Multiple sequence alignment - TraesCS7D01G146900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G146900 chr7D 100.000 3494 0 0 1 3494 93883279 93879786 0.000000e+00 6453.0
1 TraesCS7D01G146900 chr7A 93.746 3502 163 29 15 3494 96817026 96813559 0.000000e+00 5203.0
2 TraesCS7D01G146900 chr7A 88.743 2585 182 48 130 2646 97024307 97021764 0.000000e+00 3061.0
3 TraesCS7D01G146900 chr7A 84.541 414 41 16 8 413 96829738 96829340 4.230000e-104 388.0
4 TraesCS7D01G146900 chr7A 89.100 211 16 3 3037 3240 97021202 97020992 4.480000e-64 255.0
5 TraesCS7D01G146900 chr7A 88.710 186 20 1 2710 2895 97021645 97021461 3.510000e-55 226.0
6 TraesCS7D01G146900 chr7A 85.714 133 7 4 3366 3489 97020380 97020251 2.830000e-26 130.0
7 TraesCS7D01G146900 chr7B 91.794 2949 152 47 597 3494 47604970 47602061 0.000000e+00 4023.0
8 TraesCS7D01G146900 chr7B 90.984 1575 100 22 475 2030 47341914 47340363 0.000000e+00 2084.0
9 TraesCS7D01G146900 chr7B 92.000 625 41 7 2031 2646 47340401 47339777 0.000000e+00 869.0
10 TraesCS7D01G146900 chr7B 89.967 299 20 7 2 299 47342454 47342165 9.150000e-101 377.0
11 TraesCS7D01G146900 chr7B 77.381 504 63 29 130 605 47609123 47608643 5.790000e-63 252.0
12 TraesCS7D01G146900 chr7B 79.608 255 38 11 14 262 57638688 57638442 1.670000e-38 171.0
13 TraesCS7D01G146900 chr7B 90.351 114 11 0 3037 3150 47339215 47339102 2.170000e-32 150.0
14 TraesCS7D01G146900 chr7B 96.000 50 2 0 3445 3494 47339106 47339057 8.040000e-12 82.4
15 TraesCS7D01G146900 chr4D 78.968 252 40 10 13 262 482248898 482249138 3.610000e-35 159.0
16 TraesCS7D01G146900 chr4D 83.453 139 21 2 10 147 16669060 16668923 1.020000e-25 128.0
17 TraesCS7D01G146900 chr5A 78.884 251 39 10 13 262 660317841 660317604 1.300000e-34 158.0
18 TraesCS7D01G146900 chr4A 83.099 142 17 6 3 140 583815228 583815366 4.740000e-24 122.0
19 TraesCS7D01G146900 chr2B 81.159 138 24 2 12 148 13242107 13242243 3.690000e-20 110.0
20 TraesCS7D01G146900 chr6D 73.234 269 54 15 2226 2485 395369990 395369731 8.040000e-12 82.4
21 TraesCS7D01G146900 chr6D 82.292 96 13 4 2233 2326 395094249 395094156 2.890000e-11 80.5
22 TraesCS7D01G146900 chr2D 82.000 100 14 4 2226 2323 17831540 17831637 8.040000e-12 82.4
23 TraesCS7D01G146900 chr2D 86.885 61 6 2 2227 2286 17956153 17956212 2.250000e-07 67.6
24 TraesCS7D01G146900 chr2A 73.234 269 54 14 2226 2485 19126178 19126437 8.040000e-12 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G146900 chr7D 93879786 93883279 3493 True 6453.00 6453 100.00000 1 3494 1 chr7D.!!$R1 3493
1 TraesCS7D01G146900 chr7A 96813559 96817026 3467 True 5203.00 5203 93.74600 15 3494 1 chr7A.!!$R1 3479
2 TraesCS7D01G146900 chr7A 97020251 97024307 4056 True 918.00 3061 88.06675 130 3489 4 chr7A.!!$R3 3359
3 TraesCS7D01G146900 chr7B 47602061 47609123 7062 True 2137.50 4023 84.58750 130 3494 2 chr7B.!!$R3 3364
4 TraesCS7D01G146900 chr7B 47339057 47342454 3397 True 712.48 2084 91.86040 2 3494 5 chr7B.!!$R2 3492

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
767 4585 0.179067 TTTTCCTGACCGCGTCTTGT 60.179 50.0 4.92 0.0 33.15 3.16 F
771 4589 0.234884 CCTGACCGCGTCTTGTTTTC 59.765 55.0 4.92 0.0 33.15 2.29 F
1431 5280 0.532862 GTTGGATCATCACCGCCGAT 60.533 55.0 0.00 0.0 0.00 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1591 5446 1.027357 GATGGCGTAGGGAAGTCGTA 58.973 55.000 0.0 0.0 0.00 3.43 R
1594 5449 1.067582 CCGATGGCGTAGGGAAGTC 59.932 63.158 0.0 0.0 35.23 3.01 R
3151 8056 0.046242 TCCATCCCTTCCATCCCTGT 59.954 55.000 0.0 0.0 0.00 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
141 143 4.078537 TGGACCCTATGTTGTGTTTGATG 58.921 43.478 0.00 0.00 0.00 3.07
176 179 4.427096 TGTGAAAGCAACGAACTTGAAA 57.573 36.364 0.00 0.00 30.42 2.69
179 182 3.796178 TGAAAGCAACGAACTTGAAATGC 59.204 39.130 0.00 0.00 30.42 3.56
196 199 4.380841 AATGCTGGTGAAATATGTGCAG 57.619 40.909 0.00 0.00 32.42 4.41
198 201 2.488937 TGCTGGTGAAATATGTGCAGTG 59.511 45.455 0.00 0.00 0.00 3.66
264 268 8.161425 AGTATAGTTGAAACTGGGTTTGTACAT 58.839 33.333 5.95 0.00 40.07 2.29
265 269 9.439500 GTATAGTTGAAACTGGGTTTGTACATA 57.561 33.333 5.95 0.00 40.07 2.29
266 270 6.628919 AGTTGAAACTGGGTTTGTACATAC 57.371 37.500 7.83 7.83 37.98 2.39
294 298 6.869315 AAAAAGAGAGGAAGAAGTAGCAAC 57.131 37.500 0.00 0.00 0.00 4.17
299 303 4.561105 AGAGGAAGAAGTAGCAACGAAAG 58.439 43.478 0.00 0.00 0.00 2.62
300 304 4.281182 AGAGGAAGAAGTAGCAACGAAAGA 59.719 41.667 0.00 0.00 0.00 2.52
377 385 8.410912 AGACCCTCAAAATGTTTAAAGTTACAC 58.589 33.333 0.00 0.00 0.00 2.90
378 386 7.494211 ACCCTCAAAATGTTTAAAGTTACACC 58.506 34.615 0.00 0.00 0.00 4.16
384 392 8.964150 CAAAATGTTTAAAGTTACACCTACAGC 58.036 33.333 0.00 0.00 0.00 4.40
385 393 8.459911 AAATGTTTAAAGTTACACCTACAGCT 57.540 30.769 0.00 0.00 0.00 4.24
386 394 6.854496 TGTTTAAAGTTACACCTACAGCTG 57.146 37.500 13.48 13.48 0.00 4.24
388 396 7.499292 TGTTTAAAGTTACACCTACAGCTGTA 58.501 34.615 24.63 24.63 0.00 2.74
389 397 7.439056 TGTTTAAAGTTACACCTACAGCTGTAC 59.561 37.037 22.67 13.61 0.00 2.90
410 490 9.240734 CTGTACTAGTAAGTTTTAGAAGGAGGA 57.759 37.037 3.61 0.00 37.15 3.71
457 537 3.313803 GGCTAGAAATGCTTAAGCTGGTC 59.686 47.826 26.90 19.37 42.66 4.02
459 539 4.272261 GCTAGAAATGCTTAAGCTGGTCTC 59.728 45.833 26.90 15.66 42.66 3.36
460 540 3.615155 AGAAATGCTTAAGCTGGTCTCC 58.385 45.455 26.90 10.41 42.66 3.71
462 542 0.462759 ATGCTTAAGCTGGTCTCCGC 60.463 55.000 26.90 0.00 42.66 5.54
463 543 2.167861 GCTTAAGCTGGTCTCCGCG 61.168 63.158 20.38 0.00 38.21 6.46
464 544 1.519455 CTTAAGCTGGTCTCCGCGG 60.519 63.158 22.12 22.12 0.00 6.46
537 658 3.053896 CCGCGAAACACTTCCCCC 61.054 66.667 8.23 0.00 0.00 5.40
572 693 4.765449 TGGCTGCTGCTACGGCTG 62.765 66.667 15.64 0.00 41.87 4.85
584 705 2.516048 TACGGCTGCTCCTCCTCCTT 62.516 60.000 0.00 0.00 0.00 3.36
588 709 1.271127 GCTGCTCCTCCTCCTTTCCT 61.271 60.000 0.00 0.00 0.00 3.36
590 711 0.987294 TGCTCCTCCTCCTTTCCTTG 59.013 55.000 0.00 0.00 0.00 3.61
766 4584 0.512952 CTTTTCCTGACCGCGTCTTG 59.487 55.000 4.92 0.00 33.15 3.02
767 4585 0.179067 TTTTCCTGACCGCGTCTTGT 60.179 50.000 4.92 0.00 33.15 3.16
771 4589 0.234884 CCTGACCGCGTCTTGTTTTC 59.765 55.000 4.92 0.00 33.15 2.29
