Multiple sequence alignment - TraesCS7D01G146200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G146200 chr7D 100.000 3259 0 0 1 3259 93604695 93607953 0.000000e+00 6019.0
1 TraesCS7D01G146200 chr2D 97.493 2712 44 8 566 3259 568357754 568355049 0.000000e+00 4610.0
2 TraesCS7D01G146200 chr2D 92.286 2528 117 40 563 3063 624287168 624289644 0.000000e+00 3517.0
3 TraesCS7D01G146200 chr2D 92.009 2528 134 35 563 3063 547546097 547543611 0.000000e+00 3487.0
4 TraesCS7D01G146200 chr2D 91.970 2528 135 34 562 3063 489934894 489932409 0.000000e+00 3482.0
5 TraesCS7D01G146200 chr2D 97.404 809 14 2 2452 3259 513032267 513031465 0.000000e+00 1371.0
6 TraesCS7D01G146200 chr2D 97.786 768 10 2 2452 3218 7523832 7523071 0.000000e+00 1317.0
7 TraesCS7D01G146200 chr2D 96.717 792 13 2 2452 3230 147379714 147378923 0.000000e+00 1306.0
8 TraesCS7D01G146200 chr5D 96.166 2739 47 12 562 3259 494245453 494242732 0.000000e+00 4423.0
9 TraesCS7D01G146200 chr5D 92.487 2529 121 35 562 3063 545533143 545535629 0.000000e+00 3554.0
10 TraesCS7D01G146200 chr5D 91.734 992 66 14 563 1550 114472345 114471366 0.000000e+00 1363.0
11 TraesCS7D01G146200 chrUn 97.845 2181 26 9 563 2739 241687727 241685564 0.000000e+00 3747.0
12 TraesCS7D01G146200 chrUn 91.339 2517 133 42 563 3063 70158593 70156146 0.000000e+00 3362.0
13 TraesCS7D01G146200 chr6D 97.845 2181 26 9 563 2739 470067183 470065020 0.000000e+00 3747.0
14 TraesCS7D01G146200 chr6D 95.796 999 26 4 563 1550 175423683 175424676 0.000000e+00 1598.0
15 TraesCS7D01G146200 chr6D 96.352 603 12 1 563 1165 61166208 61165616 0.000000e+00 983.0
16 TraesCS7D01G146200 chr6D 88.364 275 26 6 559 830 447818010 447818281 3.140000e-85 326.0
17 TraesCS7D01G146200 chr4A 94.685 1731 69 16 1543 3259 521946202 521947923 0.000000e+00 2665.0
18 TraesCS7D01G146200 chr2A 95.276 1524 53 11 1549 3063 461393312 461394825 0.000000e+00 2398.0
19 TraesCS7D01G146200 chr3D 96.200 1000 26 2 562 1550 523400410 523401408 0.000000e+00 1626.0
20 TraesCS7D01G146200 chr3D 96.200 1000 25 3 563 1550 20288618 20289616 0.000000e+00 1624.0
21 TraesCS7D01G146200 chr3D 97.753 178 4 0 3082 3259 160919492 160919669 1.140000e-79 307.0
22 TraesCS7D01G146200 chr3D 97.191 178 5 0 3082 3259 523402979 523403156 5.280000e-78 302.0
23 TraesCS7D01G146200 chr3D 90.789 228 17 4 563 787 523407676 523407450 5.280000e-78 302.0
24 TraesCS7D01G146200 chr3D 96.629 178 6 0 3082 3259 20291187 20291364 2.460000e-76 296.0
25 TraesCS7D01G146200 chr7B 92.056 428 25 6 2632 3056 591180864 591181285 7.790000e-166 593.0
26 TraesCS7D01G146200 chr7B 84.712 556 23 19 63 563 46770230 46770778 1.750000e-137 499.0
27 TraesCS7D01G146200 chr7A 86.059 581 31 18 23 563 96085912 96086482 2.180000e-161 579.0
28 TraesCS7D01G146200 chr7A 79.494 395 33 28 23 390 95813332 95813705 1.510000e-58 237.0
29 TraesCS7D01G146200 chr3A 86.486 481 39 16 2768 3234 573966704 573966236 3.750000e-139 505.0
30 TraesCS7D01G146200 chr2B 95.122 41 2 0 3061 3101 750451984 750451944 7.550000e-07 65.8
31 TraesCS7D01G146200 chr5B 94.872 39 2 0 3061 3099 69033659 69033697 9.760000e-06 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G146200 chr7D 93604695 93607953 3258 False 6019 6019 100.0000 1 3259 1 chr7D.!!$F1 3258
1 TraesCS7D01G146200 chr2D 568355049 568357754 2705 True 4610 4610 97.4930 566 3259 1 chr2D.!!$R6 2693
2 TraesCS7D01G146200 chr2D 624287168 624289644 2476 False 3517 3517 92.2860 563 3063 1 chr2D.!!$F1 2500
3 TraesCS7D01G146200 chr2D 547543611 547546097 2486 True 3487 3487 92.0090 563 3063 1 chr2D.!!$R5 2500
4 TraesCS7D01G146200 chr2D 489932409 489934894 2485 True 3482 3482 91.9700 562 3063 1 chr2D.!!$R3 2501
5 TraesCS7D01G146200 chr2D 513031465 513032267 802 True 1371 1371 97.4040 2452 3259 1 chr2D.!!$R4 807
6 TraesCS7D01G146200 chr2D 7523071 7523832 761 True 1317 1317 97.7860 2452 3218 1 chr2D.!!$R1 766
7 TraesCS7D01G146200 chr2D 147378923 147379714 791 True 1306 1306 96.7170 2452 3230 1 chr2D.!!$R2 778
8 TraesCS7D01G146200 chr5D 494242732 494245453 2721 True 4423 4423 96.1660 562 3259 1 chr5D.!!$R2 2697
9 TraesCS7D01G146200 chr5D 545533143 545535629 2486 False 3554 3554 92.4870 562 3063 1 chr5D.!!$F1 2501
10 TraesCS7D01G146200 chr5D 114471366 114472345 979 True 1363 1363 91.7340 563 1550 1 chr5D.!!$R1 987
11 TraesCS7D01G146200 chrUn 241685564 241687727 2163 True 3747 3747 97.8450 563 2739 1 chrUn.!!$R2 2176
12 TraesCS7D01G146200 chrUn 70156146 70158593 2447 True 3362 3362 91.3390 563 3063 1 chrUn.!!$R1 2500
13 TraesCS7D01G146200 chr6D 470065020 470067183 2163 True 3747 3747 97.8450 563 2739 1 chr6D.!!$R2 2176
14 TraesCS7D01G146200 chr6D 175423683 175424676 993 False 1598 1598 95.7960 563 1550 1 chr6D.!!$F1 987
15 TraesCS7D01G146200 chr6D 61165616 61166208 592 True 983 983 96.3520 563 1165 1 chr6D.!!$R1 602
16 TraesCS7D01G146200 chr4A 521946202 521947923 1721 False 2665 2665 94.6850 1543 3259 1 chr4A.!!$F1 1716
17 TraesCS7D01G146200 chr2A 461393312 461394825 1513 False 2398 2398 95.2760 1549 3063 1 chr2A.!!$F1 1514
18 TraesCS7D01G146200 chr3D 523400410 523403156 2746 False 964 1626 96.6955 562 3259 2 chr3D.!!$F3 2697
19 TraesCS7D01G146200 chr3D 20288618 20291364 2746 False 960 1624 96.4145 563 3259 2 chr3D.!!$F2 2696
20 TraesCS7D01G146200 chr7B 46770230 46770778 548 False 499 499 84.7120 63 563 1 chr7B.!!$F1 500
21 TraesCS7D01G146200 chr7A 96085912 96086482 570 False 579 579 86.0590 23 563 1 chr7A.!!$F2 540

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
82 83 0.032813 AATACAAGGGCCTGCTGCAT 60.033 50.0 6.92 0.0 43.89 3.96 F
207 208 0.035152 TGGACAGTGCTGCTAATGGG 60.035 55.0 0.00 0.0 0.00 4.00 F
319 320 0.036388 GCCAACCTGACGGATCTCAA 60.036 55.0 0.00 0.0 0.00 3.02 F
424 425 0.108329 CACCACCACCTACCGTGATC 60.108 60.0 0.00 0.0 46.20 2.92 F
491 492 0.112218 TAGCAACTTGGCCCACATGT 59.888 50.0 0.00 0.0 38.94 3.21 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1042 1144 2.045465 ACTAGCACCTAACCCTAACCCT 59.955 50.000 0.0 0.0 0.0 4.34 R
1043 1145 2.475155 ACTAGCACCTAACCCTAACCC 58.525 52.381 0.0 0.0 0.0 4.11 R
1673 1822 4.161189 ACACCACAATTCACACCATTTTCA 59.839 37.500 0.0 0.0 0.0 2.69 R
2219 2515 4.940654 GCCTTGATTTGCTCTAACTTCTCT 59.059 41.667 0.0 0.0 0.0 3.10 R
2428 2749 6.653020 AGCATAAGAGATCCATTACAACACA 58.347 36.000 0.0 0.0 0.0 3.72 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.751518 TGACCTGGGAGTTTCTTAAAGC 58.248 45.455 0.00 0.00 0.00 3.51
54 55 4.130281 GCCGTTGCACGCTCGTAC 62.130 66.667 0.00 0.00 40.91 3.67
58 59 0.986270 CGTTGCACGCTCGTACATAA 59.014 50.000 0.00 0.00 33.65 1.90
59 60 1.007422 CGTTGCACGCTCGTACATAAG 60.007 52.381 0.00 0.00 33.65 1.73
60 61 1.990563 GTTGCACGCTCGTACATAAGT 59.009 47.619 0.00 0.00 0.00 2.24
61 62 1.624487 TGCACGCTCGTACATAAGTG 58.376 50.000 0.00 0.00 0.00 3.16
62 63 0.297820 GCACGCTCGTACATAAGTGC 59.702 55.000 14.63 14.63 46.03 4.40
63 64 1.624487 CACGCTCGTACATAAGTGCA 58.376 50.000 0.00 0.00 0.00 4.57
64 65 1.989864 CACGCTCGTACATAAGTGCAA 59.010 47.619 0.00 0.00 0.00 4.08
65 66 2.603110 CACGCTCGTACATAAGTGCAAT 59.397 45.455 0.00 0.00 0.00 3.56
66 67 3.794564 CACGCTCGTACATAAGTGCAATA 59.205 43.478 0.00 0.00 0.00 1.90
67 68 3.795101 ACGCTCGTACATAAGTGCAATAC 59.205 43.478 0.00 0.00 0.00 1.89
68 69 3.794564 CGCTCGTACATAAGTGCAATACA 59.205 43.478 0.00 0.00 0.00 2.29
69 70 4.266739 CGCTCGTACATAAGTGCAATACAA 59.733 41.667 0.00 0.00 0.00 2.41
70 71 5.554510 CGCTCGTACATAAGTGCAATACAAG 60.555 44.000 0.00 0.00 0.00 3.16
71 72 5.276868 GCTCGTACATAAGTGCAATACAAGG 60.277 44.000 0.00 0.00 0.00 3.61
72 73 5.113383 TCGTACATAAGTGCAATACAAGGG 58.887 41.667 0.00 0.00 0.00 3.95
73 74 4.260620 CGTACATAAGTGCAATACAAGGGC 60.261 45.833 0.00 0.00 0.00 5.19
74 75 3.023832 ACATAAGTGCAATACAAGGGCC 58.976 45.455 0.00 0.00 0.00 5.80
75 76 3.290710 CATAAGTGCAATACAAGGGCCT 58.709 45.455 0.00 0.00 0.00 5.19
76 77 1.549203 AAGTGCAATACAAGGGCCTG 58.451 50.000 6.92 3.83 0.00 4.85
77 78 0.967380 AGTGCAATACAAGGGCCTGC 60.967 55.000 6.92 6.51 0.00 4.85
78 79 0.967380 GTGCAATACAAGGGCCTGCT 60.967 55.000 6.92 0.00 34.10 4.24
79 80 0.966875 TGCAATACAAGGGCCTGCTG 60.967 55.000 6.92 4.95 34.10 4.41
80 81 1.811860 CAATACAAGGGCCTGCTGC 59.188 57.895 6.92 0.00 40.16 5.25
81 82 0.966875 CAATACAAGGGCCTGCTGCA 60.967 55.000 6.92 0.88 43.89 4.41
82 83 0.032813 AATACAAGGGCCTGCTGCAT 60.033 50.000 6.92 0.00 43.89 3.96
