Multiple sequence alignment - TraesCS7D01G146400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G146400 chr7D 100.000 6694 0 0 1 6694 93769910 93776603 0.000000e+00 12362.0
1 TraesCS7D01G146400 chr7A 93.111 5269 213 51 815 6003 96532729 96537927 0.000000e+00 7581.0
2 TraesCS7D01G146400 chr7A 86.254 662 68 18 6051 6694 96537935 96538591 0.000000e+00 697.0
3 TraesCS7D01G146400 chr7A 78.521 284 22 21 1 249 96531442 96531721 4.180000e-32 150.0
4 TraesCS7D01G146400 chr7B 94.880 4648 178 27 1539 6148 46980562 46985187 0.000000e+00 7210.0
5 TraesCS7D01G146400 chr7B 84.332 868 55 37 698 1522 46979671 46980500 0.000000e+00 774.0
6 TraesCS7D01G146400 chr7B 87.739 261 27 5 6437 6694 46986847 46987105 3.920000e-77 300.0
7 TraesCS7D01G146400 chr7B 87.261 157 11 5 1 149 46971126 46971281 3.210000e-38 171.0
8 TraesCS7D01G146400 chr4A 79.433 141 29 0 6545 6685 511704581 511704721 4.270000e-17 100.0
9 TraesCS7D01G146400 chr5D 94.643 56 2 1 2632 2686 554711113 554711168 1.200000e-12 86.1
10 TraesCS7D01G146400 chr5D 94.595 37 1 1 6657 6693 6091676 6091641 1.000000e-03 56.5
11 TraesCS7D01G146400 chr5D 100.000 29 0 0 6657 6685 6104284 6104256 3.000000e-03 54.7
12 TraesCS7D01G146400 chr5B 77.027 148 34 0 6546 6693 700948631 700948778 1.200000e-12 86.1
13 TraesCS7D01G146400 chr5B 83.333 72 11 1 6622 6693 6210392 6210462 1.560000e-06 65.8
14 TraesCS7D01G146400 chr3A 87.692 65 8 0 6545 6609 719969234 719969298 7.200000e-10 76.8
15 TraesCS7D01G146400 chr4D 75.658 152 29 6 6546 6693 16140396 16140249 1.200000e-07 69.4
16 TraesCS7D01G146400 chr3B 95.238 42 2 0 6545 6586 742169735 742169694 4.330000e-07 67.6
17 TraesCS7D01G146400 chr3B 74.820 139 31 4 6548 6684 372190350 372190486 7.250000e-05 60.2
18 TraesCS7D01G146400 chr3D 94.737 38 2 0 6656 6693 7588191 7588154 7.250000e-05 60.2
19 TraesCS7D01G146400 chr3D 100.000 29 0 0 6657 6685 574057690 574057662 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G146400 chr7D 93769910 93776603 6693 False 12362.000000 12362 100.000000 1 6694 1 chr7D.!!$F1 6693
1 TraesCS7D01G146400 chr7A 96531442 96538591 7149 False 2809.333333 7581 85.962000 1 6694 3 chr7A.!!$F1 6693
2 TraesCS7D01G146400 chr7B 46979671 46987105 7434 False 2761.333333 7210 88.983667 698 6694 3 chr7B.!!$F2 5996

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
611 1140 0.037697 TCGTGTGCATCACCCAGTAC 60.038 55.000 11.99 0.00 43.51 2.73 F
1807 2487 0.099436 CCAAGTTGCTTCCTATGCGC 59.901 55.000 0.00 0.00 0.00 6.09 F
2199 2888 0.037326 TTTCTGCAGGTACAGAGCGG 60.037 55.000 15.13 0.36 46.85 5.52 F
2898 3590 0.322816 TCCTGGCAAATGGAGTCAGC 60.323 55.000 0.00 0.00 0.00 4.26 F
3276 3968 0.443869 CCTCTCGAAATGTTGGTGCG 59.556 55.000 0.00 0.00 0.00 5.34 F
3295 3987 2.798680 CGAACAACGTCTATCCTGAGG 58.201 52.381 0.00 0.00 37.22 3.86 F
4947 5653 0.898320 AACTCTCCATCTCACACCCG 59.102 55.000 0.00 0.00 0.00 5.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1788 2468 0.099436 GCGCATAGGAAGCAACTTGG 59.901 55.000 0.3 0.0 0.00 3.61 R
3249 3941 0.905357 CATTTCGAGAGGGAGGTGGT 59.095 55.000 0.0 0.0 0.00 4.16 R
3298 3990 2.814805 AACATACTTGGCTGCTGGAT 57.185 45.000 0.0 0.0 0.00 3.41 R
4430 5133 2.394563 GCGCTGTTCCTCAGAAGGC 61.395 63.158 0.0 0.0 46.27 4.35 R
4928 5634 0.898320 CGGGTGTGAGATGGAGAGTT 59.102 55.000 0.0 0.0 0.00 3.01 R
5264 5970 2.774234 GAGAAGTGGATCATGGGAAGGA 59.226 50.000 0.0 0.0 0.00 3.36 R
6108 6838 0.464036 CAATTGCTGCCATGCCTCAT 59.536 50.000 0.0 0.0 0.00 2.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.110967 GCGACATGGCTGATGCTGT 61.111 57.895 0.00 0.00 39.59 4.40
21 22 0.098200 CGACATGGCTGATGCTGTTG 59.902 55.000 0.00 0.00 39.59 3.33
69 96 3.943034 CGCCGGTTGCAACAACGA 61.943 61.111 29.55 0.00 41.33 3.85
72 99 2.330041 CGGTTGCAACAACGACCC 59.670 61.111 29.55 10.71 40.55 4.46
142 173 2.357517 CCAGGTGTGACTGCGACC 60.358 66.667 0.00 0.00 37.16 4.79
146 177 3.986006 GTGTGACTGCGACCGGGA 61.986 66.667 6.32 0.00 0.00 5.14
180 211 1.973281 CGCATGCTTGACCAGGGTT 60.973 57.895 17.13 0.00 0.00 4.11
181 212 0.676466 CGCATGCTTGACCAGGGTTA 60.676 55.000 17.13 0.00 0.00 2.85
182 213 1.544724 GCATGCTTGACCAGGGTTAA 58.455 50.000 11.37 0.00 0.00 2.01
194 225 6.811954 TGACCAGGGTTAAAAGATTTGTTTC 58.188 36.000 0.00 0.00 0.00 2.78
200 231 4.538917 GTTAAAAGATTTGTTTCGCGGGA 58.461 39.130 6.13 0.00 0.00 5.14
231 276 2.364002 GGTTGGCTCAGGCTTTGTTTAA 59.636 45.455 0.00 0.00 38.73 1.52
245 290 3.629438 TGTTTAAGTTTAAGCGGTGCC 57.371 42.857 0.00 0.00 0.00 5.01
249 306 4.454717 GTTTAAGCGGTGCCGGCG 62.455 66.667 23.90 8.96 40.19 6.46
269 326 1.613437 GGCTCTCAGATCTGCTCTACC 59.387 57.143 18.36 11.18 31.13 3.18
270 327 2.305928 GCTCTCAGATCTGCTCTACCA 58.694 52.381 18.36 0.00 31.13 3.25
281 338 5.330455 TCTGCTCTACCATTTGTCTACTG 57.670 43.478 0.00 0.00 0.00 2.74
287 349 5.801380 TCTACCATTTGTCTACTGGTTTCC 58.199 41.667 1.87 0.00 40.34 3.13
295 357 2.163010 GTCTACTGGTTTCCGACGATGA 59.837 50.000 0.00 0.00 0.00 2.92
299 361 2.196749 CTGGTTTCCGACGATGATGAG 58.803 52.381 0.00 0.00 0.00 2.90
301 363 0.572590 GTTTCCGACGATGATGAGCG 59.427 55.000 0.00 0.00 36.91 5.03
303 365 2.954020 TTCCGACGATGATGAGCGGC 62.954 60.000 0.00 0.00 41.61 6.53
304 366 2.026734 CGACGATGATGAGCGGCT 59.973 61.111 0.00 0.00 36.63 5.52
307 369 2.026734 CGATGATGAGCGGCTCGT 59.973 61.111 23.90 23.90 32.35 4.18
311 373 0.599466 ATGATGAGCGGCTCGTGATG 60.599 55.000 28.15 0.00 32.35 3.07
312 374 2.587194 ATGAGCGGCTCGTGATGC 60.587 61.111 23.14 0.00 32.35 3.91
313 375 4.819761 TGAGCGGCTCGTGATGCC 62.820 66.667 23.72 0.00 46.42 4.40
331 789 2.778679 GCTTGACGCGTGGCTTAG 59.221 61.111 20.70 7.40 0.00 2.18
333 791 1.566018 GCTTGACGCGTGGCTTAGTT 61.566 55.000 20.70 0.00 0.00 2.24
334 792 0.865769 CTTGACGCGTGGCTTAGTTT 59.134 50.000 20.70 0.00 0.00 2.66
335 793 2.063266 CTTGACGCGTGGCTTAGTTTA 58.937 47.619 20.70 0.00 0.00 2.01