810 4631 1.313812 GGCGATATCCGTCCCGATCT 61.314 60.000 0.00 0.00 41.15 2.75
812 4633 1.740297 CGATATCCGTCCCGATCTCT 58.260 55.000 0.00 0.00 0.00 3.10
947 4771 2.165437 GCATCTACGGGAGAGATCATCC 59.835 54.545 8.18 8.18 37.70 3.51
1155 5004 2.105128 CTGCCGGACGACATCCTC 59.895 66.667 5.05 0.00 46.69 3.71
1167 5016 3.811497 ACGACATCCTCATGTGCATATTG 59.189 43.478 0.00 0.00 43.79 1.90
1406 5255 1.043816 AGGTATGTGATCGGCTCCAG 58.956 55.000 0.00 0.00 0.00 3.86
1431 5280 0.532862 GTTGGATCATCACCGCCGAT 60.533 55.000 0.00 0.00 0.00 4.18
1591 5446 1.813786 GCACTCCACTCTTAGTCGACT 59.186 52.381 23.66 23.66 0.00 4.18
1592 5447 3.008330 GCACTCCACTCTTAGTCGACTA 58.992 50.000 21.25 21.25 0.00 2.59
1593 5448 3.181508 GCACTCCACTCTTAGTCGACTAC 60.182 52.174 24.60 5.31 0.00 2.73
1594 5449 3.062369 CACTCCACTCTTAGTCGACTACG 59.938 52.174 24.60 22.12 41.26 3.51
1595 5450 3.056250 ACTCCACTCTTAGTCGACTACGA 60.056 47.826 24.60 24.86 46.56 3.43
1608 5463 0.322816 ACTACGACTTCCCTACGCCA 60.323 55.000 0.00 0.00 0.00 5.69
1770 5625 1.228862 ATGGACTTGGTTGCCACCC 60.229 57.895 4.19 0.00 43.49 4.61
1792 5647 5.286438 CCCATGTTGATTATGCAGATTGTG 58.714 41.667 0.00 0.00 0.00 3.33
1862 5717 0.319900 ACGTTTGATCTCAGTGCGCT 60.320 50.000 9.73 0.00 0.00 5.92
1960 5815 0.887247 TCCATGCGGTGATTTGTTGG 59.113 50.000 0.00 0.00 0.00 3.77
2078 5933 0.877649 CTTGAGGATGCGACGGATGG 60.878 60.000 6.58 0.00 0.00 3.51
2111 5966 1.274712 CCTGAGGATAGGGAGGATGC 58.725 60.000 0.00 0.00 34.06 3.91
2511 6372 5.237127 CGATTAGCCACAAGATGCTTCATTA 59.763 40.000 2.07 0.00 39.00 1.90
2512 6373 6.072838 CGATTAGCCACAAGATGCTTCATTAT 60.073 38.462 2.07 0.00 39.00 1.28
2513 6374 7.118245 CGATTAGCCACAAGATGCTTCATTATA 59.882 37.037 2.07 0.00 39.00 0.98
2514 6375 7.496529 TTAGCCACAAGATGCTTCATTATAC 57.503 36.000 2.07 0.00 39.00 1.47
2516 6377 5.530171 AGCCACAAGATGCTTCATTATACTG 59.470 40.000 2.07 0.00 32.94 2.74
2646 6514 2.224549 TGTGTTTATGTGGTGCGCTAAC 59.775 45.455 9.73 4.74 0.00 2.34
2801 6761 4.322198 CCATTGCCTCAGTTTATTTGCTGT 60.322 41.667 0.00 0.00 34.57 4.40
2803 6763 6.389091 CATTGCCTCAGTTTATTTGCTGTTA 58.611 36.000 0.00 0.00 34.57 2.41
2806 6766 6.991938 TGCCTCAGTTTATTTGCTGTTATTT 58.008 32.000 0.00 0.00 34.57 1.40
2934 6939 6.643770 GCTTATGTTCATAAGGGATTTGCATG 59.356 38.462 24.58 0.00 35.30 4.06
3147 8052 0.549950 ATCACCATGGAAGCCTGAGG 59.450 55.000 21.47 0.00 0.00 3.86
3150 8055 0.549950 ACCATGGAAGCCTGAGGATG 59.450 55.000 21.47 0.00 0.00 3.51
3151 8056 0.841961 CCATGGAAGCCTGAGGATGA 59.158 55.000 5.56 0.00 0.00 2.92
3152 8057 1.476471 CCATGGAAGCCTGAGGATGAC 60.476 57.143 5.56 0.00 0.00 3.06
3153 8058 1.211212 CATGGAAGCCTGAGGATGACA 59.789 52.381 0.65 0.00 0.00 3.58
3154 8059 0.907486 TGGAAGCCTGAGGATGACAG 59.093 55.000 0.65 0.00 0.00 3.51
3155 8060 0.179936 GGAAGCCTGAGGATGACAGG 59.820 60.000 0.65 9.28 0.00 4.00
3156 8061 0.179936 GAAGCCTGAGGATGACAGGG 59.820 60.000 0.65 0.00 0.00 4.45
3157 8062 0.252881 AAGCCTGAGGATGACAGGGA 60.253 55.000 0.65 0.00 0.00 4.20
3158 8063 0.030297 AGCCTGAGGATGACAGGGAT 60.030 55.000 0.65 0.00 0.00 3.85
3159 8064 0.108207 GCCTGAGGATGACAGGGATG 59.892 60.000 0.65 0.00 0.00 3.51
3160 8065 0.763652 CCTGAGGATGACAGGGATGG 59.236 60.000 0.00 0.00 0.00 3.51
3161 8066 1.693726 CCTGAGGATGACAGGGATGGA 60.694 57.143 0.00 0.00 0.00 3.41
3162 8067 2.121948 CTGAGGATGACAGGGATGGAA 58.878 52.381 0.00 0.00 0.00 3.53
3163 8068 2.104451 CTGAGGATGACAGGGATGGAAG 59.896 54.545 0.00 0.00 0.00 3.46
3164 8069 1.419387 GAGGATGACAGGGATGGAAGG 59.581 57.143 0.00 0.00 0.00 3.46
3165 8070 0.475906 GGATGACAGGGATGGAAGGG 59.524 60.000 0.00 0.00 0.00 3.95
3166 8071 1.511613 GATGACAGGGATGGAAGGGA 58.488 55.000 0.00 0.00 0.00 4.20
3167 8072 2.061061 GATGACAGGGATGGAAGGGAT 58.939 52.381 0.00 0.00 0.00 3.85
3168 8073 1.216064 TGACAGGGATGGAAGGGATG 58.784 55.000 0.00 0.00 0.00 3.51
3169 8074 0.475906 GACAGGGATGGAAGGGATGG 59.524 60.000 0.00 0.00 0.00 3.51
3170 8075 0.046242 ACAGGGATGGAAGGGATGGA 59.954 55.000 0.00 0.00 0.00 3.41
3171 8076 0.769873 CAGGGATGGAAGGGATGGAG 59.230 60.000 0.00 0.00 0.00 3.86
3172 8077 0.402566 AGGGATGGAAGGGATGGAGG 60.403 60.000 0.00 0.00 0.00 4.30
3173 8078 0.699231 GGGATGGAAGGGATGGAGGT 60.699 60.000 0.00 0.00 0.00 3.85
3174 8079 1.416013 GGGATGGAAGGGATGGAGGTA 60.416 57.143 0.00 0.00 0.00 3.08
3175 8080 1.700186 GGATGGAAGGGATGGAGGTAC 59.300 57.143 0.00 0.00 0.00 3.34
3177 8082 2.661176 TGGAAGGGATGGAGGTACTT 57.339 50.000 0.00 0.00 41.55 2.24
3178 8083 2.478292 TGGAAGGGATGGAGGTACTTC 58.522 52.381 0.00 0.00 41.55 3.01
3189 8094 4.703897 TGGAGGTACTTCACTGAGTTTTG 58.296 43.478 7.35 0.00 40.34 2.44
3190 8095 3.498777 GGAGGTACTTCACTGAGTTTTGC 59.501 47.826 7.35 0.00 41.55 3.68
3191 8096 4.381411 GAGGTACTTCACTGAGTTTTGCT 58.619 43.478 0.00 0.00 41.55 3.91
3192 8097 4.130118 AGGTACTTCACTGAGTTTTGCTG 58.870 43.478 0.00 0.00 27.25 4.41
3193 8098 3.304057 GGTACTTCACTGAGTTTTGCTGC 60.304 47.826 0.00 0.00 0.00 5.25
3194 8099 2.368439 ACTTCACTGAGTTTTGCTGCA 58.632 42.857 0.00 0.00 0.00 4.41
3195 8100 2.754552 ACTTCACTGAGTTTTGCTGCAA 59.245 40.909 11.69 11.69 0.00 4.08
3196 8101 3.181493 ACTTCACTGAGTTTTGCTGCAAG 60.181 43.478 15.39 5.20 0.00 4.01
3197 8102 2.642427 TCACTGAGTTTTGCTGCAAGA 58.358 42.857 15.39 8.45 34.07 3.02
3198 8103 3.016031 TCACTGAGTTTTGCTGCAAGAA 58.984 40.909 15.39 9.98 34.07 2.52
3199 8104 3.633525 TCACTGAGTTTTGCTGCAAGAAT 59.366 39.130 15.39 10.50 34.07 2.40
3200 8105 3.734231 CACTGAGTTTTGCTGCAAGAATG 59.266 43.478 15.39 7.68 34.07 2.67
3201 8106 3.382546 ACTGAGTTTTGCTGCAAGAATGT 59.617 39.130 15.39 8.25 34.07 2.71
3202 8107 3.968649 TGAGTTTTGCTGCAAGAATGTC 58.031 40.909 15.39 9.16 34.07 3.06
3203 8108 3.380954 TGAGTTTTGCTGCAAGAATGTCA 59.619 39.130 15.39 11.41 34.07 3.58
3204 8109 4.038282 TGAGTTTTGCTGCAAGAATGTCAT 59.962 37.500 15.39 0.00 34.07 3.06
3205 8110 5.241285 TGAGTTTTGCTGCAAGAATGTCATA 59.759 36.000 15.39 0.00 34.07 2.15
3206 8111 6.071784 TGAGTTTTGCTGCAAGAATGTCATAT 60.072 34.615 15.39 0.00 34.07 1.78
3207 8112 6.694447 AGTTTTGCTGCAAGAATGTCATATT 58.306 32.000 15.39 0.00 34.07 1.28
3208 8113 7.156673 AGTTTTGCTGCAAGAATGTCATATTT 58.843 30.769 15.39 0.00 34.07 1.40
