Multiple sequence alignment - TraesCS7D01G145200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G145200 chr7D 100.000 4211 0 0 1 4211 92592912 92588702 0.000000e+00 7777
1 TraesCS7D01G145200 chr7D 98.856 437 5 0 3775 4211 410950487 410950051 0.000000e+00 780
2 TraesCS7D01G145200 chr7D 98.636 440 5 1 3772 4211 289486015 289485577 0.000000e+00 778
3 TraesCS7D01G145200 chr7D 80.896 937 143 23 2471 3399 92418757 92417849 0.000000e+00 706
4 TraesCS7D01G145200 chr7A 96.120 3067 107 5 714 3777 94776370 94773313 0.000000e+00 4994
5 TraesCS7D01G145200 chr7A 82.387 2447 359 44 978 3396 94490217 94487815 0.000000e+00 2065
6 TraesCS7D01G145200 chr7A 93.487 737 42 1 1 731 94777166 94776430 0.000000e+00 1090
7 TraesCS7D01G145200 chr7B 93.471 2282 130 9 902 3178 44562042 44559775 0.000000e+00 3371
8 TraesCS7D01G145200 chr7B 88.191 398 39 5 483 877 44562429 44562037 6.370000e-128 468
9 TraesCS7D01G145200 chr6D 99.083 436 4 0 3776 4211 353923987 353923552 0.000000e+00 784
10 TraesCS7D01G145200 chr6D 98.853 436 5 0 3776 4211 21962514 21962079 0.000000e+00 778
11 TraesCS7D01G145200 chr6D 98.853 436 5 0 3776 4211 60694431 60694866 0.000000e+00 778
12 TraesCS7D01G145200 chr6D 98.853 436 5 0 3776 4211 355224573 355225008 0.000000e+00 778
13 TraesCS7D01G145200 chr6D 98.853 436 5 0 3776 4211 414529563 414529128 0.000000e+00 778
14 TraesCS7D01G145200 chr1D 99.083 436 4 0 3776 4211 392518425 392518860 0.000000e+00 784
15 TraesCS7D01G145200 chr4D 98.853 436 5 0 3776 4211 89400513 89400078 0.000000e+00 778
16 TraesCS7D01G145200 chr3B 83.333 360 53 6 3417 3775 708052178 708052531 4.060000e-85 326
17 TraesCS7D01G145200 chr3D 82.085 307 45 7 3435 3734 358194079 358194382 1.940000e-63 254
18 TraesCS7D01G145200 chr4B 85.484 186 20 6 3591 3775 667562901 667562722 2.000000e-43 187
19 TraesCS7D01G145200 chr6B 97.015 67 2 0 3708 3774 652314671 652314737 3.440000e-21 113


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G145200 chr7D 92588702 92592912 4210 True 7777.0 7777 100.0000 1 4211 1 chr7D.!!$R2 4210
1 TraesCS7D01G145200 chr7D 92417849 92418757 908 True 706.0 706 80.8960 2471 3399 1 chr7D.!!$R1 928
2 TraesCS7D01G145200 chr7A 94773313 94777166 3853 True 3042.0 4994 94.8035 1 3777 2 chr7A.!!$R2 3776
3 TraesCS7D01G145200 chr7A 94487815 94490217 2402 True 2065.0 2065 82.3870 978 3396 1 chr7A.!!$R1 2418
4 TraesCS7D01G145200 chr7B 44559775 44562429 2654 True 1919.5 3371 90.8310 483 3178 2 chr7B.!!$R1 2695

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
112 113 0.104855 CCTGCTACTATGCTTGGCGA 59.895 55.0 0.00 0.0 0.00 5.54 F
123 124 0.533755 GCTTGGCGATGCTATCCAGT 60.534 55.0 0.00 0.0 0.00 4.00 F
1267 1360 0.944386 ACTTGCAAGCAGTGGTAACG 59.056 50.0 26.27 0.0 42.51 3.18 F
2466 2559 0.040058 TCAATGTCATTGGGCTGCCT 59.960 50.0 22.44 0.0 40.61 4.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1505 1598 1.081174 TGGATGGAGGAAGAGGACCTT 59.919 52.381 0.00 0.0 37.93 3.50 R
1517 1610 3.244561 ACTGGTGTGTACTTTGGATGGAG 60.245 47.826 0.00 0.0 0.00 3.86 R
2821 2917 0.034756 TTGCCTTCGTAGCTGCTCAA 59.965 50.000 4.91 0.0 0.00 3.02 R
4140 4259 0.307760 GCACACAAAGTGTTCCTCCG 59.692 55.000 0.00 0.0 45.08 4.63 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
112 113 0.104855 CCTGCTACTATGCTTGGCGA 59.895 55.000 0.00 0.00 0.00 5.54
123 124 0.533755 GCTTGGCGATGCTATCCAGT 60.534 55.000 0.00 0.00 0.00 4.00
130 131 2.388890 GATGCTATCCAGTGGCGGCT 62.389 60.000 11.43 0.00 37.07 5.52
202 203 1.194772 GCCAGTTCAACTACAACTCGC 59.805 52.381 0.00 0.00 32.03 5.03
276 283 2.357517 CCCACAGCTCGTGTCACC 60.358 66.667 13.06 0.00 44.78 4.02
288 295 4.131088 GTCACCGGCCTCGACCTC 62.131 72.222 0.00 0.00 39.00 3.85
294 301 2.490148 CGGCCTCGACCTCAGCATA 61.490 63.158 0.00 0.00 39.00 3.14