337 795 1.000060 TGACGCGTGGCTTAGTTTACT 60.000 47.619 20.70 0.00 0.00 2.24
338 796 1.389106 GACGCGTGGCTTAGTTTACTG 59.611 52.381 20.70 0.00 0.00 2.74
340 798 2.030007 ACGCGTGGCTTAGTTTACTGTA 60.030 45.455 12.93 0.00 0.00 2.74
392 869 2.768344 CCCCGGGCAGGACTACAT 60.768 66.667 17.73 0.00 45.00 2.29
393 870 1.458777 CCCCGGGCAGGACTACATA 60.459 63.158 17.73 0.00 45.00 2.29
394 871 1.746517 CCCGGGCAGGACTACATAC 59.253 63.158 8.08 0.00 45.00 2.39
395 872 1.046472 CCCGGGCAGGACTACATACA 61.046 60.000 8.08 0.00 45.00 2.29
396 873 0.389391 CCGGGCAGGACTACATACAG 59.611 60.000 0.00 0.00 45.00 2.74
397 874 0.389391 CGGGCAGGACTACATACAGG 59.611 60.000 0.00 0.00 0.00 4.00
398 875 0.759346 GGGCAGGACTACATACAGGG 59.241 60.000 0.00 0.00 0.00 4.45
399 876 0.759346 GGCAGGACTACATACAGGGG 59.241 60.000 0.00 0.00 0.00 4.79
400 877 0.106894 GCAGGACTACATACAGGGGC 59.893 60.000 0.00 0.00 0.00 5.80
401 878 1.496060 CAGGACTACATACAGGGGCA 58.504 55.000 0.00 0.00 0.00 5.36
402 879 1.139058 CAGGACTACATACAGGGGCAC 59.861 57.143 0.00 0.00 0.00 5.01
403 880 0.104304 GGACTACATACAGGGGCACG 59.896 60.000 0.00 0.00 0.00 5.34
404 881 1.108776 GACTACATACAGGGGCACGA 58.891 55.000 0.00 0.00 0.00 4.35
405 882 1.067212 GACTACATACAGGGGCACGAG 59.933 57.143 0.00 0.00 0.00 4.18
406 883 0.249489 CTACATACAGGGGCACGAGC 60.249 60.000 0.00 0.00 41.10 5.03
407 884 2.011741 TACATACAGGGGCACGAGCG 62.012 60.000 0.00 0.00 43.41 5.03
408 885 3.849951 ATACAGGGGCACGAGCGG 61.850 66.667 0.00 0.00 43.41 5.52
470 953 0.467474 ATCTATGGCTCCGTCGGACA 60.467 55.000 10.71 8.57 0.00 4.02
471 954 1.065928 CTATGGCTCCGTCGGACAC 59.934 63.158 10.71 6.69 0.00 3.67
472 955 1.663379 CTATGGCTCCGTCGGACACA 61.663 60.000 10.71 12.56 0.00 3.72
473 956 1.040893 TATGGCTCCGTCGGACACAT 61.041 55.000 22.48 22.48 31.10 3.21
474 957 2.202756 GGCTCCGTCGGACACATC 60.203 66.667 10.71 0.00 0.00 3.06
475 958 2.711922 GGCTCCGTCGGACACATCT 61.712 63.158 10.71 0.00 0.00 2.90
476 959 1.517257 GCTCCGTCGGACACATCTG 60.517 63.158 10.71 0.00 0.00 2.90
478 961 2.184322 CCGTCGGACACATCTGGG 59.816 66.667 4.91 0.00 0.00 4.45
479 962 2.348104 CCGTCGGACACATCTGGGA 61.348 63.158 4.91 0.00 0.00 4.37
480 963 1.153823 CGTCGGACACATCTGGGAC 60.154 63.158 9.10 0.00 0.00 4.46
483 1012 0.536724 TCGGACACATCTGGGACATG 59.463 55.000 0.00 0.00 38.20 3.21
484 1013 0.462581 CGGACACATCTGGGACATGG 60.463 60.000 0.00 0.00 38.20 3.66
488 1017 1.003580 ACACATCTGGGACATGGTCAC 59.996 52.381 0.00 0.00 38.20 3.67
489 1018 0.620556 ACATCTGGGACATGGTCACC 59.379 55.000 0.00 0.00 34.65 4.02
490 1019 0.462581 CATCTGGGACATGGTCACCG 60.463 60.000 0.00 0.00 34.65 4.94
495 1024 0.810031 GGGACATGGTCACCGAATCG 60.810 60.000 0.00 0.00 33.68 3.34
496 1025 0.108329 GGACATGGTCACCGAATCGT 60.108 55.000 0.82 0.00 33.68 3.73
497 1026 0.999406 GACATGGTCACCGAATCGTG 59.001 55.000 0.82 0.41 32.09 4.35
504 1033 1.206578 CACCGAATCGTGGCACAAC 59.793 57.895 19.09 4.51 44.16 3.32
509 1038 1.225855 GAATCGTGGCACAACAGTGA 58.774 50.000 19.09 5.76 44.16 3.41
516 1045 0.165944 GGCACAACAGTGATGCGTAC 59.834 55.000 0.00 0.00 40.37 3.67
518 1047 1.507562 CACAACAGTGATGCGTACCA 58.492 50.000 0.00 0.00 35.24 3.25
519 1048 1.194547 CACAACAGTGATGCGTACCAC 59.805 52.381 0.00 0.00 35.24 4.16
520 1049 1.070134 ACAACAGTGATGCGTACCACT 59.930 47.619 0.00 0.00 43.73 4.00
521 1050 2.297880 ACAACAGTGATGCGTACCACTA 59.702 45.455 0.00 0.00 41.26 2.74
522 1051 2.649331 ACAGTGATGCGTACCACTAC 57.351 50.000 0.00 0.00 41.26 2.73
524 1053 3.349927 ACAGTGATGCGTACCACTACTA 58.650 45.455 0.00 0.00 41.26 1.82
529 1058 1.548081 TGCGTACCACTACTAGGCAA 58.452 50.000 0.00 0.00 33.28 4.52
530 1059 2.104967 TGCGTACCACTACTAGGCAAT 58.895 47.619 0.00 0.00 33.28 3.56
531 1060 2.159156 TGCGTACCACTACTAGGCAATG 60.159 50.000 0.00 0.00 33.28 2.82
532 1061 2.159142 GCGTACCACTACTAGGCAATGT 60.159 50.000 0.00 0.00 0.00 2.71
534 1063 2.961526 ACCACTACTAGGCAATGTCG 57.038 50.000 0.00 0.00 0.00 4.35
535 1064 1.480954 ACCACTACTAGGCAATGTCGG 59.519 52.381 0.00 0.00 0.00 4.79
536 1065 1.571919 CACTACTAGGCAATGTCGGC 58.428 55.000 0.00 0.00 0.00 5.54
537 1066 1.137086 CACTACTAGGCAATGTCGGCT 59.863 52.381 0.00 0.00 45.09 5.52
538 1067 2.361119 CACTACTAGGCAATGTCGGCTA 59.639 50.000 0.00 0.00 42.62 3.93
540 1069 2.533266 ACTAGGCAATGTCGGCTATG 57.467 50.000 0.00 0.00 42.52 2.23
542 1071 2.224066 ACTAGGCAATGTCGGCTATGTC 60.224 50.000 0.00 0.00 42.52 3.06
543 1072 0.530650 AGGCAATGTCGGCTATGTCG 60.531 55.000 0.00 0.00 40.56 4.35
544 1073 1.498865 GGCAATGTCGGCTATGTCGG 61.499 60.000 0.00 0.00 0.00 4.79
545 1074 1.934463 CAATGTCGGCTATGTCGGC 59.066 57.895 0.00 0.00 35.15 5.54
547 1076 2.183300 TGTCGGCTATGTCGGCAC 59.817 61.111 0.00 0.00 41.29 5.01
548 1077 2.585247 GTCGGCTATGTCGGCACC 60.585 66.667 0.00 0.00 34.53 5.01
549 1078 3.071837 TCGGCTATGTCGGCACCA 61.072 61.111 0.00 0.00 0.00 4.17
550 1079 2.586079 CGGCTATGTCGGCACCAG 60.586 66.667 0.00 0.00 0.00 4.00
551 1080 2.897350 GGCTATGTCGGCACCAGC 60.897 66.667 15.28 15.28 41.10 4.85
552 1081 3.264897 GCTATGTCGGCACCAGCG 61.265 66.667 9.42 0.00 43.41 5.18
553 1082 3.264897 CTATGTCGGCACCAGCGC 61.265 66.667 0.00 0.00 43.41 5.92
554 1083 4.075854 TATGTCGGCACCAGCGCA 62.076 61.111 11.47 0.00 43.41 6.09
569 1098 2.815211 GCAGCGCATTCGTCTCCA 60.815 61.111 11.47 0.00 38.14 3.86
575 1104 0.926155 CGCATTCGTCTCCATGACAG 59.074 55.000 0.00 0.00 45.60 3.51
579 1108 2.347697 TTCGTCTCCATGACAGAACG 57.652 50.000 0.00 2.86 45.60 3.95
582 1111 0.388649 GTCTCCATGACAGAACGCGT 60.389 55.000 5.58 5.58 44.73 6.01
585 1114 1.733041 CCATGACAGAACGCGTCGT 60.733 57.895 14.44 10.82 43.97 4.34
587 1116 0.729478 CATGACAGAACGCGTCGTCT 60.729 55.000 26.48 19.16 39.99 4.18
591 1120 0.454620 ACAGAACGCGTCGTCTCATC 60.455 55.000 14.44 4.10 39.99 2.92
592 1121 0.179187 CAGAACGCGTCGTCTCATCT 60.179 55.000 14.44 6.92 39.99 2.90
593 1122 0.097325 AGAACGCGTCGTCTCATCTC 59.903 55.000 14.44 2.33 39.99 2.75