83 84 0.846015 ATACAAGGGCCTGCTGCATA 59.154 50.000 6.92 0.00 43.89 3.14
84 85 0.846015 TACAAGGGCCTGCTGCATAT 59.154 50.000 6.92 0.00 43.89 1.78
85 86 0.754217 ACAAGGGCCTGCTGCATATG 60.754 55.000 6.92 0.42 43.89 1.78
86 87 0.466739 CAAGGGCCTGCTGCATATGA 60.467 55.000 6.92 0.00 43.89 2.15
87 88 0.481567 AAGGGCCTGCTGCATATGAT 59.518 50.000 6.92 0.00 43.89 2.45
88 89 1.365293 AGGGCCTGCTGCATATGATA 58.635 50.000 4.50 0.00 43.89 2.15
89 90 1.921049 AGGGCCTGCTGCATATGATAT 59.079 47.619 4.50 0.00 43.89 1.63
90 91 2.022195 GGGCCTGCTGCATATGATATG 58.978 52.381 6.97 8.06 43.89 1.78
91 92 2.356432 GGGCCTGCTGCATATGATATGA 60.356 50.000 16.22 1.29 43.89 2.15
92 93 2.943690 GGCCTGCTGCATATGATATGAG 59.056 50.000 16.22 10.92 43.89 2.90
93 94 3.607741 GCCTGCTGCATATGATATGAGT 58.392 45.455 16.22 0.00 40.77 3.41
94 95 4.383444 GGCCTGCTGCATATGATATGAGTA 60.383 45.833 16.22 8.89 43.89 2.59
95 96 4.809958 GCCTGCTGCATATGATATGAGTAG 59.190 45.833 16.22 15.93 40.77 2.57
96 97 5.358090 CCTGCTGCATATGATATGAGTAGG 58.642 45.833 21.68 21.68 0.00 3.18
97 98 5.128335 CCTGCTGCATATGATATGAGTAGGA 59.872 44.000 25.94 17.04 34.45 2.94
98 99 5.970592 TGCTGCATATGATATGAGTAGGAC 58.029 41.667 16.22 0.00 0.00 3.85
99 100 5.481473 TGCTGCATATGATATGAGTAGGACA 59.519 40.000 16.22 2.20 0.00 4.02
100 101 6.014327 TGCTGCATATGATATGAGTAGGACAA 60.014 38.462 16.22 0.00 0.00 3.18
101 102 6.875726 GCTGCATATGATATGAGTAGGACAAA 59.124 38.462 16.22 0.00 0.00 2.83
102 103 7.388776 GCTGCATATGATATGAGTAGGACAAAA 59.611 37.037 16.22 0.00 0.00 2.44
103 104 8.837788 TGCATATGATATGAGTAGGACAAAAG 57.162 34.615 16.22 0.00 0.00 2.27
104 105 7.879677 TGCATATGATATGAGTAGGACAAAAGG 59.120 37.037 16.22 0.00 0.00 3.11
105 106 7.880195 GCATATGATATGAGTAGGACAAAAGGT 59.120 37.037 16.22 0.00 0.00 3.50
106 107 9.429359 CATATGATATGAGTAGGACAAAAGGTC 57.571 37.037 6.60 0.00 46.20 3.85
144 145 9.995003 ATTTCTTTATAACCTGTTGCAAATTGA 57.005 25.926 0.00 0.00 0.00 2.57
145 146 9.823647 TTTCTTTATAACCTGTTGCAAATTGAA 57.176 25.926 0.00 0.00 0.00 2.69
146 147 9.823647 TTCTTTATAACCTGTTGCAAATTGAAA 57.176 25.926 0.00 0.00 0.00 2.69
147 148 9.823647 TCTTTATAACCTGTTGCAAATTGAAAA 57.176 25.926 0.00 0.00 0.00 2.29
150 151 4.816786 ACCTGTTGCAAATTGAAAATGC 57.183 36.364 0.00 0.00 40.45 3.56
155 156 3.874400 TGCAAATTGAAAATGCAACCG 57.126 38.095 5.88 0.00 46.23 4.44
156 157 2.032204 TGCAAATTGAAAATGCAACCGC 60.032 40.909 5.88 0.00 46.23 5.68
165 166 4.560743 TGCAACCGCAGTGCCTGA 62.561 61.111 10.11 0.00 45.36 3.86
166 167 3.058160 GCAACCGCAGTGCCTGAT 61.058 61.111 10.11 0.00 38.36 2.90
167 168 2.872557 CAACCGCAGTGCCTGATG 59.127 61.111 10.11 2.33 32.44 3.07
168 169 1.968017 CAACCGCAGTGCCTGATGT 60.968 57.895 10.11 0.00 32.44 3.06
169 170 1.968017 AACCGCAGTGCCTGATGTG 60.968 57.895 10.11 0.00 32.44 3.21
170 171 2.046988 CCGCAGTGCCTGATGTGA 60.047 61.111 10.11 0.00 32.44 3.58
171 172 2.104859 CCGCAGTGCCTGATGTGAG 61.105 63.158 10.11 0.00 32.44 3.51
172 173 2.104859 CGCAGTGCCTGATGTGAGG 61.105 63.158 10.11 0.00 32.44 3.86
173 174 1.297689 GCAGTGCCTGATGTGAGGA 59.702 57.895 2.85 0.00 34.69 3.71
174 175 1.023513 GCAGTGCCTGATGTGAGGAC 61.024 60.000 2.85 0.00 34.69 3.85
175 176 0.738762 CAGTGCCTGATGTGAGGACG 60.739 60.000 0.00 0.00 34.69 4.79
176 177 1.188219 AGTGCCTGATGTGAGGACGT 61.188 55.000 0.00 0.00 34.69 4.34
177 178 1.016130 GTGCCTGATGTGAGGACGTG 61.016 60.000 0.00 0.00 34.69 4.49
178 179 2.103042 GCCTGATGTGAGGACGTGC 61.103 63.158 0.00 0.00 34.69 5.34
179 180 1.293179 CCTGATGTGAGGACGTGCA 59.707 57.895 10.52 0.00 34.69 4.57
180 181 0.107993 CCTGATGTGAGGACGTGCAT 60.108 55.000 10.52 0.00 34.69 3.96
181 182 1.004595 CTGATGTGAGGACGTGCATG 58.995 55.000 10.52 3.82 0.00 4.06
182 183 1.020861 TGATGTGAGGACGTGCATGC 61.021 55.000 11.82 11.82 0.00 4.06
183 184 1.003476 ATGTGAGGACGTGCATGCA 60.003 52.632 18.46 18.46 0.00 3.96
184 185 0.393402 ATGTGAGGACGTGCATGCAT 60.393 50.000 25.64 8.94 0.00 3.96
185 186 0.248843 TGTGAGGACGTGCATGCATA 59.751 50.000 25.64 0.00 0.00 3.14
186 187 1.338579 TGTGAGGACGTGCATGCATAA 60.339 47.619 25.64 0.00 0.00 1.90
187 188 1.942657 GTGAGGACGTGCATGCATAAT 59.057 47.619 25.64 12.45 0.00 1.28
188 189 2.355756 GTGAGGACGTGCATGCATAATT 59.644 45.455 25.64 8.37 0.00 1.40
189 190 2.355444 TGAGGACGTGCATGCATAATTG 59.645 45.455 25.64 13.66 0.00 2.32
190 191 1.677576 AGGACGTGCATGCATAATTGG 59.322 47.619 25.64 11.38 0.00 3.16
191 192 1.675483 GGACGTGCATGCATAATTGGA 59.325 47.619 25.64 0.00 0.00 3.53
192 193 2.541588 GGACGTGCATGCATAATTGGAC 60.542 50.000 25.64 7.15 0.00 4.02
193 194 2.090760 ACGTGCATGCATAATTGGACA 58.909 42.857 25.64 0.00 34.25 4.02
194 195 2.097954 ACGTGCATGCATAATTGGACAG 59.902 45.455 25.64 7.22 34.25 3.51
195 196 2.097954 CGTGCATGCATAATTGGACAGT 59.902 45.455 25.64 0.00 34.25 3.55
196 197 3.441163 GTGCATGCATAATTGGACAGTG 58.559 45.455 25.64 0.00 34.68 3.66
197 198 2.159212 TGCATGCATAATTGGACAGTGC 60.159 45.455 18.46 0.00 36.39 4.40
198 199 2.100252 GCATGCATAATTGGACAGTGCT 59.900 45.455 14.21 0.00 36.78 4.40
199 200 3.702330 CATGCATAATTGGACAGTGCTG 58.298 45.455 0.00 0.00 36.78 4.41
200 201 1.473677 TGCATAATTGGACAGTGCTGC 59.526 47.619 0.00 0.00 36.78 5.25
201 202 1.747355 GCATAATTGGACAGTGCTGCT 59.253 47.619 0.00 0.00 33.25 4.24
202 203 2.945008 GCATAATTGGACAGTGCTGCTA 59.055 45.455 0.00 0.00 33.25 3.49
203 204 3.378112 GCATAATTGGACAGTGCTGCTAA 59.622 43.478 0.00 0.00 33.25 3.09
204 205 4.037208 GCATAATTGGACAGTGCTGCTAAT 59.963 41.667 0.00 0.38 33.25 1.73
205 206 5.516996 CATAATTGGACAGTGCTGCTAATG 58.483 41.667 0.00 0.00 0.00 1.90
206 207 1.825090 TTGGACAGTGCTGCTAATGG 58.175 50.000 0.00 0.00 0.00 3.16
207 208 0.035152 TGGACAGTGCTGCTAATGGG 60.035 55.000 0.00 0.00 0.00 4.00
208 209 1.379642 GGACAGTGCTGCTAATGGGC 61.380 60.000 0.00 0.00 0.00 5.36
209 210 0.677731 GACAGTGCTGCTAATGGGCA 60.678 55.000 0.00 0.00 40.15 5.36
210 211 0.251297 ACAGTGCTGCTAATGGGCAA 60.251 50.000 0.00 0.00 41.94 4.52
211 212 1.108776 CAGTGCTGCTAATGGGCAAT 58.891 50.000 0.00 0.00 41.94 3.56
212 213 1.108776 AGTGCTGCTAATGGGCAATG 58.891 50.000 0.00 0.00 41.94 2.82
213 214 1.105457 GTGCTGCTAATGGGCAATGA 58.895 50.000 0.00 0.00 41.94 2.57
214 215 1.477700 GTGCTGCTAATGGGCAATGAA 59.522 47.619 0.00 0.00 41.94 2.57
215 216 2.101917 GTGCTGCTAATGGGCAATGAAT 59.898 45.455 0.00 0.00 41.94 2.57
216 217 2.101750 TGCTGCTAATGGGCAATGAATG 59.898 45.455 0.00 0.00 41.94 2.67
227 228 2.684001 CAATGAATGCATGGCCTTGT 57.316 45.000 19.05 0.18 34.26 3.16
228 229 2.546778 CAATGAATGCATGGCCTTGTC 58.453 47.619 19.05 12.09 34.26 3.18
229 230 2.154567 ATGAATGCATGGCCTTGTCT 57.845 45.000 19.05 5.06 32.31 3.41
230 231 1.179152 TGAATGCATGGCCTTGTCTG 58.821 50.000 19.05 3.38 0.00 3.51
231 232 0.458669 GAATGCATGGCCTTGTCTGG 59.541 55.000 19.05 0.00 0.00 3.86
232 233 0.974010 AATGCATGGCCTTGTCTGGG 60.974 55.000 19.05 0.00 0.00 4.45
233 234 2.036256 GCATGGCCTTGTCTGGGT 59.964 61.111 19.05 0.00 0.00 4.51
234 235 2.048603 GCATGGCCTTGTCTGGGTC 61.049 63.158 19.05 0.00 0.00 4.46
235 236 1.746615 CATGGCCTTGTCTGGGTCG 60.747 63.158 10.48 0.00 0.00 4.79
236 237 2.224159 ATGGCCTTGTCTGGGTCGT 61.224 57.895 3.32 0.00 0.00 4.34
237 238 2.358737 GGCCTTGTCTGGGTCGTG 60.359 66.667 0.00 0.00 0.00 4.35
238 239 2.741092 GCCTTGTCTGGGTCGTGA 59.259 61.111 0.00 0.00 0.00 4.35
239 240 1.296715 GCCTTGTCTGGGTCGTGAT 59.703 57.895 0.00 0.00 0.00 3.06
240 241 0.535335 GCCTTGTCTGGGTCGTGATA 59.465 55.000 0.00 0.00 0.00 2.15
241 242 1.471676 GCCTTGTCTGGGTCGTGATAG 60.472 57.143 0.00 0.00 0.00 2.08
242 243 1.825474 CCTTGTCTGGGTCGTGATAGT 59.175 52.381 0.00 0.00 0.00 2.12
243 244 3.021695 CCTTGTCTGGGTCGTGATAGTA 58.978 50.000 0.00 0.00 0.00 1.82
244 245 3.637229 CCTTGTCTGGGTCGTGATAGTAT 59.363 47.826 0.00 0.00 0.00 2.12
245 246 4.825634 CCTTGTCTGGGTCGTGATAGTATA 59.174 45.833 0.00 0.00 0.00 1.47
246 247 5.301045 CCTTGTCTGGGTCGTGATAGTATAA 59.699 44.000 0.00 0.00 0.00 0.98
247 248 6.015350 CCTTGTCTGGGTCGTGATAGTATAAT 60.015 42.308 0.00 0.00 0.00 1.28
248 249 6.570672 TGTCTGGGTCGTGATAGTATAATC 57.429 41.667 0.00 0.00 0.00 1.75
249 250 5.180680 TGTCTGGGTCGTGATAGTATAATCG 59.819 44.000 0.00 0.00 0.00 3.34
250 251 4.698780 TCTGGGTCGTGATAGTATAATCGG 59.301 45.833 0.00 0.00 0.00 4.18
251 252 4.654915 TGGGTCGTGATAGTATAATCGGA 58.345 43.478 0.00 0.00 0.00 4.55
252 253 4.698780 TGGGTCGTGATAGTATAATCGGAG 59.301 45.833 0.00 0.00 0.00 4.63