421 428 2.469516 CCCGGTGCAGGTAATTCGC 61.470 63.158 0.00 0.00 0.00 4.70
441 448 3.057596 CGCCCAGACTCTCTAGATTCATC 60.058 52.174 0.00 0.00 0.00 2.92
442 449 3.258123 GCCCAGACTCTCTAGATTCATCC 59.742 52.174 0.00 0.00 0.00 3.51
445 452 5.139727 CCAGACTCTCTAGATTCATCCAGT 58.860 45.833 0.00 0.00 0.00 4.00
448 455 4.285020 ACTCTCTAGATTCATCCAGTGCA 58.715 43.478 0.00 0.00 0.00 4.57
459 466 3.698539 TCATCCAGTGCAGTTTTCAAACA 59.301 39.130 5.26 0.00 41.30 2.83
476 483 5.698832 TCAAACAAATTATGCTGTTCTCCG 58.301 37.500 0.00 0.00 34.71 4.63
614 623 2.376109 GAGAGTGACGTCCCATCCTTA 58.624 52.381 14.12 0.00 0.00 2.69
768 855 3.128242 GCCAGTCACATCTTCCAAATCAG 59.872 47.826 0.00 0.00 0.00 2.90
781 868 5.710513 TCCAAATCAGTTCTCATGGTTTG 57.289 39.130 4.99 4.99 44.65 2.93
1056 1143 9.183368 GACAATCTTTTATTTGGAGAGATTCCT 57.817 33.333 0.00 0.00 46.92 3.36
1109 1196 3.777465 TCTCGGTCTGTCGGAAAATAG 57.223 47.619 0.00 0.00 0.00 1.73
1157 1244 8.169977 TCTCTTATCTTTGCAAAACTCACATT 57.830 30.769 13.84 0.00 0.00 2.71
1260 1353 1.767759 AACTGGAACTTGCAAGCAGT 58.232 45.000 26.27 25.03 31.19 4.40
1267 1360 0.944386 ACTTGCAAGCAGTGGTAACG 59.056 50.000 26.27 0.00 42.51 3.18
1505 1598 5.152934 AGTTCTGGGTAGTAACTCCTTTGA 58.847 41.667 0.00 0.00 0.00 2.69
1776 1869 7.648142 TGTCAAACATCATTGGTCTAAAACTC 58.352 34.615 0.00 0.00 0.00 3.01
1889 1982 6.127619 GGGAAAATTCCTGAGAAGTTATGTGG 60.128 42.308 11.75 0.00 46.72 4.17
2033 2126 0.742505 ATTCCGTCGGAAGTATGCGA 59.257 50.000 29.12 6.67 45.48 5.10
2244 2337 4.195416 CAAAGCTGATAGGGAAGTCCTTC 58.805 47.826 0.00 0.00 45.47 3.46
2466 2559 0.040058 TCAATGTCATTGGGCTGCCT 59.960 50.000 22.44 0.00 40.61 4.75
2505 2598 1.531365 CAAGGGCAGGCAGGACAAA 60.531 57.895 0.00 0.00 0.00 2.83
2765 2861 2.191354 CTTGCGGTGTCAGTGGCATG 62.191 60.000 0.00 0.00 35.03 4.06
2775 2871 0.390124 CAGTGGCATGCAACAACCTT 59.610 50.000 26.79 2.79 0.00 3.50
2821 2917 3.196254 GGGGCAGTTCATCACATTTGATT 59.804 43.478 0.00 0.00 40.79 2.57
2822 2918 4.322953 GGGGCAGTTCATCACATTTGATTT 60.323 41.667 0.00 0.00 40.79 2.17
2879 2984 4.443315 CCCACCATTGAAAAAGAGTTGCTT 60.443 41.667 0.00 0.00 38.88 3.91
2882 2987 4.571984 ACCATTGAAAAAGAGTTGCTTTGC 59.428 37.500 0.00 0.00 45.85 3.68
2886 2991 2.105323 AAAAGAGTTGCTTTGCGACG 57.895 45.000 4.52 0.00 45.85 5.12
2920 3025 3.997021 TGAGCTCGAAGAAAATGGAGAAC 59.003 43.478 9.64 0.00 34.09 3.01
2922 3027 3.999663 AGCTCGAAGAAAATGGAGAACAG 59.000 43.478 0.00 0.00 34.09 3.16
2938 3046 5.586643 GGAGAACAGGATGATAAAGTTGGTC 59.413 44.000 0.00 0.00 39.69 4.02
3028 3136 2.143925 ACTTTAAGACAAGCTGGCGAC 58.856 47.619 0.00 0.00 0.00 5.19
3186 3294 8.803235 TGTGTGATACTAGTAGAACAACTCAAT 58.197 33.333 17.53 0.00 0.00 2.57
3197 3305 3.078594 ACAACTCAATTCAACGGTTGC 57.921 42.857 15.89 0.00 40.29 4.17
3198 3306 2.425312 ACAACTCAATTCAACGGTTGCA 59.575 40.909 15.89 5.78 40.29 4.08
3410 3529 9.515226 TTAAGCCACTTTCTTAGTCATTGTTAT 57.485 29.630 0.00 0.00 33.85 1.89
3419 3538 9.719355 TTTCTTAGTCATTGTTATCTGCAACTA 57.281 29.630 0.00 0.00 0.00 2.24
3426 3545 5.414789 TTGTTATCTGCAACTAGTAGGCA 57.585 39.130 18.01 18.01 35.96 4.75
3429 3548 6.749139 TGTTATCTGCAACTAGTAGGCATAG 58.251 40.000 19.00 10.95 36.87 2.23
3436 3555 0.528470 CTAGTAGGCATAGGAGCGGC 59.472 60.000 0.00 0.00 34.64 6.53
3481 3600 3.133691 CCTATGCATGCATCTACGTTGT 58.866 45.455 35.35 13.09 37.82 3.32
3482 3601 3.561310 CCTATGCATGCATCTACGTTGTT 59.439 43.478 35.35 12.31 37.82 2.83
3545 3664 1.003839 CCAGCTGGCCACGTAGAAA 60.004 57.895 22.33 0.00 0.00 2.52
3586 3705 8.873215 ATCATTGTACGATCAAGGTAGTTTAG 57.127 34.615 0.00 0.00 32.13 1.85
3587 3706 8.058667 TCATTGTACGATCAAGGTAGTTTAGA 57.941 34.615 0.00 0.00 32.13 2.10
3644 3763 7.176515 ACATGAAAACTCAATACCTGCATTACA 59.823 33.333 0.00 0.00 0.00 2.41