594 1123 1.188769 GAACGCGTCGTCTCATCTCG 61.189 60.000 14.44 0.00 39.99 4.04
595 1124 1.909141 AACGCGTCGTCTCATCTCGT 61.909 55.000 14.44 0.00 39.99 4.18
596 1125 1.930188 CGCGTCGTCTCATCTCGTG 60.930 63.158 0.00 0.00 0.00 4.35
597 1126 1.134901 GCGTCGTCTCATCTCGTGT 59.865 57.895 0.00 0.00 0.00 4.49
598 1127 1.128724 GCGTCGTCTCATCTCGTGTG 61.129 60.000 0.00 0.00 0.00 3.82
599 1128 1.128724 CGTCGTCTCATCTCGTGTGC 61.129 60.000 0.00 0.00 0.00 4.57
600 1129 0.109735 GTCGTCTCATCTCGTGTGCA 60.110 55.000 0.00 0.00 0.00 4.57
601 1130 0.811281 TCGTCTCATCTCGTGTGCAT 59.189 50.000 0.00 0.00 0.00 3.96
602 1131 1.195347 CGTCTCATCTCGTGTGCATC 58.805 55.000 0.00 0.00 0.00 3.91
603 1132 1.468054 CGTCTCATCTCGTGTGCATCA 60.468 52.381 0.00 0.00 0.00 3.07
605 1134 1.134995 TCTCATCTCGTGTGCATCACC 60.135 52.381 11.99 0.00 43.51 4.02
606 1135 0.108186 TCATCTCGTGTGCATCACCC 60.108 55.000 11.99 0.00 43.51 4.61
607 1136 0.391528 CATCTCGTGTGCATCACCCA 60.392 55.000 11.99 0.00 43.51 4.51
608 1137 0.107993 ATCTCGTGTGCATCACCCAG 60.108 55.000 11.99 9.09 43.51 4.45
609 1138 1.004560 CTCGTGTGCATCACCCAGT 60.005 57.895 11.99 0.00 43.51 4.00
610 1139 0.246360 CTCGTGTGCATCACCCAGTA 59.754 55.000 11.99 0.00 43.51 2.74
611 1140 0.037697 TCGTGTGCATCACCCAGTAC 60.038 55.000 11.99 0.00 43.51 2.73
618 1147 2.367202 ATCACCCAGTACCCAGCGG 61.367 63.158 0.00 0.00 0.00 5.52
620 1149 3.319198 ACCCAGTACCCAGCGGTG 61.319 66.667 7.86 7.86 44.40 4.94
621 1150 3.319198 CCCAGTACCCAGCGGTGT 61.319 66.667 14.40 0.00 44.40 4.16
623 1152 1.217244 CCAGTACCCAGCGGTGTAC 59.783 63.158 14.40 10.31 44.40 2.90
624 1153 1.255667 CCAGTACCCAGCGGTGTACT 61.256 60.000 14.40 12.45 46.43 2.73
625 1154 1.466856 CAGTACCCAGCGGTGTACTA 58.533 55.000 14.40 0.00 44.33 1.82
626 1155 2.029623 CAGTACCCAGCGGTGTACTAT 58.970 52.381 14.40 0.00 44.33 2.12
627 1156 3.216800 CAGTACCCAGCGGTGTACTATA 58.783 50.000 14.40 0.00 44.33 1.31
628 1157 3.004106 CAGTACCCAGCGGTGTACTATAC 59.996 52.174 14.40 8.09 44.33 1.47
631 1160 1.340248 CCCAGCGGTGTACTATACCAG 59.660 57.143 14.40 0.00 38.11 4.00
632 1161 2.304092 CCAGCGGTGTACTATACCAGA 58.696 52.381 14.40 0.00 38.11 3.86
634 1163 2.950309 CAGCGGTGTACTATACCAGAGT 59.050 50.000 6.41 0.00 38.11 3.24
635 1164 3.003482 CAGCGGTGTACTATACCAGAGTC 59.997 52.174 6.41 0.00 38.11 3.36
636 1165 2.292845 GCGGTGTACTATACCAGAGTCC 59.707 54.545 3.16 0.00 38.11 3.85
638 1167 3.564644 CGGTGTACTATACCAGAGTCCAG 59.435 52.174 3.16 0.00 38.11 3.86
640 1169 4.579753 GGTGTACTATACCAGAGTCCAGAC 59.420 50.000 0.00 0.00 38.12 3.51
641 1170 5.438833 GTGTACTATACCAGAGTCCAGACT 58.561 45.833 0.00 0.00 45.84 3.24
642 1171 6.409005 GGTGTACTATACCAGAGTCCAGACTA 60.409 46.154 0.00 0.00 38.76 2.59
644 1173 6.614496 TGTACTATACCAGAGTCCAGACTAGA 59.386 42.308 0.00 0.00 42.66 2.43
645 1174 6.182507 ACTATACCAGAGTCCAGACTAGAG 57.817 45.833 0.00 0.00 42.66 2.43
647 1176 2.280103 ACCAGAGTCCAGACTAGAGGA 58.720 52.381 15.55 0.00 42.66 3.71
649 1178 2.241176 CCAGAGTCCAGACTAGAGGAGT 59.759 54.545 0.00 3.68 42.66 3.85
650 1179 3.456644 CCAGAGTCCAGACTAGAGGAGTA 59.543 52.174 0.00 0.00 42.66 2.59
651 1180 4.448210 CAGAGTCCAGACTAGAGGAGTAC 58.552 52.174 0.00 0.00 42.66 2.73
653 1182 4.080751 AGAGTCCAGACTAGAGGAGTACAC 60.081 50.000 0.00 0.00 42.66 2.90
654 1183 2.937799 GTCCAGACTAGAGGAGTACACG 59.062 54.545 0.00 0.00 39.06 4.49
655 1184 1.671845 CCAGACTAGAGGAGTACACGC 59.328 57.143 0.00 0.00 39.06 5.34
656 1185 1.328069 CAGACTAGAGGAGTACACGCG 59.672 57.143 3.53 3.53 39.06 6.01
657 1186 0.656785 GACTAGAGGAGTACACGCGG 59.343 60.000 12.47 1.27 39.06 6.46
658 1187 1.355916 CTAGAGGAGTACACGCGGC 59.644 63.158 12.47 0.00 0.00 6.53
659 1188 2.376231 CTAGAGGAGTACACGCGGCG 62.376 65.000 22.36 22.36 0.00 6.46
660 1189 4.849329 GAGGAGTACACGCGGCGG 62.849 72.222 27.37 17.33 0.00 6.13
676 1205 2.032681 GGCACGCACCTCCTTTCT 59.967 61.111 0.00 0.00 0.00 2.52
677 1206 2.035442 GGCACGCACCTCCTTTCTC 61.035 63.158 0.00 0.00 0.00 2.87
678 1207 2.383527 GCACGCACCTCCTTTCTCG 61.384 63.158 0.00 0.00 0.00 4.04
679 1208 2.048127 ACGCACCTCCTTTCTCGC 60.048 61.111 0.00 0.00 0.00 5.03
680 1209 3.181967 CGCACCTCCTTTCTCGCG 61.182 66.667 0.00 0.00 36.47 5.87
681 1210 2.048127 GCACCTCCTTTCTCGCGT 60.048 61.111 5.77 0.00 0.00 6.01
682 1211 2.383527 GCACCTCCTTTCTCGCGTG 61.384 63.158 5.77 3.13 0.00 5.34
683 1212 1.289066 CACCTCCTTTCTCGCGTGA 59.711 57.895 5.77 6.33 0.00 4.35
684 1213 0.108615 CACCTCCTTTCTCGCGTGAT 60.109 55.000 12.14 0.00 0.00 3.06
685 1214 0.608640 ACCTCCTTTCTCGCGTGATT 59.391 50.000 12.14 0.00 0.00 2.57
686 1215 1.002087 ACCTCCTTTCTCGCGTGATTT 59.998 47.619 12.14 0.00 0.00 2.17
687 1216 2.076863 CCTCCTTTCTCGCGTGATTTT 58.923 47.619 12.14 0.00 0.00 1.82
688 1217 2.484264 CCTCCTTTCTCGCGTGATTTTT 59.516 45.455 12.14 0.00 0.00 1.94
719 1248 1.994399 ATAATCCCAACCTCCCACCA 58.006 50.000 0.00 0.00 0.00 4.17
725 1254 1.039856 CCAACCTCCCACCACAAAAG 58.960 55.000 0.00 0.00 0.00 2.27
726 1255 1.039856 CAACCTCCCACCACAAAAGG 58.960 55.000 0.00 0.00 0.00 3.11
727 1256 0.759060 AACCTCCCACCACAAAAGGC 60.759 55.000 0.00 0.00 0.00 4.35
778 1318 2.675658 AAATAACCCATCCCCATCCG 57.324 50.000 0.00 0.00 0.00 4.18
789 1329 4.592192 CCATCCGCCGTCGCATCT 62.592 66.667 0.00 0.00 34.03 2.90
790 1330 3.032609 CATCCGCCGTCGCATCTC 61.033 66.667 0.00 0.00 34.03 2.75
791 1331 3.527427 ATCCGCCGTCGCATCTCA 61.527 61.111 0.00 0.00 34.03 3.27
793 1333 4.498520 CCGCCGTCGCATCTCACT 62.499 66.667 0.00 0.00 34.03 3.41
794 1334 3.250323 CGCCGTCGCATCTCACTG 61.250 66.667 0.00 0.00 34.03 3.66
796 1336 2.182791 CCGTCGCATCTCACTGCT 59.817 61.111 0.00 0.00 40.06 4.24
798 1338 1.875813 CGTCGCATCTCACTGCTCC 60.876 63.158 0.00 0.00 40.06 4.70
799 1339 1.216444 GTCGCATCTCACTGCTCCA 59.784 57.895 0.00 0.00 40.06 3.86
800 1340 1.080995 GTCGCATCTCACTGCTCCAC 61.081 60.000 0.00 0.00 40.06 4.02
801 1341 1.079612 CGCATCTCACTGCTCCACA 60.080 57.895 0.00 0.00 40.06 4.17
