Multiple sequence alignment - TraesCS7D01G146600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G146600 chr7D 100.000 4679 0 0 1 4679 93784516 93789194 0.000000e+00 8641.0
1 TraesCS7D01G146600 chr7D 82.639 144 23 2 4270 4412 606638404 606638262 4.920000e-25 126.0
2 TraesCS7D01G146600 chr7A 95.060 1822 78 9 1868 3679 96563899 96565718 0.000000e+00 2856.0
3 TraesCS7D01G146600 chr7A 91.232 901 38 13 911 1789 96562880 96563761 0.000000e+00 1188.0
4 TraesCS7D01G146600 chr7A 92.098 696 18 16 3999 4679 96567357 96568030 0.000000e+00 946.0
5 TraesCS7D01G146600 chr7A 93.537 294 14 3 3715 4003 96566230 96566523 2.590000e-117 433.0
6 TraesCS7D01G146600 chr7A 94.977 219 6 4 1 217 96560080 96560295 5.800000e-89 339.0
7 TraesCS7D01G146600 chr7A 89.922 129 9 4 219 346 96560499 96560624 3.750000e-36 163.0
8 TraesCS7D01G146600 chr7A 83.333 144 22 2 4270 4412 698677123 698677265 1.060000e-26 132.0
9 TraesCS7D01G146600 chr7A 85.714 84 8 2 756 835 96562269 96562352 8.340000e-13 86.1
10 TraesCS7D01G146600 chr7B 93.137 1938 82 17 2716 4618 46999159 47001080 0.000000e+00 2795.0
11 TraesCS7D01G146600 chr7B 91.319 887 40 14 919 1779 46997440 46998315 0.000000e+00 1177.0
12 TraesCS7D01G146600 chr7B 88.256 843 62 17 1 834 46996444 46997258 0.000000e+00 974.0
13 TraesCS7D01G146600 chr7B 90.177 621 53 6 1847 2460 46998321 46998940 0.000000e+00 802.0
14 TraesCS7D01G146600 chr7B 83.951 162 21 4 4246 4405 690752632 690752790 2.920000e-32 150.0
15 TraesCS7D01G146600 chr7B 97.727 44 1 0 4636 4679 47001123 47001166 5.020000e-10 76.8
16 TraesCS7D01G146600 chr6D 80.000 290 44 8 4269 4545 443846995 443847283 7.940000e-48 202.0
17 TraesCS7D01G146600 chr6A 78.893 289 49 8 4269 4545 591437049 591437337 8.000000e-43 185.0
18 TraesCS7D01G146600 chr6A 77.241 290 52 8 4269 4545 591436032 591436320 1.740000e-34 158.0
19 TraesCS7D01G146600 chr6A 89.691 97 10 0 1788 1884 222554905 222555001 1.770000e-24 124.0
20 TraesCS7D01G146600 chr6A 91.954 87 5 1 3924 4010 190660436 190660352 2.290000e-23 121.0
21 TraesCS7D01G146600 chr6A 91.954 87 5 1 3924 4010 190738359 190738275 2.290000e-23 121.0
22 TraesCS7D01G146600 chr6B 78.746 287 49 8 4269 4543 668247617 668247903 1.030000e-41 182.0
23 TraesCS7D01G146600 chr6B 84.426 122 17 2 1783 1903 207926363 207926483 8.220000e-23 119.0
24 TraesCS7D01G146600 chr4B 99.010 101 1 0 2713 2813 77297392 77297492 1.030000e-41 182.0
25 TraesCS7D01G146600 chr1A 93.684 95 6 0 1793 1887 104946153 104946059 4.880000e-30 143.0
26 TraesCS7D01G146600 chr1A 87.500 120 8 6 1793 1908 334203618 334203734 1.060000e-26 132.0
27 TraesCS7D01G146600 chr1A 89.583 96 8 1 3915 4010 518662856 518662763 2.290000e-23 121.0
28 TraesCS7D01G146600 chr2D 92.784 97 6 1 1788 1883 340262176 340262080 6.310000e-29 139.0
29 TraesCS7D01G146600 chr1D 93.478 92 6 0 1793 1884 100458996 100459087 2.270000e-28 137.0
30 TraesCS7D01G146600 chr1D 92.857 84 6 0 3927 4010 489299983 489300066 6.360000e-24 122.0
31 TraesCS7D01G146600 chr1D 92.857 84 6 0 3927 4010 489432871 489432954 6.360000e-24 122.0
32 TraesCS7D01G146600 chr1B 91.579 95 8 0 1793 1887 151093169 151093075 1.060000e-26 132.0
33 TraesCS7D01G146600 chr3B 88.679 106 10 2 1791 1894 8054759 8054654 1.370000e-25 128.0
34 TraesCS7D01G146600 chr3B 91.111 90 7 1 3922 4010 429973520 429973609 2.290000e-23 121.0
35 TraesCS7D01G146600 chr5B 89.691 97 10 0 1788 1884 364132672 364132768 1.770000e-24 124.0
36 TraesCS7D01G146600 chr2B 88.542 96 9 2 3922 4017 483453041 483452948 1.060000e-21 115.0
37 TraesCS7D01G146600 chr5D 84.158 101 8 3 2092 2192 86759659 86759567 1.790000e-14 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G146600 chr7D 93784516 93789194 4678 False 8641.000000 8641 100.000000 1 4679 1 chr7D.!!$F1 4678
1 TraesCS7D01G146600 chr7A 96560080 96568030 7950 False 858.728571 2856 91.791429 1 4679 7 chr7A.!!$F2 4678
2 TraesCS7D01G146600 chr7B 46996444 47001166 4722 False 1164.960000 2795 92.123200 1 4679 5 chr7B.!!$F2 4678