3769 3888 5.568482 TGTCTTTTGAAATTCGGCATATCG 58.432 37.500 0.00 0.00 0.00 2.92
3777 3896 2.492019 TTCGGCATATCGTGTCTCTG 57.508 50.000 0.00 0.00 0.00 3.35
3778 3897 0.668535 TCGGCATATCGTGTCTCTGG 59.331 55.000 0.00 0.00 0.00 3.86
3779 3898 0.668535 CGGCATATCGTGTCTCTGGA 59.331 55.000 0.00 0.00 0.00 3.86
3780 3899 1.335415 CGGCATATCGTGTCTCTGGAG 60.335 57.143 0.00 0.00 0.00 3.86
3781 3900 1.000283 GGCATATCGTGTCTCTGGAGG 60.000 57.143 0.00 0.00 0.00 4.30
3782 3901 1.957177 GCATATCGTGTCTCTGGAGGA 59.043 52.381 0.00 0.00 0.00 3.71
3783 3902 2.362397 GCATATCGTGTCTCTGGAGGAA 59.638 50.000 0.00 0.00 0.00 3.36
3784 3903 3.181475 GCATATCGTGTCTCTGGAGGAAA 60.181 47.826 0.00 0.00 0.00 3.13
3785 3904 4.502259 GCATATCGTGTCTCTGGAGGAAAT 60.502 45.833 0.00 0.00 0.00 2.17
3786 3905 5.279006 GCATATCGTGTCTCTGGAGGAAATA 60.279 44.000 0.00 0.00 0.00 1.40
3787 3906 6.573289 GCATATCGTGTCTCTGGAGGAAATAT 60.573 42.308 0.00 0.00 0.00 1.28
3788 3907 4.655762 TCGTGTCTCTGGAGGAAATATG 57.344 45.455 0.00 0.00 0.00 1.78
3789 3908 3.126831 CGTGTCTCTGGAGGAAATATGC 58.873 50.000 0.00 0.00 0.00 3.14
3790 3909 3.471680 GTGTCTCTGGAGGAAATATGCC 58.528 50.000 0.00 0.00 0.00 4.40
3791 3910 2.439507 TGTCTCTGGAGGAAATATGCCC 59.560 50.000 0.00 0.00 0.00 5.36
3792 3911 2.708325 GTCTCTGGAGGAAATATGCCCT 59.292 50.000 0.00 0.00 35.02 5.19
3793 3912 3.904339 GTCTCTGGAGGAAATATGCCCTA 59.096 47.826 0.00 0.00 31.84 3.53
3794 3913 4.020662 GTCTCTGGAGGAAATATGCCCTAG 60.021 50.000 0.00 0.00 31.84 3.02
3795 3914 4.140686 TCTCTGGAGGAAATATGCCCTAGA 60.141 45.833 0.00 0.00 31.84 2.43
3796 3915 4.163427 TCTGGAGGAAATATGCCCTAGAG 58.837 47.826 0.00 0.00 31.84 2.43
3797 3916 3.251484 TGGAGGAAATATGCCCTAGAGG 58.749 50.000 0.00 0.00 39.47 3.69
3872 3991 6.785488 TCATGCTAGAATTGTATTAAGCGG 57.215 37.500 0.00 0.00 32.67 5.52
3873 3992 6.521162 TCATGCTAGAATTGTATTAAGCGGA 58.479 36.000 0.00 0.00 32.67 5.54
3874 3993 6.989759 TCATGCTAGAATTGTATTAAGCGGAA 59.010 34.615 0.00 0.00 32.67 4.30
3875 3994 7.497579 TCATGCTAGAATTGTATTAAGCGGAAA 59.502 33.333 0.00 0.00 32.67 3.13
3876 3995 7.011828 TGCTAGAATTGTATTAAGCGGAAAC 57.988 36.000 0.00 0.00 32.67 2.78
3877 3996 6.596106 TGCTAGAATTGTATTAAGCGGAAACA 59.404 34.615 0.00 0.00 32.67 2.83
3878 3997 7.282224 TGCTAGAATTGTATTAAGCGGAAACAT 59.718 33.333 0.00 0.00 32.67 2.71
3879 3998 8.770828 GCTAGAATTGTATTAAGCGGAAACATA 58.229 33.333 0.00 0.00 0.00 2.29
3887 4006 9.332502 TGTATTAAGCGGAAACATAATACATGT 57.667 29.630 2.69 2.69 42.13 3.21
3888 4007 9.594038 GTATTAAGCGGAAACATAATACATGTG 57.406 33.333 9.11 0.00 39.40 3.21
3889 4008 7.618502 TTAAGCGGAAACATAATACATGTGT 57.381 32.000 9.11 0.00 31.80 3.72
3890 4009 5.484173 AGCGGAAACATAATACATGTGTG 57.516 39.130 9.11 4.81 31.80 3.82
3891 4010 5.182487 AGCGGAAACATAATACATGTGTGA 58.818 37.500 9.11 0.00 31.80 3.58
3892 4011 5.645929 AGCGGAAACATAATACATGTGTGAA 59.354 36.000 9.11 0.00 31.80 3.18
3893 4012 6.318648 AGCGGAAACATAATACATGTGTGAAT 59.681 34.615 9.11 0.00 31.80 2.57
3894 4013 7.497579 AGCGGAAACATAATACATGTGTGAATA 59.502 33.333 9.11 0.00 31.80 1.75
3895 4014 7.586300 GCGGAAACATAATACATGTGTGAATAC 59.414 37.037 9.11 0.00 31.80 1.89
3896 4015 8.608317 CGGAAACATAATACATGTGTGAATACA 58.392 33.333 9.11 0.00 34.63 2.29
3906 4025 7.977789 ACATGTGTGAATACATAGACAAACA 57.022 32.000 0.00 0.00 39.17 2.83
3907 4026 8.032952 ACATGTGTGAATACATAGACAAACAG 57.967 34.615 0.00 0.00 39.17 3.16
3908 4027 7.877612 ACATGTGTGAATACATAGACAAACAGA 59.122 33.333 0.00 0.00 39.17 3.41
3909 4028 7.889589 TGTGTGAATACATAGACAAACAGAG 57.110 36.000 0.00 0.00 39.39 3.35
3910 4029 7.441836 TGTGTGAATACATAGACAAACAGAGT 58.558 34.615 0.00 0.00 39.39 3.24
3911 4030 7.384932 TGTGTGAATACATAGACAAACAGAGTG 59.615 37.037 0.00 0.00 39.39 3.51