253 254 4.438472 GGGTCGTGATAGTATAATCGGAGC 60.438 50.000 0.00 0.00 32.82 4.70
254 255 4.155462 GGTCGTGATAGTATAATCGGAGCA 59.845 45.833 0.00 0.00 33.34 4.26
255 256 5.163642 GGTCGTGATAGTATAATCGGAGCAT 60.164 44.000 0.00 0.00 33.34 3.79
256 257 6.323266 GTCGTGATAGTATAATCGGAGCATT 58.677 40.000 0.00 0.00 0.00 3.56
257 258 7.414873 GGTCGTGATAGTATAATCGGAGCATTA 60.415 40.741 0.00 0.00 33.34 1.90
258 259 7.640630 GTCGTGATAGTATAATCGGAGCATTAG 59.359 40.741 0.00 0.00 0.00 1.73
259 260 6.415280 CGTGATAGTATAATCGGAGCATTAGC 59.585 42.308 0.00 0.00 42.56 3.09
283 284 6.569821 CGTAAGCGATCTAACTTAAATTCGG 58.430 40.000 0.00 0.00 41.33 4.30
284 285 6.197842 CGTAAGCGATCTAACTTAAATTCGGT 59.802 38.462 0.00 0.00 41.33 4.69
285 286 6.980051 AAGCGATCTAACTTAAATTCGGTT 57.020 33.333 0.00 0.00 40.94 4.44
286 287 9.023967 GTAAGCGATCTAACTTAAATTCGGTTA 57.976 33.333 9.77 9.77 43.00 2.85
287 288 8.658499 AAGCGATCTAACTTAAATTCGGTTAT 57.342 30.769 5.86 0.00 43.00 1.89
288 289 8.295569 AGCGATCTAACTTAAATTCGGTTATC 57.704 34.615 0.00 0.00 34.10 1.75
289 290 7.114529 AGCGATCTAACTTAAATTCGGTTATCG 59.885 37.037 13.15 13.15 35.93 2.92
302 303 4.229096 TCGGTTATCGATTGTATAACGCC 58.771 43.478 1.71 0.00 43.74 5.68
303 304 3.982701 CGGTTATCGATTGTATAACGCCA 59.017 43.478 1.71 0.00 39.61 5.69
304 305 4.445052 CGGTTATCGATTGTATAACGCCAA 59.555 41.667 1.71 0.00 39.61 4.52
305 306 5.610982 CGGTTATCGATTGTATAACGCCAAC 60.611 44.000 1.71 0.00 39.61 3.77
306 307 5.333568 GGTTATCGATTGTATAACGCCAACC 60.334 44.000 1.71 2.76 39.61 3.77
307 308 3.530265 TCGATTGTATAACGCCAACCT 57.470 42.857 0.00 0.00 0.00 3.50
308 309 3.191669 TCGATTGTATAACGCCAACCTG 58.808 45.455 0.00 0.00 0.00 4.00
309 310 3.119065 TCGATTGTATAACGCCAACCTGA 60.119 43.478 0.00 0.00 0.00 3.86
310 311 3.000925 CGATTGTATAACGCCAACCTGAC 59.999 47.826 0.00 0.00 0.00 3.51
311 312 1.999048 TGTATAACGCCAACCTGACG 58.001 50.000 0.00 0.00 0.00 4.35
312 313 1.283736 GTATAACGCCAACCTGACGG 58.716 55.000 0.00 0.00 0.00 4.79
313 314 1.135024 GTATAACGCCAACCTGACGGA 60.135 52.381 0.00 0.00 0.00 4.69
314 315 0.539986 ATAACGCCAACCTGACGGAT 59.460 50.000 0.00 0.00 0.00 4.18
315 316 0.108520 TAACGCCAACCTGACGGATC 60.109 55.000 0.00 0.00 0.00 3.36
316 317 1.827399 AACGCCAACCTGACGGATCT 61.827 55.000 0.00 0.00 0.00 2.75
317 318 1.519455 CGCCAACCTGACGGATCTC 60.519 63.158 0.00 0.00 0.00 2.75
318 319 1.596934 GCCAACCTGACGGATCTCA 59.403 57.895 0.00 0.00 0.00 3.27
319 320 0.036388 GCCAACCTGACGGATCTCAA 60.036 55.000 0.00 0.00 0.00 3.02
320 321 2.009042 GCCAACCTGACGGATCTCAAG 61.009 57.143 0.00 0.00 0.00 3.02
321 322 1.363744 CAACCTGACGGATCTCAAGC 58.636 55.000 0.00 0.00 0.00 4.01
322 323 1.066573 CAACCTGACGGATCTCAAGCT 60.067 52.381 0.00 0.00 0.00 3.74
323 324 0.534412 ACCTGACGGATCTCAAGCTG 59.466 55.000 0.00 0.00 0.00 4.24
324 325 0.809241 CCTGACGGATCTCAAGCTGC 60.809 60.000 0.00 0.00 0.00 5.25
325 326 0.809241 CTGACGGATCTCAAGCTGCC 60.809 60.000 0.00 0.00 0.00 4.85
326 327 1.522580 GACGGATCTCAAGCTGCCC 60.523 63.158 0.00 0.00 0.00 5.36
327 328 1.965754 GACGGATCTCAAGCTGCCCT 61.966 60.000 0.00 0.00 0.00 5.19
328 329 1.523258 CGGATCTCAAGCTGCCCTG 60.523 63.158 0.00 0.00 0.00 4.45
329 330 1.606531 GGATCTCAAGCTGCCCTGT 59.393 57.895 0.00 0.00 0.00 4.00
330 331 0.463474 GGATCTCAAGCTGCCCTGTC 60.463 60.000 0.00 0.00 0.00 3.51
331 332 0.540923 GATCTCAAGCTGCCCTGTCT 59.459 55.000 0.00 0.00 0.00 3.41
332 333 0.252479 ATCTCAAGCTGCCCTGTCTG 59.748 55.000 0.00 0.00 0.00 3.51
333 334 2.033141 TCAAGCTGCCCTGTCTGC 59.967 61.111 0.00 0.00 0.00 4.26
334 335 2.033757 CAAGCTGCCCTGTCTGCT 59.966 61.111 0.00 0.00 41.96 4.24
335 336 2.039405 CAAGCTGCCCTGTCTGCTC 61.039 63.158 0.00 0.00 39.78 4.26
336 337 3.265272 AAGCTGCCCTGTCTGCTCC 62.265 63.158 0.00 0.00 39.78 4.70
337 338 3.715097 GCTGCCCTGTCTGCTCCT 61.715 66.667 0.00 0.00 0.00 3.69
338 339 2.362369 GCTGCCCTGTCTGCTCCTA 61.362 63.158 0.00 0.00 0.00 2.94
339 340 1.519719 CTGCCCTGTCTGCTCCTAC 59.480 63.158 0.00 0.00 0.00 3.18
340 341 1.965754 CTGCCCTGTCTGCTCCTACC 61.966 65.000 0.00 0.00 0.00 3.18
341 342 3.082579 GCCCTGTCTGCTCCTACCG 62.083 68.421 0.00 0.00 0.00 4.02
342 343 1.682684 CCCTGTCTGCTCCTACCGT 60.683 63.158 0.00 0.00 0.00 4.83
343 344 0.395311 CCCTGTCTGCTCCTACCGTA 60.395 60.000 0.00 0.00 0.00 4.02
344 345 1.025812 CCTGTCTGCTCCTACCGTAG 58.974 60.000 0.00 0.00 0.00 3.51
345 346 0.382515 CTGTCTGCTCCTACCGTAGC 59.617 60.000 0.00 0.00 39.25 3.58
346 347 0.323087 TGTCTGCTCCTACCGTAGCA 60.323 55.000 0.00 0.00 46.11 3.49
350 351 2.309528 TGCTCCTACCGTAGCAAATG 57.690 50.000 0.00 0.00 45.36 2.32
351 352 0.938008 GCTCCTACCGTAGCAAATGC 59.062 55.000 0.00 0.00 38.63 3.56
352 353 1.583054 CTCCTACCGTAGCAAATGCC 58.417 55.000 0.94 0.00 43.38 4.40
353 354 0.179094 TCCTACCGTAGCAAATGCCG 60.179 55.000 0.94 0.00 43.38 5.69
354 355 0.179094 CCTACCGTAGCAAATGCCGA 60.179 55.000 0.94 0.00 43.38 5.54
355 356 1.540363 CCTACCGTAGCAAATGCCGAT 60.540 52.381 0.94 0.00 43.38 4.18
356 357 2.288579 CCTACCGTAGCAAATGCCGATA 60.289 50.000 0.94 0.00 43.38 2.92
357 358 1.865865 ACCGTAGCAAATGCCGATAG 58.134 50.000 0.94 0.00 43.38 2.08
358 359 0.512952 CCGTAGCAAATGCCGATAGC 59.487 55.000 0.94 0.00 43.38 2.97
367 368 4.632974 GCCGATAGCAGCCAGGGG 62.633 72.222 0.00 0.00 42.97 4.79
368 369 2.844362 CCGATAGCAGCCAGGGGA 60.844 66.667 0.00 0.00 0.00 4.81
369 370 2.739784 CGATAGCAGCCAGGGGAG 59.260 66.667 0.00 0.00 0.00 4.30
370 371 2.876945 CGATAGCAGCCAGGGGAGG 61.877 68.421 0.00 0.00 0.00 4.30
371 372 1.460305 GATAGCAGCCAGGGGAGGA 60.460 63.158 0.00 0.00 0.00 3.71
372 373 1.461075 ATAGCAGCCAGGGGAGGAG 60.461 63.158 0.00 0.00 0.00 3.69
375 376 3.095163 CAGCCAGGGGAGGAGCAT 61.095 66.667 0.00 0.00 0.00 3.79
376 377 3.095163 AGCCAGGGGAGGAGCATG 61.095 66.667 0.00 0.00 0.00 4.06
377 378 4.891037 GCCAGGGGAGGAGCATGC 62.891 72.222 10.51 10.51 0.00 4.06
378 379 3.414193 CCAGGGGAGGAGCATGCA 61.414 66.667 21.98 0.00 0.00 3.96
379 380 2.764737 CCAGGGGAGGAGCATGCAT 61.765 63.158 21.98 4.95 0.00 3.96
380 381 1.528542 CAGGGGAGGAGCATGCATG 60.529 63.158 22.70 22.70 0.00 4.06
381 382 1.695239 AGGGGAGGAGCATGCATGA 60.695 57.895 30.64 0.00 0.00 3.07
382 383 1.527844 GGGGAGGAGCATGCATGAC 60.528 63.158 30.64 20.86 0.00 3.06
383 384 1.225426 GGGAGGAGCATGCATGACA 59.775 57.895 30.64 0.00 0.00 3.58
384 385 0.818445 GGGAGGAGCATGCATGACAG 60.818 60.000 30.64 3.89 0.00 3.51
385 386 0.818445 GGAGGAGCATGCATGACAGG 60.818 60.000 30.64 3.47 0.00 4.00
391 392 2.314256 CATGCATGACAGGCTACCG 58.686 57.895 22.59 0.00 0.00 4.02
392 393 0.179076 CATGCATGACAGGCTACCGA 60.179 55.000 22.59 0.00 0.00 4.69
393 394 0.179073 ATGCATGACAGGCTACCGAC 60.179 55.000 13.92 0.00 0.00 4.79
394 395 1.521681 GCATGACAGGCTACCGACC 60.522 63.158 4.51 0.00 0.00 4.79
395 396 1.144057 CATGACAGGCTACCGACCC 59.856 63.158 0.00 0.00 0.00 4.46
396 397 2.064581 ATGACAGGCTACCGACCCC 61.065 63.158 0.00 0.00 0.00 4.95
397 398 3.468140 GACAGGCTACCGACCCCC 61.468 72.222 0.00 0.00 0.00 5.40
415 416 4.626081 GCACGAGCACCACCACCT 62.626 66.667 0.00 0.00 41.58 4.00
416 417 3.056458 CACGAGCACCACCACCTA 58.944 61.111 0.00 0.00 0.00 3.08
417 418 1.374252 CACGAGCACCACCACCTAC 60.374 63.158 0.00 0.00 0.00 3.18
418 419 2.264794 CGAGCACCACCACCTACC 59.735 66.667 0.00 0.00 0.00 3.18
419 420 2.264794 GAGCACCACCACCTACCG 59.735 66.667 0.00 0.00 0.00 4.02
420 421 2.525877 AGCACCACCACCTACCGT 60.526 61.111 0.00 0.00 0.00 4.83
421 422 2.358247 GCACCACCACCTACCGTG 60.358 66.667 0.00 0.00 42.62 4.94
422 423 2.874664 GCACCACCACCTACCGTGA 61.875 63.158 0.00 0.00 46.20 4.35
423 424 1.980052 CACCACCACCTACCGTGAT 59.020 57.895 0.00 0.00 46.20 3.06
424 425 0.108329 CACCACCACCTACCGTGATC 60.108 60.000 0.00 0.00 46.20 2.92
425 426 0.543410 ACCACCACCTACCGTGATCA 60.543 55.000 0.00 0.00 46.20 2.92
426 427 0.108329 CCACCACCTACCGTGATCAC 60.108 60.000 16.21 16.21 46.20 3.06
436 437 4.711980 GTGATCACGTAGGGCGAG 57.288 61.111 10.69 0.00 44.77 5.03
437 438 1.589196 GTGATCACGTAGGGCGAGC 60.589 63.158 10.69 0.00 44.77 5.03
438 439 2.027751 GATCACGTAGGGCGAGCC 59.972 66.667 5.37 5.37 44.77 4.70
439 440 2.442272 ATCACGTAGGGCGAGCCT 60.442 61.111 14.33 2.91 44.77 4.58
440 441 2.017559 GATCACGTAGGGCGAGCCTT 62.018 60.000 14.33 9.16 44.77 4.35
441 442 2.017559 ATCACGTAGGGCGAGCCTTC 62.018 60.000 14.33 0.00 44.77 3.46
442 443 2.362632 ACGTAGGGCGAGCCTTCT 60.363 61.111 14.33 6.12 44.77 2.85