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
740 2424 0.391228 GCGCCTTCCCCTTTTTCAAA 59.609 50.0 0.00 0.00 0.00 2.69 F
1503 3802 0.395311 TTCTCCATCCGTACTCGCCT 60.395 55.0 0.00 0.00 35.54 5.52 F
1748 4052 0.316841 GTCGAGATGATGAGGCCCTC 59.683 60.0 2.98 2.98 0.00 4.30 F
1990 4359 0.735632 CGACAGAGAAGGCTGCTGAC 60.736 60.0 0.00 2.28 39.51 3.51 F
2849 5248 0.933097 CTGAATTCCGACTGCCATCG 59.067 55.0 2.27 0.00 41.89 3.84 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1726 4030 0.033228 GGCCTCATCATCTCGACTGG 59.967 60.000 0.00 0.0 0.00 4.00 R
3078 5479 0.327259 AGCAGCTCTTCCATTGCAGA 59.673 50.000 0.00 0.0 38.97 4.26 R
3246 5647 1.741770 CGACTAGCCAAAAGGCGCT 60.742 57.895 7.64 0.0 38.90 5.92 R
3353 5754 2.290514 CCAGCAGGTGAATTCAGAAGGA 60.291 50.000 8.80 0.0 0.00 3.36 R
4303 8057 0.543277 TCAAGCAGAAGGGCATCGAT 59.457 50.000 0.00 0.0 35.83 3.59 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
88 90 3.519510 TGGACTTGAAGGATAAGTGGAGG 59.480 47.826 0.00 0.00 38.42 4.30
96 98 4.762289 AGGATAAGTGGAGGAACATGAC 57.238 45.455 0.00 0.00 0.00 3.06
120 122 6.038825 ACGAGATAGTGGAGAGACATACTTTG 59.961 42.308 0.00 0.00 0.00 2.77
173 175 3.767673 TCTTTTACCGATGGAGTAGCTGT 59.232 43.478 0.00 0.00 0.00 4.40
227 431 3.746940 AGAAGCTTACTAACGGGCAAAA 58.253 40.909 0.00 0.00 0.00 2.44
260 464 8.035984 GGATGCTATTATAGGTGTAAAGTCTCC 58.964 40.741 1.12 0.00 0.00 3.71
267 471 1.675116 GGTGTAAAGTCTCCCTTCGGC 60.675 57.143 0.00 0.00 31.27 5.54
269 473 1.275291 TGTAAAGTCTCCCTTCGGCAG 59.725 52.381 0.00 0.00 31.27 4.85
310 514 4.695217 TTCTGGTTGTTGTTGAAGTGTC 57.305 40.909 0.00 0.00 0.00 3.67
313 517 2.160615 TGGTTGTTGTTGAAGTGTCGTG 59.839 45.455 0.00 0.00 0.00 4.35
368 1733 4.054780 TGTCCGAGCATATTACACCTTC 57.945 45.455 0.00 0.00 0.00 3.46
380 1745 2.200373 ACACCTTCCTGTATTGCCAC 57.800 50.000 0.00 0.00 0.00 5.01
393 1922 0.888736 TTGCCACGGTGGATGTTCTG 60.889 55.000 30.65 1.78 40.96 3.02
415 1944 4.103153 TGAGATAACCTCATCCCAACCATC 59.897 45.833 0.00 0.00 46.38 3.51
481 2161 6.643770 ACTGCTCACAAAATGATCATGTTTTC 59.356 34.615 9.46 0.00 36.48 2.29
482 2162 5.927689 TGCTCACAAAATGATCATGTTTTCC 59.072 36.000 9.46 0.00 36.48 3.13
523 2204 7.384932 TGTGTACACATTACATCTTGTTCTCAG 59.615 37.037 24.62 0.00 36.21 3.35
531 2212 3.879295 ACATCTTGTTCTCAGTGGTGTTG 59.121 43.478 0.00 0.00 0.00 3.33
534 2215 1.279840 GTTCTCAGTGGTGTTGCGC 59.720 57.895 0.00 0.00 0.00 6.09
559 2240 3.465742 TTGTGCTCATCAGGCTCTATC 57.534 47.619 0.00 0.00 0.00 2.08
568 2249 4.718774 TCATCAGGCTCTATCCAGTTCTTT 59.281 41.667 0.00 0.00 0.00 2.52
571 2252 4.532126 TCAGGCTCTATCCAGTTCTTTTGA 59.468 41.667 0.00 0.00 0.00 2.69
573 2254 4.780021 AGGCTCTATCCAGTTCTTTTGAGA 59.220 41.667 0.00 0.00 0.00 3.27
578 2259 2.483876 TCCAGTTCTTTTGAGACTGCG 58.516 47.619 0.00 0.00 36.82 5.18
583 2264 5.506317 CCAGTTCTTTTGAGACTGCGATTTT 60.506 40.000 0.00 0.00 36.82 1.82
595 2276 2.780014 CTGCGATTTTCGTGCATCAATC 59.220 45.455 0.00 0.00 42.81 2.67
597 2278 2.780014 GCGATTTTCGTGCATCAATCAG 59.220 45.455 0.00 0.00 42.81 2.90
598 2279 3.357021 CGATTTTCGTGCATCAATCAGG 58.643 45.455 0.00 0.00 34.72 3.86
599 2280 2.634982 TTTTCGTGCATCAATCAGGC 57.365 45.000 0.00 0.00 0.00 4.85
600 2281 1.825090 TTTCGTGCATCAATCAGGCT 58.175 45.000 0.00 0.00 0.00 4.58
601 2282 1.372582 TTCGTGCATCAATCAGGCTC 58.627 50.000 0.00 0.00 0.00 4.70
602 2283 0.807275 TCGTGCATCAATCAGGCTCG 60.807 55.000 0.00 0.00 43.44 5.03
609 2290 1.822613 CAATCAGGCTCGCAGGCAT 60.823 57.895 11.23 0.00 44.19 4.40
640 2321 5.590259 TGTGTTTTTCTCCCTCTTCTTCTTG 59.410 40.000 0.00 0.00 0.00 3.02
653 2337 3.550437 TCTTCTTGAGCTAGATTGCCC 57.450 47.619 0.00 0.00 0.00 5.36
660 2344 2.170607 TGAGCTAGATTGCCCAGGTTAC 59.829 50.000 0.00 0.00 0.00 2.50
663 2347 2.101917 GCTAGATTGCCCAGGTTACGTA 59.898 50.000 0.00 0.00 0.00 3.57
664 2348 3.431207 GCTAGATTGCCCAGGTTACGTAA 60.431 47.826 3.29 3.29 0.00 3.18
665 2349 3.926058 AGATTGCCCAGGTTACGTAAT 57.074 42.857 11.86 0.00 0.00 1.89