3912 4031 7.385205 GTGTGAATACATAGACAAACAGAGTGT 59.615 37.037 0.00 0.00 39.39 3.55
3913 4032 7.598869 TGTGAATACATAGACAAACAGAGTGTC 59.401 37.037 0.00 0.00 44.75 3.67
3914 4033 7.598869 GTGAATACATAGACAAACAGAGTGTCA 59.401 37.037 7.26 0.00 46.44 3.58
3915 4034 7.598869 TGAATACATAGACAAACAGAGTGTCAC 59.401 37.037 7.26 0.00 46.44 3.67
3916 4035 5.537300 ACATAGACAAACAGAGTGTCACT 57.463 39.130 4.81 4.81 46.44 3.41
3917 4036 6.650427 ACATAGACAAACAGAGTGTCACTA 57.350 37.500 5.21 0.00 46.44 2.74
3918 4037 6.682746 ACATAGACAAACAGAGTGTCACTAG 58.317 40.000 5.21 4.44 46.44 2.57
3919 4038 6.265649 ACATAGACAAACAGAGTGTCACTAGT 59.734 38.462 5.21 5.11 46.44 2.57
3920 4039 7.447545 ACATAGACAAACAGAGTGTCACTAGTA 59.552 37.037 5.21 0.00 46.44 1.82
3921 4040 6.902771 AGACAAACAGAGTGTCACTAGTAT 57.097 37.500 5.21 0.00 46.44 2.12
3922 4041 6.682746 AGACAAACAGAGTGTCACTAGTATG 58.317 40.000 5.21 5.56 46.44 2.39
3923 4042 5.230942 ACAAACAGAGTGTCACTAGTATGC 58.769 41.667 5.21 0.00 0.00 3.14
3924 4043 4.457834 AACAGAGTGTCACTAGTATGCC 57.542 45.455 5.21 0.00 0.00 4.40
3925 4044 3.702792 ACAGAGTGTCACTAGTATGCCT 58.297 45.455 5.21 0.00 0.00 4.75
3926 4045 3.697045 ACAGAGTGTCACTAGTATGCCTC 59.303 47.826 5.21 0.00 0.00 4.70
3927 4046 3.951037 CAGAGTGTCACTAGTATGCCTCT 59.049 47.826 5.21 1.89 0.00 3.69
3928 4047 5.126779 CAGAGTGTCACTAGTATGCCTCTA 58.873 45.833 5.21 0.00 0.00 2.43
3929 4048 5.008217 CAGAGTGTCACTAGTATGCCTCTAC 59.992 48.000 5.21 0.00 0.00 2.59
3930 4049 5.104277 AGAGTGTCACTAGTATGCCTCTACT 60.104 44.000 5.21 0.00 36.04 2.57
3931 4050 5.511363 AGTGTCACTAGTATGCCTCTACTT 58.489 41.667 2.87 0.00 33.96 2.24
3932 4051 5.358442 AGTGTCACTAGTATGCCTCTACTTG 59.642 44.000 2.87 0.00 33.96 3.16
3933 4052 5.357314 GTGTCACTAGTATGCCTCTACTTGA 59.643 44.000 0.00 0.18 33.96 3.02
3934 4053 5.357314 TGTCACTAGTATGCCTCTACTTGAC 59.643 44.000 0.00 11.98 38.64 3.18
3935 4054 5.591067 GTCACTAGTATGCCTCTACTTGACT 59.409 44.000 0.00 0.00 36.95 3.41
3936 4055 6.766944 GTCACTAGTATGCCTCTACTTGACTA 59.233 42.308 0.00 0.00 36.95 2.59
3937 4056 6.993308 TCACTAGTATGCCTCTACTTGACTAG 59.007 42.308 0.00 0.00 40.35 2.57
3938 4057 5.766174 ACTAGTATGCCTCTACTTGACTAGC 59.234 44.000 0.00 0.00 38.86 3.42
3939 4058 4.798882 AGTATGCCTCTACTTGACTAGCT 58.201 43.478 0.00 0.00 0.00 3.32
3940 4059 4.825085 AGTATGCCTCTACTTGACTAGCTC 59.175 45.833 0.00 0.00 0.00 4.09
3941 4060 2.017782 TGCCTCTACTTGACTAGCTCG 58.982 52.381 0.00 0.00 0.00 5.03
3942 4061 2.018515 GCCTCTACTTGACTAGCTCGT 58.981 52.381 0.00 0.00 0.00 4.18
3943 4062 2.424246 GCCTCTACTTGACTAGCTCGTT 59.576 50.000 0.00 0.00 0.00 3.85
3944 4063 3.732471 GCCTCTACTTGACTAGCTCGTTG 60.732 52.174 0.00 0.00 0.00 4.10
3945 4064 3.690139 CCTCTACTTGACTAGCTCGTTGA 59.310 47.826 0.00 0.00 0.00 3.18
3946 4065 4.336993 CCTCTACTTGACTAGCTCGTTGAT 59.663 45.833 0.00 0.00 0.00 2.57
3947 4066 5.487153 TCTACTTGACTAGCTCGTTGATC 57.513 43.478 0.00 0.00 0.00 2.92
3948 4067 4.941873 TCTACTTGACTAGCTCGTTGATCA 59.058 41.667 0.00 0.00 0.00 2.92
3949 4068 4.521130 ACTTGACTAGCTCGTTGATCAA 57.479 40.909 3.38 3.38 0.00 2.57
3950 4069 4.883083 ACTTGACTAGCTCGTTGATCAAA 58.117 39.130 10.35 0.00 0.00 2.69
3951 4070 4.926238 ACTTGACTAGCTCGTTGATCAAAG 59.074 41.667 10.35 12.64 0.00 2.77
3952 4071 4.783764 TGACTAGCTCGTTGATCAAAGA 57.216 40.909 20.62 20.62 0.00 2.52
3953 4072 5.330455 TGACTAGCTCGTTGATCAAAGAT 57.670 39.130 21.83 12.82 0.00 2.40
3954 4073 5.105063 TGACTAGCTCGTTGATCAAAGATG 58.895 41.667 21.83 16.63 0.00 2.90
3955 4074 4.437239 ACTAGCTCGTTGATCAAAGATGG 58.563 43.478 21.83 14.18 0.00 3.51
3956 4075 3.340814 AGCTCGTTGATCAAAGATGGT 57.659 42.857 21.83 17.63 0.00 3.55
3957 4076 3.679389 AGCTCGTTGATCAAAGATGGTT 58.321 40.909 21.83 8.86 0.00 3.67
3958 4077 4.832248 AGCTCGTTGATCAAAGATGGTTA 58.168 39.130 21.83 1.90 0.00 2.85