826 1386 5.336213 GCAAACTGATTCATTCATCCACTGT 60.336 40.000 0.00 0.00 32.72 3.55
829 1389 3.688235 TGATTCATTCATCCACTGTGCA 58.312 40.909 1.29 0.00 0.00 4.57
874 1446 3.408634 CCGCTCTTTTCCCTTCTGTTAA 58.591 45.455 0.00 0.00 0.00 2.01
976 1565 2.047655 GCCACCACGTGATTCCGA 60.048 61.111 19.30 0.00 35.23 4.55
978 1567 2.100631 CCACCACGTGATTCCGAGC 61.101 63.158 19.30 0.00 35.23 5.03
1453 2064 3.075005 TCTTCCTCTTCCCGGCCG 61.075 66.667 21.04 21.04 0.00 6.13
1454 2065 3.075005 CTTCCTCTTCCCGGCCGA 61.075 66.667 30.73 3.89 0.00 5.54
1673 2350 0.322816 AGCCACACCAACCATGCTAG 60.323 55.000 0.00 0.00 0.00 3.42
1674 2351 1.937546 GCCACACCAACCATGCTAGC 61.938 60.000 8.10 8.10 0.00 3.42
1788 2468 3.730761 CAACCGCTGCAGCCTCAC 61.731 66.667 32.07 5.62 37.91 3.51
1797 2477 1.900498 GCAGCCTCACCAAGTTGCT 60.900 57.895 0.00 0.00 33.30 3.91
1805 2485 2.421424 CTCACCAAGTTGCTTCCTATGC 59.579 50.000 0.00 0.00 0.00 3.14
1806 2486 1.131126 CACCAAGTTGCTTCCTATGCG 59.869 52.381 0.00 0.00 0.00 4.73
1807 2487 0.099436 CCAAGTTGCTTCCTATGCGC 59.901 55.000 0.00 0.00 0.00 6.09
1808 2488 0.099436 CAAGTTGCTTCCTATGCGCC 59.901 55.000 4.18 0.00 0.00 6.53
1809 2489 1.369091 AAGTTGCTTCCTATGCGCCG 61.369 55.000 4.18 0.00 0.00 6.46
1810 2490 3.202001 TTGCTTCCTATGCGCCGC 61.202 61.111 4.18 0.00 0.00 6.53
1917 2597 0.615850 AGCCTCAGGTTGCCTCTTAC 59.384 55.000 0.00 0.00 0.00 2.34
2199 2888 0.037326 TTTCTGCAGGTACAGAGCGG 60.037 55.000 15.13 0.36 46.85 5.52
2203 2892 1.003718 GCAGGTACAGAGCGGGTTT 60.004 57.895 0.00 0.00 0.00 3.27
2265 2954 2.158957 TGATCCGAATTACAGGGTGCTC 60.159 50.000 0.00 0.00 0.00 4.26
2442 3131 2.607187 CCAACACTGAGGTACGATGAC 58.393 52.381 0.00 0.00 0.00 3.06
2447 3136 2.103373 ACTGAGGTACGATGACTGCAT 58.897 47.619 0.00 0.00 37.47 3.96
2595 3284 1.447317 AACAACAGGTTCCAGCTGCG 61.447 55.000 8.66 1.56 46.94 5.18
2656 3348 1.903294 GAGAGCACAGCAGGGATGA 59.097 57.895 0.00 0.00 0.00 2.92
2799 3491 4.651503 TCAAATGGAGTTTTTGTAGGGCAA 59.348 37.500 0.00 0.00 35.90 4.52
2898 3590 0.322816 TCCTGGCAAATGGAGTCAGC 60.323 55.000 0.00 0.00 0.00 4.26
2976 3668 6.430007 AGAAGAACCAATTGGAGAATATGCT 58.570 36.000 31.22 8.37 38.94 3.79
3204 3896 3.671702 GCACTAGCAATGCTTTTCCTGTC 60.672 47.826 14.85 0.00 40.44 3.51
3249 3941 6.542005 ACAATGTTGTGAGACATACTGAACAA 59.458 34.615 0.00 0.00 39.25 2.83
3276 3968 0.443869 CCTCTCGAAATGTTGGTGCG 59.556 55.000 0.00 0.00 0.00 5.34
3295 3987 2.798680 CGAACAACGTCTATCCTGAGG 58.201 52.381 0.00 0.00 37.22 3.86
3298 3990 4.142534 CGAACAACGTCTATCCTGAGGTTA 60.143 45.833 0.00 0.00 41.29 2.85
3805 4497 7.985752 GCAAAGGTTGGTACAGTATACTATCTT 59.014 37.037 4.74 0.00 42.39 2.40
4047 4740 5.183713 CACAAAGATTTGCCTGGAGATGTAA 59.816 40.000 0.00 0.00 41.79 2.41
4095 4788 6.701400 TGGCAATTCTTTCTTTTCTTTGTAGC 59.299 34.615 0.00 0.00 0.00 3.58
4112 4815 9.371136 TCTTTGTAGCTTGATCAGTTGTAATAG 57.629 33.333 0.00 0.00 0.00 1.73
4114 4817 8.479313 TTGTAGCTTGATCAGTTGTAATAGTG 57.521 34.615 0.00 0.00 0.00 2.74
4220 4923 3.888934 CCTTCAGGTTGTTGACGATTTG 58.111 45.455 0.00 0.00 0.00 2.32
4238 4941 7.761409 ACGATTTGCAAGTTGATTATATGTGT 58.239 30.769 15.56 0.00 0.00 3.72
4430 5133 3.747193 CGATCGATGTTTTGTTGGGAAG 58.253 45.455 10.26 0.00 0.00 3.46
4715 5420 7.395190 TGCTCTATCTGTTTTGTGCAAATAT 57.605 32.000 0.00 0.00 0.00 1.28
4928 5634 1.059584 TGCAAGGTGAGGGTCTCCAA 61.060 55.000 0.00 0.00 32.69 3.53
4947 5653 0.898320 AACTCTCCATCTCACACCCG 59.102 55.000 0.00 0.00 0.00 5.28
5150 5856 5.297029 GGTTAAATGCCAGACACTAATCTCC 59.703 44.000 0.00 0.00 0.00 3.71
5264 5970 1.227764 CATCTAGTGCGCATGGCCT 60.228 57.895 15.91 8.67 42.61 5.19
5311 6028 5.888161 CCCTATTTTACCTTCACATGCTCTT 59.112 40.000 0.00 0.00 0.00 2.85
5411 6128 1.055849 ATGGCGCCATCATAGGTACA 58.944 50.000 36.10 6.63 29.42 2.90
5455 6172 2.019951 ACCGCAGTAAACGCACTCG 61.020 57.895 0.00 0.00 42.43 4.18
5482 6199 1.066143 TCGAGTCCAATGCCTCCTTTC 60.066 52.381 0.00 0.00 0.00 2.62
5511 6228 2.053627 GAACATTTCGCCAACTGCAAG 58.946 47.619 0.00 0.00 41.33 4.01
5537 6254 1.276989 GGGATCGTGAACAACACCCTA 59.723 52.381 0.00 0.00 45.73 3.53
5543 6260 2.030958 GAACAACACCCTACGGCCG 61.031 63.158 26.86 26.86 0.00 6.13
5611 6328 3.842923 CTGGTCAGCCGAGCCGAT 61.843 66.667 0.00 0.00 38.96 4.18
5676 6393 2.606519 CGACCTCCCCCACCAAGA 60.607 66.667 0.00 0.00 0.00 3.02
5680 6397 3.322466 CTCCCCCACCAAGACGCT 61.322 66.667 0.00 0.00 0.00 5.07
5708 6426 1.783071 AGTAGACTGCCCTTAGCTCC 58.217 55.000 0.00 0.00 44.23 4.70
5779 6502 0.191064 TAGGATAGAGCTGGTGGGGG 59.809 60.000 0.00 0.00 0.00 5.40
5790 6513 2.197324 GTGGGGGTTTGCCTGACA 59.803 61.111 0.00 0.00 34.45 3.58
5820 6543 4.697352 GTGGTGCTTTTAGACACTGATGAT 59.303 41.667 0.00 0.00 36.99 2.45
5821 6544 4.696877 TGGTGCTTTTAGACACTGATGATG 59.303 41.667 0.00 0.00 36.99 3.07
5822 6545 4.937620 GGTGCTTTTAGACACTGATGATGA 59.062 41.667 0.00 0.00 36.99 2.92
5855 6578 5.185454 TGAAATGTAAGAGCATGTACAGGG 58.815 41.667 9.91 1.13 33.89 4.45
5858 6581 2.168521 TGTAAGAGCATGTACAGGGAGC 59.831 50.000 9.91 6.94 0.00 4.70
5864 6587 3.391665 ATGTACAGGGAGCTGCCGC 62.392 63.158 19.62 10.99 37.63 6.53
5904 6627 0.325860 TTATGTACCGGCTCCTGGGT 60.326 55.000 0.00 0.00 40.35 4.51
5905 6628 1.046472 TATGTACCGGCTCCTGGGTG 61.046 60.000 0.00 0.00 37.09 4.61
5906 6629 4.468689 GTACCGGCTCCTGGGTGC 62.469 72.222 0.00 5.24 37.09 5.01
5927 6651 1.597027 CGGGACTTGTTTCCTGCGT 60.597 57.895 0.00 0.00 35.18 5.24
5931 6655 0.307760 GACTTGTTTCCTGCGTGTGG 59.692 55.000 0.00 0.00 0.00 4.17
5935 6659 1.593209 GTTTCCTGCGTGTGGTCGA 60.593 57.895 0.00 0.00 0.00 4.20
6066 6792 5.759506 TTTCAGCTGTAATGTTTCCGAAA 57.240 34.783 14.67 0.00 0.00 3.46
6108 6838 2.992124 TTCTCCCGTGTTTGTGAAGA 57.008 45.000 0.00 0.00 0.00 2.87
6163 7520 4.210331 AGCTGGGTTGATATTAGCTTTGG 58.790 43.478 0.00 0.00 41.60 3.28
6277 8248 9.131791 GTTAATATTTTAGGAGATGCCCAAGAA 57.868 33.333 0.00 0.00 37.37 2.52