666 2350 3.805207 AGATTGCCCAGGTTACGTAATC 58.195 45.455 11.86 11.26 0.00 1.75
667 2351 2.406596 TTGCCCAGGTTACGTAATCC 57.593 50.000 14.91 15.04 0.00 3.01
668 2352 0.542805 TGCCCAGGTTACGTAATCCC 59.457 55.000 14.91 10.58 0.00 3.85
669 2353 0.835276 GCCCAGGTTACGTAATCCCT 59.165 55.000 14.91 12.69 0.00 4.20
670 2354 1.474498 GCCCAGGTTACGTAATCCCTG 60.474 57.143 26.73 26.73 43.34 4.45
671 2355 1.835531 CCCAGGTTACGTAATCCCTGT 59.164 52.381 29.12 7.90 42.39 4.00
672 2356 2.237893 CCCAGGTTACGTAATCCCTGTT 59.762 50.000 29.12 7.59 42.39 3.16
673 2357 3.267483 CCAGGTTACGTAATCCCTGTTG 58.733 50.000 29.12 18.40 42.39 3.33
674 2358 3.307199 CCAGGTTACGTAATCCCTGTTGT 60.307 47.826 29.12 6.38 42.39 3.32
675 2359 4.081531 CCAGGTTACGTAATCCCTGTTGTA 60.082 45.833 29.12 0.00 42.39 2.41
698 2382 8.033038 TGTAACATGTACTTGAGACCTGATTAC 58.967 37.037 15.13 10.37 0.00 1.89
734 2418 1.903404 CTTGTGCGCCTTCCCCTTT 60.903 57.895 4.18 0.00 0.00 3.11
735 2419 1.456705 TTGTGCGCCTTCCCCTTTT 60.457 52.632 4.18 0.00 0.00 2.27
736 2420 1.045911 TTGTGCGCCTTCCCCTTTTT 61.046 50.000 4.18 0.00 0.00 1.94
737 2421 1.289066 GTGCGCCTTCCCCTTTTTC 59.711 57.895 4.18 0.00 0.00 2.29
738 2422 1.152652 TGCGCCTTCCCCTTTTTCA 60.153 52.632 4.18 0.00 0.00 2.69
739 2423 0.757188 TGCGCCTTCCCCTTTTTCAA 60.757 50.000 4.18 0.00 0.00 2.69
740 2424 0.391228 GCGCCTTCCCCTTTTTCAAA 59.609 50.000 0.00 0.00 0.00 2.69
741 2425 1.202592 GCGCCTTCCCCTTTTTCAAAA 60.203 47.619 0.00 0.00 0.00 2.44
742 2426 2.754472 CGCCTTCCCCTTTTTCAAAAG 58.246 47.619 5.21 5.21 43.82 2.27
897 2588 1.873270 GCCCTTTTTGTAGGCGTGGG 61.873 60.000 0.00 0.00 36.84 4.61
906 2687 3.846955 TAGGCGTGGGCTACTTTTC 57.153 52.632 0.00 0.00 39.70 2.29
1009 3286 2.900546 CCCTATTCCTGCCGAGAATAGT 59.099 50.000 18.60 0.00 46.23 2.12
1061 3343 3.116531 GAACAGTACCCGCCGCAC 61.117 66.667 0.00 0.00 0.00 5.34
1190 3476 2.571757 CAGAAGAGCCGCCACGTA 59.428 61.111 0.00 0.00 0.00 3.57
1309 3595 1.690985 CTCCTCAAGGTCCCCTCCC 60.691 68.421 0.00 0.00 36.34 4.30
1351 3650 4.015872 ACTTATACACACACAACTGGGG 57.984 45.455 0.00 0.00 0.00 4.96
1393 3692 2.606961 CGACGCTGTGTGGCATGTT 61.607 57.895 0.00 0.00 0.00 2.71
1503 3802 0.395311 TTCTCCATCCGTACTCGCCT 60.395 55.000 0.00 0.00 35.54 5.52
1558 3857 7.341445 ACTCTGTCTTCCACTCACTATATTC 57.659 40.000 0.00 0.00 0.00 1.75
1562 3861 8.053355 TCTGTCTTCCACTCACTATATTCTACA 58.947 37.037 0.00 0.00 0.00 2.74
1563 3862 8.589701 TGTCTTCCACTCACTATATTCTACAA 57.410 34.615 0.00 0.00 0.00 2.41
1564 3863 9.201989 TGTCTTCCACTCACTATATTCTACAAT 57.798 33.333 0.00 0.00 0.00 2.71
1609 3912 9.539825 CTCTAGCATAAGTTTGATAGACACATT 57.460 33.333 8.17 0.00 39.12 2.71
1652 3956 1.002274 GCTTCTCTGGAGGGGAGGA 59.998 63.158 0.00 0.00 0.00 3.71
1670 3974 4.469586 GGAGGAGAATTCTGGAAAGAGAGT 59.530 45.833 14.00 0.00 0.00 3.24
1718 4022 2.514592 AATGGCACCGCTGGATCG 60.515 61.111 0.00 0.00 0.00 3.69
1726 4030 2.969238 CGCTGGATCGGATGGTGC 60.969 66.667 0.00 0.00 0.00 5.01
1727 4031 2.592861 GCTGGATCGGATGGTGCC 60.593 66.667 0.00 0.00 0.00 5.01
1728 4032 2.910360 CTGGATCGGATGGTGCCA 59.090 61.111 0.00 0.00 0.00 4.92
1733 4037 2.016393 GATCGGATGGTGCCAGTCGA 62.016 60.000 16.55 16.55 38.14 4.20
1742 4046 1.537776 GGTGCCAGTCGAGATGATGAG 60.538 57.143 0.00 0.00 0.00 2.90
1748 4052 0.316841 GTCGAGATGATGAGGCCCTC 59.683 60.000 2.98 2.98 0.00 4.30
1783 4087 5.183140 GGCAATCAGTTTTTCCTTGTAGCTA 59.817 40.000 0.00 0.00 0.00 3.32
1789 4093 7.732996 TCAGTTTTTCCTTGTAGCTAGTACTT 58.267 34.615 0.00 0.00 32.19 2.24
1791 4095 6.867293 AGTTTTTCCTTGTAGCTAGTACTTCG 59.133 38.462 0.00 0.00 32.19 3.79
1795 4099 3.066481 CCTTGTAGCTAGTACTTCGTCCC 59.934 52.174 0.00 0.00 32.19 4.46
1796 4100 3.354948 TGTAGCTAGTACTTCGTCCCA 57.645 47.619 0.00 0.00 32.19 4.37
1798 4102 5.039920 TGTAGCTAGTACTTCGTCCCATA 57.960 43.478 0.00 0.00 32.19 2.74
1799 4103 5.628130 TGTAGCTAGTACTTCGTCCCATAT 58.372 41.667 0.00 0.00 32.19 1.78
1801 4105 7.226441 TGTAGCTAGTACTTCGTCCCATATTA 58.774 38.462 0.00 0.00 32.19 0.98