3959 4078 5.431765 AGCTCGTTGATCAAAGATGGTTAT 58.568 37.500 21.83 4.91 0.00 1.89
3960 4079 5.295292 AGCTCGTTGATCAAAGATGGTTATG 59.705 40.000 21.83 11.16 0.00 1.90
3961 4080 5.065218 GCTCGTTGATCAAAGATGGTTATGT 59.935 40.000 21.83 0.00 0.00 2.29
3962 4081 6.403636 GCTCGTTGATCAAAGATGGTTATGTT 60.404 38.462 21.83 0.00 0.00 2.71
3963 4082 7.447374 TCGTTGATCAAAGATGGTTATGTTT 57.553 32.000 18.50 0.00 30.61 2.83
3964 4083 7.881142 TCGTTGATCAAAGATGGTTATGTTTT 58.119 30.769 18.50 0.00 28.23 2.43
3965 4084 8.020819 TCGTTGATCAAAGATGGTTATGTTTTC 58.979 33.333 18.50 0.00 28.23 2.29
3966 4085 8.023128 CGTTGATCAAAGATGGTTATGTTTTCT 58.977 33.333 15.34 0.00 28.23 2.52
3969 4088 8.677300 TGATCAAAGATGGTTATGTTTTCTAGC 58.323 33.333 0.00 0.00 28.23 3.42
3970 4089 7.391148 TCAAAGATGGTTATGTTTTCTAGCC 57.609 36.000 0.00 0.00 28.23 3.93
3971 4090 6.945435 TCAAAGATGGTTATGTTTTCTAGCCA 59.055 34.615 0.00 0.00 34.50 4.75
3972 4091 7.615365 TCAAAGATGGTTATGTTTTCTAGCCAT 59.385 33.333 0.00 0.00 41.28 4.40
3973 4092 8.902806 CAAAGATGGTTATGTTTTCTAGCCATA 58.097 33.333 0.00 0.00 39.44 2.74
3974 4093 8.682936 AAGATGGTTATGTTTTCTAGCCATAG 57.317 34.615 0.00 0.00 39.44 2.23
3975 4094 8.034313 AGATGGTTATGTTTTCTAGCCATAGA 57.966 34.615 0.00 0.00 39.44 1.98
3976 4095 7.934120 AGATGGTTATGTTTTCTAGCCATAGAC 59.066 37.037 0.00 0.00 39.44 2.59
3977 4096 6.953101 TGGTTATGTTTTCTAGCCATAGACA 58.047 36.000 0.00 0.00 37.77 3.41
3978 4097 7.573710 TGGTTATGTTTTCTAGCCATAGACAT 58.426 34.615 0.00 0.00 37.77 3.06
3979 4098 7.498900 TGGTTATGTTTTCTAGCCATAGACATG 59.501 37.037 0.00 0.00 37.77 3.21
3980 4099 7.715249 GGTTATGTTTTCTAGCCATAGACATGA 59.285 37.037 0.00 0.00 37.77 3.07
3981 4100 8.768955 GTTATGTTTTCTAGCCATAGACATGAG 58.231 37.037 0.00 0.00 37.77 2.90
3982 4101 6.299805 TGTTTTCTAGCCATAGACATGAGT 57.700 37.500 0.00 0.00 37.77 3.41
3983 4102 6.711277 TGTTTTCTAGCCATAGACATGAGTT 58.289 36.000 0.00 0.00 37.77 3.01
3984 4103 6.595326 TGTTTTCTAGCCATAGACATGAGTTG 59.405 38.462 0.00 0.00 37.77 3.16
3985 4104 5.939764 TTCTAGCCATAGACATGAGTTGT 57.060 39.130 0.00 0.00 42.79 3.32
3999 4118 6.611381 ACATGAGTTGTCATTTGATTAACGG 58.389 36.000 0.00 0.00 40.84 4.44
4000 4119 5.621197 TGAGTTGTCATTTGATTAACGGG 57.379 39.130 0.00 0.00 32.73 5.28
4001 4120 5.309638 TGAGTTGTCATTTGATTAACGGGA 58.690 37.500 0.00 0.00 32.73 5.14
4002 4121 5.943416 TGAGTTGTCATTTGATTAACGGGAT 59.057 36.000 0.00 0.00 32.73 3.85
4003 4122 6.093495 TGAGTTGTCATTTGATTAACGGGATC 59.907 38.462 0.00 0.00 32.73 3.36
4004 4123 5.943416 AGTTGTCATTTGATTAACGGGATCA 59.057 36.000 0.00 0.00 32.73 2.92
4005 4124 5.811399 TGTCATTTGATTAACGGGATCAC 57.189 39.130 0.00 0.00 33.51 3.06
4006 4125 5.249420 TGTCATTTGATTAACGGGATCACA 58.751 37.500 0.00 0.00 33.51 3.58
4007 4126 5.885352 TGTCATTTGATTAACGGGATCACAT 59.115 36.000 0.00 0.00 33.51 3.21
4008 4127 6.038161 TGTCATTTGATTAACGGGATCACATC 59.962 38.462 0.00 0.00 33.51 3.06
4009 4128 6.038161 GTCATTTGATTAACGGGATCACATCA 59.962 38.462 0.00 0.00 33.51 3.07
4010 4129 6.772233 TCATTTGATTAACGGGATCACATCAT 59.228 34.615 0.00 0.00 33.51 2.45
4011 4130 7.285172 TCATTTGATTAACGGGATCACATCATT 59.715 33.333 0.00 0.00 33.51 2.57
4012 4131 8.567104 CATTTGATTAACGGGATCACATCATTA 58.433 33.333 0.00 0.00 33.51 1.90
4013 4132 7.728847 TTGATTAACGGGATCACATCATTAG 57.271 36.000 0.00 0.00 33.51 1.73
4014 4133 6.230472 TGATTAACGGGATCACATCATTAGG 58.770 40.000 0.00 0.00 0.00 2.69
4015 4134 5.880164 TTAACGGGATCACATCATTAGGA 57.120 39.130 0.00 0.00 0.00 2.94
4016 4135 4.342862 AACGGGATCACATCATTAGGAG 57.657 45.455 0.00 0.00 0.00 3.69
4017 4136 3.576861 ACGGGATCACATCATTAGGAGA 58.423 45.455 0.00 0.00 0.00 3.71
4018 4137 3.967326 ACGGGATCACATCATTAGGAGAA 59.033 43.478 0.00 0.00 0.00 2.87
4019 4138 4.594920 ACGGGATCACATCATTAGGAGAAT 59.405 41.667 0.00 0.00 0.00 2.40