6306 8367 2.173356 AGCTGAGGCATGGCAGTAATTA 59.827 45.455 22.64 0.00 41.70 1.40
6308 8369 3.544684 CTGAGGCATGGCAGTAATTACA 58.455 45.455 22.64 7.05 0.00 2.41
6309 8370 3.947196 CTGAGGCATGGCAGTAATTACAA 59.053 43.478 22.64 1.11 0.00 2.41
6310 8371 3.947196 TGAGGCATGGCAGTAATTACAAG 59.053 43.478 22.64 10.45 0.00 3.16
6311 8372 4.199310 GAGGCATGGCAGTAATTACAAGA 58.801 43.478 22.64 0.00 0.00 3.02
6313 8374 3.066760 GGCATGGCAGTAATTACAAGACC 59.933 47.826 17.65 12.40 0.00 3.85
6314 8375 3.947834 GCATGGCAGTAATTACAAGACCT 59.052 43.478 17.65 2.57 0.00 3.85
6316 8377 4.634012 TGGCAGTAATTACAAGACCTGT 57.366 40.909 17.65 0.00 42.47 4.00
6317 8378 4.323417 TGGCAGTAATTACAAGACCTGTG 58.677 43.478 17.65 5.74 39.20 3.66
6318 8379 3.127030 GGCAGTAATTACAAGACCTGTGC 59.873 47.826 17.65 14.25 39.20 4.57
6319 8380 3.181520 GCAGTAATTACAAGACCTGTGCG 60.182 47.826 17.65 0.00 39.20 5.34
6320 8381 4.242475 CAGTAATTACAAGACCTGTGCGA 58.758 43.478 17.65 0.00 39.20 5.10
6321 8382 4.870426 CAGTAATTACAAGACCTGTGCGAT 59.130 41.667 17.65 0.00 39.20 4.58
6322 8383 4.870426 AGTAATTACAAGACCTGTGCGATG 59.130 41.667 17.65 0.00 39.20 3.84
6323 8384 2.093306 TTACAAGACCTGTGCGATGG 57.907 50.000 0.00 0.00 39.20 3.51
6324 8385 0.973632 TACAAGACCTGTGCGATGGT 59.026 50.000 0.00 0.00 39.20 3.55
6325 8386 0.603707 ACAAGACCTGTGCGATGGTG 60.604 55.000 0.00 0.00 36.69 4.17
6326 8387 0.320683 CAAGACCTGTGCGATGGTGA 60.321 55.000 0.00 0.00 36.59 4.02
6327 8388 0.615331 AAGACCTGTGCGATGGTGAT 59.385 50.000 0.00 0.00 36.59 3.06
6329 8390 1.003580 AGACCTGTGCGATGGTGATTT 59.996 47.619 0.00 0.00 36.59 2.17
6331 8392 2.609459 GACCTGTGCGATGGTGATTTAG 59.391 50.000 0.00 0.00 36.59 1.85
6333 8394 2.283298 CTGTGCGATGGTGATTTAGCT 58.717 47.619 0.00 0.00 0.00 3.32
6338 8400 4.511454 GTGCGATGGTGATTTAGCTGATAA 59.489 41.667 0.00 0.00 0.00 1.75
6342 8410 5.985530 CGATGGTGATTTAGCTGATAACTCA 59.014 40.000 0.00 2.15 32.37 3.41
6343 8411 6.074088 CGATGGTGATTTAGCTGATAACTCAC 60.074 42.308 20.96 20.96 46.02 3.51
6346 8414 6.595772 GTGATTTAGCTGATAACTCACCTG 57.404 41.667 19.36 0.00 43.29 4.00
6348 8416 6.036517 GTGATTTAGCTGATAACTCACCTGTG 59.963 42.308 19.36 0.00 43.29 3.66
6356 8424 4.624364 CTCACCTGTGCCACCGCA 62.624 66.667 0.00 0.00 44.78 5.69
6370 8438 2.662596 CGCAAGGCACCTAGGACA 59.337 61.111 17.98 0.00 0.00 4.02
6371 8439 1.448540 CGCAAGGCACCTAGGACAG 60.449 63.158 17.98 6.01 0.00 3.51
6375 8443 4.840005 GGCACCTAGGACAGCCGC 62.840 72.222 17.98 7.57 39.96 6.53
6392 8460 2.099062 CGGCGAGCACAAGCATTC 59.901 61.111 0.00 0.00 45.49 2.67
6395 8463 1.580845 GGCGAGCACAAGCATTCAGT 61.581 55.000 0.00 0.00 45.49 3.41
6396 8464 0.239347 GCGAGCACAAGCATTCAGTT 59.761 50.000 0.00 0.00 45.49 3.16
6397 8465 1.727213 GCGAGCACAAGCATTCAGTTC 60.727 52.381 0.00 0.00 45.49 3.01
6565 8676 1.522569 CTAGGGTTTCTGCCTCCCG 59.477 63.158 0.00 0.00 45.27 5.14
6594 8705 2.601314 CGGCGTCGATTTGTCTCATTTA 59.399 45.455 1.44 0.00 39.00 1.40
6619 8730 3.179265 CTTAGGGTCACGTGCGCG 61.179 66.667 19.78 19.78 44.93 6.86
6643 8754 2.124151 ATCATGTCCCTTGCCGGC 60.124 61.111 22.73 22.73 0.00 6.13
6645 8756 2.288642 ATCATGTCCCTTGCCGGCAT 62.289 55.000 33.25 10.98 0.00 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.721231 GCAGGAGCACAAACGCAA 59.279 55.556 0.00 0.00 41.58 4.85
59 64 2.897846 CGTGGGGTCGTTGTTGCA 60.898 61.111 0.00 0.00 0.00 4.08
60 65 2.589442 TCGTGGGGTCGTTGTTGC 60.589 61.111 0.00 0.00 0.00 4.17
61 66 2.591311 CGTCGTGGGGTCGTTGTTG 61.591 63.158 0.00 0.00 0.00 3.33
63 68 4.955774 GCGTCGTGGGGTCGTTGT 62.956 66.667 0.00 0.00 0.00 3.32
64 69 4.657824 AGCGTCGTGGGGTCGTTG 62.658 66.667 0.00 0.00 0.00 4.10
180 211 4.515944 TCTTCCCGCGAAACAAATCTTTTA 59.484 37.500 8.23 0.00 0.00 1.52
181 212 3.316868 TCTTCCCGCGAAACAAATCTTTT 59.683 39.130 8.23 0.00 0.00 2.27
182 213 2.882137 TCTTCCCGCGAAACAAATCTTT 59.118 40.909 8.23 0.00 0.00 2.52
200 231 1.968540 GAGCCAACCGCAGCTTCTT 60.969 57.895 0.00 0.00 40.11 2.52
212 246 3.295973 ACTTAAACAAAGCCTGAGCCAA 58.704 40.909 0.00 0.00 41.25 4.52
231 276 3.053896 GCCGGCACCGCTTAAACT 61.054 61.111 24.80 0.00 38.24 2.66
245 290 2.027314 CAGATCTGAGAGCCGCCG 59.973 66.667 18.34 0.00 0.00 6.46
249 306 1.613437 GGTAGAGCAGATCTGAGAGCC 59.387 57.143 27.04 15.70 39.20 4.70
269 326 3.122948 CGTCGGAAACCAGTAGACAAATG 59.877 47.826 0.00 0.00 32.57 2.32
270 327 3.006110 TCGTCGGAAACCAGTAGACAAAT 59.994 43.478 0.00 0.00 32.57 2.32
281 338 0.931005 GCTCATCATCGTCGGAAACC 59.069 55.000 0.00 0.00 0.00 3.27
287 349 2.013483 GAGCCGCTCATCATCGTCG 61.013 63.158 15.78 0.00 0.00 5.12
295 357 2.587194 GCATCACGAGCCGCTCAT 60.587 61.111 20.22 1.37 0.00 2.90
303 365 2.792290 CGTCAAGCGGCATCACGAG 61.792 63.158 0.00 0.00 36.85 4.18
304 366 2.809174 CGTCAAGCGGCATCACGA 60.809 61.111 0.00 0.00 36.85 4.35
314 376 1.566018 AACTAAGCCACGCGTCAAGC 61.566 55.000 9.86 13.53 43.95 4.01
315 377 0.865769 AAACTAAGCCACGCGTCAAG 59.134 50.000 9.86 1.65 0.00 3.02
316 378 1.794116 GTAAACTAAGCCACGCGTCAA 59.206 47.619 9.86 0.00 0.00 3.18
350 823 3.044305 GCACGCAGACCACCTCAC 61.044 66.667 0.00 0.00 0.00 3.51
375 852 1.458777 TATGTAGTCCTGCCCGGGG 60.459 63.158 25.28 9.31 0.00 5.73
386 863 1.112113 CTCGTGCCCCTGTATGTAGT 58.888 55.000 0.00 0.00 0.00 2.73
454 937 1.040893 ATGTGTCCGACGGAGCCATA 61.041 55.000 18.98 11.58 29.39 2.74
455 938 2.298158 GATGTGTCCGACGGAGCCAT 62.298 60.000 18.98 20.86 29.39 4.40
459 942 1.139734 CCAGATGTGTCCGACGGAG 59.860 63.158 18.98 3.19 29.39 4.63
463 946 0.537188 ATGTCCCAGATGTGTCCGAC 59.463 55.000 0.00 0.00 0.00 4.79
466 949 0.620556 ACCATGTCCCAGATGTGTCC 59.379 55.000 0.00 0.00 0.00 4.02
470 953 0.620556 GGTGACCATGTCCCAGATGT 59.379 55.000 0.00 0.00 0.00 3.06
471 954 0.462581 CGGTGACCATGTCCCAGATG 60.463 60.000 1.11 0.00 0.00 2.90
472 955 0.617535 TCGGTGACCATGTCCCAGAT 60.618 55.000 1.11 0.00 0.00 2.90
473 956 0.834261 TTCGGTGACCATGTCCCAGA 60.834 55.000 1.11 0.00 0.00 3.86