1803 4107 7.778185 AGCTAGTACTTCGTCCCATATTAAT 57.222 36.000 0.00 0.00 0.00 1.40
1805 4109 8.088981 AGCTAGTACTTCGTCCCATATTAATTG 58.911 37.037 0.00 0.00 0.00 2.32
1806 4110 8.086522 GCTAGTACTTCGTCCCATATTAATTGA 58.913 37.037 0.00 0.00 0.00 2.57
1807 4111 9.408069 CTAGTACTTCGTCCCATATTAATTGAC 57.592 37.037 0.00 0.00 0.00 3.18
1809 4113 4.510340 ACTTCGTCCCATATTAATTGACGC 59.490 41.667 17.44 0.00 46.06 5.19
1813 4143 4.509970 CGTCCCATATTAATTGACGCTCAA 59.490 41.667 13.03 3.49 41.71 3.02
1821 4151 1.808411 ATTGACGCTCAAACGGATGT 58.192 45.000 4.87 0.00 40.12 3.06
1824 4154 2.536365 TGACGCTCAAACGGATGTATC 58.464 47.619 0.00 0.00 37.37 2.24
1828 4158 2.726760 CGCTCAAACGGATGTATCTAGC 59.273 50.000 0.00 0.00 0.00 3.42
1829 4159 3.717707 GCTCAAACGGATGTATCTAGCA 58.282 45.455 0.00 0.00 0.00 3.49
1830 4160 3.491267 GCTCAAACGGATGTATCTAGCAC 59.509 47.826 0.00 0.00 0.00 4.40
1832 4162 4.682787 TCAAACGGATGTATCTAGCACTG 58.317 43.478 0.00 0.00 0.00 3.66
1833 4163 4.401202 TCAAACGGATGTATCTAGCACTGA 59.599 41.667 0.00 0.00 0.00 3.41
1834 4164 5.105513 TCAAACGGATGTATCTAGCACTGAA 60.106 40.000 0.00 0.00 0.00 3.02
1835 4165 5.339008 AACGGATGTATCTAGCACTGAAA 57.661 39.130 0.00 0.00 0.00 2.69
1838 4168 7.233389 ACGGATGTATCTAGCACTGAAATAT 57.767 36.000 0.00 0.00 0.00 1.28
1839 4169 7.093354 ACGGATGTATCTAGCACTGAAATATG 58.907 38.462 0.00 0.00 0.00 1.78
1840 4170 7.093354 CGGATGTATCTAGCACTGAAATATGT 58.907 38.462 0.00 0.00 0.00 2.29
1841 4171 7.274468 CGGATGTATCTAGCACTGAAATATGTC 59.726 40.741 0.00 0.00 0.00 3.06
1842 4172 8.310382 GGATGTATCTAGCACTGAAATATGTCT 58.690 37.037 0.00 0.00 0.00 3.41
1843 4173 9.138062 GATGTATCTAGCACTGAAATATGTCTG 57.862 37.037 0.00 0.00 0.00 3.51
1844 4174 7.436933 TGTATCTAGCACTGAAATATGTCTGG 58.563 38.462 4.93 0.00 0.00 3.86
1845 4175 6.737720 ATCTAGCACTGAAATATGTCTGGA 57.262 37.500 4.93 0.00 0.00 3.86
1887 4253 2.710096 AATATGGAACGGAGGGTGTG 57.290 50.000 0.00 0.00 0.00 3.82
1897 4263 4.628963 ACGGAGGGTGTGTATTTTAACT 57.371 40.909 0.00 0.00 0.00 2.24
1990 4359 0.735632 CGACAGAGAAGGCTGCTGAC 60.736 60.000 0.00 2.28 39.51 3.51
2044 4413 2.481969 CGAAGCTATGCTCAGGTGCTTA 60.482 50.000 0.00 0.00 42.95 3.09
2045 4414 3.737850 GAAGCTATGCTCAGGTGCTTAT 58.262 45.455 0.00 0.00 42.95 1.73
2088 4458 5.405269 GCATGGTTTTAATTGCTTCGACTTT 59.595 36.000 0.00 0.00 32.41 2.66
2260 4630 5.203528 AGGAAATATTTACAGGTGCTGCAT 58.796 37.500 12.97 0.00 34.37 3.96
2281 4652 2.699846 TGCCTTCCTGCTTTGTTTCATT 59.300 40.909 0.00 0.00 0.00 2.57
2293 4664 7.093354 TGCTTTGTTTCATTGTCAACTGTTTA 58.907 30.769 0.00 0.00 0.00 2.01
2471 4848 8.364129 TCAATTTTCAGGTAGAATTTTTGCAC 57.636 30.769 0.00 0.00 35.83 4.57
2488 4865 2.295909 TGCACAGTCCCAATAAAGCAAC 59.704 45.455 0.00 0.00 0.00 4.17
2556 4934 3.028850 CAGATGTTGGCTTTCCATCCAT 58.971 45.455 0.00 0.00 43.05 3.41
2576 4954 9.349713 CATCCATATTAAACCACCTAAAGCTAA 57.650 33.333 0.00 0.00 0.00 3.09
2592 4989 7.274250 CCTAAAGCTAAAAATGATGTGCTGAAC 59.726 37.037 0.00 0.00 0.00 3.18
2605 5002 3.119884 TGTGCTGAACTTTTGTCAGTGTG 60.120 43.478 3.58 0.00 33.33 3.82
2606 5003 3.081061 TGCTGAACTTTTGTCAGTGTGT 58.919 40.909 3.58 0.00 33.33 3.72
2622 5020 7.598869 TGTCAGTGTGTACTTATCAATTCAGTC 59.401 37.037 0.00 0.00 34.07 3.51
2624 5022 6.586463 CAGTGTGTACTTATCAATTCAGTCGT 59.414 38.462 0.00 0.00 34.07 4.34
2659 5057 8.641541 AGGAGAATGTTAAAATTCAACATGTGT 58.358 29.630 18.55 4.52 43.94 3.72
2839 5238 4.272018 CAGAGGAGTTATTGCTGAATTCCG 59.728 45.833 2.27 0.00 37.67 4.30
2849 5248 0.933097 CTGAATTCCGACTGCCATCG 59.067 55.000 2.27 0.00 41.89 3.84
2883 5284 8.770828 TGTAAGTTGTTTATGTAAGTTGAGCTC 58.229 33.333 6.82 6.82 0.00 4.09
2953 5354 3.374988 TGCAGAGAAAAATATGGCAGTCG 59.625 43.478 0.00 0.00 0.00 4.18
3000 5401 1.380380 CTGGCATTCCAAGGACCCC 60.380 63.158 0.00 0.00 42.91 4.95
3062 5463 6.057533 TGACAATCATGATCCAAGTGTATCC 58.942 40.000 9.06 0.00 0.00 2.59
3078 5479 2.386661 ATCCGATGAAGAAGCACGTT 57.613 45.000 0.00 0.00 0.00 3.99
3246 5647 5.784578 TGTTATAGGCGAGAGAAGCAATA 57.215 39.130 0.00 0.00 36.08 1.90