4020 4139 4.934001 CGGGATCACATCATTAGGAGAATG 59.066 45.833 0.00 0.00 0.00 2.67
4021 4140 5.279657 CGGGATCACATCATTAGGAGAATGA 60.280 44.000 0.00 2.66 40.50 2.57
4022 4141 6.575847 CGGGATCACATCATTAGGAGAATGAT 60.576 42.308 6.90 6.90 45.40 2.45
4031 4150 8.618702 ATCATTAGGAGAATGATGTGATTGAC 57.381 34.615 11.08 0.00 43.52 3.18
4032 4151 7.799081 TCATTAGGAGAATGATGTGATTGACT 58.201 34.615 0.00 0.00 32.21 3.41
4033 4152 8.270030 TCATTAGGAGAATGATGTGATTGACTT 58.730 33.333 0.00 0.00 32.21 3.01
4034 4153 7.854557 TTAGGAGAATGATGTGATTGACTTG 57.145 36.000 0.00 0.00 0.00 3.16
4035 4154 6.058553 AGGAGAATGATGTGATTGACTTGA 57.941 37.500 0.00 0.00 0.00 3.02
4036 4155 5.879223 AGGAGAATGATGTGATTGACTTGAC 59.121 40.000 0.00 0.00 0.00 3.18
4037 4156 5.879223 GGAGAATGATGTGATTGACTTGACT 59.121 40.000 0.00 0.00 0.00 3.41
4038 4157 6.036953 GGAGAATGATGTGATTGACTTGACTC 59.963 42.308 0.00 0.00 0.00 3.36
4039 4158 6.470278 AGAATGATGTGATTGACTTGACTCA 58.530 36.000 0.00 0.00 0.00 3.41
4040 4159 7.110810 AGAATGATGTGATTGACTTGACTCAT 58.889 34.615 0.00 0.00 0.00 2.90
4041 4160 7.610692 AGAATGATGTGATTGACTTGACTCATT 59.389 33.333 0.00 0.00 34.49 2.57
4042 4161 6.732531 TGATGTGATTGACTTGACTCATTC 57.267 37.500 0.00 0.00 0.00 2.67
4043 4162 5.645067 TGATGTGATTGACTTGACTCATTCC 59.355 40.000 0.00 0.00 0.00 3.01
4044 4163 3.996363 TGTGATTGACTTGACTCATTCCG 59.004 43.478 0.00 0.00 0.00 4.30
4045 4164 3.997021 GTGATTGACTTGACTCATTCCGT 59.003 43.478 0.00 0.00 0.00 4.69
4046 4165 4.452455 GTGATTGACTTGACTCATTCCGTT 59.548 41.667 0.00 0.00 0.00 4.44
4047 4166 5.637810 GTGATTGACTTGACTCATTCCGTTA 59.362 40.000 0.00 0.00 0.00 3.18
4048 4167 5.869344 TGATTGACTTGACTCATTCCGTTAG 59.131 40.000 0.00 0.00 0.00 2.34
4049 4168 3.585862 TGACTTGACTCATTCCGTTAGC 58.414 45.455 0.00 0.00 0.00 3.09
4050 4169 3.258372 TGACTTGACTCATTCCGTTAGCT 59.742 43.478 0.00 0.00 0.00 3.32
4051 4170 4.246458 GACTTGACTCATTCCGTTAGCTT 58.754 43.478 0.00 0.00 0.00 3.74
4052 4171 5.047590 TGACTTGACTCATTCCGTTAGCTTA 60.048 40.000 0.00 0.00 0.00 3.09
4053 4172 5.411781 ACTTGACTCATTCCGTTAGCTTAG 58.588 41.667 0.00 0.00 0.00 2.18
4054 4173 3.782046 TGACTCATTCCGTTAGCTTAGC 58.218 45.455 0.00 0.00 0.00 3.09
4055 4174 3.194755 TGACTCATTCCGTTAGCTTAGCA 59.805 43.478 7.07 0.00 0.00 3.49
4056 4175 3.522553 ACTCATTCCGTTAGCTTAGCAC 58.477 45.455 7.07 0.00 0.00 4.40
4057 4176 3.195825 ACTCATTCCGTTAGCTTAGCACT 59.804 43.478 7.07 0.00 0.00 4.40
4058 4177 3.782046 TCATTCCGTTAGCTTAGCACTC 58.218 45.455 7.07 0.00 0.00 3.51
4059 4178 2.273370 TTCCGTTAGCTTAGCACTCG 57.727 50.000 7.07 7.42 0.00 4.18
4060 4179 1.456296 TCCGTTAGCTTAGCACTCGA 58.544 50.000 7.07 0.00 0.00 4.04
4061 4180 2.022195 TCCGTTAGCTTAGCACTCGAT 58.978 47.619 7.07 0.00 0.00 3.59
4062 4181 2.033049 TCCGTTAGCTTAGCACTCGATC 59.967 50.000 7.07 0.00 0.00 3.69
4063 4182 2.037649 CGTTAGCTTAGCACTCGATCG 58.962 52.381 9.36 9.36 0.00 3.69
4064 4183 2.539142 CGTTAGCTTAGCACTCGATCGT 60.539 50.000 15.94 0.00 0.00 3.73
4065 4184 3.436496 GTTAGCTTAGCACTCGATCGTT 58.564 45.455 15.94 0.04 0.00 3.85
4066 4185 2.656560 AGCTTAGCACTCGATCGTTT 57.343 45.000 15.94 0.00 0.00 3.60
4067 4186 3.777465 AGCTTAGCACTCGATCGTTTA 57.223 42.857 15.94 0.00 0.00 2.01
4068 4187 3.696898 AGCTTAGCACTCGATCGTTTAG 58.303 45.455 15.94 7.91 0.00 1.85
4069 4188 3.128938 AGCTTAGCACTCGATCGTTTAGT 59.871 43.478 15.94 8.62 0.00 2.24
4070 4189 4.334759 AGCTTAGCACTCGATCGTTTAGTA 59.665 41.667 15.94 0.27 0.00 1.82
4071 4190 5.008811 AGCTTAGCACTCGATCGTTTAGTAT 59.991 40.000 15.94 6.33 0.00 2.12
4072 4191 5.115773 GCTTAGCACTCGATCGTTTAGTATG 59.884 44.000 15.94 2.12 0.00 2.39
4073 4192 4.634184 AGCACTCGATCGTTTAGTATGT 57.366 40.909 15.94 0.00 0.00 2.29
4074 4193 4.995124 AGCACTCGATCGTTTAGTATGTT 58.005 39.130 15.94 0.00 0.00 2.71