474 957 0.253044 ATTCGGTGACCATGTCCCAG 59.747 55.000 1.11 0.00 0.00 4.45
475 958 0.251916 GATTCGGTGACCATGTCCCA 59.748 55.000 1.11 0.00 0.00 4.37
476 959 0.810031 CGATTCGGTGACCATGTCCC 60.810 60.000 1.11 0.00 0.00 4.46
478 961 0.999406 CACGATTCGGTGACCATGTC 59.001 55.000 11.29 0.00 40.38 3.06
479 962 0.391130 CCACGATTCGGTGACCATGT 60.391 55.000 11.29 0.00 40.38 3.21
480 963 1.705337 GCCACGATTCGGTGACCATG 61.705 60.000 11.29 0.00 40.38 3.66
483 1012 2.047655 TGCCACGATTCGGTGACC 60.048 61.111 11.29 0.00 40.38 4.02
484 1013 1.225376 TTGTGCCACGATTCGGTGAC 61.225 55.000 11.29 2.38 40.38 3.67
488 1017 1.227999 ACTGTTGTGCCACGATTCGG 61.228 55.000 11.29 0.00 0.00 4.30
489 1018 0.110688 CACTGTTGTGCCACGATTCG 60.111 55.000 4.14 4.14 37.38 3.34
490 1019 1.225855 TCACTGTTGTGCCACGATTC 58.774 50.000 0.00 0.00 43.49 2.52
495 1024 1.081906 CGCATCACTGTTGTGCCAC 60.082 57.895 8.15 0.00 43.49 5.01
496 1025 0.250081 TACGCATCACTGTTGTGCCA 60.250 50.000 8.15 0.00 43.49 4.92
497 1026 0.165944 GTACGCATCACTGTTGTGCC 59.834 55.000 8.15 0.00 43.49 5.01
504 1033 2.941453 AGTAGTGGTACGCATCACTG 57.059 50.000 11.96 0.00 43.24 3.66
509 1038 1.771565 TGCCTAGTAGTGGTACGCAT 58.228 50.000 0.00 0.00 44.14 4.73
516 1045 1.806623 GCCGACATTGCCTAGTAGTGG 60.807 57.143 0.00 0.00 0.00 4.00
518 1047 1.486211 AGCCGACATTGCCTAGTAGT 58.514 50.000 0.00 0.00 0.00 2.73
519 1048 3.005897 ACATAGCCGACATTGCCTAGTAG 59.994 47.826 0.00 0.00 0.00 2.57
520 1049 2.963101 ACATAGCCGACATTGCCTAGTA 59.037 45.455 0.00 0.00 0.00 1.82
521 1050 1.762957 ACATAGCCGACATTGCCTAGT 59.237 47.619 0.00 0.00 0.00 2.57
522 1051 2.408050 GACATAGCCGACATTGCCTAG 58.592 52.381 0.00 0.00 0.00 3.02
524 1053 0.530650 CGACATAGCCGACATTGCCT 60.531 55.000 0.00 0.00 0.00 4.75
529 1058 1.227263 GTGCCGACATAGCCGACAT 60.227 57.895 0.00 0.00 0.00 3.06
530 1059 2.183300 GTGCCGACATAGCCGACA 59.817 61.111 0.00 0.00 0.00 4.35
531 1060 2.585247 GGTGCCGACATAGCCGAC 60.585 66.667 0.00 0.00 0.00 4.79
532 1061 3.071837 TGGTGCCGACATAGCCGA 61.072 61.111 0.00 0.00 0.00 5.54
534 1063 2.897350 GCTGGTGCCGACATAGCC 60.897 66.667 0.52 0.00 34.55 3.93
535 1064 3.264897 CGCTGGTGCCGACATAGC 61.265 66.667 1.73 1.73 36.23 2.97
536 1065 3.264897 GCGCTGGTGCCGACATAG 61.265 66.667 0.00 0.00 35.36 2.23
537 1066 4.075854 TGCGCTGGTGCCGACATA 62.076 61.111 9.73 0.00 35.36 2.29
551 1080 3.918220 GGAGACGAATGCGCTGCG 61.918 66.667 19.17 19.17 42.48 5.18
552 1081 2.176273 ATGGAGACGAATGCGCTGC 61.176 57.895 9.73 0.00 42.48 5.25
553 1082 0.807275 TCATGGAGACGAATGCGCTG 60.807 55.000 9.73 0.00 42.48 5.18
554 1083 0.807667 GTCATGGAGACGAATGCGCT 60.808 55.000 9.73 0.00 42.48 5.92
555 1084 1.638467 GTCATGGAGACGAATGCGC 59.362 57.895 0.00 0.00 42.48 6.09
565 1094 1.406219 CGACGCGTTCTGTCATGGAG 61.406 60.000 15.53 0.00 36.11 3.86
566 1095 1.443702 CGACGCGTTCTGTCATGGA 60.444 57.895 15.53 0.00 36.11 3.41
569 1098 0.454620 GAGACGACGCGTTCTGTCAT 60.455 55.000 29.23 19.47 41.37 3.06
575 1104 1.188769 CGAGATGAGACGACGCGTTC 61.189 60.000 15.53 8.26 41.37 3.95
579 1108 1.128724 CACACGAGATGAGACGACGC 61.129 60.000 0.00 0.00 0.00 5.19
582 1111 0.811281 ATGCACACGAGATGAGACGA 59.189 50.000 0.00 0.00 0.00 4.20
585 1114 2.284263 GTGATGCACACGAGATGAGA 57.716 50.000 0.00 0.00 39.78 3.27
595 1124 1.130678 TGGGTACTGGGTGATGCACA 61.131 55.000 0.00 0.00 35.86 4.57
596 1125 0.392998 CTGGGTACTGGGTGATGCAC 60.393 60.000 0.00 0.00 0.00 4.57
597 1126 1.990424 CTGGGTACTGGGTGATGCA 59.010 57.895 0.00 0.00 0.00 3.96
598 1127 1.452108 GCTGGGTACTGGGTGATGC 60.452 63.158 0.00 0.00 0.00 3.91
599 1128 1.153369 CGCTGGGTACTGGGTGATG 60.153 63.158 0.00 0.00 0.00 3.07
600 1129 2.367202 CCGCTGGGTACTGGGTGAT 61.367 63.158 0.00 0.00 0.00 3.06
601 1130 3.000819 CCGCTGGGTACTGGGTGA 61.001 66.667 0.00 0.00 0.00 4.02
611 1140 1.340248 CTGGTATAGTACACCGCTGGG 59.660 57.143 0.00 0.00 39.04 4.45
618 1147 5.438833 AGTCTGGACTCTGGTATAGTACAC 58.561 45.833 0.00 0.00 36.92 2.90
620 1149 7.065120 TCTAGTCTGGACTCTGGTATAGTAC 57.935 44.000 6.52 0.00 42.54 2.73
621 1150 6.270463 CCTCTAGTCTGGACTCTGGTATAGTA 59.730 46.154 6.52 0.00 42.54 1.82
623 1152 5.308497 TCCTCTAGTCTGGACTCTGGTATAG 59.692 48.000 6.52 0.00 42.54 1.31
624 1153 5.225227 TCCTCTAGTCTGGACTCTGGTATA 58.775 45.833 6.52 0.00 42.54 1.47
625 1154 4.048600 TCCTCTAGTCTGGACTCTGGTAT 58.951 47.826 6.52 0.00 42.54 2.73
626 1155 3.456644 CTCCTCTAGTCTGGACTCTGGTA 59.543 52.174 6.52 0.00 42.54 3.25
627 1156 2.241176 CTCCTCTAGTCTGGACTCTGGT 59.759 54.545 6.52 0.00 42.54 4.00
628 1157 2.241176 ACTCCTCTAGTCTGGACTCTGG 59.759 54.545 6.52 8.04 42.54 3.86
631 1160 4.193865 GTGTACTCCTCTAGTCTGGACTC 58.806 52.174 6.52 0.00 42.54 3.36
632 1161 3.369681 CGTGTACTCCTCTAGTCTGGACT 60.370 52.174 8.36 8.36 45.02 3.85
634 1163 2.680221 GCGTGTACTCCTCTAGTCTGGA 60.680 54.545 0.00 0.00 39.80 3.86
635 1164 1.671845 GCGTGTACTCCTCTAGTCTGG 59.328 57.143 0.00 0.00 39.80 3.86
636 1165 1.328069 CGCGTGTACTCCTCTAGTCTG 59.672 57.143 0.00 0.00 39.80 3.51
638 1167 0.656785 CCGCGTGTACTCCTCTAGTC 59.343 60.000 4.92 0.00 39.80 2.59
640 1169 1.355916 GCCGCGTGTACTCCTCTAG 59.644 63.158 4.92 0.00 0.00 2.43
641 1170 2.466982 CGCCGCGTGTACTCCTCTA 61.467 63.158 4.92 0.00 0.00 2.43
642 1171 3.812019 CGCCGCGTGTACTCCTCT 61.812 66.667 4.92 0.00 0.00 3.69
658 1187 3.423154 GAAAGGAGGTGCGTGCCG 61.423 66.667 0.00 0.00 0.00 5.69
659 1188 2.032681 AGAAAGGAGGTGCGTGCC 59.967 61.111 0.00 0.00 0.00 5.01
660 1189 2.383527 CGAGAAAGGAGGTGCGTGC 61.384 63.158 0.00 0.00 0.00 5.34
661 1190 2.383527 GCGAGAAAGGAGGTGCGTG 61.384 63.158 0.00 0.00 0.00 5.34
662 1191 2.048127 GCGAGAAAGGAGGTGCGT 60.048 61.111 0.00 0.00 0.00 5.24
663 1192 3.181967 CGCGAGAAAGGAGGTGCG 61.182 66.667 0.00 0.00 39.57 5.34
664 1193 2.048127 ACGCGAGAAAGGAGGTGC 60.048 61.111 15.93 0.00 0.00 5.01
665 1194 0.108615 ATCACGCGAGAAAGGAGGTG 60.109 55.000 15.93 0.00 0.00 4.00
666 1195 0.608640 AATCACGCGAGAAAGGAGGT 59.391 50.000 15.93 0.00 0.00 3.85