3353 5754 7.816031 GTGATTTCCAGTGATGAAAACATGATT 59.184 33.333 0.00 0.00 37.02 2.57
3381 5782 2.826777 ATTCACCTGCTGGAAGGCGG 62.827 60.000 17.64 0.00 41.46 6.13
3403 5804 0.249398 AAGGCTTCGCGGTGAATACT 59.751 50.000 6.13 3.54 35.63 2.12
3406 5807 0.370273 GCTTCGCGGTGAATACTGTG 59.630 55.000 6.13 0.00 43.50 3.66
3407 5808 0.370273 CTTCGCGGTGAATACTGTGC 59.630 55.000 6.13 0.00 42.20 4.57
3408 5809 0.037697 TTCGCGGTGAATACTGTGCT 60.038 50.000 6.13 0.00 42.20 4.40
3428 5829 3.303593 GCTGTGATTCATTCTACCATGCG 60.304 47.826 0.00 0.00 0.00 4.73
3435 5836 3.897325 TCATTCTACCATGCGATCGTAC 58.103 45.455 17.81 0.88 0.00 3.67
3448 5849 3.364664 GCGATCGTACGATTGGTATCAGA 60.365 47.826 35.15 7.40 36.71 3.27
3576 5977 0.452987 AGCATGCACGGCAAATAGTG 59.547 50.000 21.98 0.00 43.62 2.74
3768 6647 4.065789 GTGTTTCTGTAAACCTGAGGAGG 58.934 47.826 4.99 0.00 43.66 4.30
3780 6660 2.436173 CCTGAGGAGGGATGAGGTTTAC 59.564 54.545 0.00 0.00 35.40 2.01
3887 6768 9.617975 GTTCATTCATTTGAAAAGTAGAAGAGG 57.382 33.333 0.00 0.00 37.36 3.69
3934 6836 3.780850 CCAGTTTTCATAGTACCCCCTCT 59.219 47.826 0.00 0.00 0.00 3.69
4010 6915 7.579916 GCTCTTATATTAGTTTAGGGAGGGAGC 60.580 44.444 0.00 0.00 33.61 4.70
4097 7842 7.247456 TCCCACACACTTGTATTACAGATAA 57.753 36.000 0.00 0.00 33.30 1.75
4120 7865 5.321959 TGTCAGATAGAGAGCACAAGAAG 57.678 43.478 0.00 0.00 0.00 2.85
4215 7969 1.135257 TGAAAACCACGCAACACAAGG 60.135 47.619 0.00 0.00 0.00 3.61
4216 7970 1.133407 GAAAACCACGCAACACAAGGA 59.867 47.619 0.00 0.00 0.00 3.36
4217 7971 0.454196 AAACCACGCAACACAAGGAC 59.546 50.000 0.00 0.00 0.00 3.85
4261 8015 1.227380 ACCGGAGCAGCAATCGATC 60.227 57.895 9.46 0.00 0.00 3.69
4262 8016 1.227350 CCGGAGCAGCAATCGATCA 60.227 57.895 0.00 0.00 0.00 2.92
4263 8017 1.220169 CCGGAGCAGCAATCGATCAG 61.220 60.000 0.00 0.00 0.00 2.90
4264 8018 0.249197 CGGAGCAGCAATCGATCAGA 60.249 55.000 0.00 0.00 0.00 3.27
4303 8057 1.299850 CTGCGGAATGGCGTCGATA 60.300 57.895 0.00 0.00 35.06 2.92
4618 8375 3.418913 CAACAATGGCGACGGCGA 61.419 61.111 18.90 0.00 41.24 5.54
4620 8377 2.255172 AACAATGGCGACGGCGAAA 61.255 52.632 18.90 0.00 41.24 3.46
4621 8378 2.202298 CAATGGCGACGGCGAAAC 60.202 61.111 18.90 3.59 41.24 2.78
4622 8379 3.428282 AATGGCGACGGCGAAACC 61.428 61.111 18.90 6.92 41.24 3.27
4623 8380 4.690719 ATGGCGACGGCGAAACCA 62.691 61.111 18.90 14.20 41.24 3.67
4624 8381 4.912485 TGGCGACGGCGAAACCAA 62.912 61.111 18.90 0.00 41.24 3.67
4625 8382 4.379143 GGCGACGGCGAAACCAAC 62.379 66.667 18.90 0.00 41.24 3.77
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
57 59 1.542915 CCTTCAAGTCCACCTGCAATG 59.457 52.381 0.00 0.00 0.00 2.82
88 90 4.576873 TCTCTCCACTATCTCGTCATGTTC 59.423 45.833 0.00 0.00 0.00 3.18
96 98 6.434596 CAAAGTATGTCTCTCCACTATCTCG 58.565 44.000 0.00 0.00 0.00 4.04
120 122 4.079958 AGTTTCACCATATAGAACCACCCC 60.080 45.833 0.00 0.00 0.00 4.95
209 211 2.163613 GCATTTTGCCCGTTAGTAAGCT 59.836 45.455 0.00 0.00 37.42 3.74
233 437 8.728596 AGACTTTACACCTATAATAGCATCCT 57.271 34.615 0.00 0.00 0.00 3.24
234 438 8.035984 GGAGACTTTACACCTATAATAGCATCC 58.964 40.741 0.00 0.00 0.00 3.51
260 464 4.321230 AAGCAATTCTTAAACTGCCGAAGG 60.321 41.667 0.00 0.00 42.30 3.46
291 495 2.418628 ACGACACTTCAACAACAACCAG 59.581 45.455 0.00 0.00 0.00 4.00
310 514 1.883021 GACAGAAAATGCCCCCACG 59.117 57.895 0.00 0.00 0.00 4.94
313 517 0.608035 TCACGACAGAAAATGCCCCC 60.608 55.000 0.00 0.00 0.00 5.40
368 1733 0.107214 ATCCACCGTGGCAATACAGG 60.107 55.000 13.19 0.00 37.47 4.00
380 1745 3.133003 AGGTTATCTCAGAACATCCACCG 59.867 47.826 0.00 0.00 0.00 4.94
393 1922 4.349342 AGATGGTTGGGATGAGGTTATCTC 59.651 45.833 0.00 0.00 42.74 2.75
481 2161 5.008613 GTGTACACATGCATAAACTATGGGG 59.991 44.000 21.14 0.00 36.68 4.96
482 2162 5.588246 TGTGTACACATGCATAAACTATGGG 59.412 40.000 24.62 0.00 36.21 4.00
510 2191 3.304257 GCAACACCACTGAGAACAAGATG 60.304 47.826 0.00 0.00 0.00 2.90
534 2215 0.376152 GCCTGATGAGCACAATCGTG 59.624 55.000 0.00 0.00 46.56 4.35