4075 4194 4.798907 AGCACTCGATCGTTTAGTATGTTG 59.201 41.667 15.94 0.73 0.00 3.33
4076 4195 4.548346 GCACTCGATCGTTTAGTATGTTGC 60.548 45.833 15.94 6.99 0.00 4.17
4077 4196 4.798907 CACTCGATCGTTTAGTATGTTGCT 59.201 41.667 15.94 0.00 0.00 3.91
4078 4197 5.969435 CACTCGATCGTTTAGTATGTTGCTA 59.031 40.000 15.94 0.00 0.00 3.49
4079 4198 6.637254 CACTCGATCGTTTAGTATGTTGCTAT 59.363 38.462 15.94 0.00 0.00 2.97
4080 4199 7.167635 CACTCGATCGTTTAGTATGTTGCTATT 59.832 37.037 15.94 0.00 0.00 1.73
4081 4200 7.167635 ACTCGATCGTTTAGTATGTTGCTATTG 59.832 37.037 15.94 0.00 0.00 1.90
4082 4201 6.065153 CGATCGTTTAGTATGTTGCTATTGC 58.935 40.000 7.03 0.00 40.20 3.56
4083 4202 6.074302 CGATCGTTTAGTATGTTGCTATTGCT 60.074 38.462 7.03 0.00 40.48 3.91
4084 4203 6.978343 TCGTTTAGTATGTTGCTATTGCTT 57.022 33.333 0.00 0.00 40.48 3.91
4085 4204 7.372451 TCGTTTAGTATGTTGCTATTGCTTT 57.628 32.000 0.00 0.00 40.48 3.51
4086 4205 7.461107 TCGTTTAGTATGTTGCTATTGCTTTC 58.539 34.615 0.00 0.00 40.48 2.62
4087 4206 7.333423 TCGTTTAGTATGTTGCTATTGCTTTCT 59.667 33.333 0.00 0.00 40.48 2.52
4088 4207 7.962918 CGTTTAGTATGTTGCTATTGCTTTCTT 59.037 33.333 0.00 0.00 40.48 2.52
4089 4208 9.278734 GTTTAGTATGTTGCTATTGCTTTCTTC 57.721 33.333 0.00 0.00 40.48 2.87
4090 4209 8.560355 TTAGTATGTTGCTATTGCTTTCTTCA 57.440 30.769 0.00 0.00 40.48 3.02
4091 4210 7.636150 AGTATGTTGCTATTGCTTTCTTCAT 57.364 32.000 0.00 0.17 40.48 2.57
4092 4211 7.478322 AGTATGTTGCTATTGCTTTCTTCATG 58.522 34.615 0.00 0.00 40.48 3.07
4093 4212 5.963176 TGTTGCTATTGCTTTCTTCATGA 57.037 34.783 0.00 0.00 40.48 3.07
4094 4213 5.702865 TGTTGCTATTGCTTTCTTCATGAC 58.297 37.500 0.00 0.00 40.48 3.06
4095 4214 5.474532 TGTTGCTATTGCTTTCTTCATGACT 59.525 36.000 0.00 0.00 40.48 3.41
4096 4215 6.016024 TGTTGCTATTGCTTTCTTCATGACTT 60.016 34.615 0.00 0.00 40.48 3.01
4097 4216 7.174772 TGTTGCTATTGCTTTCTTCATGACTTA 59.825 33.333 0.00 0.00 40.48 2.24
4098 4217 7.870509 TGCTATTGCTTTCTTCATGACTTAT 57.129 32.000 0.00 0.00 40.48 1.73
4099 4218 8.962884 TGCTATTGCTTTCTTCATGACTTATA 57.037 30.769 0.00 0.00 40.48 0.98
4100 4219 8.830580 TGCTATTGCTTTCTTCATGACTTATAC 58.169 33.333 0.00 0.00 40.48 1.47
4101 4220 8.830580 GCTATTGCTTTCTTCATGACTTATACA 58.169 33.333 0.00 0.00 36.03 2.29
4104 4223 8.565896 TTGCTTTCTTCATGACTTATACATGT 57.434 30.769 2.69 2.69 43.56 3.21
4105 4224 8.565896 TGCTTTCTTCATGACTTATACATGTT 57.434 30.769 2.30 0.00 43.56 2.71
4106 4225 8.668353 TGCTTTCTTCATGACTTATACATGTTC 58.332 33.333 2.30 0.00 43.56 3.18
4107 4226 8.125448 GCTTTCTTCATGACTTATACATGTTCC 58.875 37.037 2.30 0.00 43.56 3.62
4108 4227 9.388506 CTTTCTTCATGACTTATACATGTTCCT 57.611 33.333 2.30 0.00 43.56 3.36
4111 4230 9.987272 TCTTCATGACTTATACATGTTCCTATG 57.013 33.333 2.30 1.10 43.56 2.23
4112 4231 9.987272 CTTCATGACTTATACATGTTCCTATGA 57.013 33.333 2.30 3.47 43.56 2.15
4113 4232 9.764363 TTCATGACTTATACATGTTCCTATGAC 57.236 33.333 2.30 0.00 43.56 3.06
4114 4233 9.147732 TCATGACTTATACATGTTCCTATGACT 57.852 33.333 2.30 0.00 43.56 3.41
4126 4245 9.096160 CATGTTCCTATGACTATGAGATTATGC 57.904 37.037 0.00 0.00 0.00 3.14
4127 4246 8.193953 TGTTCCTATGACTATGAGATTATGCA 57.806 34.615 0.00 0.00 0.00 3.96
4128 4247 8.650490 TGTTCCTATGACTATGAGATTATGCAA 58.350 33.333 0.00 0.00 0.00 4.08
4129 4248 8.930760 GTTCCTATGACTATGAGATTATGCAAC 58.069 37.037 0.00 0.00 0.00 4.17
4130 4249 8.427902 TCCTATGACTATGAGATTATGCAACT 57.572 34.615 0.00 0.00 0.00 3.16
4131 4250 8.526978 TCCTATGACTATGAGATTATGCAACTC 58.473 37.037 0.00 0.00 0.00 3.01
4132 4251 7.763528 CCTATGACTATGAGATTATGCAACTCC 59.236 40.741 0.00 0.00 0.00 3.85
4133 4252 5.858381 TGACTATGAGATTATGCAACTCCC 58.142 41.667 0.00 0.00 0.00 4.30
4134 4253 4.887748 ACTATGAGATTATGCAACTCCCG 58.112 43.478 0.00 0.00 0.00 5.14