3209 8114 6.954616 TTTGCTGCAAGAATGTCATATTTG 57.045 33.333 15.39 5.33 34.07 2.32
3210 8115 5.900865 TGCTGCAAGAATGTCATATTTGA 57.099 34.783 0.00 0.00 34.07 2.69
3211 8116 6.459670 TGCTGCAAGAATGTCATATTTGAT 57.540 33.333 0.00 0.00 34.07 2.57
3212 8117 7.571080 TGCTGCAAGAATGTCATATTTGATA 57.429 32.000 0.00 0.00 34.07 2.15
3213 8118 8.173542 TGCTGCAAGAATGTCATATTTGATAT 57.826 30.769 0.00 0.00 35.43 1.63
3214 8119 9.287373 TGCTGCAAGAATGTCATATTTGATATA 57.713 29.630 0.00 0.00 33.06 0.86
3230 8135 8.668510 ATTTGATATAACAAGCTAGGTGACAG 57.331 34.615 0.00 0.00 0.00 3.51
3231 8136 6.791867 TGATATAACAAGCTAGGTGACAGT 57.208 37.500 0.00 0.00 0.00 3.55
3232 8137 6.573434 TGATATAACAAGCTAGGTGACAGTG 58.427 40.000 0.00 0.00 0.00 3.66
3233 8138 2.550830 AACAAGCTAGGTGACAGTGG 57.449 50.000 0.00 0.00 0.00 4.00
3234 8139 0.687354 ACAAGCTAGGTGACAGTGGG 59.313 55.000 0.00 0.00 0.00 4.61
3235 8140 0.976641 CAAGCTAGGTGACAGTGGGA 59.023 55.000 0.00 0.00 0.00 4.37
3236 8141 1.556911 CAAGCTAGGTGACAGTGGGAT 59.443 52.381 0.00 0.00 0.00 3.85
3237 8142 1.958288 AGCTAGGTGACAGTGGGATT 58.042 50.000 0.00 0.00 0.00 3.01
3238 8143 1.834263 AGCTAGGTGACAGTGGGATTC 59.166 52.381 0.00 0.00 0.00 2.52
3239 8144 1.134371 GCTAGGTGACAGTGGGATTCC 60.134 57.143 0.00 0.00 0.00 3.01
3240 8145 1.486726 CTAGGTGACAGTGGGATTCCC 59.513 57.143 15.40 15.40 45.71 3.97
3253 8158 4.251103 GGGATTCCCAGGTTTTGATACT 57.749 45.455 17.36 0.00 44.65 2.12
3254 8159 5.382664 GGGATTCCCAGGTTTTGATACTA 57.617 43.478 17.36 0.00 44.65 1.82
3255 8160 5.131067 GGGATTCCCAGGTTTTGATACTAC 58.869 45.833 17.36 0.00 44.65 2.73
3256 8161 5.339695 GGGATTCCCAGGTTTTGATACTACA 60.340 44.000 17.36 0.00 44.65 2.74
3257 8162 5.823045 GGATTCCCAGGTTTTGATACTACAG 59.177 44.000 0.00 0.00 0.00 2.74
3258 8163 6.352737 GGATTCCCAGGTTTTGATACTACAGA 60.353 42.308 0.00 0.00 0.00 3.41
3259 8164 6.442541 TTCCCAGGTTTTGATACTACAGAA 57.557 37.500 0.00 0.00 0.00 3.02
3260 8165 6.442541 TCCCAGGTTTTGATACTACAGAAA 57.557 37.500 0.00 0.00 0.00 2.52
3261 8166 7.027874 TCCCAGGTTTTGATACTACAGAAAT 57.972 36.000 0.00 0.00 0.00 2.17
3262 8167 6.884295 TCCCAGGTTTTGATACTACAGAAATG 59.116 38.462 0.00 0.00 0.00 2.32
3263 8168 6.659242 CCCAGGTTTTGATACTACAGAAATGT 59.341 38.462 0.00 0.00 0.00 2.71
3264 8169 7.148239 CCCAGGTTTTGATACTACAGAAATGTC 60.148 40.741 0.00 0.00 0.00 3.06
3265 8170 7.390440 CCAGGTTTTGATACTACAGAAATGTCA 59.610 37.037 0.00 0.00 0.00 3.58
3266 8171 8.950210 CAGGTTTTGATACTACAGAAATGTCAT 58.050 33.333 0.00 0.00 0.00 3.06
3277 8182 8.739972 ACTACAGAAATGTCATAATGGTTTTCC 58.260 33.333 0.00 0.00 41.14 3.13
3300 8205 5.605534 CAGGATGGTAACTTAGTCTCATGG 58.394 45.833 0.00 0.00 37.61 3.66
3301 8206 5.363868 CAGGATGGTAACTTAGTCTCATGGA 59.636 44.000 0.00 0.00 37.61 3.41
3302 8207 5.964477 AGGATGGTAACTTAGTCTCATGGAA 59.036 40.000 0.00 0.00 37.61 3.53
3303 8208 6.049790 GGATGGTAACTTAGTCTCATGGAAC 58.950 44.000 0.00 0.00 37.61 3.62
3304 8209 6.127026 GGATGGTAACTTAGTCTCATGGAACT 60.127 42.308 6.23 6.23 37.61 3.01
3305 8210 7.069578 GGATGGTAACTTAGTCTCATGGAACTA 59.930 40.741 0.00 0.00 37.61 2.24
3306 8211 7.406031 TGGTAACTTAGTCTCATGGAACTAG 57.594 40.000 7.77 0.00 37.61 2.57
3307 8212 6.952358 TGGTAACTTAGTCTCATGGAACTAGT 59.048 38.462 0.00 0.00 37.61 2.57
3308 8213 7.093902 TGGTAACTTAGTCTCATGGAACTAGTG 60.094 40.741 0.00 7.85 37.61 2.74
3309 8214 6.919775 AACTTAGTCTCATGGAACTAGTGT 57.080 37.500 0.00 8.29 0.00 3.55
3310 8215 8.954350 GTAACTTAGTCTCATGGAACTAGTGTA 58.046 37.037 0.00 0.00 0.00 2.90
3311 8216 8.418597 AACTTAGTCTCATGGAACTAGTGTAA 57.581 34.615 0.00 0.00 0.00 2.41
3312 8217 8.418597 ACTTAGTCTCATGGAACTAGTGTAAA 57.581 34.615 0.00 0.00 0.00 2.01
3313 8218 9.036980 ACTTAGTCTCATGGAACTAGTGTAAAT 57.963 33.333 0.00 0.00 0.00 1.40
3314 8219 9.522804 CTTAGTCTCATGGAACTAGTGTAAATC 57.477 37.037 0.00 0.00 0.00 2.17
3315 8220 7.482169 AGTCTCATGGAACTAGTGTAAATCA 57.518 36.000 0.00 0.00 0.00 2.57
3316 8221 7.907389 AGTCTCATGGAACTAGTGTAAATCAA 58.093 34.615 0.00 0.00 0.00 2.57
3317 8222 8.375506 AGTCTCATGGAACTAGTGTAAATCAAA 58.624 33.333 0.00 0.00 0.00 2.69
3318 8223 8.660373 GTCTCATGGAACTAGTGTAAATCAAAG 58.340 37.037 0.00 0.00 0.00 2.77
3319 8224 8.593679 TCTCATGGAACTAGTGTAAATCAAAGA 58.406 33.333 0.00 0.00 0.00 2.52
3320 8225 8.777865 TCATGGAACTAGTGTAAATCAAAGAG 57.222 34.615 0.00 0.00 0.00 2.85
3321 8226 8.593679 TCATGGAACTAGTGTAAATCAAAGAGA 58.406 33.333 0.00 0.00 0.00 3.10
3322 8227 9.219603 CATGGAACTAGTGTAAATCAAAGAGAA 57.780 33.333 0.00 0.00 0.00 2.87
3323 8228 8.603242 TGGAACTAGTGTAAATCAAAGAGAAC 57.397 34.615 0.00 0.00 0.00 3.01
3324 8229 8.208224 TGGAACTAGTGTAAATCAAAGAGAACA 58.792 33.333 0.00 0.00 0.00 3.18
3325 8230 8.713271 GGAACTAGTGTAAATCAAAGAGAACAG 58.287 37.037 0.00 0.00 0.00 3.16
3326 8231 9.262358 GAACTAGTGTAAATCAAAGAGAACAGT 57.738 33.333 0.00 0.00 0.00 3.55
3327 8232 9.614792 AACTAGTGTAAATCAAAGAGAACAGTT 57.385 29.630 0.00 0.00 0.00 3.16
3330 8235 8.379457 AGTGTAAATCAAAGAGAACAGTTACC 57.621 34.615 0.00 0.00 0.00 2.85
3331 8236 8.211629 AGTGTAAATCAAAGAGAACAGTTACCT 58.788 33.333 0.00 0.00 0.00 3.08
3332 8237 9.485206 GTGTAAATCAAAGAGAACAGTTACCTA 57.515 33.333 0.00 0.00 0.00 3.08
3339 8244 9.706691 TCAAAGAGAACAGTTACCTATTTACAG 57.293 33.333 0.00 0.00 0.00 2.74
3340 8245 9.490379 CAAAGAGAACAGTTACCTATTTACAGT 57.510 33.333 0.00 0.00 0.00 3.55
3341 8246 9.708092 AAAGAGAACAGTTACCTATTTACAGTC 57.292 33.333 0.00 0.00 0.00 3.51
3342 8247 8.418597 AGAGAACAGTTACCTATTTACAGTCA 57.581 34.615 0.00 0.00 0.00 3.41
3343 8248 9.036980 AGAGAACAGTTACCTATTTACAGTCAT 57.963 33.333 0.00 0.00 0.00 3.06
3344 8249 9.303537 GAGAACAGTTACCTATTTACAGTCATC 57.696 37.037 0.00 0.00 0.00 2.92
3345 8250 8.812972 AGAACAGTTACCTATTTACAGTCATCA 58.187 33.333 0.00 0.00 0.00 3.07
3346 8251 9.431887 GAACAGTTACCTATTTACAGTCATCAA 57.568 33.333 0.00 0.00 0.00 2.57
3347 8252 8.773404 ACAGTTACCTATTTACAGTCATCAAC 57.227 34.615 0.00 0.00 0.00 3.18
3348 8253 8.594550 ACAGTTACCTATTTACAGTCATCAACT 58.405 33.333 0.00 0.00 39.44 3.16
3349 8254 9.088512 CAGTTACCTATTTACAGTCATCAACTC 57.911 37.037 0.00 0.00 35.45 3.01
3350 8255 8.812972 AGTTACCTATTTACAGTCATCAACTCA 58.187 33.333 0.00 0.00 35.45 3.41