443 444 2.413765 CGTAGGGCGAGCCTTCTC 59.586 66.667 14.33 3.06 44.77 2.87
444 445 2.122167 CGTAGGGCGAGCCTTCTCT 61.122 63.158 14.33 5.04 44.77 3.10
445 446 1.439644 GTAGGGCGAGCCTTCTCTG 59.560 63.158 14.33 0.00 37.19 3.35
446 447 1.000486 TAGGGCGAGCCTTCTCTGT 60.000 57.895 14.33 0.00 37.19 3.41
447 448 0.257905 TAGGGCGAGCCTTCTCTGTA 59.742 55.000 14.33 0.00 37.19 2.74
448 449 1.040339 AGGGCGAGCCTTCTCTGTAG 61.040 60.000 14.33 0.00 37.19 2.74
449 450 1.324005 GGGCGAGCCTTCTCTGTAGT 61.324 60.000 14.33 0.00 37.19 2.73
450 451 1.390565 GGCGAGCCTTCTCTGTAGTA 58.609 55.000 6.90 0.00 37.19 1.82
451 452 1.957877 GGCGAGCCTTCTCTGTAGTAT 59.042 52.381 6.90 0.00 37.19 2.12
452 453 2.362717 GGCGAGCCTTCTCTGTAGTATT 59.637 50.000 6.90 0.00 37.19 1.89
453 454 3.376540 GCGAGCCTTCTCTGTAGTATTG 58.623 50.000 0.00 0.00 37.19 1.90
454 455 3.797184 GCGAGCCTTCTCTGTAGTATTGG 60.797 52.174 0.00 0.00 37.19 3.16
455 456 3.723260 GAGCCTTCTCTGTAGTATTGGC 58.277 50.000 0.00 0.00 39.40 4.52
456 457 3.379452 AGCCTTCTCTGTAGTATTGGCT 58.621 45.455 0.00 0.00 43.81 4.75
457 458 3.133721 AGCCTTCTCTGTAGTATTGGCTG 59.866 47.826 0.00 0.00 46.36 4.85
458 459 3.133003 GCCTTCTCTGTAGTATTGGCTGA 59.867 47.826 0.00 0.00 36.52 4.26
459 460 4.688021 CCTTCTCTGTAGTATTGGCTGAC 58.312 47.826 0.00 0.00 0.00 3.51
460 461 4.160439 CCTTCTCTGTAGTATTGGCTGACA 59.840 45.833 0.00 0.00 0.00 3.58
461 462 5.163364 CCTTCTCTGTAGTATTGGCTGACAT 60.163 44.000 0.00 0.00 0.00 3.06
462 463 5.268118 TCTCTGTAGTATTGGCTGACATG 57.732 43.478 0.00 0.00 0.00 3.21
463 464 4.711846 TCTCTGTAGTATTGGCTGACATGT 59.288 41.667 0.00 0.00 0.00 3.21
464 465 4.758688 TCTGTAGTATTGGCTGACATGTG 58.241 43.478 1.15 0.00 0.00 3.21
465 466 3.872696 TGTAGTATTGGCTGACATGTGG 58.127 45.455 1.15 0.00 0.00 4.17
466 467 2.425143 AGTATTGGCTGACATGTGGG 57.575 50.000 1.15 0.00 0.00 4.61
467 468 1.915489 AGTATTGGCTGACATGTGGGA 59.085 47.619 1.15 0.00 0.00 4.37
468 469 2.017049 GTATTGGCTGACATGTGGGAC 58.983 52.381 1.15 0.00 0.00 4.46
469 470 0.323725 ATTGGCTGACATGTGGGACC 60.324 55.000 1.15 0.00 0.00 4.46
470 471 2.436646 GGCTGACATGTGGGACCG 60.437 66.667 1.15 0.00 0.00 4.79
471 472 3.127533 GCTGACATGTGGGACCGC 61.128 66.667 1.15 0.00 0.00 5.68
472 473 2.665000 CTGACATGTGGGACCGCT 59.335 61.111 1.15 0.00 0.00 5.52
473 474 1.897423 CTGACATGTGGGACCGCTA 59.103 57.895 1.15 0.00 0.00 4.26
474 475 0.179100 CTGACATGTGGGACCGCTAG 60.179 60.000 1.15 0.00 0.00 3.42
475 476 1.521681 GACATGTGGGACCGCTAGC 60.522 63.158 1.15 4.06 0.00 3.42
476 477 2.238847 GACATGTGGGACCGCTAGCA 62.239 60.000 16.45 0.00 0.00 3.49
477 478 1.078497 CATGTGGGACCGCTAGCAA 60.078 57.895 16.45 0.00 0.00 3.91
478 479 1.078426 ATGTGGGACCGCTAGCAAC 60.078 57.895 16.45 4.91 0.00 4.17
479 480 1.553690 ATGTGGGACCGCTAGCAACT 61.554 55.000 16.45 0.00 0.00 3.16
480 481 1.003718 GTGGGACCGCTAGCAACTT 60.004 57.895 16.45 0.00 0.00 2.66
481 482 1.003839 TGGGACCGCTAGCAACTTG 60.004 57.895 16.45 0.00 0.00 3.16
482 483 1.745489 GGGACCGCTAGCAACTTGG 60.745 63.158 16.45 9.81 0.00 3.61
483 484 2.399356 GGACCGCTAGCAACTTGGC 61.399 63.158 16.45 3.86 0.00 4.52
484 485 2.359975 ACCGCTAGCAACTTGGCC 60.360 61.111 16.45 0.00 0.00 5.36
485 486 3.134127 CCGCTAGCAACTTGGCCC 61.134 66.667 16.45 0.00 0.00 5.80
486 487 2.359850 CGCTAGCAACTTGGCCCA 60.360 61.111 16.45 0.00 0.00 5.36
487 488 2.690778 CGCTAGCAACTTGGCCCAC 61.691 63.158 16.45 0.00 0.00 4.61
488 489 1.603455 GCTAGCAACTTGGCCCACA 60.603 57.895 10.63 0.00 0.00 4.17
489 490 0.967380 GCTAGCAACTTGGCCCACAT 60.967 55.000 10.63 0.00 0.00 3.21
490 491 0.813184 CTAGCAACTTGGCCCACATG 59.187 55.000 0.00 0.00 0.00 3.21
491 492 0.112218 TAGCAACTTGGCCCACATGT 59.888 50.000 0.00 0.00 38.94 3.21
492 493 1.181098 AGCAACTTGGCCCACATGTC 61.181 55.000 0.00 0.00 36.54 3.06
493 494 1.462731 GCAACTTGGCCCACATGTCA 61.463 55.000 0.00 0.00 36.54 3.58
494 495 0.599558 CAACTTGGCCCACATGTCAG 59.400 55.000 0.00 0.00 36.54 3.51
495 496 0.185901 AACTTGGCCCACATGTCAGT 59.814 50.000 0.00 0.00 36.54 3.41
496 497 0.538057 ACTTGGCCCACATGTCAGTG 60.538 55.000 0.00 0.00 39.21 3.66
497 498 0.250858 CTTGGCCCACATGTCAGTGA 60.251 55.000 0.00 0.00 42.05 3.41
498 499 0.537143 TTGGCCCACATGTCAGTGAC 60.537 55.000 16.68 16.68 42.05 3.67
499 500 1.675641 GGCCCACATGTCAGTGACC 60.676 63.158 20.43 2.99 42.05 4.02
500 501 1.675641 GCCCACATGTCAGTGACCC 60.676 63.158 20.43 0.00 42.05 4.46
501 502 1.002134 CCCACATGTCAGTGACCCC 60.002 63.158 20.43 0.00 42.05 4.95
502 503 1.002134 CCACATGTCAGTGACCCCC 60.002 63.158 20.43 0.00 42.05 5.40
503 504 1.375908 CACATGTCAGTGACCCCCG 60.376 63.158 20.43 8.53 42.05 5.73
504 505 2.268920 CATGTCAGTGACCCCCGG 59.731 66.667 20.43 0.00 0.00 5.73
505 506 3.717294 ATGTCAGTGACCCCCGGC 61.717 66.667 20.43 0.00 0.00 6.13
507 508 4.394712 GTCAGTGACCCCCGGCAG 62.395 72.222 12.54 0.00 0.00 4.85
508 509 4.631740 TCAGTGACCCCCGGCAGA 62.632 66.667 0.00 0.00 0.00 4.26
509 510 4.087892 CAGTGACCCCCGGCAGAG 62.088 72.222 0.00 0.00 0.00 3.35
512 513 4.649705 TGACCCCCGGCAGAGGAA 62.650 66.667 0.00 0.00 0.00 3.36
513 514 3.327404 GACCCCCGGCAGAGGAAA 61.327 66.667 0.00 0.00 0.00 3.13
514 515 2.856988 ACCCCCGGCAGAGGAAAA 60.857 61.111 0.00 0.00 0.00 2.29
515 516 2.211468 GACCCCCGGCAGAGGAAAAT 62.211 60.000 0.00 0.00 0.00 1.82
516 517 0.917333 ACCCCCGGCAGAGGAAAATA 60.917 55.000 0.00 0.00 0.00 1.40
517 518 0.478507 CCCCCGGCAGAGGAAAATAT 59.521 55.000 0.00 0.00 0.00 1.28
518 519 1.133482 CCCCCGGCAGAGGAAAATATT 60.133 52.381 0.00 0.00 0.00 1.28
519 520 1.956477 CCCCGGCAGAGGAAAATATTG 59.044 52.381 0.00 0.00 0.00 1.90
520 521 1.338020 CCCGGCAGAGGAAAATATTGC 59.662 52.381 0.00 0.00 0.00 3.56
521 522 2.023673 CCGGCAGAGGAAAATATTGCA 58.976 47.619 0.00 0.00 36.53 4.08
522 523 2.624838 CCGGCAGAGGAAAATATTGCAT 59.375 45.455 0.00 0.00 36.53 3.96
523 524 3.820467 CCGGCAGAGGAAAATATTGCATA 59.180 43.478 0.00 0.00 36.53 3.14
524 525 4.460382 CCGGCAGAGGAAAATATTGCATAT 59.540 41.667 0.00 0.00 36.53 1.78
525 526 5.392380 CCGGCAGAGGAAAATATTGCATATC 60.392 44.000 0.00 0.00 36.53 1.63
526 527 5.392380 CGGCAGAGGAAAATATTGCATATCC 60.392 44.000 0.00 0.00 36.53 2.59
527 528 5.477984 GGCAGAGGAAAATATTGCATATCCA 59.522 40.000 0.00 0.00 36.53 3.41
528 529 6.385033 GCAGAGGAAAATATTGCATATCCAC 58.615 40.000 0.00 0.00 34.99 4.02
529 530 6.571150 GCAGAGGAAAATATTGCATATCCACC 60.571 42.308 0.00 0.00 34.99 4.61
530 531 5.707298 AGAGGAAAATATTGCATATCCACCG 59.293 40.000 0.00 0.00 0.00 4.94
531 532 4.766891 AGGAAAATATTGCATATCCACCGG 59.233 41.667 0.00 0.00 0.00 5.28
532 533 4.522789 GGAAAATATTGCATATCCACCGGT 59.477 41.667 0.00 0.00 0.00 5.28
533 534 5.708230 GGAAAATATTGCATATCCACCGGTA 59.292 40.000 6.87 0.00 0.00 4.02
534 535 6.128007 GGAAAATATTGCATATCCACCGGTAG 60.128 42.308 6.87 0.00 0.00 3.18
535 536 5.755409 AATATTGCATATCCACCGGTAGA 57.245 39.130 6.87 5.75 0.00 2.59
536 537 5.957771 ATATTGCATATCCACCGGTAGAT 57.042 39.130 19.57 19.57 0.00 1.98
537 538 3.678056 TTGCATATCCACCGGTAGATC 57.322 47.619 19.23 6.04 0.00 2.75
538 539 2.604139 TGCATATCCACCGGTAGATCA 58.396 47.619 19.23 8.67 0.00 2.92
539 540 2.969262 TGCATATCCACCGGTAGATCAA 59.031 45.455 19.23 3.23 0.00 2.57
540 541 3.006859 TGCATATCCACCGGTAGATCAAG 59.993 47.826 19.23 11.10 0.00 3.02
541 542 3.589988 CATATCCACCGGTAGATCAAGC 58.410 50.000 19.23 0.00 0.00 4.01
542 543 0.759346 ATCCACCGGTAGATCAAGCC 59.241 55.000 9.96 0.00 0.00 4.35
543 544 0.616395 TCCACCGGTAGATCAAGCCA 60.616 55.000 6.87 0.00 0.00 4.75
544 545 0.469917 CCACCGGTAGATCAAGCCAT 59.530 55.000 6.87 0.00 0.00 4.40
545 546 1.541233 CCACCGGTAGATCAAGCCATC 60.541 57.143 6.87 0.00 0.00 3.51
546 547 1.138859 CACCGGTAGATCAAGCCATCA 59.861 52.381 6.87 0.00 0.00 3.07
547 548 2.050144 ACCGGTAGATCAAGCCATCAT 58.950 47.619 4.49 0.00 0.00 2.45
548 549 2.224378 ACCGGTAGATCAAGCCATCATG 60.224 50.000 4.49 0.00 0.00 3.07
549 550 1.802960 CGGTAGATCAAGCCATCATGC 59.197 52.381 0.00 0.00 0.00 4.06
550 551 2.807837 CGGTAGATCAAGCCATCATGCA 60.808 50.000 0.00 0.00 0.00 3.96
551 552 2.551459 GGTAGATCAAGCCATCATGCAC 59.449 50.000 0.00 0.00 0.00 4.57
552 553 2.730934 AGATCAAGCCATCATGCACT 57.269 45.000 0.00 0.00 0.00 4.40
553 554 2.573369 AGATCAAGCCATCATGCACTC 58.427 47.619 0.00 0.00 0.00 3.51
554 555 1.607628 GATCAAGCCATCATGCACTCC 59.392 52.381 0.00 0.00 0.00 3.85
555 556 0.394762 TCAAGCCATCATGCACTCCC 60.395 55.000 0.00 0.00 0.00 4.30
556 557 1.076485 AAGCCATCATGCACTCCCC 60.076 57.895 0.00 0.00 0.00 4.81