549 2230 4.836825 TCAAAAGAACTGGATAGAGCCTG 58.163 43.478 0.00 0.00 0.00 4.85
559 2240 2.483876 TCGCAGTCTCAAAAGAACTGG 58.516 47.619 4.14 0.00 34.20 4.00
568 2249 1.194547 GCACGAAAATCGCAGTCTCAA 59.805 47.619 0.00 0.00 45.12 3.02
571 2252 1.394917 GATGCACGAAAATCGCAGTCT 59.605 47.619 0.00 0.00 45.12 3.24
573 2254 1.155889 TGATGCACGAAAATCGCAGT 58.844 45.000 0.00 0.00 45.12 4.40
578 2259 3.111098 GCCTGATTGATGCACGAAAATC 58.889 45.455 0.00 0.00 0.00 2.17
583 2264 0.807275 CGAGCCTGATTGATGCACGA 60.807 55.000 0.00 0.00 40.69 4.35
595 2276 1.144716 TAGAATGCCTGCGAGCCTG 59.855 57.895 0.00 0.00 0.00 4.85
597 2278 0.462759 AAGTAGAATGCCTGCGAGCC 60.463 55.000 0.00 0.00 32.34 4.70
598 2279 0.654683 CAAGTAGAATGCCTGCGAGC 59.345 55.000 0.00 0.00 32.34 5.03
599 2280 1.662629 CACAAGTAGAATGCCTGCGAG 59.337 52.381 0.00 0.00 32.34 5.03
600 2281 1.001974 ACACAAGTAGAATGCCTGCGA 59.998 47.619 0.00 0.00 32.34 5.10
601 2282 1.442769 ACACAAGTAGAATGCCTGCG 58.557 50.000 0.00 0.00 32.34 5.18
602 2283 3.923017 AAACACAAGTAGAATGCCTGC 57.077 42.857 0.00 0.00 0.00 4.85
609 2290 6.248569 AGAGGGAGAAAAACACAAGTAGAA 57.751 37.500 0.00 0.00 0.00 2.10
640 2321 2.803492 CGTAACCTGGGCAATCTAGCTC 60.803 54.545 0.00 0.00 34.90 4.09
660 2344 6.103997 AGTACATGTTACAACAGGGATTACG 58.896 40.000 2.30 0.00 44.34 3.18
663 2347 6.539173 TCAAGTACATGTTACAACAGGGATT 58.461 36.000 2.30 0.00 44.34 3.01
664 2348 6.013725 TCTCAAGTACATGTTACAACAGGGAT 60.014 38.462 2.30 0.00 44.34 3.85
665 2349 5.305902 TCTCAAGTACATGTTACAACAGGGA 59.694 40.000 2.30 0.00 44.34 4.20
666 2350 5.408604 GTCTCAAGTACATGTTACAACAGGG 59.591 44.000 2.30 3.89 44.34 4.45
667 2351 5.408604 GGTCTCAAGTACATGTTACAACAGG 59.591 44.000 2.30 5.28 45.43 4.00
668 2352 6.146184 CAGGTCTCAAGTACATGTTACAACAG 59.854 42.308 2.30 0.00 43.04 3.16
669 2353 5.989168 CAGGTCTCAAGTACATGTTACAACA 59.011 40.000 2.30 0.00 44.06 3.33
670 2354 6.220930 TCAGGTCTCAAGTACATGTTACAAC 58.779 40.000 2.30 0.00 30.94 3.32
671 2355 6.413783 TCAGGTCTCAAGTACATGTTACAA 57.586 37.500 2.30 0.00 30.94 2.41
672 2356 6.605471 ATCAGGTCTCAAGTACATGTTACA 57.395 37.500 2.30 0.00 30.94 2.41
673 2357 8.033038 TGTAATCAGGTCTCAAGTACATGTTAC 58.967 37.037 2.30 0.25 32.38 2.50
674 2358 8.129496 TGTAATCAGGTCTCAAGTACATGTTA 57.871 34.615 2.30 0.00 30.94 2.41
675 2359 7.004555 TGTAATCAGGTCTCAAGTACATGTT 57.995 36.000 2.30 0.00 30.94 2.71
698 2382 3.125316 CAAGGCACCAACAACTTCATTG 58.875 45.455 0.00 0.00 44.60 2.82
716 2400 1.463553 AAAAGGGGAAGGCGCACAAG 61.464 55.000 10.83 0.00 0.00 3.16
836 2527 8.685838 ACTCACTATGCCAACTAGTTTAAAAA 57.314 30.769 5.07 0.00 0.00 1.94
837 2528 8.685838 AACTCACTATGCCAACTAGTTTAAAA 57.314 30.769 5.07 0.00 0.00 1.52
838 2529 8.685838 AAACTCACTATGCCAACTAGTTTAAA 57.314 30.769 5.07 0.00 34.79 1.52
839 2530 9.431887 CTAAACTCACTATGCCAACTAGTTTAA 57.568 33.333 5.07 0.00 37.44 1.52
840 2531 8.591072 ACTAAACTCACTATGCCAACTAGTTTA 58.409 33.333 5.07 0.00 37.07 2.01
841 2532 7.450903 ACTAAACTCACTATGCCAACTAGTTT 58.549 34.615 5.07 0.00 38.71 2.66
842 2533 7.005709 ACTAAACTCACTATGCCAACTAGTT 57.994 36.000 1.12 1.12 0.00 2.24
843 2534 6.437793 AGACTAAACTCACTATGCCAACTAGT 59.562 38.462 0.00 0.00 0.00 2.57
844 2535 6.868622 AGACTAAACTCACTATGCCAACTAG 58.131 40.000 0.00 0.00 0.00 2.57
845 2536 6.852420 AGACTAAACTCACTATGCCAACTA 57.148 37.500 0.00 0.00 0.00 2.24
846 2537 5.746990 AGACTAAACTCACTATGCCAACT 57.253 39.130 0.00 0.00 0.00 3.16
847 2538 6.426937 TGAAAGACTAAACTCACTATGCCAAC 59.573 38.462 0.00 0.00 0.00 3.77
848 2539 6.530120 TGAAAGACTAAACTCACTATGCCAA 58.470 36.000 0.00 0.00 0.00 4.52
849 2540 6.109156 TGAAAGACTAAACTCACTATGCCA 57.891 37.500 0.00 0.00 0.00 4.92
850 2541 6.037610 CCATGAAAGACTAAACTCACTATGCC 59.962 42.308 0.00 0.00 0.00 4.40
851 2542 6.457528 GCCATGAAAGACTAAACTCACTATGC 60.458 42.308 0.00 0.00 0.00 3.14
852 2543 6.037610 GGCCATGAAAGACTAAACTCACTATG 59.962 42.308 0.00 0.00 0.00 2.23
853 2544 6.116126 GGCCATGAAAGACTAAACTCACTAT 58.884 40.000 0.00 0.00 0.00 2.12