3351 8256 9.601217 GTTACCTATTTACAGTCATCAACTCAT 57.399 33.333 0.00 0.00 35.45 2.90
3352 8257 9.817809 TTACCTATTTACAGTCATCAACTCATC 57.182 33.333 0.00 0.00 35.45 2.92
3353 8258 7.851228 ACCTATTTACAGTCATCAACTCATCA 58.149 34.615 0.00 0.00 35.45 3.07
3354 8259 8.489489 ACCTATTTACAGTCATCAACTCATCAT 58.511 33.333 0.00 0.00 35.45 2.45
3355 8260 8.771766 CCTATTTACAGTCATCAACTCATCATG 58.228 37.037 0.00 0.00 35.45 3.07
3356 8261 9.322773 CTATTTACAGTCATCAACTCATCATGT 57.677 33.333 0.00 0.00 35.45 3.21
3358 8263 8.479313 TTTACAGTCATCAACTCATCATGTAC 57.521 34.615 0.00 0.00 35.45 2.90
3359 8264 6.041423 ACAGTCATCAACTCATCATGTACA 57.959 37.500 0.00 0.00 35.45 2.90
3360 8265 6.647229 ACAGTCATCAACTCATCATGTACAT 58.353 36.000 1.41 1.41 35.45 2.29
3361 8266 6.537660 ACAGTCATCAACTCATCATGTACATG 59.462 38.462 26.83 26.83 35.45 3.21
3362 8267 6.537660 CAGTCATCAACTCATCATGTACATGT 59.462 38.462 30.03 17.53 36.76 3.21
3363 8268 7.707893 CAGTCATCAACTCATCATGTACATGTA 59.292 37.037 30.03 19.33 36.76 2.29
3364 8269 7.708322 AGTCATCAACTCATCATGTACATGTAC 59.292 37.037 30.03 25.99 35.23 2.90
3365 8270 7.708322 GTCATCAACTCATCATGTACATGTACT 59.292 37.037 30.69 16.95 39.72 2.73
3366 8271 8.260114 TCATCAACTCATCATGTACATGTACTT 58.740 33.333 30.69 23.78 39.72 2.24
3367 8272 8.886719 CATCAACTCATCATGTACATGTACTTT 58.113 33.333 30.69 18.51 39.72 2.66
3368 8273 8.846943 TCAACTCATCATGTACATGTACTTTT 57.153 30.769 30.69 18.04 39.72 2.27
3369 8274 9.283768 TCAACTCATCATGTACATGTACTTTTT 57.716 29.630 30.69 16.76 39.72 1.94
3370 8275 9.546909 CAACTCATCATGTACATGTACTTTTTC 57.453 33.333 30.69 9.36 39.72 2.29
3371 8276 8.846943 ACTCATCATGTACATGTACTTTTTCA 57.153 30.769 30.69 14.35 39.72 2.69
3372 8277 8.939929 ACTCATCATGTACATGTACTTTTTCAG 58.060 33.333 30.69 21.94 39.72 3.02
3373 8278 9.154847 CTCATCATGTACATGTACTTTTTCAGA 57.845 33.333 30.69 19.37 39.72 3.27
3374 8279 9.671279 TCATCATGTACATGTACTTTTTCAGAT 57.329 29.630 30.69 20.42 39.72 2.90
3377 8282 8.236586 TCATGTACATGTACTTTTTCAGATTGC 58.763 33.333 30.69 5.64 39.72 3.56
3378 8283 7.744087 TGTACATGTACTTTTTCAGATTGCT 57.256 32.000 30.69 0.00 37.00 3.91
3379 8284 7.806690 TGTACATGTACTTTTTCAGATTGCTC 58.193 34.615 30.69 4.71 37.00 4.26
3380 8285 6.882610 ACATGTACTTTTTCAGATTGCTCA 57.117 33.333 0.00 0.00 0.00 4.26
3381 8286 6.672147 ACATGTACTTTTTCAGATTGCTCAC 58.328 36.000 0.00 0.00 0.00 3.51
3382 8287 6.488006 ACATGTACTTTTTCAGATTGCTCACT 59.512 34.615 0.00 0.00 0.00 3.41
3383 8288 6.304356 TGTACTTTTTCAGATTGCTCACTG 57.696 37.500 0.00 0.00 35.72 3.66
3384 8289 4.843220 ACTTTTTCAGATTGCTCACTGG 57.157 40.909 0.00 0.00 35.20 4.00
3385 8290 4.210331 ACTTTTTCAGATTGCTCACTGGT 58.790 39.130 0.00 0.00 35.20 4.00
3386 8291 5.376625 ACTTTTTCAGATTGCTCACTGGTA 58.623 37.500 0.00 0.00 35.20 3.25
3387 8292 6.006449 ACTTTTTCAGATTGCTCACTGGTAT 58.994 36.000 0.00 0.00 35.20 2.73
3388 8293 7.168219 ACTTTTTCAGATTGCTCACTGGTATA 58.832 34.615 0.00 0.00 35.20 1.47
3389 8294 7.665559 ACTTTTTCAGATTGCTCACTGGTATAA 59.334 33.333 0.00 0.00 35.20 0.98
3390 8295 7.615582 TTTTCAGATTGCTCACTGGTATAAG 57.384 36.000 0.00 0.00 35.20 1.73
3391 8296 5.939764 TCAGATTGCTCACTGGTATAAGT 57.060 39.130 0.00 0.00 35.20 2.24
3392 8297 6.299805 TCAGATTGCTCACTGGTATAAGTT 57.700 37.500 0.00 0.00 35.20 2.66
3393 8298 6.108687 TCAGATTGCTCACTGGTATAAGTTG 58.891 40.000 0.00 0.00 35.20 3.16
3394 8299 5.295292 CAGATTGCTCACTGGTATAAGTTGG 59.705 44.000 0.00 0.00 0.00 3.77
3395 8300 2.985896 TGCTCACTGGTATAAGTTGGC 58.014 47.619 0.00 0.00 0.00 4.52
3396 8301 2.304470 TGCTCACTGGTATAAGTTGGCA 59.696 45.455 0.00 0.00 34.65 4.92
3397 8302 3.054434 TGCTCACTGGTATAAGTTGGCAT 60.054 43.478 0.00 0.00 33.15 4.40
3398 8303 3.561725 GCTCACTGGTATAAGTTGGCATC 59.438 47.826 0.00 0.00 0.00 3.91
3399 8304 3.792401 TCACTGGTATAAGTTGGCATCG 58.208 45.455 0.00 0.00 0.00 3.84
3400 8305 3.196901 TCACTGGTATAAGTTGGCATCGT 59.803 43.478 0.00 0.00 0.00 3.73
3401 8306 4.403113 TCACTGGTATAAGTTGGCATCGTA 59.597 41.667 0.00 0.00 0.00 3.43
3402 8307 5.105269 TCACTGGTATAAGTTGGCATCGTAA 60.105 40.000 0.00 0.00 0.00 3.18
3403 8308 5.583061 CACTGGTATAAGTTGGCATCGTAAA 59.417 40.000 0.00 0.00 0.00 2.01
3404 8309 5.583457 ACTGGTATAAGTTGGCATCGTAAAC 59.417 40.000 0.00 0.00 0.00 2.01
3405 8310 4.877251 TGGTATAAGTTGGCATCGTAAACC 59.123 41.667 0.00 0.00 0.00 3.27
3406 8311 5.121105 GGTATAAGTTGGCATCGTAAACCT 58.879 41.667 0.00 0.00 0.00 3.50
3407 8312 6.127111 TGGTATAAGTTGGCATCGTAAACCTA 60.127 38.462 11.65 0.00 0.00 3.08
3408 8313 6.423001 GGTATAAGTTGGCATCGTAAACCTAG 59.577 42.308 0.00 0.00 0.00 3.02
3409 8314 2.629051 AGTTGGCATCGTAAACCTAGC 58.371 47.619 0.00 0.00 0.00 3.42
3410 8315 2.027561 AGTTGGCATCGTAAACCTAGCA 60.028 45.455 0.00 0.00 0.00 3.49
3411 8316 2.745281 GTTGGCATCGTAAACCTAGCAA 59.255 45.455 0.00 0.00 0.00 3.91
3412 8317 3.060736 TGGCATCGTAAACCTAGCAAA 57.939 42.857 0.00 0.00 0.00 3.68
3413 8318 3.413327 TGGCATCGTAAACCTAGCAAAA 58.587 40.909 0.00 0.00 0.00 2.44
3414 8319 3.189702 TGGCATCGTAAACCTAGCAAAAC 59.810 43.478 0.00 0.00 0.00 2.43
3415 8320 3.439129 GGCATCGTAAACCTAGCAAAACT 59.561 43.478 0.00 0.00 0.00 2.66
3416 8321 4.632688 GGCATCGTAAACCTAGCAAAACTA 59.367 41.667 0.00 0.00 0.00 2.24
3417 8322 5.220605 GGCATCGTAAACCTAGCAAAACTAG 60.221 44.000 0.00 0.00 46.95 2.57
3418 8323 5.350640 GCATCGTAAACCTAGCAAAACTAGT 59.649 40.000 0.00 0.00 46.10 2.57
3419 8324 6.532657 GCATCGTAAACCTAGCAAAACTAGTA 59.467 38.462 0.00 0.00 46.10 1.82
3420 8325 7.254017 GCATCGTAAACCTAGCAAAACTAGTAG 60.254 40.741 0.00 0.00 46.10 2.57
3421 8326 7.219484 TCGTAAACCTAGCAAAACTAGTAGT 57.781 36.000 0.00 0.00 46.10 2.73
3422 8327 8.335532 TCGTAAACCTAGCAAAACTAGTAGTA 57.664 34.615 2.50 0.00 46.10 1.82
3423 8328 8.960591 TCGTAAACCTAGCAAAACTAGTAGTAT 58.039 33.333 2.50 0.00 46.10 2.12
3424 8329 9.230932 CGTAAACCTAGCAAAACTAGTAGTATC 57.769 37.037 2.50 0.00 46.10 2.24
3428 8333 9.872721 AACCTAGCAAAACTAGTAGTATCTTTC 57.127 33.333 2.50 0.00 46.10 2.62
3429 8334 9.032624 ACCTAGCAAAACTAGTAGTATCTTTCA 57.967 33.333 2.50 0.00 46.10 2.69
3430 8335 9.522804 CCTAGCAAAACTAGTAGTATCTTTCAG 57.477 37.037 2.50 0.00 46.10 3.02
3431 8336 7.835634 AGCAAAACTAGTAGTATCTTTCAGC 57.164 36.000 2.50 2.40 0.00 4.26