557 558 2.520260 GCCATCATGCACTCCCCC 60.520 66.667 0.00 0.00 0.00 5.40
558 559 3.009275 CCATCATGCACTCCCCCA 58.991 61.111 0.00 0.00 0.00 4.96
559 560 1.454479 CCATCATGCACTCCCCCAC 60.454 63.158 0.00 0.00 0.00 4.61
560 561 1.611419 CATCATGCACTCCCCCACT 59.389 57.895 0.00 0.00 0.00 4.00
650 651 1.007336 CAGAAAGCTACCGAACGCGT 61.007 55.000 5.58 5.58 35.23 6.01
836 867 2.879907 GCACCCGCTCGTACACTA 59.120 61.111 0.00 0.00 34.30 2.74
954 1044 2.751436 GCCGCAATGCCTTCCTGA 60.751 61.111 0.00 0.00 0.00 3.86
990 1080 1.826054 CTCGGAGGAGGAGTGCGAT 60.826 63.158 0.00 0.00 37.14 4.58
1040 1142 1.446016 AGTTCTTTGCCACCTAGGGT 58.554 50.000 14.81 0.00 38.09 4.34
1041 1143 1.780919 AGTTCTTTGCCACCTAGGGTT 59.219 47.619 14.81 0.00 38.09 4.11
1042 1144 2.983898 AGTTCTTTGCCACCTAGGGTTA 59.016 45.455 14.81 0.00 38.09 2.85
1043 1145 3.009143 AGTTCTTTGCCACCTAGGGTTAG 59.991 47.826 14.81 0.00 38.09 2.34
1518 1631 7.094291 TGTTCACTGATGTTTGATATGATGCAA 60.094 33.333 0.00 0.00 0.00 4.08
2128 2322 1.561542 CACCAGGAAGGCTATGAAGGT 59.438 52.381 0.00 0.00 43.14 3.50
2219 2515 2.603075 AAGAAGGGTATGGCAGCAAA 57.397 45.000 0.00 0.00 0.00 3.68
2315 2617 6.062258 GCCTTTATATAAGGATGTGGCCTA 57.938 41.667 3.32 0.00 39.81 3.93
2428 2749 9.959721 GTTGTAATGGATCACCTATGGTATTAT 57.040 33.333 0.00 0.00 32.11 1.28
2706 3030 2.107552 CCTTTCCCAGTTACTCCACCAA 59.892 50.000 0.00 0.00 0.00 3.67
2810 3142 2.436292 GCAGCAGCACAGAGGAGG 60.436 66.667 0.00 0.00 41.58 4.30
2811 3143 2.952293 GCAGCAGCACAGAGGAGGA 61.952 63.158 0.00 0.00 41.58 3.71
2812 3144 1.218585 CAGCAGCACAGAGGAGGAG 59.781 63.158 0.00 0.00 0.00 3.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.137544 TGCTTTAAGAAACTCCCAGGTCA 59.862 43.478 0.00 0.00 0.00 4.02
1 2 3.751518 TGCTTTAAGAAACTCCCAGGTC 58.248 45.455 0.00 0.00 0.00 3.85
3 4 3.057245 GCTTGCTTTAAGAAACTCCCAGG 60.057 47.826 0.00 0.00 38.76 4.45
4 5 3.569701 TGCTTGCTTTAAGAAACTCCCAG 59.430 43.478 0.00 0.00 38.76 4.45
5 6 3.317993 GTGCTTGCTTTAAGAAACTCCCA 59.682 43.478 0.00 0.00 38.76 4.37
6 7 3.570125 AGTGCTTGCTTTAAGAAACTCCC 59.430 43.478 0.00 0.00 38.76 4.30
7 8 4.837896 AGTGCTTGCTTTAAGAAACTCC 57.162 40.909 0.00 0.00 38.76 3.85
8 9 5.334957 GGGTAGTGCTTGCTTTAAGAAACTC 60.335 44.000 0.00 0.00 38.76 3.01
9 10 4.519350 GGGTAGTGCTTGCTTTAAGAAACT 59.481 41.667 0.00 0.00 38.76 2.66
10 11 4.277423 TGGGTAGTGCTTGCTTTAAGAAAC 59.723 41.667 0.00 0.00 38.76 2.78
11 12 4.277423 GTGGGTAGTGCTTGCTTTAAGAAA 59.723 41.667 0.00 0.00 38.76 2.52
12 13 3.818773 GTGGGTAGTGCTTGCTTTAAGAA 59.181 43.478 0.00 0.00 38.76 2.52
13 14 3.072476 AGTGGGTAGTGCTTGCTTTAAGA 59.928 43.478 0.00 0.00 38.76 2.10
14 15 3.412386 AGTGGGTAGTGCTTGCTTTAAG 58.588 45.455 0.00 0.00 39.49 1.85
15 16 3.502123 AGTGGGTAGTGCTTGCTTTAA 57.498 42.857 0.00 0.00 0.00 1.52
16 17 3.146066 CAAGTGGGTAGTGCTTGCTTTA 58.854 45.455 0.00 0.00 34.16 1.85
17 18 1.956477 CAAGTGGGTAGTGCTTGCTTT 59.044 47.619 0.00 0.00 34.16 3.51
18 19 1.609208 CAAGTGGGTAGTGCTTGCTT 58.391 50.000 0.00 0.00 34.16 3.91
19 20 3.329300 CAAGTGGGTAGTGCTTGCT 57.671 52.632 0.00 0.00 34.16 3.91
21 22 1.577328 CGGCAAGTGGGTAGTGCTTG 61.577 60.000 0.00 0.00 41.61 4.01
51 52 4.036380 GGCCCTTGTATTGCACTTATGTAC 59.964 45.833 0.00 0.00 0.00 2.90
54 55 3.067180 CAGGCCCTTGTATTGCACTTATG 59.933 47.826 0.00 0.00 0.00 1.90
58 59 0.967380 GCAGGCCCTTGTATTGCACT 60.967 55.000 0.00 0.00 34.99 4.40
59 60 0.967380 AGCAGGCCCTTGTATTGCAC 60.967 55.000 12.78 0.00 37.24 4.57
60 61 0.966875 CAGCAGGCCCTTGTATTGCA 60.967 55.000 12.78 0.00 37.24 4.08
61 62 1.811860 CAGCAGGCCCTTGTATTGC 59.188 57.895 0.00 0.00 35.09 3.56
62 63 0.966875 TGCAGCAGGCCCTTGTATTG 60.967 55.000 0.00 0.00 43.89 1.90
63 64 0.032813 ATGCAGCAGGCCCTTGTATT 60.033 50.000 0.00 0.00 43.89 1.89
64 65 0.846015 TATGCAGCAGGCCCTTGTAT 59.154 50.000 0.00 3.21 43.89 2.29
65 66 0.846015 ATATGCAGCAGGCCCTTGTA 59.154 50.000 0.00 0.00 43.89 2.41
66 67 0.754217 CATATGCAGCAGGCCCTTGT 60.754 55.000 0.00 0.00 43.89 3.16
67 68 0.466739 TCATATGCAGCAGGCCCTTG 60.467 55.000 0.00 0.00 43.89 3.61
68 69 0.481567 ATCATATGCAGCAGGCCCTT 59.518 50.000 0.00 0.00 43.89 3.95
69 70 1.365293 TATCATATGCAGCAGGCCCT 58.635 50.000 0.00 0.00 43.89 5.19
70 71 2.022195 CATATCATATGCAGCAGGCCC 58.978 52.381 0.00 0.00 43.89 5.80
71 72 2.943690 CTCATATCATATGCAGCAGGCC 59.056 50.000 0.00 0.00 43.89 5.19
72 73 3.607741 ACTCATATCATATGCAGCAGGC 58.392 45.455 0.00 0.00 45.13 4.85
73 74 5.128335 TCCTACTCATATCATATGCAGCAGG 59.872 44.000 0.00 12.79 0.00 4.85
74 75 6.041511 GTCCTACTCATATCATATGCAGCAG 58.958 44.000 0.00 0.00 0.00 4.24
75 76 5.481473 TGTCCTACTCATATCATATGCAGCA 59.519 40.000 0.00 0.00 0.00 4.41
76 77 5.970592 TGTCCTACTCATATCATATGCAGC 58.029 41.667 0.00 0.00 0.00 5.25
77 78 8.837788 TTTTGTCCTACTCATATCATATGCAG 57.162 34.615 0.00 1.90 0.00 4.41
78 79 7.879677 CCTTTTGTCCTACTCATATCATATGCA 59.120 37.037 0.00 0.00 0.00 3.96
79 80 7.880195 ACCTTTTGTCCTACTCATATCATATGC 59.120 37.037 0.00 0.00 0.00 3.14
80 81 9.429359 GACCTTTTGTCCTACTCATATCATATG 57.571 37.037 0.00 0.00 38.09 1.78
81 82 9.159254 TGACCTTTTGTCCTACTCATATCATAT 57.841 33.333 0.00 0.00 43.78 1.78
82 83 8.547481 TGACCTTTTGTCCTACTCATATCATA 57.453 34.615 0.00 0.00 43.78 2.15
83 84 7.437713 TGACCTTTTGTCCTACTCATATCAT 57.562 36.000 0.00 0.00 43.78 2.45
84 85 6.867519 TGACCTTTTGTCCTACTCATATCA 57.132 37.500 0.00 0.00 43.78 2.15
85 86 8.738645 ATTTGACCTTTTGTCCTACTCATATC 57.261 34.615 0.00 0.00 43.78 1.63
86 87 8.552296 AGATTTGACCTTTTGTCCTACTCATAT 58.448 33.333 0.00 0.00 43.78 1.78
87 88 7.918076 AGATTTGACCTTTTGTCCTACTCATA 58.082 34.615 0.00 0.00 43.78 2.15
88 89 6.784031 AGATTTGACCTTTTGTCCTACTCAT 58.216 36.000 0.00 0.00 43.78 2.90
89 90 6.043243 AGAGATTTGACCTTTTGTCCTACTCA 59.957 38.462 0.00 0.00 43.78 3.41
90 91 6.468543 AGAGATTTGACCTTTTGTCCTACTC 58.531 40.000 0.00 0.00 43.78 2.59
91 92 6.441088 AGAGATTTGACCTTTTGTCCTACT 57.559 37.500 0.00 0.00 43.78 2.57
92 93 8.794335 AATAGAGATTTGACCTTTTGTCCTAC 57.206 34.615 0.00 0.00 43.78 3.18
94 95 9.981460 AATAATAGAGATTTGACCTTTTGTCCT 57.019 29.630 0.00 0.00 43.78 3.85
118 119 9.995003 TCAATTTGCAACAGGTTATAAAGAAAT 57.005 25.926 0.00 0.00 0.00 2.17
119 120 9.823647 TTCAATTTGCAACAGGTTATAAAGAAA 57.176 25.926 0.00 0.00 0.00 2.52
120 121 9.823647 TTTCAATTTGCAACAGGTTATAAAGAA 57.176 25.926 0.00 0.00 0.00 2.52
121 122 9.823647 TTTTCAATTTGCAACAGGTTATAAAGA 57.176 25.926 0.00 0.00 0.00 2.52
124 125 8.502387 GCATTTTCAATTTGCAACAGGTTATAA 58.498 29.630 0.00 0.00 36.40 0.98
125 126 7.658982 TGCATTTTCAATTTGCAACAGGTTATA 59.341 29.630 0.00 0.00 42.95 0.98
126 127 6.485984 TGCATTTTCAATTTGCAACAGGTTAT 59.514 30.769 0.00 0.00 42.95 1.89
127 128 5.819379 TGCATTTTCAATTTGCAACAGGTTA 59.181 32.000 0.00 0.00 42.95 2.85
128 129 4.639310 TGCATTTTCAATTTGCAACAGGTT 59.361 33.333 0.00 0.00 42.95 3.50
129 130 4.197750 TGCATTTTCAATTTGCAACAGGT 58.802 34.783 0.00 0.00 42.95 4.00
130 131 4.815040 TGCATTTTCAATTTGCAACAGG 57.185 36.364 0.00 0.00 42.95 4.00
135 136 2.032204 GCGGTTGCATTTTCAATTTGCA 60.032 40.909 0.00 0.00 44.12 4.08
136 137 2.573282 GCGGTTGCATTTTCAATTTGC 58.427 42.857 0.00 0.00 42.15 3.68
157 158 1.188219 ACGTCCTCACATCAGGCACT 61.188 55.000 0.00 0.00 43.88 4.40
158 159 1.016130 CACGTCCTCACATCAGGCAC 61.016 60.000 0.00 0.00 32.91 5.01
159 160 1.293179 CACGTCCTCACATCAGGCA 59.707 57.895 0.00 0.00 32.91 4.75
160 161 2.103042 GCACGTCCTCACATCAGGC 61.103 63.158 0.00 0.00 32.91 4.85
161 162 0.107993 ATGCACGTCCTCACATCAGG 60.108 55.000 0.00 0.00 34.40 3.86
162 163 1.004595 CATGCACGTCCTCACATCAG 58.995 55.000 0.00 0.00 0.00 2.90
163 164 1.020861 GCATGCACGTCCTCACATCA 61.021 55.000 14.21 0.00 0.00 3.07
164 165 1.020861 TGCATGCACGTCCTCACATC 61.021 55.000 18.46 0.00 0.00 3.06
165 166 0.393402 ATGCATGCACGTCCTCACAT 60.393 50.000 25.37 0.00 0.00 3.21
166 167 0.248843 TATGCATGCACGTCCTCACA 59.751 50.000 25.37 0.00 0.00 3.58
167 168 1.368641 TTATGCATGCACGTCCTCAC 58.631 50.000 25.37 0.00 0.00 3.51
168 169 2.330440 ATTATGCATGCACGTCCTCA 57.670 45.000 25.37 0.00 0.00 3.86
169 170 2.287188 CCAATTATGCATGCACGTCCTC 60.287 50.000 25.37 0.00 0.00 3.71
170 171 1.677576 CCAATTATGCATGCACGTCCT 59.322 47.619 25.37 9.52 0.00 3.85
171 172 1.675483 TCCAATTATGCATGCACGTCC 59.325 47.619 25.37 0.00 0.00 4.79
172 173 2.097304 TGTCCAATTATGCATGCACGTC 59.903 45.455 25.37 8.31 0.00 4.34
173 174 2.090760 TGTCCAATTATGCATGCACGT 58.909 42.857 25.37 11.24 0.00 4.49