854 2545 5.488341 GGCCATGAAAGACTAAACTCACTA 58.512 41.667 0.00 0.00 0.00 2.74
855 2546 4.327680 GGCCATGAAAGACTAAACTCACT 58.672 43.478 0.00 0.00 0.00 3.41
897 2588 2.762745 TCCAAGACACGGAAAAGTAGC 58.237 47.619 0.00 0.00 0.00 3.58
906 2687 1.026718 GCCTGGAATCCAAGACACGG 61.027 60.000 2.61 0.61 30.80 4.94
973 3242 2.758852 TAGGGCCCACCGGAAAGAGT 62.759 60.000 27.56 0.00 46.96 3.24
974 3243 1.345715 ATAGGGCCCACCGGAAAGAG 61.346 60.000 27.56 0.00 46.96 2.85
975 3244 0.917333 AATAGGGCCCACCGGAAAGA 60.917 55.000 27.56 0.00 46.96 2.52
976 3245 0.465642 GAATAGGGCCCACCGGAAAG 60.466 60.000 27.56 0.00 46.96 2.62
1061 3343 1.734137 CTACGGTCGTGGATGAGGG 59.266 63.158 6.25 0.00 0.00 4.30
1309 3595 1.760405 AATATAAGGCCAGGGGGAGG 58.240 55.000 5.01 0.00 35.59 4.30
1345 3644 3.415087 GATGCTCCCAGCCCCAGT 61.415 66.667 0.00 0.00 41.51 4.00
1351 3650 4.166888 TCAGGCGATGCTCCCAGC 62.167 66.667 0.00 0.00 42.82 4.85
1384 3683 0.388134 CTCTGCTGCAAACATGCCAC 60.388 55.000 3.02 0.00 0.00 5.01
1393 3692 2.359107 CTTCGGGCTCTGCTGCAA 60.359 61.111 3.02 0.00 34.04 4.08
1503 3802 6.574465 GCTTGTAGTGATGAAGGAGACCTTTA 60.574 42.308 4.51 1.15 44.82 1.85
1515 3814 4.158579 AGAGTCGAATGCTTGTAGTGATGA 59.841 41.667 0.00 0.00 0.00 2.92
1558 3857 6.347725 GCTGGACTCAAAACTGTACATTGTAG 60.348 42.308 0.00 1.60 0.00 2.74
1562 3861 4.718961 AGCTGGACTCAAAACTGTACATT 58.281 39.130 0.00 0.00 0.00 2.71
1563 3862 4.319177 GAGCTGGACTCAAAACTGTACAT 58.681 43.478 0.00 0.00 45.49 2.29
1564 3863 3.728845 GAGCTGGACTCAAAACTGTACA 58.271 45.455 0.00 0.00 45.49 2.90
1609 3912 3.057315 GGCTGCAGTTAAGCAAGAAATCA 60.057 43.478 16.64 0.00 45.13 2.57
1652 3956 7.568366 AGATCCATACTCTCTTTCCAGAATTCT 59.432 37.037 0.88 0.88 0.00 2.40
1718 4022 0.531532 CATCTCGACTGGCACCATCC 60.532 60.000 0.00 0.00 0.00 3.51
1724 4028 0.749049 CCTCATCATCTCGACTGGCA 59.251 55.000 0.00 0.00 0.00 4.92
1726 4030 0.033228 GGCCTCATCATCTCGACTGG 59.967 60.000 0.00 0.00 0.00 4.00
1727 4031 0.033228 GGGCCTCATCATCTCGACTG 59.967 60.000 0.84 0.00 0.00 3.51
1728 4032 0.105760 AGGGCCTCATCATCTCGACT 60.106 55.000 0.00 0.00 0.00 4.18
1742 4046 1.835693 CCTTCTCCAGATGAGGGCC 59.164 63.158 0.00 0.00 41.76 5.80
1748 4052 3.278668 ACTGATTGCCTTCTCCAGATG 57.721 47.619 0.00 0.00 0.00 2.90
1791 4095 6.199393 GTTTGAGCGTCAATTAATATGGGAC 58.801 40.000 0.00 0.00 36.11 4.46
1795 4099 6.043327 TCCGTTTGAGCGTCAATTAATATG 57.957 37.500 0.00 0.00 36.11 1.78
1796 4100 6.260050 ACATCCGTTTGAGCGTCAATTAATAT 59.740 34.615 0.00 0.00 36.11 1.28
1798 4102 4.394920 ACATCCGTTTGAGCGTCAATTAAT 59.605 37.500 2.09 0.00 36.11 1.40
1799 4103 3.749088 ACATCCGTTTGAGCGTCAATTAA 59.251 39.130 2.09 0.00 36.11 1.40
1801 4105 2.151202 ACATCCGTTTGAGCGTCAATT 58.849 42.857 2.09 0.00 36.11 2.32
1803 4107 2.442212 TACATCCGTTTGAGCGTCAA 57.558 45.000 0.00 0.00 34.03 3.18
1805 4109 2.810650 AGATACATCCGTTTGAGCGTC 58.189 47.619 0.00 0.00 0.00 5.19
1806 4110 2.961526 AGATACATCCGTTTGAGCGT 57.038 45.000 0.00 0.00 0.00 5.07
1807 4111 2.726760 GCTAGATACATCCGTTTGAGCG 59.273 50.000 0.00 0.00 0.00 5.03
1808 4112 3.491267 GTGCTAGATACATCCGTTTGAGC 59.509 47.826 0.00 0.00 0.00 4.26
1809 4113 4.742167 CAGTGCTAGATACATCCGTTTGAG 59.258 45.833 0.00 0.00 0.00 3.02
1813 4143 5.339008 TTTCAGTGCTAGATACATCCGTT 57.661 39.130 0.00 0.00 0.00 4.44
1821 4151 7.839680 TCCAGACATATTTCAGTGCTAGATA 57.160 36.000 0.00 0.00 0.00 1.98
1824 4154 7.436933 TGTATCCAGACATATTTCAGTGCTAG 58.563 38.462 0.00 0.00 0.00 3.42
1828 4158 7.664082 GGATGTATCCAGACATATTTCAGTG 57.336 40.000 6.03 0.00 46.38 3.66
1862 4192 3.000727 CCCTCCGTTCCATATTAATCGC 58.999 50.000 0.00 0.00 0.00 4.58
1864 4194 4.755123 CACACCCTCCGTTCCATATTAATC 59.245 45.833 0.00 0.00 0.00 1.75
1897 4263 5.335191 GGCCAAACATCAACAAAAACAAACA 60.335 36.000 0.00 0.00 0.00 2.83
1990 4359 4.281941 TCCAGCAGTACCTCTAGCAATATG 59.718 45.833 0.00 0.00 0.00 1.78
2088 4458 6.946340 TGAGCATTCTAACTTGAATAGGTCA 58.054 36.000 0.06 0.06 38.28 4.02
2230 4600 7.128263 AGCACCTGTAAATATTTCCTAGGGTTA 59.872 37.037 20.52 0.00 0.00 2.85