667 1196 1.726853 AAATCACGCGAGAAAGGAGG 58.273 50.000 15.93 0.00 0.00 4.30
668 1197 3.813529 AAAAATCACGCGAGAAAGGAG 57.186 42.857 15.93 0.00 0.00 3.69
687 1216 6.949463 AGGTTGGGATTATTTAGTCGGAAAAA 59.051 34.615 0.00 0.00 0.00 1.94
688 1217 6.486941 AGGTTGGGATTATTTAGTCGGAAAA 58.513 36.000 0.00 0.00 0.00 2.29
689 1218 6.069705 AGGTTGGGATTATTTAGTCGGAAA 57.930 37.500 0.00 0.00 0.00 3.13
690 1219 5.397109 GGAGGTTGGGATTATTTAGTCGGAA 60.397 44.000 0.00 0.00 0.00 4.30
691 1220 4.102054 GGAGGTTGGGATTATTTAGTCGGA 59.898 45.833 0.00 0.00 0.00 4.55
692 1221 4.386711 GGAGGTTGGGATTATTTAGTCGG 58.613 47.826 0.00 0.00 0.00 4.79
693 1222 4.141574 TGGGAGGTTGGGATTATTTAGTCG 60.142 45.833 0.00 0.00 0.00 4.18
694 1223 5.131067 GTGGGAGGTTGGGATTATTTAGTC 58.869 45.833 0.00 0.00 0.00 2.59
695 1224 4.079385 GGTGGGAGGTTGGGATTATTTAGT 60.079 45.833 0.00 0.00 0.00 2.24
696 1225 4.079443 TGGTGGGAGGTTGGGATTATTTAG 60.079 45.833 0.00 0.00 0.00 1.85
700 1229 1.569072 GTGGTGGGAGGTTGGGATTAT 59.431 52.381 0.00 0.00 0.00 1.28
736 1272 2.111041 CGGAAACCGTAGACCGTATC 57.889 55.000 1.80 0.00 42.73 2.24
749 1285 4.577693 GGGATGGGTTATTTAGTCGGAAAC 59.422 45.833 0.00 0.00 0.00 2.78
750 1286 4.385532 GGGGATGGGTTATTTAGTCGGAAA 60.386 45.833 0.00 0.00 0.00 3.13
751 1287 3.136992 GGGGATGGGTTATTTAGTCGGAA 59.863 47.826 0.00 0.00 0.00 4.30
752 1288 2.707257 GGGGATGGGTTATTTAGTCGGA 59.293 50.000 0.00 0.00 0.00 4.55
754 1290 3.849563 TGGGGATGGGTTATTTAGTCG 57.150 47.619 0.00 0.00 0.00 4.18
755 1291 4.663334 GGATGGGGATGGGTTATTTAGTC 58.337 47.826 0.00 0.00 0.00 2.59
756 1292 3.073946 CGGATGGGGATGGGTTATTTAGT 59.926 47.826 0.00 0.00 0.00 2.24
757 1293 3.686016 CGGATGGGGATGGGTTATTTAG 58.314 50.000 0.00 0.00 0.00 1.85
758 1294 2.224917 GCGGATGGGGATGGGTTATTTA 60.225 50.000 0.00 0.00 0.00 1.40
759 1295 1.480498 GCGGATGGGGATGGGTTATTT 60.480 52.381 0.00 0.00 0.00 1.40
760 1296 0.112412 GCGGATGGGGATGGGTTATT 59.888 55.000 0.00 0.00 0.00 1.40
761 1297 1.767692 GCGGATGGGGATGGGTTAT 59.232 57.895 0.00 0.00 0.00 1.89
778 1318 3.558411 GCAGTGAGATGCGACGGC 61.558 66.667 0.00 0.00 36.28 5.68
794 1334 1.881973 TGAATCAGTTTGCTGTGGAGC 59.118 47.619 0.00 0.00 46.44 4.70
796 1336 4.143543 TGAATGAATCAGTTTGCTGTGGA 58.856 39.130 0.00 0.00 43.05 4.02
798 1338 5.100259 GGATGAATGAATCAGTTTGCTGTG 58.900 41.667 0.00 0.00 42.53 3.66
799 1339 4.768448 TGGATGAATGAATCAGTTTGCTGT 59.232 37.500 0.00 0.00 42.53 4.40
800 1340 5.100259 GTGGATGAATGAATCAGTTTGCTG 58.900 41.667 0.00 0.00 42.53 4.41
801 1341 5.014858 AGTGGATGAATGAATCAGTTTGCT 58.985 37.500 0.00 0.00 42.53 3.91
804 1344 5.336213 GCACAGTGGATGAATGAATCAGTTT 60.336 40.000 1.84 0.00 42.53 2.66
805 1345 4.157289 GCACAGTGGATGAATGAATCAGTT 59.843 41.667 1.84 0.00 42.53 3.16
806 1346 3.693085 GCACAGTGGATGAATGAATCAGT 59.307 43.478 1.84 0.00 42.53 3.41
807 1347 3.692593 TGCACAGTGGATGAATGAATCAG 59.307 43.478 1.84 0.00 42.53 2.90
809 1349 3.693085 AGTGCACAGTGGATGAATGAATC 59.307 43.478 21.04 0.00 0.00 2.52
810 1350 3.693085 GAGTGCACAGTGGATGAATGAAT 59.307 43.478 21.04 0.00 0.00 2.57
811 1351 3.076621 GAGTGCACAGTGGATGAATGAA 58.923 45.455 21.04 0.00 0.00 2.57
812 1352 2.616256 GGAGTGCACAGTGGATGAATGA 60.616 50.000 21.04 0.00 0.00 2.57
826 1386 1.338973 GTTATATCGGACCGGAGTGCA 59.661 52.381 15.25 0.00 33.05 4.57
829 1389 2.236766 CTGGTTATATCGGACCGGAGT 58.763 52.381 15.25 3.28 43.59 3.85
857 1417 3.811083 TGCGTTAACAGAAGGGAAAAGA 58.189 40.909 6.39 0.00 0.00 2.52
860 1420 1.877443 GCTGCGTTAACAGAAGGGAAA 59.123 47.619 6.39 0.00 40.25 3.13
862 1422 0.321298 GGCTGCGTTAACAGAAGGGA 60.321 55.000 6.39 0.00 40.25 4.20
864 1424 1.635663 CGGGCTGCGTTAACAGAAGG 61.636 60.000 6.39 0.00 40.25 3.46
901 1480 1.533033 TCCTCCTGTCTGTCCGCAA 60.533 57.895 0.00 0.00 0.00 4.85
902 1481 2.117423 TCCTCCTGTCTGTCCGCA 59.883 61.111 0.00 0.00 0.00 5.69
908 1487 1.694150 TCCAACTTGTCCTCCTGTCTG 59.306 52.381 0.00 0.00 0.00 3.51
910 1489 2.930826 TTCCAACTTGTCCTCCTGTC 57.069 50.000 0.00 0.00 0.00 3.51
962 1550 2.264794 GGCTCGGAATCACGTGGT 59.735 61.111 17.00 5.26 34.94 4.16
1226 1825 3.197790 CCTTGCGCATGAGGTCCG 61.198 66.667 23.56 2.93 0.00 4.79
1293 1904 3.766691 TACTTGACGAGCGCCCCC 61.767 66.667 2.29 0.00 0.00 5.40
1543 2208 4.373116 GGAGTTGTGCGCGGAGGA 62.373 66.667 8.83 0.00 0.00 3.71
1788 2468 0.099436 GCGCATAGGAAGCAACTTGG 59.901 55.000 0.30 0.00 0.00 3.61
1791 2471 1.815421 CGGCGCATAGGAAGCAACT 60.815 57.895 10.83 0.00 0.00 3.16
1934 2620 0.704076 ATAAGAAGCAACCTGGGGCA 59.296 50.000 13.89 0.00 0.00 5.36
1935 2621 1.106285 CATAAGAAGCAACCTGGGGC 58.894 55.000 0.00 0.99 0.00 5.80
1937 2623 0.734889 CGCATAAGAAGCAACCTGGG 59.265 55.000 0.00 0.00 0.00 4.45
1938 2624 0.099436 GCGCATAAGAAGCAACCTGG 59.901 55.000 0.30 0.00 0.00 4.45
1939 2625 0.099436 GGCGCATAAGAAGCAACCTG 59.901 55.000 10.83 0.00 0.00 4.00
1940 2626 1.369091 CGGCGCATAAGAAGCAACCT 61.369 55.000 10.83 0.00 0.00 3.50
1941 2627 1.062525 CGGCGCATAAGAAGCAACC 59.937 57.895 10.83 0.00 0.00 3.77
2130 2819 1.252215 TGGTCGCCATGGAGTTCGTA 61.252 55.000 18.40 0.00 0.00 3.43
2133 2822 2.100631 CGTGGTCGCCATGGAGTTC 61.101 63.158 18.40 10.21 36.92 3.01
2196 2885 2.159382 TGAAGATTCTCCAAAACCCGC 58.841 47.619 0.00 0.00 0.00 6.13
2265 2954 1.163554 GAAGCTCTGAAAGTGGCTGG 58.836 55.000 0.00 0.00 41.35 4.85
2358 3047 1.740025 GTTATCACTGGTGAGCTTGCC 59.260 52.381 9.33 0.00 43.61 4.52
2595 3284 6.821665 TGTAATTAGCAGATGTTACTGGAACC 59.178 38.462 0.00 0.00 37.22 3.62
2656 3348 4.962362 AGAAAGTTTTGGATCAAACTGGGT 59.038 37.500 10.89 2.17 32.79 4.51
2799 3491 2.591715 GCAAGCGTGTGTGGAGGT 60.592 61.111 0.59 0.00 0.00 3.85
2954 3646 6.189859 TGAGCATATTCTCCAATTGGTTCTT 58.810 36.000 23.76 10.50 36.34 2.52
2996 3688 2.791383 AGCATCGATAGCTCTGACAC 57.209 50.000 14.17 0.00 38.01 3.67
3204 3896 6.995091 CATTGTCCTCTAGGATAAAAGAAGGG 59.005 42.308 11.62 0.00 46.11 3.95
3249 3941 0.905357 CATTTCGAGAGGGAGGTGGT 59.095 55.000 0.00 0.00 0.00 4.16