3432 8337 6.531948 AGCAAAACTAGTAGTATCTTTCAGCG 59.468 38.462 2.50 0.00 0.00 5.18
3433 8338 6.530534 GCAAAACTAGTAGTATCTTTCAGCGA 59.469 38.462 2.50 0.00 0.00 4.93
3434 8339 7.253817 GCAAAACTAGTAGTATCTTTCAGCGAG 60.254 40.741 2.50 0.00 0.00 5.03
3435 8340 7.393841 AAACTAGTAGTATCTTTCAGCGAGT 57.606 36.000 2.50 0.00 0.00 4.18
3436 8341 7.393841 AACTAGTAGTATCTTTCAGCGAGTT 57.606 36.000 2.50 0.00 0.00 3.01
3437 8342 7.018635 ACTAGTAGTATCTTTCAGCGAGTTC 57.981 40.000 0.00 0.00 0.00 3.01
3438 8343 5.251601 AGTAGTATCTTTCAGCGAGTTCC 57.748 43.478 0.00 0.00 0.00 3.62
3439 8344 4.705507 AGTAGTATCTTTCAGCGAGTTCCA 59.294 41.667 0.00 0.00 0.00 3.53
3440 8345 4.744795 AGTATCTTTCAGCGAGTTCCAT 57.255 40.909 0.00 0.00 0.00 3.41
3441 8346 4.688021 AGTATCTTTCAGCGAGTTCCATC 58.312 43.478 0.00 0.00 0.00 3.51
3442 8347 3.902881 ATCTTTCAGCGAGTTCCATCT 57.097 42.857 0.00 0.00 0.00 2.90
3443 8348 3.685139 TCTTTCAGCGAGTTCCATCTT 57.315 42.857 0.00 0.00 0.00 2.40
3444 8349 4.801330 TCTTTCAGCGAGTTCCATCTTA 57.199 40.909 0.00 0.00 0.00 2.10
3445 8350 4.748892 TCTTTCAGCGAGTTCCATCTTAG 58.251 43.478 0.00 0.00 0.00 2.18
3446 8351 4.462834 TCTTTCAGCGAGTTCCATCTTAGA 59.537 41.667 0.00 0.00 0.00 2.10
3447 8352 4.801330 TTCAGCGAGTTCCATCTTAGAA 57.199 40.909 0.00 0.00 0.00 2.10
3448 8353 5.344743 TTCAGCGAGTTCCATCTTAGAAT 57.655 39.130 0.00 0.00 0.00 2.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.765036 GTGATGAGCTTCTTGATTCCTGATTA 59.235 38.462 0.00 0.00 0.00 1.75
6 7 3.614092 TGGTGATGAGCTTCTTGATTCC 58.386 45.455 0.00 0.00 0.00 3.01
13 14 1.980765 TGGAGTTGGTGATGAGCTTCT 59.019 47.619 0.00 0.00 0.00 2.85
141 143 9.726034 CGTTGCTTTCACATTTAAATATTCAAC 57.274 29.630 0.00 7.62 0.00 3.18
156 158 4.317348 GCATTTCAAGTTCGTTGCTTTCAC 60.317 41.667 0.00 0.00 35.94 3.18
176 179 3.129813 CACTGCACATATTTCACCAGCAT 59.870 43.478 0.00 0.00 0.00 3.79
179 182 3.346315 TCCACTGCACATATTTCACCAG 58.654 45.455 0.00 0.00 0.00 4.00
196 199 5.886960 AAGCTTGACATGAGTATTTCCAC 57.113 39.130 0.00 0.00 0.00 4.02
198 201 6.500684 TCAAAGCTTGACATGAGTATTTCC 57.499 37.500 0.00 0.00 34.08 3.13
230 234 6.375455 CCCAGTTTCAACTATACTTGCTCAAT 59.625 38.462 0.00 0.00 37.08 2.57
305 309 7.001099 TCGTCTAAAACTTATTTCCCTCTGT 57.999 36.000 0.00 0.00 0.00 3.41
315 323 4.704057 AGTCGACCCTCGTCTAAAACTTAT 59.296 41.667 13.01 0.00 41.35 1.73
377 385 8.954350 TCTAAAACTTACTAGTACAGCTGTAGG 58.046 37.037 26.70 20.04 33.17 3.18
383 391 7.975058 CCTCCTTCTAAAACTTACTAGTACAGC 59.025 40.741 0.91 0.00 33.17 4.40
384 392 9.240734 TCCTCCTTCTAAAACTTACTAGTACAG 57.759 37.037 0.91 6.35 33.17 2.74
385 393 9.765295 ATCCTCCTTCTAAAACTTACTAGTACA 57.235 33.333 0.91 0.00 33.17 2.90
388 396 7.180408 TGCATCCTCCTTCTAAAACTTACTAGT 59.820 37.037 0.00 0.00 35.68 2.57
389 397 7.556844 TGCATCCTCCTTCTAAAACTTACTAG 58.443 38.462 0.00 0.00 0.00 2.57
410 490 9.657419 CCCTTTCATAAAACTTAATTTCTGCAT 57.343 29.630 0.00 0.00 0.00 3.96
412 492 7.819415 AGCCCTTTCATAAAACTTAATTTCTGC 59.181 33.333 0.00 0.00 0.00 4.26
566 687 3.914551 AAGGAGGAGGAGCAGCCGT 62.915 63.158 0.00 0.00 43.43 5.68
568 689 1.223211 GAAAGGAGGAGGAGCAGCC 59.777 63.158 0.00 0.00 0.00 4.85
572 693 0.393673 GCAAGGAAAGGAGGAGGAGC 60.394 60.000 0.00 0.00 0.00 4.70
590 711 2.194326 GAGGAGATTGGCTGGGGC 59.806 66.667 0.00 0.00 37.82 5.80
766 4584 7.148590 CCGGAATTTGATTTCCTGAATGAAAAC 60.149 37.037 0.00 0.00 42.57 2.43
767 4585 6.873076 CCGGAATTTGATTTCCTGAATGAAAA 59.127 34.615 0.00 0.00 42.57 2.29
771 4589 4.114794 GCCGGAATTTGATTTCCTGAATG 58.885 43.478 5.05 0.00 42.57 2.67
810 4631 0.532573 GTGAAGCAGATCCGACCAGA 59.467 55.000 0.00 0.00 0.00 3.86
812 4633 0.904865 AGGTGAAGCAGATCCGACCA 60.905 55.000 0.00 0.00 0.00 4.02
947 4771 1.492133 TTTCCCTCTCCCCTGTGCTG 61.492 60.000 0.00 0.00 0.00 4.41
1093 4942 1.338136 ATCTGGGGTTCGCTGGGTAG 61.338 60.000 0.00 0.00 0.00 3.18
1146 4995 3.187842 CCAATATGCACATGAGGATGTCG 59.812 47.826 7.39 0.00 41.12 4.35
1155 5004 0.032952 GGCTGGCCAATATGCACATG 59.967 55.000 15.79 0.00 35.81 3.21
1167 5016 4.432741 GGGGTCTCAAGGCTGGCC 62.433 72.222 3.00 3.00 0.00 5.36
1431 5280 1.816537 GTGCAGCTCGGACCTATCA 59.183 57.895 0.00 0.00 0.00 2.15
1591 5446 1.027357 GATGGCGTAGGGAAGTCGTA 58.973 55.000 0.00 0.00 0.00 3.43
1592 5447 1.814527 GATGGCGTAGGGAAGTCGT 59.185 57.895 0.00 0.00 0.00 4.34
1593 5448 1.299165 CGATGGCGTAGGGAAGTCG 60.299 63.158 0.00 0.00 0.00 4.18
1594 5449 1.067582 CCGATGGCGTAGGGAAGTC 59.932 63.158 0.00 0.00 35.23 3.01
1595 5450 1.673808 GACCGATGGCGTAGGGAAGT 61.674 60.000 10.75 0.00 35.23 3.01
1596 5451 1.067582 GACCGATGGCGTAGGGAAG 59.932 63.158 10.75 0.00 35.23 3.46
1608 5463 2.171635 GCCAAGCGAAAAGACCGAT 58.828 52.632 0.00 0.00 0.00 4.18
1770 5625 5.898174 ACACAATCTGCATAATCAACATGG 58.102 37.500 0.00 0.00 0.00 3.66
1792 5647 4.681074 AGAGCAGGCTATCCTTAAAGAC 57.319 45.455 0.00 0.00 41.93 3.01
1862 5717 5.978919 AGAACGATCGTTTGTGTTACTACAA 59.021 36.000 32.13 0.00 38.60 2.41
1960 5815 5.126779 AGAGTTTCTTGACCTCCAAACTTC 58.873 41.667 0.00 0.00 38.82 3.01
2078 5933 4.410400 CAGGTTCCAGCCCCGACC 62.410 72.222 0.00 0.00 0.00 4.79
2513 6374 8.950210 CAACAAGGTACAAAGATTGATATCAGT 58.050 33.333 5.39 2.48 32.95 3.41
2514 6375 8.950210 ACAACAAGGTACAAAGATTGATATCAG 58.050 33.333 5.39 0.00 32.95 2.90
2614 6482 4.455877 CCACATAAACACACCTCTCCTTTC 59.544 45.833 0.00 0.00 0.00 2.62
2646 6514 4.213674 CAATGTAAATGATGATGACGCCG 58.786 43.478 0.00 0.00 0.00 6.46
3147 8052 1.511613 TCCCTTCCATCCCTGTCATC 58.488 55.000 0.00 0.00 0.00 2.92
3150 8055 0.475906 CCATCCCTTCCATCCCTGTC 59.524 60.000 0.00 0.00 0.00 3.51
3151 8056 0.046242 TCCATCCCTTCCATCCCTGT 59.954 55.000 0.00 0.00 0.00 4.00
3152 8057 0.769873 CTCCATCCCTTCCATCCCTG 59.230 60.000 0.00 0.00 0.00 4.45
3153 8058 0.402566 CCTCCATCCCTTCCATCCCT 60.403 60.000 0.00 0.00 0.00 4.20
3154 8059 0.699231 ACCTCCATCCCTTCCATCCC 60.699 60.000 0.00 0.00 0.00 3.85
3155 8060 1.700186 GTACCTCCATCCCTTCCATCC 59.300 57.143 0.00 0.00 0.00 3.51
3156 8061 2.695585 AGTACCTCCATCCCTTCCATC 58.304 52.381 0.00 0.00 0.00 3.51
3157 8062 2.897823 AGTACCTCCATCCCTTCCAT 57.102 50.000 0.00 0.00 0.00 3.41
3158 8063 2.225779 TGAAGTACCTCCATCCCTTCCA 60.226 50.000 0.00 0.00 32.47 3.53