174 175 2.097954 ACTGTCCAATTATGCATGCACG 59.902 45.455 25.37 9.13 0.00 5.34
175 176 3.441163 CACTGTCCAATTATGCATGCAC 58.559 45.455 25.37 8.21 0.00 4.57
176 177 2.159212 GCACTGTCCAATTATGCATGCA 60.159 45.455 25.04 25.04 36.30 3.96
177 178 2.100252 AGCACTGTCCAATTATGCATGC 59.900 45.455 11.82 11.82 38.79 4.06
178 179 3.702330 CAGCACTGTCCAATTATGCATG 58.298 45.455 10.16 0.00 38.79 4.06
179 180 2.100252 GCAGCACTGTCCAATTATGCAT 59.900 45.455 3.79 3.79 38.79 3.96
180 181 1.473677 GCAGCACTGTCCAATTATGCA 59.526 47.619 0.00 0.00 38.79 3.96
181 182 1.747355 AGCAGCACTGTCCAATTATGC 59.253 47.619 0.00 0.00 36.52 3.14
182 183 5.506815 CCATTAGCAGCACTGTCCAATTATG 60.507 44.000 0.00 0.00 0.00 1.90
183 184 4.581824 CCATTAGCAGCACTGTCCAATTAT 59.418 41.667 0.00 0.00 0.00 1.28
184 185 3.947196 CCATTAGCAGCACTGTCCAATTA 59.053 43.478 0.00 0.00 0.00 1.40
185 186 2.756760 CCATTAGCAGCACTGTCCAATT 59.243 45.455 0.00 0.00 0.00 2.32
186 187 2.372264 CCATTAGCAGCACTGTCCAAT 58.628 47.619 0.00 0.00 0.00 3.16
187 188 1.614051 CCCATTAGCAGCACTGTCCAA 60.614 52.381 0.00 0.00 0.00 3.53
188 189 0.035152 CCCATTAGCAGCACTGTCCA 60.035 55.000 0.00 0.00 0.00 4.02
189 190 1.379642 GCCCATTAGCAGCACTGTCC 61.380 60.000 0.00 0.00 0.00 4.02
190 191 0.677731 TGCCCATTAGCAGCACTGTC 60.678 55.000 0.00 0.00 38.00 3.51
191 192 0.251297 TTGCCCATTAGCAGCACTGT 60.251 50.000 0.00 0.00 45.13 3.55
192 193 1.108776 ATTGCCCATTAGCAGCACTG 58.891 50.000 0.00 0.00 45.13 3.66
193 194 1.108776 CATTGCCCATTAGCAGCACT 58.891 50.000 0.00 0.00 45.13 4.40
194 195 1.105457 TCATTGCCCATTAGCAGCAC 58.895 50.000 0.00 0.00 45.13 4.40
195 196 1.849977 TTCATTGCCCATTAGCAGCA 58.150 45.000 0.00 0.00 45.13 4.41
196 197 2.750948 CATTCATTGCCCATTAGCAGC 58.249 47.619 0.00 0.00 45.13 5.25
197 198 2.750948 GCATTCATTGCCCATTAGCAG 58.249 47.619 0.00 0.00 46.15 4.24
198 199 2.894763 GCATTCATTGCCCATTAGCA 57.105 45.000 0.00 0.00 46.15 3.49
208 209 2.167693 AGACAAGGCCATGCATTCATTG 59.832 45.455 8.15 16.80 27.16 2.82
209 210 2.167693 CAGACAAGGCCATGCATTCATT 59.832 45.455 8.15 0.00 27.16 2.57
210 211 1.754803 CAGACAAGGCCATGCATTCAT 59.245 47.619 8.15 0.00 27.16 2.57
211 212 1.179152 CAGACAAGGCCATGCATTCA 58.821 50.000 8.15 0.00 27.16 2.57
212 213 0.458669 CCAGACAAGGCCATGCATTC 59.541 55.000 8.15 0.00 27.16 2.67
213 214 0.974010 CCCAGACAAGGCCATGCATT 60.974 55.000 8.15 0.00 30.89 3.56
214 215 1.380785 CCCAGACAAGGCCATGCAT 60.381 57.895 8.15 0.00 0.00 3.96
215 216 2.036098 CCCAGACAAGGCCATGCA 59.964 61.111 8.15 0.00 0.00 3.96
216 217 2.036256 ACCCAGACAAGGCCATGC 59.964 61.111 8.15 0.85 0.00 4.06
217 218 1.746615 CGACCCAGACAAGGCCATG 60.747 63.158 5.01 5.77 0.00 3.66
218 219 2.224159 ACGACCCAGACAAGGCCAT 61.224 57.895 5.01 0.00 0.00 4.40
219 220 2.847234 ACGACCCAGACAAGGCCA 60.847 61.111 5.01 0.00 0.00 5.36
220 221 2.185310 ATCACGACCCAGACAAGGCC 62.185 60.000 0.00 0.00 0.00 5.19
221 222 0.535335 TATCACGACCCAGACAAGGC 59.465 55.000 0.00 0.00 0.00 4.35
222 223 1.825474 ACTATCACGACCCAGACAAGG 59.175 52.381 0.00 0.00 0.00 3.61
223 224 4.920640 ATACTATCACGACCCAGACAAG 57.079 45.455 0.00 0.00 0.00 3.16
224 225 6.293790 CGATTATACTATCACGACCCAGACAA 60.294 42.308 0.00 0.00 0.00 3.18
225 226 5.180680 CGATTATACTATCACGACCCAGACA 59.819 44.000 0.00 0.00 0.00 3.41
226 227 5.391736 CCGATTATACTATCACGACCCAGAC 60.392 48.000 0.00 0.00 0.00 3.51
227 228 4.698780 CCGATTATACTATCACGACCCAGA 59.301 45.833 0.00 0.00 0.00 3.86
228 229 4.698780 TCCGATTATACTATCACGACCCAG 59.301 45.833 0.00 0.00 0.00 4.45
229 230 4.654915 TCCGATTATACTATCACGACCCA 58.345 43.478 0.00 0.00 0.00 4.51
230 231 4.438472 GCTCCGATTATACTATCACGACCC 60.438 50.000 0.00 0.00 0.00 4.46
231 232 4.155462 TGCTCCGATTATACTATCACGACC 59.845 45.833 0.00 0.00 0.00 4.79
232 233 5.292671 TGCTCCGATTATACTATCACGAC 57.707 43.478 0.00 0.00 0.00 4.34
233 234 6.510879 AATGCTCCGATTATACTATCACGA 57.489 37.500 0.00 0.00 0.00 4.35
234 235 6.415280 GCTAATGCTCCGATTATACTATCACG 59.585 42.308 0.00 0.00 36.03 4.35
235 236 6.415280 CGCTAATGCTCCGATTATACTATCAC 59.585 42.308 0.00 0.00 36.97 3.06
236 237 6.095021 ACGCTAATGCTCCGATTATACTATCA 59.905 38.462 0.00 0.00 36.97 2.15
237 238 6.496571 ACGCTAATGCTCCGATTATACTATC 58.503 40.000 0.00 0.00 36.97 2.08
238 239 6.452494 ACGCTAATGCTCCGATTATACTAT 57.548 37.500 0.00 0.00 36.97 2.12
239 240 5.892160 ACGCTAATGCTCCGATTATACTA 57.108 39.130 0.00 0.00 36.97 1.82
240 241 4.785511 ACGCTAATGCTCCGATTATACT 57.214 40.909 0.00 0.00 36.97 2.12
241 242 5.004535 GCTTACGCTAATGCTCCGATTATAC 59.995 44.000 0.00 0.00 36.97 1.47
242 243 5.100259 GCTTACGCTAATGCTCCGATTATA 58.900 41.667 0.00 0.00 36.97 0.98
243 244 3.927142 GCTTACGCTAATGCTCCGATTAT 59.073 43.478 0.00 0.00 36.97 1.28
244 245 3.314553 GCTTACGCTAATGCTCCGATTA 58.685 45.455 0.00 0.00 36.97 1.75
245 246 2.135933 GCTTACGCTAATGCTCCGATT 58.864 47.619 0.00 0.00 36.97 3.34
246 247 1.784525 GCTTACGCTAATGCTCCGAT 58.215 50.000 0.00 0.00 36.97 4.18
247 248 0.594028 CGCTTACGCTAATGCTCCGA 60.594 55.000 0.00 0.00 36.97 4.55
248 249 0.594028 TCGCTTACGCTAATGCTCCG 60.594 55.000 0.00 0.00 39.84 4.63
249 250 1.721926 GATCGCTTACGCTAATGCTCC 59.278 52.381 0.00 0.00 39.84 4.70
250 251 2.667137 AGATCGCTTACGCTAATGCTC 58.333 47.619 0.00 0.00 39.84 4.26
251 252 2.802787 AGATCGCTTACGCTAATGCT 57.197 45.000 0.00 0.00 39.84 3.79
252 253 3.982058 AGTTAGATCGCTTACGCTAATGC 59.018 43.478 0.00 0.00 39.84 3.56
253 254 7.618964 TTAAGTTAGATCGCTTACGCTAATG 57.381 36.000 6.85 0.00 39.84 1.90
254 255 8.813643 ATTTAAGTTAGATCGCTTACGCTAAT 57.186 30.769 6.85 3.45 39.84 1.73
255 256 8.638685 AATTTAAGTTAGATCGCTTACGCTAA 57.361 30.769 6.85 0.00 39.84 3.09
256 257 7.112565 CGAATTTAAGTTAGATCGCTTACGCTA 59.887 37.037 6.85 0.00 39.84 4.26
257 258 6.074994 CGAATTTAAGTTAGATCGCTTACGCT 60.075 38.462 6.85 0.00 39.84 5.07
258 259 6.057043 CGAATTTAAGTTAGATCGCTTACGC 58.943 40.000 6.85 0.00 39.84 4.42
259 260 6.197842 ACCGAATTTAAGTTAGATCGCTTACG 59.802 38.462 6.85 7.32 42.01 3.18
260 261 7.460751 ACCGAATTTAAGTTAGATCGCTTAC 57.539 36.000 6.85 0.00 0.00 2.34
261 262 9.754382 ATAACCGAATTTAAGTTAGATCGCTTA 57.246 29.630 7.94 4.20 30.06 3.09
262 263 6.980051 AACCGAATTTAAGTTAGATCGCTT 57.020 33.333 7.94 5.75 0.00 4.68
263 264 7.114529 CGATAACCGAATTTAAGTTAGATCGCT 59.885 37.037 7.94 0.00 41.76 4.93
264 265 7.113965 TCGATAACCGAATTTAAGTTAGATCGC 59.886 37.037 12.10 0.00 45.43 4.58
265 266 8.498192 TCGATAACCGAATTTAAGTTAGATCG 57.502 34.615 11.34 11.34 45.43 3.69
281 282 3.982701 TGGCGTTATACAATCGATAACCG 59.017 43.478 0.00 0.00 36.73 4.44
282 283 5.333568 GGTTGGCGTTATACAATCGATAACC 60.334 44.000 0.00 0.14 36.73 2.85
283 284 5.464389 AGGTTGGCGTTATACAATCGATAAC 59.536 40.000 0.00 0.00 36.72 1.89
284 285 5.464057 CAGGTTGGCGTTATACAATCGATAA 59.536 40.000 0.00 0.00 33.08 1.75
285 286 4.986034 CAGGTTGGCGTTATACAATCGATA 59.014 41.667 0.00 0.00 33.08 2.92
286 287 3.807622 CAGGTTGGCGTTATACAATCGAT 59.192 43.478 0.00 0.00 33.08 3.59
287 288 3.119065 TCAGGTTGGCGTTATACAATCGA 60.119 43.478 0.00 0.00 33.08 3.59
288 289 3.000925 GTCAGGTTGGCGTTATACAATCG 59.999 47.826 0.00 0.00 33.08 3.34
289 290 3.000925 CGTCAGGTTGGCGTTATACAATC 59.999 47.826 0.00 0.00 41.12 2.67
290 291 2.933906 CGTCAGGTTGGCGTTATACAAT 59.066 45.455 0.00 0.00 41.12 2.71
291 292 2.339418 CGTCAGGTTGGCGTTATACAA 58.661 47.619 0.00 0.00 41.12 2.41
292 293 1.404449 CCGTCAGGTTGGCGTTATACA 60.404 52.381 2.27 0.00 45.14 2.29
293 294 1.135024 TCCGTCAGGTTGGCGTTATAC 60.135 52.381 2.27 0.00 45.14 1.47
294 295 1.184431 TCCGTCAGGTTGGCGTTATA 58.816 50.000 2.27 0.00 45.14 0.98
295 296 0.539986 ATCCGTCAGGTTGGCGTTAT 59.460 50.000 2.27 0.00 45.14 1.89
296 297 0.108520 GATCCGTCAGGTTGGCGTTA 60.109 55.000 2.27 0.00 45.14 3.18
297 298 1.375523 GATCCGTCAGGTTGGCGTT 60.376 57.895 2.27 0.00 45.14 4.84
298 299 2.227089 GAGATCCGTCAGGTTGGCGT 62.227 60.000 2.27 0.00 45.14 5.68
299 300 1.519455 GAGATCCGTCAGGTTGGCG 60.519 63.158 0.00 0.00 46.34 5.69
300 301 0.036388 TTGAGATCCGTCAGGTTGGC 60.036 55.000 0.00 0.00 39.05 4.52
301 302 2.009042 GCTTGAGATCCGTCAGGTTGG 61.009 57.143 0.00 0.00 39.05 3.77
302 303 1.066573 AGCTTGAGATCCGTCAGGTTG 60.067 52.381 0.00 0.00 39.05 3.77
303 304 1.066573 CAGCTTGAGATCCGTCAGGTT 60.067 52.381 0.00 0.00 39.05 3.50
304 305 0.534412 CAGCTTGAGATCCGTCAGGT 59.466 55.000 0.00 0.00 39.05 4.00
305 306 0.809241 GCAGCTTGAGATCCGTCAGG 60.809 60.000 0.00 0.00 39.46 3.86