2260 4630 1.774110 TGAAACAAAGCAGGAAGGCA 58.226 45.000 0.00 0.00 35.83 4.75
2281 4652 9.772973 AGAACATAACATAGTAAACAGTTGACA 57.227 29.630 3.44 0.00 0.00 3.58
2293 4664 9.326413 GTTAGCATACCAAGAACATAACATAGT 57.674 33.333 0.00 0.00 0.00 2.12
2303 4674 5.468746 TGAAGTGTGTTAGCATACCAAGAAC 59.531 40.000 2.85 0.00 37.43 3.01
2465 4842 2.961741 TGCTTTATTGGGACTGTGCAAA 59.038 40.909 0.77 0.00 0.00 3.68
2471 4848 6.201517 CAATATCGTTGCTTTATTGGGACTG 58.798 40.000 0.00 0.00 32.29 3.51
2511 4889 8.487313 TGAACGGCCATATATATTGTAATGTC 57.513 34.615 2.24 0.00 0.00 3.06
2526 4904 1.315257 GCCAACATCTGAACGGCCAT 61.315 55.000 2.24 0.00 36.73 4.40
2529 4907 0.598065 AAAGCCAACATCTGAACGGC 59.402 50.000 0.00 0.00 43.31 5.68
2576 4954 6.339730 TGACAAAAGTTCAGCACATCATTTT 58.660 32.000 0.00 0.00 0.00 1.82
2592 4989 9.599322 GAATTGATAAGTACACACTGACAAAAG 57.401 33.333 0.00 0.00 34.36 2.27
2605 5002 6.812160 ACAGGAACGACTGAATTGATAAGTAC 59.188 38.462 12.09 0.00 40.97 2.73
2606 5003 6.931838 ACAGGAACGACTGAATTGATAAGTA 58.068 36.000 12.09 0.00 40.97 2.24
2659 5057 2.158682 ACACAATGGCTTCAGTGGTGTA 60.159 45.455 0.00 0.00 40.40 2.90
2839 5238 1.016130 CACTGTGTCCGATGGCAGTC 61.016 60.000 0.00 0.00 39.82 3.51
2849 5248 6.613755 ACATAAACAACTTACACTGTGTCC 57.386 37.500 17.99 0.00 0.00 4.02
2883 5284 5.845985 CAGTTGGTACTGTAATGACTGTG 57.154 43.478 3.03 0.00 45.46 3.66
2953 5354 5.163774 GCATCAGACAAGATTGAAGGACTTC 60.164 44.000 5.14 5.14 39.91 3.01
3062 5463 2.776694 CAGAACGTGCTTCTTCATCG 57.223 50.000 0.00 0.00 37.08 3.84
3078 5479 0.327259 AGCAGCTCTTCCATTGCAGA 59.673 50.000 0.00 0.00 38.97 4.26
3246 5647 1.741770 CGACTAGCCAAAAGGCGCT 60.742 57.895 7.64 0.00 38.90 5.92
3284 5685 4.252073 CAGCTAATCCATGATACAGGAGC 58.748 47.826 0.00 0.00 37.34 4.70
3353 5754 2.290514 CCAGCAGGTGAATTCAGAAGGA 60.291 50.000 8.80 0.00 0.00 3.36
3403 5804 4.284829 TGGTAGAATGAATCACAGCACA 57.715 40.909 0.00 0.00 0.00 4.57
3406 5807 3.303593 CGCATGGTAGAATGAATCACAGC 60.304 47.826 0.00 0.00 0.00 4.40
3407 5808 4.122046 TCGCATGGTAGAATGAATCACAG 58.878 43.478 0.00 0.00 0.00 3.66
3408 5809 4.135747 TCGCATGGTAGAATGAATCACA 57.864 40.909 0.00 0.00 0.00 3.58
3428 5829 5.179742 ACTCTCTGATACCAATCGTACGATC 59.820 44.000 29.51 17.80 34.60 3.69
3435 5836 4.339530 TCTCCAACTCTCTGATACCAATCG 59.660 45.833 0.00 0.00 34.60 3.34
3473 5874 2.679837 CAATTGCACTGAAGGTATCGCT 59.320 45.455 0.00 0.00 0.00 4.93
3576 5977 5.683302 CACGACATCCATAGCGATATATGTC 59.317 44.000 19.63 19.63 39.71 3.06
3736 6615 5.236911 GGTTTACAGAAACACGATGGTACAA 59.763 40.000 0.00 0.00 44.64 2.41
3768 6647 5.008316 ACACAAAAACTCGTAAACCTCATCC 59.992 40.000 0.00 0.00 0.00 3.51
3780 6660 5.924254 TCACATCTACCTACACAAAAACTCG 59.076 40.000 0.00 0.00 0.00 4.18
3887 6768 2.790433 TGCACCTCCTACATCCAAAAC 58.210 47.619 0.00 0.00 0.00 2.43
3980 6885 7.813627 CCTCCCTAAACTAATATAAGAGCGTTC 59.186 40.741 0.00 0.00 0.00 3.95
3995 6900 0.547712 TGCTGCTCCCTCCCTAAACT 60.548 55.000 0.00 0.00 0.00 2.66
4010 6915 2.339418 CTCTTGCTTCTCTCACTGCTG 58.661 52.381 0.00 0.00 0.00 4.41
4097 7842 5.655974 TCTTCTTGTGCTCTCTATCTGACAT 59.344 40.000 0.00 0.00 0.00 3.06
4120 7865 3.218453 TCTCTCTACTGCTGCATAGGTC 58.782 50.000 1.31 0.00 0.00 3.85
4242 7996 1.493950 GATCGATTGCTGCTCCGGTG 61.494 60.000 0.00 0.00 0.00 4.94
4261 8015 3.629855 ACTACACCGTCTGATCTGATCTG 59.370 47.826 17.82 16.82 0.00 2.90
4262 8016 3.892284 ACTACACCGTCTGATCTGATCT 58.108 45.455 17.82 0.00 0.00 2.75
4263 8017 4.336993 AGAACTACACCGTCTGATCTGATC 59.663 45.833 10.72 10.72 0.00 2.92
4264 8018 4.097135 CAGAACTACACCGTCTGATCTGAT 59.903 45.833 5.52 0.00 0.00 2.90
4303 8057 0.543277 TCAAGCAGAAGGGCATCGAT 59.457 50.000 0.00 0.00 35.83 3.59
4420 8174 2.267324 GACCTCCTCAGCAGCACC 59.733 66.667 0.00 0.00 0.00 5.01
4421 8175 2.125753 CGACCTCCTCAGCAGCAC 60.126 66.667 0.00 0.00 0.00 4.40
4424 8178 3.074999 GCTCCGACCTCCTCAGCAG 62.075 68.421 0.00 0.00 0.00 4.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.