3159 8064 2.170817 GTGAAGTACCTCCATCCCTTCC 59.829 54.545 0.00 0.00 32.47 3.46
3160 8065 3.108376 AGTGAAGTACCTCCATCCCTTC 58.892 50.000 0.00 0.00 33.74 3.46
3161 8066 2.840651 CAGTGAAGTACCTCCATCCCTT 59.159 50.000 0.00 0.00 0.00 3.95
3162 8067 2.044492 TCAGTGAAGTACCTCCATCCCT 59.956 50.000 0.00 0.00 0.00 4.20
3163 8068 2.432510 CTCAGTGAAGTACCTCCATCCC 59.567 54.545 0.00 0.00 0.00 3.85
3164 8069 3.100671 ACTCAGTGAAGTACCTCCATCC 58.899 50.000 0.00 0.00 0.00 3.51
3165 8070 4.810191 AACTCAGTGAAGTACCTCCATC 57.190 45.455 0.00 0.00 0.00 3.51
3166 8071 5.308825 CAAAACTCAGTGAAGTACCTCCAT 58.691 41.667 0.00 0.00 0.00 3.41
3167 8072 4.703897 CAAAACTCAGTGAAGTACCTCCA 58.296 43.478 0.00 0.00 0.00 3.86
3168 8073 3.498777 GCAAAACTCAGTGAAGTACCTCC 59.501 47.826 0.00 0.00 0.00 4.30
3169 8074 4.212214 CAGCAAAACTCAGTGAAGTACCTC 59.788 45.833 0.00 0.00 0.00 3.85
3170 8075 4.130118 CAGCAAAACTCAGTGAAGTACCT 58.870 43.478 0.00 0.00 0.00 3.08
3171 8076 3.304057 GCAGCAAAACTCAGTGAAGTACC 60.304 47.826 0.00 0.00 0.00 3.34
3172 8077 3.312421 TGCAGCAAAACTCAGTGAAGTAC 59.688 43.478 0.00 0.00 0.00 2.73
3173 8078 3.540617 TGCAGCAAAACTCAGTGAAGTA 58.459 40.909 0.00 0.00 0.00 2.24
3174 8079 2.368439 TGCAGCAAAACTCAGTGAAGT 58.632 42.857 0.00 0.00 0.00 3.01
3175 8080 3.065786 TCTTGCAGCAAAACTCAGTGAAG 59.934 43.478 9.65 0.00 0.00 3.02
3176 8081 3.016031 TCTTGCAGCAAAACTCAGTGAA 58.984 40.909 9.65 0.00 0.00 3.18
3177 8082 2.642427 TCTTGCAGCAAAACTCAGTGA 58.358 42.857 9.65 0.00 0.00 3.41
3178 8083 3.425577 TTCTTGCAGCAAAACTCAGTG 57.574 42.857 9.65 0.00 0.00 3.66
3179 8084 3.382546 ACATTCTTGCAGCAAAACTCAGT 59.617 39.130 9.65 0.87 0.00 3.41
3180 8085 3.973657 ACATTCTTGCAGCAAAACTCAG 58.026 40.909 9.65 0.00 0.00 3.35
3181 8086 3.380954 TGACATTCTTGCAGCAAAACTCA 59.619 39.130 9.65 8.19 0.00 3.41
3182 8087 3.968649 TGACATTCTTGCAGCAAAACTC 58.031 40.909 9.65 6.11 0.00 3.01
3183 8088 4.595762 ATGACATTCTTGCAGCAAAACT 57.404 36.364 9.65 0.00 0.00 2.66
3184 8089 6.956299 AATATGACATTCTTGCAGCAAAAC 57.044 33.333 9.65 0.00 0.00 2.43
3185 8090 7.153315 TCAAATATGACATTCTTGCAGCAAAA 58.847 30.769 9.65 7.19 0.00 2.44
3186 8091 6.689554 TCAAATATGACATTCTTGCAGCAAA 58.310 32.000 9.65 0.00 0.00 3.68
3187 8092 6.270156 TCAAATATGACATTCTTGCAGCAA 57.730 33.333 7.81 7.81 0.00 3.91
3188 8093 5.900865 TCAAATATGACATTCTTGCAGCA 57.099 34.783 0.00 0.00 0.00 4.41
3204 8109 9.764363 CTGTCACCTAGCTTGTTATATCAAATA 57.236 33.333 0.00 0.00 0.00 1.40
3205 8110 8.267894 ACTGTCACCTAGCTTGTTATATCAAAT 58.732 33.333 0.00 0.00 0.00 2.32
3206 8111 7.549134 CACTGTCACCTAGCTTGTTATATCAAA 59.451 37.037 0.00 0.00 0.00 2.69
3207 8112 7.041721 CACTGTCACCTAGCTTGTTATATCAA 58.958 38.462 0.00 0.00 0.00 2.57
3208 8113 6.406961 CCACTGTCACCTAGCTTGTTATATCA 60.407 42.308 0.00 0.00 0.00 2.15
3209 8114 5.986135 CCACTGTCACCTAGCTTGTTATATC 59.014 44.000 0.00 0.00 0.00 1.63
3210 8115 5.163301 CCCACTGTCACCTAGCTTGTTATAT 60.163 44.000 0.00 0.00 0.00 0.86
3211 8116 4.161565 CCCACTGTCACCTAGCTTGTTATA 59.838 45.833 0.00 0.00 0.00 0.98
3212 8117 3.055094 CCCACTGTCACCTAGCTTGTTAT 60.055 47.826 0.00 0.00 0.00 1.89
3213 8118 2.301870 CCCACTGTCACCTAGCTTGTTA 59.698 50.000 0.00 0.00 0.00 2.41
3214 8119 1.072331 CCCACTGTCACCTAGCTTGTT 59.928 52.381 0.00 0.00 0.00 2.83
3215 8120 0.687354 CCCACTGTCACCTAGCTTGT 59.313 55.000 0.00 0.00 0.00 3.16
3216 8121 0.976641 TCCCACTGTCACCTAGCTTG 59.023 55.000 0.00 0.00 0.00 4.01
3217 8122 1.958288 ATCCCACTGTCACCTAGCTT 58.042 50.000 0.00 0.00 0.00 3.74
3218 8123 1.834263 GAATCCCACTGTCACCTAGCT 59.166 52.381 0.00 0.00 0.00 3.32
3219 8124 1.134371 GGAATCCCACTGTCACCTAGC 60.134 57.143 0.00 0.00 0.00 3.42
3220 8125 1.486726 GGGAATCCCACTGTCACCTAG 59.513 57.143 14.67 0.00 44.65 3.02
3221 8126 1.580059 GGGAATCCCACTGTCACCTA 58.420 55.000 14.67 0.00 44.65 3.08
3222 8127 2.387952 GGGAATCCCACTGTCACCT 58.612 57.895 14.67 0.00 44.65 4.00
3232 8137 4.251103 AGTATCAAAACCTGGGAATCCC 57.749 45.455 12.39 12.39 45.71 3.85
3233 8138 5.751586 TGTAGTATCAAAACCTGGGAATCC 58.248 41.667 0.00 0.00 0.00 3.01
3234 8139 6.650120 TCTGTAGTATCAAAACCTGGGAATC 58.350 40.000 0.00 0.00 0.00 2.52
3235 8140 6.636454 TCTGTAGTATCAAAACCTGGGAAT 57.364 37.500 0.00 0.00 0.00 3.01
3236 8141 6.442541 TTCTGTAGTATCAAAACCTGGGAA 57.557 37.500 0.00 0.00 0.00 3.97
3237 8142 6.442541 TTTCTGTAGTATCAAAACCTGGGA 57.557 37.500 0.00 0.00 0.00 4.37
3238 8143 6.659242 ACATTTCTGTAGTATCAAAACCTGGG 59.341 38.462 0.00 0.00 32.49 4.45
3239 8144 7.390440 TGACATTTCTGTAGTATCAAAACCTGG 59.610 37.037 0.00 0.00 35.14 4.45
3240 8145 8.322906 TGACATTTCTGTAGTATCAAAACCTG 57.677 34.615 0.00 0.00 35.14 4.00
3251 8156 8.739972 GGAAAACCATTATGACATTTCTGTAGT 58.260 33.333 12.98 0.00 35.14 2.73
3252 8157 8.739039 TGGAAAACCATTATGACATTTCTGTAG 58.261 33.333 12.98 0.00 35.14 2.74
3253 8158 8.642935 TGGAAAACCATTATGACATTTCTGTA 57.357 30.769 12.98 3.54 35.14 2.74
3254 8159 7.309990 CCTGGAAAACCATTATGACATTTCTGT 60.310 37.037 12.98 0.00 38.67 3.41
3255 8160 7.037438 CCTGGAAAACCATTATGACATTTCTG 58.963 38.462 12.98 8.79 0.00 3.02
3256 8161 6.953520 TCCTGGAAAACCATTATGACATTTCT 59.046 34.615 0.00 0.00 0.00 2.52
3257 8162 7.169158 TCCTGGAAAACCATTATGACATTTC 57.831 36.000 0.00 1.89 0.00 2.17
3258 8163 7.364939 CCATCCTGGAAAACCATTATGACATTT 60.365 37.037 0.00 0.00 40.96 2.32
3259 8164 6.098695 CCATCCTGGAAAACCATTATGACATT 59.901 38.462 0.00 0.00 40.96 2.71
3260 8165 5.599656 CCATCCTGGAAAACCATTATGACAT 59.400 40.000 0.00 0.00 40.96 3.06
3261 8166 4.955450 CCATCCTGGAAAACCATTATGACA 59.045 41.667 0.00 0.00 40.96 3.58
3262 8167 4.956075 ACCATCCTGGAAAACCATTATGAC 59.044 41.667 0.00 0.00 40.96 3.06
3263 8168 5.205517 ACCATCCTGGAAAACCATTATGA 57.794 39.130 0.00 0.00 40.96 2.15
3264 8169 6.607198 AGTTACCATCCTGGAAAACCATTATG 59.393 38.462 0.00 0.00 40.96 1.90
3265 8170 6.741724 AGTTACCATCCTGGAAAACCATTAT 58.258 36.000 0.00 0.00 40.96 1.28
3266 8171 6.147437 AGTTACCATCCTGGAAAACCATTA 57.853 37.500 0.00 0.00 40.96 1.90
3267 8172 5.010708 AGTTACCATCCTGGAAAACCATT 57.989 39.130 0.00 0.00 40.96 3.16
3268 8173 4.675063 AGTTACCATCCTGGAAAACCAT 57.325 40.909 0.00 0.00 40.96 3.55
3269 8174 4.463050 AAGTTACCATCCTGGAAAACCA 57.537 40.909 0.00 0.00 40.96 3.67