306 307 0.809241 GGCAGCTTGAGATCCGTCAG 60.809 60.000 0.00 0.00 0.00 3.51
307 308 1.219124 GGCAGCTTGAGATCCGTCA 59.781 57.895 0.00 0.00 0.00 4.35
308 309 1.522580 GGGCAGCTTGAGATCCGTC 60.523 63.158 0.00 0.00 0.00 4.79
309 310 1.992277 AGGGCAGCTTGAGATCCGT 60.992 57.895 0.00 0.00 0.00 4.69
310 311 1.523258 CAGGGCAGCTTGAGATCCG 60.523 63.158 0.00 0.00 0.00 4.18
311 312 0.463474 GACAGGGCAGCTTGAGATCC 60.463 60.000 4.71 0.00 0.00 3.36
312 313 0.540923 AGACAGGGCAGCTTGAGATC 59.459 55.000 4.71 0.00 0.00 2.75
313 314 0.252479 CAGACAGGGCAGCTTGAGAT 59.748 55.000 4.71 0.00 0.00 2.75
314 315 1.675801 CAGACAGGGCAGCTTGAGA 59.324 57.895 4.71 0.00 0.00 3.27
315 316 2.039405 GCAGACAGGGCAGCTTGAG 61.039 63.158 4.71 0.00 0.00 3.02
316 317 2.033141 GCAGACAGGGCAGCTTGA 59.967 61.111 4.71 0.00 0.00 3.02
317 318 2.033757 AGCAGACAGGGCAGCTTG 59.966 61.111 0.00 0.00 32.52 4.01
318 319 2.350514 GAGCAGACAGGGCAGCTT 59.649 61.111 0.00 0.00 37.48 3.74
319 320 2.812218 TAGGAGCAGACAGGGCAGCT 62.812 60.000 0.00 0.00 40.60 4.24
320 321 2.362369 TAGGAGCAGACAGGGCAGC 61.362 63.158 0.00 0.00 0.00 5.25
321 322 1.519719 GTAGGAGCAGACAGGGCAG 59.480 63.158 0.00 0.00 0.00 4.85
322 323 1.990060 GGTAGGAGCAGACAGGGCA 60.990 63.158 0.00 0.00 0.00 5.36
323 324 2.904131 GGTAGGAGCAGACAGGGC 59.096 66.667 0.00 0.00 0.00 5.19
324 325 0.395311 TACGGTAGGAGCAGACAGGG 60.395 60.000 0.00 0.00 0.00 4.45
325 326 1.025812 CTACGGTAGGAGCAGACAGG 58.974 60.000 7.30 0.00 0.00 4.00
326 327 0.382515 GCTACGGTAGGAGCAGACAG 59.617 60.000 16.43 0.00 38.62 3.51
327 328 0.323087 TGCTACGGTAGGAGCAGACA 60.323 55.000 16.43 1.80 43.64 3.41
328 329 2.490165 TGCTACGGTAGGAGCAGAC 58.510 57.895 16.43 0.00 43.64 3.51
331 332 1.742411 GCATTTGCTACGGTAGGAGCA 60.742 52.381 16.43 8.54 46.74 4.26
332 333 0.938008 GCATTTGCTACGGTAGGAGC 59.062 55.000 16.43 9.94 39.25 4.70
333 334 1.583054 GGCATTTGCTACGGTAGGAG 58.417 55.000 16.43 3.97 41.70 3.69
334 335 0.179094 CGGCATTTGCTACGGTAGGA 60.179 55.000 16.43 11.26 41.70 2.94
335 336 0.179094 TCGGCATTTGCTACGGTAGG 60.179 55.000 16.43 1.14 41.70 3.18
336 337 1.865865 ATCGGCATTTGCTACGGTAG 58.134 50.000 10.83 10.83 41.70 3.18
337 338 2.864882 GCTATCGGCATTTGCTACGGTA 60.865 50.000 2.12 0.00 41.70 4.02
338 339 1.865865 CTATCGGCATTTGCTACGGT 58.134 50.000 2.12 0.00 41.70 4.83
339 340 0.512952 GCTATCGGCATTTGCTACGG 59.487 55.000 2.12 0.00 41.70 4.02
350 351 4.632974 CCCCTGGCTGCTATCGGC 62.633 72.222 0.00 0.00 43.83 5.54
351 352 2.844362 TCCCCTGGCTGCTATCGG 60.844 66.667 0.00 0.00 0.00 4.18
352 353 2.739784 CTCCCCTGGCTGCTATCG 59.260 66.667 0.00 0.00 0.00 2.92
353 354 1.460305 TCCTCCCCTGGCTGCTATC 60.460 63.158 0.00 0.00 0.00 2.08
354 355 1.461075 CTCCTCCCCTGGCTGCTAT 60.461 63.158 0.00 0.00 0.00 2.97
355 356 2.041508 CTCCTCCCCTGGCTGCTA 60.042 66.667 0.00 0.00 0.00 3.49
358 359 3.095163 ATGCTCCTCCCCTGGCTG 61.095 66.667 0.00 0.00 0.00 4.85
359 360 3.095163 CATGCTCCTCCCCTGGCT 61.095 66.667 0.00 0.00 0.00 4.75
360 361 4.891037 GCATGCTCCTCCCCTGGC 62.891 72.222 11.37 0.00 0.00 4.85
361 362 2.764737 ATGCATGCTCCTCCCCTGG 61.765 63.158 20.33 0.00 0.00 4.45
362 363 1.528542 CATGCATGCTCCTCCCCTG 60.529 63.158 20.33 0.09 0.00 4.45
363 364 1.695239 TCATGCATGCTCCTCCCCT 60.695 57.895 22.25 0.00 0.00 4.79
364 365 1.527844 GTCATGCATGCTCCTCCCC 60.528 63.158 22.25 0.00 0.00 4.81
365 366 0.818445 CTGTCATGCATGCTCCTCCC 60.818 60.000 22.25 2.64 0.00 4.30
366 367 0.818445 CCTGTCATGCATGCTCCTCC 60.818 60.000 22.25 5.72 0.00 4.30
367 368 1.445716 GCCTGTCATGCATGCTCCTC 61.446 60.000 22.25 9.65 36.10 3.71
368 369 1.453379 GCCTGTCATGCATGCTCCT 60.453 57.895 22.25 0.25 36.10 3.69
369 370 0.179037 TAGCCTGTCATGCATGCTCC 60.179 55.000 22.25 12.16 43.97 4.70
370 371 0.942962 GTAGCCTGTCATGCATGCTC 59.057 55.000 22.25 16.58 43.97 4.26
372 373 1.779025 CGGTAGCCTGTCATGCATGC 61.779 60.000 22.25 11.82 38.73 4.06
373 374 0.179076 TCGGTAGCCTGTCATGCATG 60.179 55.000 21.07 21.07 0.00 4.06
374 375 0.179073 GTCGGTAGCCTGTCATGCAT 60.179 55.000 0.00 0.00 0.00 3.96
375 376 1.218047 GTCGGTAGCCTGTCATGCA 59.782 57.895 2.81 0.00 0.00 3.96
376 377 1.521681 GGTCGGTAGCCTGTCATGC 60.522 63.158 0.00 0.00 0.00 4.06
377 378 1.144057 GGGTCGGTAGCCTGTCATG 59.856 63.158 0.00 0.00 40.33 3.07
378 379 2.064581 GGGGTCGGTAGCCTGTCAT 61.065 63.158 0.00 0.00 43.23 3.06
379 380 2.682494 GGGGTCGGTAGCCTGTCA 60.682 66.667 0.00 0.00 43.23 3.58
380 381 3.468140 GGGGGTCGGTAGCCTGTC 61.468 72.222 0.00 0.00 43.23 3.51
398 399 3.234630 TAGGTGGTGGTGCTCGTGC 62.235 63.158 1.71 1.71 40.20 5.34
399 400 1.374252 GTAGGTGGTGGTGCTCGTG 60.374 63.158 0.00 0.00 0.00 4.35
400 401 2.580601 GGTAGGTGGTGGTGCTCGT 61.581 63.158 0.00 0.00 0.00 4.18
401 402 2.264794 GGTAGGTGGTGGTGCTCG 59.735 66.667 0.00 0.00 0.00 5.03
402 403 2.264794 CGGTAGGTGGTGGTGCTC 59.735 66.667 0.00 0.00 0.00 4.26
403 404 2.525877 ACGGTAGGTGGTGGTGCT 60.526 61.111 0.00 0.00 0.00 4.40
404 405 2.180159 ATCACGGTAGGTGGTGGTGC 62.180 60.000 0.00 0.00 46.96 5.01
405 406 0.108329 GATCACGGTAGGTGGTGGTG 60.108 60.000 0.00 0.00 46.96 4.17
406 407 0.543410 TGATCACGGTAGGTGGTGGT 60.543 55.000 0.00 0.00 46.96 4.16
407 408 0.108329 GTGATCACGGTAGGTGGTGG 60.108 60.000 10.69 0.00 46.96 4.61
408 409 3.436001 GTGATCACGGTAGGTGGTG 57.564 57.895 10.69 0.00 46.96 4.17
419 420 1.589196 GCTCGCCCTACGTGATCAC 60.589 63.158 16.21 16.21 44.19 3.06
420 421 2.782222 GGCTCGCCCTACGTGATCA 61.782 63.158 0.00 0.00 44.19 2.92
421 422 2.017559 AAGGCTCGCCCTACGTGATC 62.018 60.000 3.92 0.00 45.62 2.92
422 423 2.017559 GAAGGCTCGCCCTACGTGAT 62.018 60.000 3.92 0.00 45.62 3.06
423 424 2.678934 AAGGCTCGCCCTACGTGA 60.679 61.111 3.92 0.00 45.62 4.35
424 425 2.202756 GAAGGCTCGCCCTACGTG 60.203 66.667 3.92 0.00 45.62 4.49
425 426 2.362632 AGAAGGCTCGCCCTACGT 60.363 61.111 3.92 0.00 45.62 3.57
426 427 2.122167 AGAGAAGGCTCGCCCTACG 61.122 63.158 3.92 0.00 45.62 3.51
427 428 1.324005 ACAGAGAAGGCTCGCCCTAC 61.324 60.000 3.92 0.00 45.62 3.18
428 429 0.257905 TACAGAGAAGGCTCGCCCTA 59.742 55.000 3.92 0.00 45.62 3.53
430 431 1.324005 ACTACAGAGAAGGCTCGCCC 61.324 60.000 3.92 0.00 45.98 6.13
431 432 1.390565 TACTACAGAGAAGGCTCGCC 58.609 55.000 0.00 0.00 45.98 5.54
432 433 3.376540 CAATACTACAGAGAAGGCTCGC 58.623 50.000 0.00 0.00 45.98 5.03
433 434 3.797184 GCCAATACTACAGAGAAGGCTCG 60.797 52.174 0.00 0.00 45.98 5.03
434 435 3.723260 GCCAATACTACAGAGAAGGCTC 58.277 50.000 0.00 0.00 41.62 4.70
435 436 3.379452 AGCCAATACTACAGAGAAGGCT 58.621 45.455 0.00 0.00 45.71 4.58
436 437 3.133003 TCAGCCAATACTACAGAGAAGGC 59.867 47.826 0.00 0.00 41.08 4.35
437 438 4.160439 TGTCAGCCAATACTACAGAGAAGG 59.840 45.833 0.00 0.00 0.00 3.46
438 439 5.330455 TGTCAGCCAATACTACAGAGAAG 57.670 43.478 0.00 0.00 0.00 2.85
439 440 5.187772 ACATGTCAGCCAATACTACAGAGAA 59.812 40.000 0.00 0.00 0.00 2.87
440 441 4.711846 ACATGTCAGCCAATACTACAGAGA 59.288 41.667 0.00 0.00 0.00 3.10
441 442 4.807834 CACATGTCAGCCAATACTACAGAG 59.192 45.833 0.00 0.00 0.00 3.35
442 443 4.383010 CCACATGTCAGCCAATACTACAGA 60.383 45.833 0.00 0.00 0.00 3.41
443 444 3.873361 CCACATGTCAGCCAATACTACAG 59.127 47.826 0.00 0.00 0.00 2.74
444 445 3.370421 CCCACATGTCAGCCAATACTACA 60.370 47.826 0.00 0.00 0.00 2.74
445 446 3.118408 TCCCACATGTCAGCCAATACTAC 60.118 47.826 0.00 0.00 0.00 2.73
446 447 3.111484 TCCCACATGTCAGCCAATACTA 58.889 45.455 0.00 0.00 0.00 1.82
447 448 1.915489 TCCCACATGTCAGCCAATACT 59.085 47.619 0.00 0.00 0.00 2.12
448 449 2.017049 GTCCCACATGTCAGCCAATAC 58.983 52.381 0.00 0.00 0.00 1.89
449 450 1.064758 GGTCCCACATGTCAGCCAATA 60.065 52.381 0.00 0.00 0.00 1.90
450 451 0.323725 GGTCCCACATGTCAGCCAAT 60.324 55.000 0.00 0.00 0.00 3.16
451 452 1.074775 GGTCCCACATGTCAGCCAA 59.925 57.895 0.00 0.00 0.00 4.52
452 453 2.756400 GGTCCCACATGTCAGCCA 59.244 61.111 0.00 0.00 0.00 4.75
453 454 2.436646 CGGTCCCACATGTCAGCC 60.437 66.667 0.00 0.00 0.00 4.85
454 455 2.238847 TAGCGGTCCCACATGTCAGC 62.239 60.000 0.00 0.00 0.00 4.26
455 456 0.179100 CTAGCGGTCCCACATGTCAG 60.179 60.000 0.00 0.00 0.00 3.51
456 457 1.897423 CTAGCGGTCCCACATGTCA 59.103 57.895 0.00 0.00 0.00 3.58
457 458 1.521681 GCTAGCGGTCCCACATGTC 60.522 63.158 0.00 0.00 0.00 3.06
458 459 1.836999 TTGCTAGCGGTCCCACATGT 61.837 55.000 10.77 0.00 0.00 3.21
459 460 1.078497 TTGCTAGCGGTCCCACATG 60.078 57.895 10.77 0.00 0.00 3.21
460 461 1.078426 GTTGCTAGCGGTCCCACAT 60.078 57.895 10.77 0.00 0.00 3.21