3276 3968 3.870633 ACCTCAGGATAGACGTTGTTC 57.129 47.619 0.00 0.00 0.00 3.18
3295 3987 3.545703 ACATACTTGGCTGCTGGATAAC 58.454 45.455 0.00 0.00 0.00 1.89
3298 3990 2.814805 AACATACTTGGCTGCTGGAT 57.185 45.000 0.00 0.00 0.00 3.41
3886 4579 6.228273 TCAGAGACAAAATCAAATGACGAC 57.772 37.500 0.00 0.00 0.00 4.34
4114 4817 8.268738 GCGCATCCTGAACAAAATAAATAAATC 58.731 33.333 0.30 0.00 0.00 2.17
4220 4923 6.473455 GGAAAGCACACATATAATCAACTTGC 59.527 38.462 0.00 0.00 0.00 4.01
4238 4941 7.555914 TGTATTTAGAAGTGCATATGGAAAGCA 59.444 33.333 4.56 0.00 35.63 3.91
4256 4959 9.924650 GTAGGTAAGGGTGATGTATGTATTTAG 57.075 37.037 0.00 0.00 0.00 1.85
4358 5061 4.096382 CCTCTCCATTTTCCATGGTAAACG 59.904 45.833 17.69 10.49 40.06 3.60
4430 5133 2.394563 GCGCTGTTCCTCAGAAGGC 61.395 63.158 0.00 0.00 46.27 4.35
4499 5202 4.053295 GCAGGTACGACAAAGTTAGAACA 58.947 43.478 0.00 0.00 0.00 3.18
4788 5494 4.735578 GCAACATCCATCACAATTAGCAGG 60.736 45.833 0.00 0.00 0.00 4.85
4791 5497 4.374843 TGCAACATCCATCACAATTAGC 57.625 40.909 0.00 0.00 0.00 3.09
4928 5634 0.898320 CGGGTGTGAGATGGAGAGTT 59.102 55.000 0.00 0.00 0.00 3.01
4947 5653 7.698836 AGTTGACAAAATATGCAGAAAACAC 57.301 32.000 0.00 0.00 0.00 3.32
4983 5689 4.693283 TGCTGTTATAAGGATTGTCCGAG 58.307 43.478 0.00 0.00 42.75 4.63
5264 5970 2.774234 GAGAAGTGGATCATGGGAAGGA 59.226 50.000 0.00 0.00 0.00 3.36
5311 6028 1.202486 AGAAGACGTCGACCTGCAAAA 60.202 47.619 10.58 0.00 0.00 2.44
5393 6110 0.105964 GTGTACCTATGATGGCGCCA 59.894 55.000 34.80 34.80 0.00 5.69
5411 6128 2.638480 TACAGCAGAGGTTTGCAAGT 57.362 45.000 0.00 0.00 46.47 3.16
5455 6172 1.401539 GGCATTGGACTCGAAACAAGC 60.402 52.381 0.00 0.00 0.00 4.01
5482 6199 4.424061 TGGCGAAATGTTCAGAGAAATG 57.576 40.909 0.00 0.00 0.00 2.32
5511 6228 0.605319 TTGTTCACGATCCCACCTGC 60.605 55.000 0.00 0.00 0.00 4.85
5680 6397 1.079819 GCAGTCTACTTCTGCGGCA 60.080 57.895 1.29 1.29 46.39 5.69
5708 6426 6.929049 TCTATATTTTCCCTTGCTCATGTACG 59.071 38.462 0.00 0.00 0.00 3.67
5779 6502 3.004024 CACATGAAGTGTCAGGCAAAC 57.996 47.619 0.00 0.00 43.40 2.93
5790 6513 4.275936 GTGTCTAAAAGCACCACATGAAGT 59.724 41.667 0.00 0.00 0.00 3.01
5820 6543 7.717875 TGCTCTTACATTTCATCATCATCATCA 59.282 33.333 0.00 0.00 0.00 3.07
5821 6544 8.095937 TGCTCTTACATTTCATCATCATCATC 57.904 34.615 0.00 0.00 0.00 2.92
5822 6545 8.515414 CATGCTCTTACATTTCATCATCATCAT 58.485 33.333 0.00 0.00 0.00 2.45
5864 6587 1.081509 CATTCACCAACCGTTGCCG 60.082 57.895 5.68 0.00 0.00 5.69
5870 6593 4.142773 GGTACATAACACATTCACCAACCG 60.143 45.833 0.00 0.00 0.00 4.44
5904 6627 1.072505 GGAAACAAGTCCCGGAGCA 59.927 57.895 0.73 0.00 0.00 4.26
5905 6628 0.955919 CAGGAAACAAGTCCCGGAGC 60.956 60.000 0.73 0.00 38.59 4.70
5906 6629 0.955919 GCAGGAAACAAGTCCCGGAG 60.956 60.000 0.73 0.00 38.59 4.63
5927 6651 0.950555 GCTTCTGCACATCGACCACA 60.951 55.000 0.00 0.00 39.41 4.17
5931 6655 2.084844 CAGGCTTCTGCACATCGAC 58.915 57.895 0.00 0.00 41.91 4.20
6066 6792 1.152963 ACCAAGCGCAAACCAGAGT 60.153 52.632 11.47 0.00 0.00 3.24
6108 6838 0.464036 CAATTGCTGCCATGCCTCAT 59.536 50.000 0.00 0.00 0.00 2.90
6163 7520 2.776312 CATGAGCTTGCATGTGATCC 57.224 50.000 7.14 0.00 40.52 3.36
6231 7588 5.780958 AACCCCATATAATCTAAGAGGGC 57.219 43.478 0.00 0.00 36.74 5.19
6277 8248 2.928334 CCATGCCTCAGCTAAATCACT 58.072 47.619 0.00 0.00 40.80 3.41
6306 8367 0.603707 CACCATCGCACAGGTCTTGT 60.604 55.000 0.00 0.00 41.94 3.16
6308 8369 0.615331 ATCACCATCGCACAGGTCTT 59.385 50.000 0.00 0.00 35.52 3.01
6309 8370 0.615331 AATCACCATCGCACAGGTCT 59.385 50.000 0.00 0.00 35.52 3.85
6310 8371 1.453155 AAATCACCATCGCACAGGTC 58.547 50.000 0.00 0.00 35.52 3.85
6311 8372 2.632377 CTAAATCACCATCGCACAGGT 58.368 47.619 0.00 0.00 39.10 4.00
6313 8374 2.031314 CAGCTAAATCACCATCGCACAG 59.969 50.000 0.00 0.00 0.00 3.66
6314 8375 2.009051 CAGCTAAATCACCATCGCACA 58.991 47.619 0.00 0.00 0.00 4.57
6316 8377 2.689553 TCAGCTAAATCACCATCGCA 57.310 45.000 0.00 0.00 0.00 5.10
6317 8378 4.752101 AGTTATCAGCTAAATCACCATCGC 59.248 41.667 0.00 0.00 0.00 4.58
6318 8379 5.985530 TGAGTTATCAGCTAAATCACCATCG 59.014 40.000 0.00 0.00 38.97 3.84
6333 8394 1.003118 GGTGGCACAGGTGAGTTATCA 59.997 52.381 20.82 0.00 41.80 2.15
6338 8400 4.626081 GCGGTGGCACAGGTGAGT 62.626 66.667 20.82 0.00 41.80 3.41
6356 8424 2.660064 CGGCTGTCCTAGGTGCCTT 61.660 63.158 27.39 0.00 42.90 4.35
6358 8426 4.840005 GCGGCTGTCCTAGGTGCC 62.840 72.222 23.63 23.63 41.76 5.01
6375 8443 2.099062 GAATGCTTGTGCTCGCCG 59.901 61.111 0.00 0.00 40.48 6.46
6376 8444 1.136147 CTGAATGCTTGTGCTCGCC 59.864 57.895 0.00 0.00 40.48 5.54
6378 8446 1.135859 GGAACTGAATGCTTGTGCTCG 60.136 52.381 0.00 0.00 40.48 5.03
6379 8447 1.200948 GGGAACTGAATGCTTGTGCTC 59.799 52.381 0.00 0.00 40.48 4.26
6381 8449 0.961019 TGGGAACTGAATGCTTGTGC 59.039 50.000 0.00 0.00 40.20 4.57
6382 8450 2.821378 TCATGGGAACTGAATGCTTGTG 59.179 45.455 0.00 0.00 0.00 3.33
6385 8453 2.429610 GCATCATGGGAACTGAATGCTT 59.570 45.455 4.89 0.00 30.90 3.91
6387 8455 2.029623 AGCATCATGGGAACTGAATGC 58.970 47.619 4.11 4.11 32.31 3.56
6388 8456 2.289820 CGAGCATCATGGGAACTGAATG 59.710 50.000 0.00 0.00 33.17 2.67
6389 8457 2.092753 ACGAGCATCATGGGAACTGAAT 60.093 45.455 0.00 0.00 33.17 2.57
6390 8458 1.278985 ACGAGCATCATGGGAACTGAA 59.721 47.619 0.00 0.00 33.17 3.02
6391 8459 0.904649 ACGAGCATCATGGGAACTGA 59.095 50.000 0.00 0.00 33.17 3.41
6392 8460 1.293924 GACGAGCATCATGGGAACTG 58.706 55.000 0.00 0.00 33.17 3.16
6395 8463 1.143838 CCGACGAGCATCATGGGAA 59.856 57.895 0.00 0.00 33.17 3.97
6396 8464 1.738346 CTCCGACGAGCATCATGGGA 61.738 60.000 0.00 0.00 33.17 4.37
6397 8465 1.300465 CTCCGACGAGCATCATGGG 60.300 63.158 0.00 0.00 33.17 4.00
6614 8725 2.819154 CATGATCCACCACGCGCA 60.819 61.111 5.73 0.00 0.00 6.09
6629 8740 2.440796 CATGCCGGCAAGGGACAT 60.441 61.111 36.33 12.84 45.60 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.