3270 8175 5.567430 ACTAAGTTACCATCCTGGAAAACC 58.433 41.667 0.00 0.00 40.96 3.27
3271 8176 6.473758 AGACTAAGTTACCATCCTGGAAAAC 58.526 40.000 0.00 3.65 40.96 2.43
3272 8177 6.271391 TGAGACTAAGTTACCATCCTGGAAAA 59.729 38.462 0.00 0.00 40.96 2.29
3273 8178 5.783360 TGAGACTAAGTTACCATCCTGGAAA 59.217 40.000 0.00 0.00 40.96 3.13
3274 8179 5.338632 TGAGACTAAGTTACCATCCTGGAA 58.661 41.667 0.00 0.00 40.96 3.53
3275 8180 4.942944 TGAGACTAAGTTACCATCCTGGA 58.057 43.478 0.00 0.00 40.96 3.86
3276 8181 5.453903 CCATGAGACTAAGTTACCATCCTGG 60.454 48.000 0.00 0.00 45.02 4.45
3277 8182 5.363868 TCCATGAGACTAAGTTACCATCCTG 59.636 44.000 0.00 0.00 0.00 3.86
3278 8183 5.529289 TCCATGAGACTAAGTTACCATCCT 58.471 41.667 0.00 0.00 0.00 3.24
3279 8184 5.871396 TCCATGAGACTAAGTTACCATCC 57.129 43.478 0.00 0.00 0.00 3.51
3280 8185 6.879400 AGTTCCATGAGACTAAGTTACCATC 58.121 40.000 0.00 0.00 0.00 3.51
3281 8186 6.875972 AGTTCCATGAGACTAAGTTACCAT 57.124 37.500 0.00 0.00 0.00 3.55
3282 8187 6.952358 ACTAGTTCCATGAGACTAAGTTACCA 59.048 38.462 0.00 0.00 0.00 3.25
3283 8188 7.093858 ACACTAGTTCCATGAGACTAAGTTACC 60.094 40.741 0.00 0.00 0.00 2.85
3284 8189 7.828712 ACACTAGTTCCATGAGACTAAGTTAC 58.171 38.462 0.00 0.00 0.00 2.50
3285 8190 9.524496 TTACACTAGTTCCATGAGACTAAGTTA 57.476 33.333 0.00 0.00 0.00 2.24
3286 8191 6.919775 ACACTAGTTCCATGAGACTAAGTT 57.080 37.500 0.00 0.00 0.00 2.66
3287 8192 8.418597 TTTACACTAGTTCCATGAGACTAAGT 57.581 34.615 0.00 6.41 0.00 2.24
3288 8193 9.522804 GATTTACACTAGTTCCATGAGACTAAG 57.477 37.037 0.00 1.01 0.00 2.18
3289 8194 9.031537 TGATTTACACTAGTTCCATGAGACTAA 57.968 33.333 0.00 0.00 0.00 2.24
3290 8195 8.589701 TGATTTACACTAGTTCCATGAGACTA 57.410 34.615 0.00 1.10 0.00 2.59
3291 8196 7.482169 TGATTTACACTAGTTCCATGAGACT 57.518 36.000 0.00 0.00 0.00 3.24
3292 8197 8.547967 TTTGATTTACACTAGTTCCATGAGAC 57.452 34.615 0.00 0.00 0.00 3.36
3293 8198 8.593679 TCTTTGATTTACACTAGTTCCATGAGA 58.406 33.333 0.00 0.00 0.00 3.27
3294 8199 8.777865 TCTTTGATTTACACTAGTTCCATGAG 57.222 34.615 0.00 0.00 0.00 2.90
3295 8200 8.593679 TCTCTTTGATTTACACTAGTTCCATGA 58.406 33.333 0.00 0.00 0.00 3.07
3296 8201 8.777865 TCTCTTTGATTTACACTAGTTCCATG 57.222 34.615 0.00 0.00 0.00 3.66
3297 8202 9.220767 GTTCTCTTTGATTTACACTAGTTCCAT 57.779 33.333 0.00 0.00 0.00 3.41
3298 8203 8.208224 TGTTCTCTTTGATTTACACTAGTTCCA 58.792 33.333 0.00 0.00 0.00 3.53
3299 8204 8.603242 TGTTCTCTTTGATTTACACTAGTTCC 57.397 34.615 0.00 0.00 0.00 3.62
3300 8205 9.262358 ACTGTTCTCTTTGATTTACACTAGTTC 57.738 33.333 0.00 0.00 0.00 3.01
3301 8206 9.614792 AACTGTTCTCTTTGATTTACACTAGTT 57.385 29.630 0.00 0.00 0.00 2.24
3304 8209 9.485206 GGTAACTGTTCTCTTTGATTTACACTA 57.515 33.333 0.00 0.00 0.00 2.74
3305 8210 8.379457 GGTAACTGTTCTCTTTGATTTACACT 57.621 34.615 0.00 0.00 0.00 3.55
3322 8227 8.594550 AGTTGATGACTGTAAATAGGTAACTGT 58.405 33.333 0.00 0.00 42.74 3.55
3323 8228 9.088512 GAGTTGATGACTGTAAATAGGTAACTG 57.911 37.037 0.00 0.00 43.95 3.16
3324 8229 8.812972 TGAGTTGATGACTGTAAATAGGTAACT 58.187 33.333 0.00 0.00 45.64 2.24
3325 8230 8.997621 TGAGTTGATGACTGTAAATAGGTAAC 57.002 34.615 0.00 0.00 39.19 2.50
3326 8231 9.817809 GATGAGTTGATGACTGTAAATAGGTAA 57.182 33.333 0.00 0.00 39.19 2.85
3327 8232 8.977412 TGATGAGTTGATGACTGTAAATAGGTA 58.023 33.333 0.00 0.00 39.19 3.08
3328 8233 7.851228 TGATGAGTTGATGACTGTAAATAGGT 58.149 34.615 0.00 0.00 39.19 3.08
3329 8234 8.771766 CATGATGAGTTGATGACTGTAAATAGG 58.228 37.037 0.00 0.00 39.19 2.57
3330 8235 9.322773 ACATGATGAGTTGATGACTGTAAATAG 57.677 33.333 0.00 0.00 39.19 1.73
3332 8237 9.102757 GTACATGATGAGTTGATGACTGTAAAT 57.897 33.333 0.00 0.00 39.19 1.40
3333 8238 8.093927 TGTACATGATGAGTTGATGACTGTAAA 58.906 33.333 0.00 0.00 39.19 2.01
3334 8239 7.610865 TGTACATGATGAGTTGATGACTGTAA 58.389 34.615 0.00 0.00 39.19 2.41
3335 8240 7.169158 TGTACATGATGAGTTGATGACTGTA 57.831 36.000 0.00 0.00 39.19 2.74
3336 8241 6.041423 TGTACATGATGAGTTGATGACTGT 57.959 37.500 0.00 0.00 39.19 3.55
3337 8242 6.537660 ACATGTACATGATGAGTTGATGACTG 59.462 38.462 36.36 10.72 41.20 3.51
3338 8243 6.647229 ACATGTACATGATGAGTTGATGACT 58.353 36.000 36.36 10.85 41.20 3.41
3339 8244 6.915544 ACATGTACATGATGAGTTGATGAC 57.084 37.500 36.36 0.00 41.20 3.06
3340 8245 7.785033 AGTACATGTACATGATGAGTTGATGA 58.215 34.615 36.36 8.42 41.20 2.92
3341 8246 8.429493 AAGTACATGTACATGATGAGTTGATG 57.571 34.615 36.36 12.32 41.20 3.07
3342 8247 9.453572 AAAAGTACATGTACATGATGAGTTGAT 57.546 29.630 36.36 16.77 41.20 2.57
3343 8248 8.846943 AAAAGTACATGTACATGATGAGTTGA 57.153 30.769 36.36 11.94 41.20 3.18
3344 8249 9.546909 GAAAAAGTACATGTACATGATGAGTTG 57.453 33.333 36.36 14.23 41.20 3.16
3345 8250 9.283768 TGAAAAAGTACATGTACATGATGAGTT 57.716 29.630 36.36 25.18 41.20 3.01
3346 8251 8.846943 TGAAAAAGTACATGTACATGATGAGT 57.153 30.769 36.36 21.81 41.20 3.41
3347 8252 9.154847 TCTGAAAAAGTACATGTACATGATGAG 57.845 33.333 36.36 21.12 41.20 2.90
3348 8253 9.671279 ATCTGAAAAAGTACATGTACATGATGA 57.329 29.630 36.36 20.49 41.20 2.92
3351 8256 8.236586 GCAATCTGAAAAAGTACATGTACATGA 58.763 33.333 36.36 20.00 41.20 3.07
3352 8257 8.239314 AGCAATCTGAAAAAGTACATGTACATG 58.761 33.333 32.02 29.97 44.15 3.21
3353 8258 8.340618 AGCAATCTGAAAAAGTACATGTACAT 57.659 30.769 32.02 21.32 38.48 2.29
3354 8259 7.443879 TGAGCAATCTGAAAAAGTACATGTACA 59.556 33.333 32.02 13.55 38.48 2.90
3355 8260 7.746475 GTGAGCAATCTGAAAAAGTACATGTAC 59.254 37.037 25.51 25.51 36.35 2.90
3356 8261 7.661437 AGTGAGCAATCTGAAAAAGTACATGTA 59.339 33.333 0.08 0.08 0.00 2.29
3357 8262 6.488006 AGTGAGCAATCTGAAAAAGTACATGT 59.512 34.615 2.69 2.69 0.00 3.21
3358 8263 6.800408 CAGTGAGCAATCTGAAAAAGTACATG 59.200 38.462 0.00 0.00 34.02 3.21
3359 8264 6.072286 CCAGTGAGCAATCTGAAAAAGTACAT 60.072 38.462 0.00 0.00 34.02 2.29
3360 8265 5.239306 CCAGTGAGCAATCTGAAAAAGTACA 59.761 40.000 0.00 0.00 34.02 2.90
3361 8266 5.239525 ACCAGTGAGCAATCTGAAAAAGTAC 59.760 40.000 0.00 0.00 34.02 2.73
3362 8267 5.376625 ACCAGTGAGCAATCTGAAAAAGTA 58.623 37.500 0.00 0.00 34.02 2.24
3363 8268 4.210331 ACCAGTGAGCAATCTGAAAAAGT 58.790 39.130 0.00 0.00 34.02 2.66
3364 8269 4.843220 ACCAGTGAGCAATCTGAAAAAG 57.157 40.909 0.00 0.00 34.02 2.27