461 462 1.764571 AAGTTGCTAGCGGTCCCACA 61.765 55.000 10.77 0.00 0.00 4.17
462 463 1.003718 AAGTTGCTAGCGGTCCCAC 60.004 57.895 10.77 0.00 0.00 4.61
463 464 1.003839 CAAGTTGCTAGCGGTCCCA 60.004 57.895 10.77 0.00 0.00 4.37
464 465 1.745489 CCAAGTTGCTAGCGGTCCC 60.745 63.158 10.77 0.00 0.00 4.46
465 466 2.399356 GCCAAGTTGCTAGCGGTCC 61.399 63.158 10.77 0.00 0.00 4.46
466 467 2.399356 GGCCAAGTTGCTAGCGGTC 61.399 63.158 10.77 1.94 0.00 4.79
467 468 2.359975 GGCCAAGTTGCTAGCGGT 60.360 61.111 10.77 0.00 0.00 5.68
468 469 3.134127 GGGCCAAGTTGCTAGCGG 61.134 66.667 10.77 5.70 0.00 5.52
469 470 2.359850 TGGGCCAAGTTGCTAGCG 60.360 61.111 2.13 0.00 0.00 4.26
470 471 0.967380 ATGTGGGCCAAGTTGCTAGC 60.967 55.000 8.40 8.10 0.00 3.42
471 472 0.813184 CATGTGGGCCAAGTTGCTAG 59.187 55.000 8.40 0.00 0.00 3.42
472 473 0.112218 ACATGTGGGCCAAGTTGCTA 59.888 50.000 8.40 0.00 0.00 3.49
473 474 1.152483 ACATGTGGGCCAAGTTGCT 60.152 52.632 8.40 0.00 0.00 3.91
474 475 1.290009 GACATGTGGGCCAAGTTGC 59.710 57.895 8.40 0.00 0.00 4.17
475 476 0.599558 CTGACATGTGGGCCAAGTTG 59.400 55.000 8.40 9.04 0.00 3.16
476 477 0.185901 ACTGACATGTGGGCCAAGTT 59.814 50.000 8.40 0.00 0.00 2.66
477 478 0.538057 CACTGACATGTGGGCCAAGT 60.538 55.000 8.40 7.65 34.56 3.16
478 479 0.250858 TCACTGACATGTGGGCCAAG 60.251 55.000 8.40 2.81 38.40 3.61
479 480 0.537143 GTCACTGACATGTGGGCCAA 60.537 55.000 8.40 0.00 38.40 4.52
480 481 1.073025 GTCACTGACATGTGGGCCA 59.927 57.895 1.15 0.00 38.40 5.36
481 482 1.675641 GGTCACTGACATGTGGGCC 60.676 63.158 1.15 0.00 38.40 5.80
482 483 1.675641 GGGTCACTGACATGTGGGC 60.676 63.158 1.15 0.00 38.40 5.36
483 484 1.002134 GGGGTCACTGACATGTGGG 60.002 63.158 1.15 0.00 38.40 4.61
484 485 1.002134 GGGGGTCACTGACATGTGG 60.002 63.158 1.15 0.00 38.40 4.17
485 486 1.375908 CGGGGGTCACTGACATGTG 60.376 63.158 1.15 0.00 39.15 3.21
486 487 2.592993 CCGGGGGTCACTGACATGT 61.593 63.158 11.34 0.00 33.68 3.21
487 488 2.268920 CCGGGGGTCACTGACATG 59.731 66.667 11.34 0.00 33.68 3.21
488 489 3.717294 GCCGGGGGTCACTGACAT 61.717 66.667 11.34 0.00 33.68 3.06
490 491 4.394712 CTGCCGGGGGTCACTGAC 62.395 72.222 2.18 0.00 0.00 3.51
491 492 4.631740 TCTGCCGGGGGTCACTGA 62.632 66.667 2.18 0.00 0.00 3.41
492 493 4.087892 CTCTGCCGGGGGTCACTG 62.088 72.222 2.18 0.00 0.00 3.66
495 496 4.649705 TTCCTCTGCCGGGGGTCA 62.650 66.667 2.18 0.00 0.00 4.02
496 497 2.211468 ATTTTCCTCTGCCGGGGGTC 62.211 60.000 2.18 0.00 0.00 4.46
497 498 0.917333 TATTTTCCTCTGCCGGGGGT 60.917 55.000 2.18 0.00 0.00 4.95
498 499 0.478507 ATATTTTCCTCTGCCGGGGG 59.521 55.000 2.18 0.00 0.00 5.40
499 500 1.956477 CAATATTTTCCTCTGCCGGGG 59.044 52.381 2.18 0.00 0.00 5.73
500 501 1.338020 GCAATATTTTCCTCTGCCGGG 59.662 52.381 2.18 0.00 0.00 5.73
501 502 2.023673 TGCAATATTTTCCTCTGCCGG 58.976 47.619 0.00 0.00 31.92 6.13
502 503 3.996150 ATGCAATATTTTCCTCTGCCG 57.004 42.857 0.00 0.00 31.92 5.69
503 504 5.477984 TGGATATGCAATATTTTCCTCTGCC 59.522 40.000 0.00 0.00 40.26 4.85
504 505 6.385033 GTGGATATGCAATATTTTCCTCTGC 58.615 40.000 0.00 0.00 40.26 4.26
505 506 6.348786 CGGTGGATATGCAATATTTTCCTCTG 60.349 42.308 0.00 0.00 40.26 3.35
506 507 5.707298 CGGTGGATATGCAATATTTTCCTCT 59.293 40.000 0.00 0.00 40.26 3.69
507 508 5.106157 CCGGTGGATATGCAATATTTTCCTC 60.106 44.000 0.00 0.00 40.26 3.71
508 509 4.766891 CCGGTGGATATGCAATATTTTCCT 59.233 41.667 0.00 0.00 40.26 3.36
509 510 4.522789 ACCGGTGGATATGCAATATTTTCC 59.477 41.667 6.12 0.00 40.26 3.13
510 511 5.705609 ACCGGTGGATATGCAATATTTTC 57.294 39.130 6.12 0.00 40.26 2.29
511 512 6.539173 TCTACCGGTGGATATGCAATATTTT 58.461 36.000 17.81 0.00 40.26 1.82
512 513 6.121776 TCTACCGGTGGATATGCAATATTT 57.878 37.500 17.81 0.00 40.26 1.40
513 514 5.755409 TCTACCGGTGGATATGCAATATT 57.245 39.130 17.81 0.00 40.26 1.28
514 515 5.425217 TGATCTACCGGTGGATATGCAATAT 59.575 40.000 30.85 9.02 43.59 1.28
515 516 4.775253 TGATCTACCGGTGGATATGCAATA 59.225 41.667 30.85 10.55 30.61 1.90
516 517 3.582647 TGATCTACCGGTGGATATGCAAT 59.417 43.478 30.85 10.56 30.61 3.56
517 518 2.969262 TGATCTACCGGTGGATATGCAA 59.031 45.455 30.85 13.17 30.61 4.08
518 519 2.604139 TGATCTACCGGTGGATATGCA 58.396 47.619 30.85 21.98 30.61 3.96
519 520 3.589988 CTTGATCTACCGGTGGATATGC 58.410 50.000 30.85 19.80 30.61 3.14
520 521 3.589988 GCTTGATCTACCGGTGGATATG 58.410 50.000 30.85 22.86 30.61 1.78
521 522 2.567615 GGCTTGATCTACCGGTGGATAT 59.432 50.000 30.85 13.69 30.61 1.63
522 523 1.968493 GGCTTGATCTACCGGTGGATA 59.032 52.381 30.85 17.03 30.61 2.59
523 524 0.759346 GGCTTGATCTACCGGTGGAT 59.241 55.000 31.18 31.18 33.28 3.41
524 525 0.616395 TGGCTTGATCTACCGGTGGA 60.616 55.000 23.93 23.93 0.00 4.02
525 526 0.469917 ATGGCTTGATCTACCGGTGG 59.530 55.000 19.93 16.15 0.00 4.61
526 527 1.138859 TGATGGCTTGATCTACCGGTG 59.861 52.381 19.93 7.59 0.00 4.94
527 528 1.496060 TGATGGCTTGATCTACCGGT 58.504 50.000 13.98 13.98 0.00 5.28
528 529 2.420642 CATGATGGCTTGATCTACCGG 58.579 52.381 0.00 0.00 0.00 5.28
529 530 1.802960 GCATGATGGCTTGATCTACCG 59.197 52.381 0.00 0.00 0.00 4.02
530 531 2.551459 GTGCATGATGGCTTGATCTACC 59.449 50.000 0.00 0.00 34.04 3.18
531 532 3.474600 AGTGCATGATGGCTTGATCTAC 58.525 45.455 0.00 0.00 34.04 2.59
532 533 3.495629 GGAGTGCATGATGGCTTGATCTA 60.496 47.826 0.00 0.00 34.04 1.98
533 534 2.573369 GAGTGCATGATGGCTTGATCT 58.427 47.619 0.00 0.00 34.04 2.75
534 535 1.607628 GGAGTGCATGATGGCTTGATC 59.392 52.381 0.00 0.00 34.04 2.92
535 536 1.688772 GGAGTGCATGATGGCTTGAT 58.311 50.000 0.00 0.00 34.04 2.57
536 537 0.394762 GGGAGTGCATGATGGCTTGA 60.395 55.000 0.00 0.00 34.04 3.02
537 538 1.389609 GGGGAGTGCATGATGGCTTG 61.390 60.000 0.00 0.00 34.04 4.01
538 539 1.076485 GGGGAGTGCATGATGGCTT 60.076 57.895 0.00 0.00 34.04 4.35
539 540 2.599597 GGGGAGTGCATGATGGCT 59.400 61.111 0.00 0.00 34.04 4.75
540 541 2.520260 GGGGGAGTGCATGATGGC 60.520 66.667 0.00 0.00 0.00 4.40
541 542 1.454479 GTGGGGGAGTGCATGATGG 60.454 63.158 0.00 0.00 0.00 3.51
542 543 0.750546 CAGTGGGGGAGTGCATGATG 60.751 60.000 0.00 0.00 0.00 3.07
543 544 1.611419 CAGTGGGGGAGTGCATGAT 59.389 57.895 0.00 0.00 0.00 2.45
544 545 2.605607 CCAGTGGGGGAGTGCATGA 61.606 63.158 0.00 0.00 0.00 3.07
545 546 2.044650 CCAGTGGGGGAGTGCATG 60.045 66.667 0.00 0.00 0.00 4.06
546 547 2.204136 TCCAGTGGGGGAGTGCAT 60.204 61.111 9.92 0.00 37.22 3.96
552 553 2.124411 GCTATTTACTCCAGTGGGGGA 58.876 52.381 15.21 0.00 36.40 4.81
553 554 1.843851 TGCTATTTACTCCAGTGGGGG 59.156 52.381 15.21 7.74 42.10 5.40
554 555 3.864789 ATGCTATTTACTCCAGTGGGG 57.135 47.619 7.77 7.77 38.37 4.96
555 556 6.828785 AGTTTTATGCTATTTACTCCAGTGGG 59.171 38.462 9.92 2.47 0.00 4.61
556 557 7.865706 AGTTTTATGCTATTTACTCCAGTGG 57.134 36.000 1.40 1.40 0.00 4.00
557 558 9.601217 AGTAGTTTTATGCTATTTACTCCAGTG 57.399 33.333 0.00 0.00 0.00 3.66
830 861 1.598132 GAGCGAGCACGAGATAGTGTA 59.402 52.381 8.01 0.00 43.61 2.90
836 867 3.462333 GAGCGAGCGAGCACGAGAT 62.462 63.158 18.12 3.62 42.66 2.75
954 1044 0.106149 AGCTGGTTTCCTCGTCGTTT 59.894 50.000 0.00 0.00 0.00 3.60
1040 1142 3.210098 AGCACCTAACCCTAACCCTAA 57.790 47.619 0.00 0.00 0.00 2.69
1041 1143 2.955200 AGCACCTAACCCTAACCCTA 57.045 50.000 0.00 0.00 0.00 3.53
1042 1144 2.045465 ACTAGCACCTAACCCTAACCCT 59.955 50.000 0.00 0.00 0.00 4.34
1043 1145 2.475155 ACTAGCACCTAACCCTAACCC 58.525 52.381 0.00 0.00 0.00 4.11
1044 1146 3.069300 GCTACTAGCACCTAACCCTAACC 59.931 52.174 2.96 0.00 41.89 2.85
1045 1147 3.069300 GGCTACTAGCACCTAACCCTAAC 59.931 52.174 10.27 0.00 44.75 2.34
1518 1631 6.542005 TGTGACTGTCATATCAAACAAAGTGT 59.458 34.615 14.37 0.00 0.00 3.55
1673 1822 4.161189 ACACCACAATTCACACCATTTTCA 59.839 37.500 0.00 0.00 0.00 2.69
2128 2322 6.115446 AGAACATCTCTGTCAACTTCAACAA 58.885 36.000 0.00 0.00 33.36 2.83
2219 2515 4.940654 GCCTTGATTTGCTCTAACTTCTCT 59.059 41.667 0.00 0.00 0.00 3.10
2428 2749 6.653020 AGCATAAGAGATCCATTACAACACA 58.347 36.000 0.00 0.00 0.00 3.72
2578 2900 2.689723 GCCACTAAGCCCAATTACCCAT 60.690 50.000 0.00 0.00 0.00 4.00
2706 3030 0.462375 GTTTTCTTTTGGGTGGCGGT 59.538 50.000 0.00 0.00 0.00 5.68
2758 3083 1.162085 ACAGCCTCCCCTCTTCCTT 59.838 57.895 0.00 0.00 0.00 3.36
2810 3142 2.520741 CGCCTCCTCCTCCTCCTC 60.521 72.222 0.00 0.00 0.00 3.71
2811 3143 4.851214 GCGCCTCCTCCTCCTCCT 62.851 72.222 0.00 0.00 0.00 3.69
3234 3619 7.426929 CTGACCAAGTGCATTATAAGATACC 57.573 40.000 0.00 0.00 0.00 2.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.