 3.85
2362 2482 3.308473 GGACCTCCTTGTATTTTGGCTCT 60.308 47.826 0.00 0.00 0.00 4.09
2365 2485 2.802719 TGGACCTCCTTGTATTTTGGC 58.197 47.619 0.00 0.00 36.82 4.52
2374 2494 3.621558 GAGGGTTTATTGGACCTCCTTG 58.378 50.000 0.00 0.00 42.87 3.61
2380 2500 0.106868 CGGGGAGGGTTTATTGGACC 60.107 60.000 0.00 0.00 36.41 4.46
2381 2501 0.913924 TCGGGGAGGGTTTATTGGAC 59.086 55.000 0.00 0.00 0.00 4.02
2382 2502 1.493022 CATCGGGGAGGGTTTATTGGA 59.507 52.381 0.00 0.00 0.00 3.53
2398 2518 4.855531 TCGTGATACACAATACTCCATCG 58.144 43.478 0.00 0.00 33.40 3.84
2399 2519 6.073327 TCTCGTGATACACAATACTCCATC 57.927 41.667 0.00 0.00 33.40 3.51
2408 2528 5.471556 TTAACCCTTCTCGTGATACACAA 57.528 39.130 0.00 0.00 33.40 3.33
2416 2536 5.941948 AATCTTGTTTAACCCTTCTCGTG 57.058 39.130 0.00 0.00 0.00 4.35
2440 2565 7.953493 AGAGGAATGGTTGGGAAAAATAACTTA 59.047 33.333 0.00 0.00 0.00 2.24
2449 2574 1.357761 GGGAGAGGAATGGTTGGGAAA 59.642 52.381 0.00 0.00 0.00 3.13
2483 2608 4.783621 TGCGCACCCTGAGATGGC 62.784 66.667 5.66 0.00 0.00 4.40
2494 2619 0.528684 GAGGTAGTGGAGATGCGCAC 60.529 60.000 14.90 7.11 0.00 5.34
2508 2633 4.202749 TGACCCACTAGGAAAGAAGAGGTA 60.203 45.833 0.00 0.00 39.89 3.08
2511 2636 4.467795 TGATGACCCACTAGGAAAGAAGAG 59.532 45.833 0.00 0.00 39.89 2.85
2542 2667 1.700042 GCCATCGGAGGTTGGAGGAT 61.700 60.000 0.31 0.00 33.95 3.24
2547 2672 1.153289 CAGAGCCATCGGAGGTTGG 60.153 63.158 0.00 0.00 34.95 3.77
2548 2673 1.817099 GCAGAGCCATCGGAGGTTG 60.817 63.158 0.00 0.00 0.00 3.77
2549 2674 2.586792 GCAGAGCCATCGGAGGTT 59.413 61.111 0.00 0.00 0.00 3.50


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.