3365 8270 7.665559 ACTTATACCAGTGAGCAATCTGAAAAA 59.334 33.333 0.00 0.00 34.02 1.94
3366 8271 7.168219 ACTTATACCAGTGAGCAATCTGAAAA 58.832 34.615 0.00 0.00 34.02 2.29
3367 8272 6.711277 ACTTATACCAGTGAGCAATCTGAAA 58.289 36.000 0.00 0.00 34.02 2.69
3368 8273 6.299805 ACTTATACCAGTGAGCAATCTGAA 57.700 37.500 0.00 0.00 34.02 3.02
3369 8274 5.939764 ACTTATACCAGTGAGCAATCTGA 57.060 39.130 0.00 0.00 34.02 3.27
3370 8275 5.295292 CCAACTTATACCAGTGAGCAATCTG 59.705 44.000 0.00 0.00 0.00 2.90
3371 8276 5.431765 CCAACTTATACCAGTGAGCAATCT 58.568 41.667 0.00 0.00 0.00 2.40
3372 8277 4.035675 GCCAACTTATACCAGTGAGCAATC 59.964 45.833 0.00 0.00 0.00 2.67
3373 8278 3.947834 GCCAACTTATACCAGTGAGCAAT 59.052 43.478 0.00 0.00 0.00 3.56
3374 8279 3.244735 TGCCAACTTATACCAGTGAGCAA 60.245 43.478 0.00 0.00 34.37 3.91
3375 8280 2.304470 TGCCAACTTATACCAGTGAGCA 59.696 45.455 0.00 0.00 34.72 4.26
3376 8281 2.985896 TGCCAACTTATACCAGTGAGC 58.014 47.619 0.00 0.00 0.00 4.26
3377 8282 3.804325 CGATGCCAACTTATACCAGTGAG 59.196 47.826 0.00 0.00 0.00 3.51
3378 8283 3.196901 ACGATGCCAACTTATACCAGTGA 59.803 43.478 0.00 0.00 0.00 3.41
3379 8284 3.531538 ACGATGCCAACTTATACCAGTG 58.468 45.455 0.00 0.00 0.00 3.66
3380 8285 3.906720 ACGATGCCAACTTATACCAGT 57.093 42.857 0.00 0.00 0.00 4.00
3381 8286 5.007332 GGTTTACGATGCCAACTTATACCAG 59.993 44.000 0.00 0.00 0.00 4.00
3382 8287 4.877251 GGTTTACGATGCCAACTTATACCA 59.123 41.667 0.00 0.00 0.00 3.25
3383 8288 5.121105 AGGTTTACGATGCCAACTTATACC 58.879 41.667 0.00 0.00 0.00 2.73
3384 8289 6.073927 GCTAGGTTTACGATGCCAACTTATAC 60.074 42.308 0.00 0.00 0.00 1.47
3385 8290 5.987347 GCTAGGTTTACGATGCCAACTTATA 59.013 40.000 0.00 0.00 0.00 0.98
3386 8291 4.814771 GCTAGGTTTACGATGCCAACTTAT 59.185 41.667 0.00 0.00 0.00 1.73
3387 8292 4.186159 GCTAGGTTTACGATGCCAACTTA 58.814 43.478 0.00 0.00 0.00 2.24
3388 8293 3.007635 GCTAGGTTTACGATGCCAACTT 58.992 45.455 0.00 0.00 0.00 2.66
3389 8294 2.027561 TGCTAGGTTTACGATGCCAACT 60.028 45.455 0.00 0.00 0.00 3.16
3390 8295 2.352388 TGCTAGGTTTACGATGCCAAC 58.648 47.619 0.00 0.00 0.00 3.77
3391 8296 2.772077 TGCTAGGTTTACGATGCCAA 57.228 45.000 0.00 0.00 0.00 4.52
3392 8297 2.772077 TTGCTAGGTTTACGATGCCA 57.228 45.000 0.00 0.00 0.00 4.92
3393 8298 3.439129 AGTTTTGCTAGGTTTACGATGCC 59.561 43.478 0.00 0.00 0.00 4.40
3394 8299 4.680171 AGTTTTGCTAGGTTTACGATGC 57.320 40.909 0.00 0.00 0.00 3.91
3404 8309 9.522804 CTGAAAGATACTACTAGTTTTGCTAGG 57.477 37.037 0.00 0.00 43.90 3.02
3405 8310 9.026074 GCTGAAAGATACTACTAGTTTTGCTAG 57.974 37.037 0.00 0.00 44.65 3.42
3406 8311 7.701078 CGCTGAAAGATACTACTAGTTTTGCTA 59.299 37.037 0.00 0.00 34.07 3.49
3407 8312 6.531948 CGCTGAAAGATACTACTAGTTTTGCT 59.468 38.462 0.00 0.00 34.07 3.91
3408 8313 6.530534 TCGCTGAAAGATACTACTAGTTTTGC 59.469 38.462 0.00 0.00 34.07 3.68
3409 8314 7.755822 ACTCGCTGAAAGATACTACTAGTTTTG 59.244 37.037 0.00 0.00 34.07 2.44
3410 8315 7.828712 ACTCGCTGAAAGATACTACTAGTTTT 58.171 34.615 0.00 0.00 34.07 2.43
3411 8316 7.393841 ACTCGCTGAAAGATACTACTAGTTT 57.606 36.000 0.00 0.00 34.07 2.66
3412 8317 7.393841 AACTCGCTGAAAGATACTACTAGTT 57.606 36.000 0.00 0.00 34.07 2.24
3413 8318 6.038492 GGAACTCGCTGAAAGATACTACTAGT 59.962 42.308 0.00 0.00 34.07 2.57
3414 8319 6.038382 TGGAACTCGCTGAAAGATACTACTAG 59.962 42.308 0.00 0.00 34.07 2.57
3415 8320 5.884232 TGGAACTCGCTGAAAGATACTACTA 59.116 40.000 0.00 0.00 34.07 1.82
3416 8321 4.705507 TGGAACTCGCTGAAAGATACTACT 59.294 41.667 0.00 0.00 34.07 2.57
3417 8322 4.995124 TGGAACTCGCTGAAAGATACTAC 58.005 43.478 0.00 0.00 34.07 2.73
3418 8323 5.594725 AGATGGAACTCGCTGAAAGATACTA 59.405 40.000 0.00 0.00 34.07 1.82
3419 8324 4.404073 AGATGGAACTCGCTGAAAGATACT 59.596 41.667 0.00 0.00 34.07 2.12
3420 8325 4.688021 AGATGGAACTCGCTGAAAGATAC 58.312 43.478 0.00 0.00 34.07 2.24
3421 8326 5.344743 AAGATGGAACTCGCTGAAAGATA 57.655 39.130 0.00 0.00 34.07 1.98
3422 8327 3.902881 AGATGGAACTCGCTGAAAGAT 57.097 42.857 0.00 0.00 34.07 2.40
3423 8328 3.685139 AAGATGGAACTCGCTGAAAGA 57.315 42.857 0.00 0.00 34.07 2.52
3424 8329 4.748892 TCTAAGATGGAACTCGCTGAAAG 58.251 43.478 0.00 0.00 0.00 2.62
3425 8330 4.801330 TCTAAGATGGAACTCGCTGAAA 57.199 40.909 0.00 0.00 0.00 2.69
3426 8331 4.801330 TTCTAAGATGGAACTCGCTGAA 57.199 40.909 0.00 0.00 0.00 3.02
3427 8332 5.344743 AATTCTAAGATGGAACTCGCTGA 57.655 39.130 0.00 0.00 0.00 4.26
3428 8333 6.535150 TGTAAATTCTAAGATGGAACTCGCTG 59.465 38.462 0.00 0.00 0.00 5.18
3429 8334 6.535508 GTGTAAATTCTAAGATGGAACTCGCT 59.464 38.462 0.00 0.00 0.00 4.93
3430 8335 6.238130 GGTGTAAATTCTAAGATGGAACTCGC 60.238 42.308 0.00 0.00 0.00 5.03
3431 8336 6.816640 TGGTGTAAATTCTAAGATGGAACTCG 59.183 38.462 0.00 0.00 0.00 4.18
3432 8337 7.606456 TGTGGTGTAAATTCTAAGATGGAACTC 59.394 37.037 0.00 0.00 0.00 3.01
3433 8338 7.458397 TGTGGTGTAAATTCTAAGATGGAACT 58.542 34.615 0.00 0.00 0.00 3.01
3434 8339 7.606456 TCTGTGGTGTAAATTCTAAGATGGAAC 59.394 37.037 0.00 0.00 0.00 3.62
3435 8340 7.685481 TCTGTGGTGTAAATTCTAAGATGGAA 58.315 34.615 0.00 0.00 0.00 3.53
3436 8341 7.252612 TCTGTGGTGTAAATTCTAAGATGGA 57.747 36.000 0.00 0.00 0.00 3.41
3437 8342 7.989741 AGATCTGTGGTGTAAATTCTAAGATGG 59.010 37.037 0.00 0.00 0.00 3.51
3438 8343 8.954950 AGATCTGTGGTGTAAATTCTAAGATG 57.045 34.615 0.00 0.00 0.00 2.90
3439 8344 8.762645 TGAGATCTGTGGTGTAAATTCTAAGAT 58.237 33.333 0.00 0.00 0.00 2.40
3440 8345 8.134202 TGAGATCTGTGGTGTAAATTCTAAGA 57.866 34.615 0.00 0.00 0.00 2.10
3441 8346 8.253810 TCTGAGATCTGTGGTGTAAATTCTAAG 58.746 37.037 0.00 0.00 0.00 2.18
3442 8347 8.134202 TCTGAGATCTGTGGTGTAAATTCTAA 57.866 34.615 0.00 0.00 0.00 2.10
3443 8348 7.718334 TCTGAGATCTGTGGTGTAAATTCTA 57.282 36.000 0.00 0.00 0.00 2.10
3444 8349 6.611613 TCTGAGATCTGTGGTGTAAATTCT 57.388 37.500 0.00 0.00 0.00 2.40
3445 8350 7.856145 ATTCTGAGATCTGTGGTGTAAATTC 57.144 36.000 0.00 0.00 0.00 2.17
3446 8351 8.517878 CAAATTCTGAGATCTGTGGTGTAAATT 58.482 33.333 0.00 0.00 0.00 1.82
3447 8352 7.884877 TCAAATTCTGAGATCTGTGGTGTAAAT 59.115 33.333 0.00 0.00 0.00 1.40
3448 8353 7.223584 TCAAATTCTGAGATCTGTGGTGTAAA 58.776 34.615 0.00 0.00 0.00 2.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.