4135 4254 3.845781 ATGAGATTATGCAACTCCCGT 57.154 42.857 0.00 0.00 0.00 5.28
4136 4255 3.627395 TGAGATTATGCAACTCCCGTT 57.373 42.857 0.00 0.00 0.00 4.44
4137 4256 3.950397 TGAGATTATGCAACTCCCGTTT 58.050 40.909 0.00 0.00 0.00 3.60
4138 4257 5.092554 TGAGATTATGCAACTCCCGTTTA 57.907 39.130 0.00 0.00 0.00 2.01
4139 4258 4.873827 TGAGATTATGCAACTCCCGTTTAC 59.126 41.667 0.00 0.00 0.00 2.01
4140 4259 4.196971 AGATTATGCAACTCCCGTTTACC 58.803 43.478 0.00 0.00 0.00 2.85
4141 4260 2.012937 TATGCAACTCCCGTTTACCG 57.987 50.000 0.00 0.00 0.00 4.02
4159 4278 0.307760 CGGAGGAACACTTTGTGTGC 59.692 55.000 4.01 2.15 46.79 4.57
4160 4279 1.680338 GGAGGAACACTTTGTGTGCT 58.320 50.000 8.51 2.39 46.79 4.40
4161 4280 2.805295 CGGAGGAACACTTTGTGTGCTA 60.805 50.000 8.51 0.00 46.79 3.49
4162 4281 2.548480 GGAGGAACACTTTGTGTGCTAC 59.452 50.000 8.51 3.85 46.79 3.58
4163 4282 2.548480 GAGGAACACTTTGTGTGCTACC 59.452 50.000 8.51 8.09 46.79 3.18
4164 4283 2.092646 AGGAACACTTTGTGTGCTACCA 60.093 45.455 8.51 0.00 46.79 3.25
4165 4284 2.685897 GGAACACTTTGTGTGCTACCAA 59.314 45.455 8.51 0.00 46.79 3.67
4166 4285 3.129638 GGAACACTTTGTGTGCTACCAAA 59.870 43.478 8.51 0.00 46.79 3.28
4167 4286 4.102649 GAACACTTTGTGTGCTACCAAAC 58.897 43.478 4.01 0.00 46.79 2.93
4168 4287 2.715268 CACTTTGTGTGCTACCAAACG 58.285 47.619 0.00 0.00 40.06 3.60
4169 4288 2.096819 CACTTTGTGTGCTACCAAACGT 59.903 45.455 0.00 0.00 40.06 3.99
4170 4289 2.353579 ACTTTGTGTGCTACCAAACGTC 59.646 45.455 0.00 0.00 31.47 4.34
4171 4290 2.025589 TTGTGTGCTACCAAACGTCA 57.974 45.000 0.00 0.00 31.47 4.35
4172 4291 1.292061 TGTGTGCTACCAAACGTCAC 58.708 50.000 0.00 0.00 31.47 3.67
4173 4292 1.292061 GTGTGCTACCAAACGTCACA 58.708 50.000 0.34 0.34 35.57 3.58
4174 4293 1.666700 GTGTGCTACCAAACGTCACAA 59.333 47.619 5.66 0.00 39.07 3.33
4175 4294 1.666700 TGTGCTACCAAACGTCACAAC 59.333 47.619 1.90 0.00 35.08 3.32
4185 4304 3.277652 CGTCACAACGTAACTGGGT 57.722 52.632 0.00 0.00 43.94 4.51
4186 4305 0.856641 CGTCACAACGTAACTGGGTG 59.143 55.000 0.00 0.00 43.94 4.61
4187 4306 1.536496 CGTCACAACGTAACTGGGTGA 60.536 52.381 0.00 0.00 43.94 4.02
4188 4307 2.762745 GTCACAACGTAACTGGGTGAT 58.237 47.619 0.00 0.00 40.23 3.06
4189 4308 3.135994 GTCACAACGTAACTGGGTGATT 58.864 45.455 0.00 0.00 40.23 2.57
4190 4309 4.309099 GTCACAACGTAACTGGGTGATTA 58.691 43.478 0.00 0.00 40.23 1.75
4191 4310 4.933400 GTCACAACGTAACTGGGTGATTAT 59.067 41.667 0.00 0.00 40.23 1.28
4192 4311 6.101332 GTCACAACGTAACTGGGTGATTATA 58.899 40.000 0.00 0.00 40.23 0.98
4193 4312 6.591062 GTCACAACGTAACTGGGTGATTATAA 59.409 38.462 0.00 0.00 40.23 0.98
4194 4313 7.118101 GTCACAACGTAACTGGGTGATTATAAA 59.882 37.037 0.00 0.00 40.23 1.40
4195 4314 7.332430 TCACAACGTAACTGGGTGATTATAAAG 59.668 37.037 0.00 0.00 33.88 1.85
4196 4315 6.596497 ACAACGTAACTGGGTGATTATAAAGG 59.404 38.462 0.00 0.00 0.00 3.11
4197 4316 6.303903 ACGTAACTGGGTGATTATAAAGGT 57.696 37.500 0.00 0.00 0.00 3.50
4198 4317 6.110707 ACGTAACTGGGTGATTATAAAGGTG 58.889 40.000 0.00 0.00 0.00 4.00
4199 4318 5.007332 CGTAACTGGGTGATTATAAAGGTGC 59.993 44.000 0.00 0.00 0.00 5.01
4200 4319 4.862641 ACTGGGTGATTATAAAGGTGCT 57.137 40.909 0.00 0.00 0.00 4.40
4201 4320 4.781934 ACTGGGTGATTATAAAGGTGCTC 58.218 43.478 0.00 0.00 0.00 4.26
4202 4321 4.475016 ACTGGGTGATTATAAAGGTGCTCT 59.525 41.667 0.00 0.00 0.00 4.09
4203 4322 5.665812 ACTGGGTGATTATAAAGGTGCTCTA 59.334 40.000 0.00 0.00 0.00 2.43
4204 4323 5.925509 TGGGTGATTATAAAGGTGCTCTAC 58.074 41.667 0.00 0.00 0.00 2.59
4205 4324 5.427157 TGGGTGATTATAAAGGTGCTCTACA 59.573 40.000 0.00 0.00 0.00 2.74
4206 4325 5.992217 GGGTGATTATAAAGGTGCTCTACAG 59.008 44.000 0.00 0.00 0.00 2.74
4207 4326 5.992217 GGTGATTATAAAGGTGCTCTACAGG 59.008 44.000 0.00 0.00 0.00 4.00
4208 4327 6.408206 GGTGATTATAAAGGTGCTCTACAGGT 60.408 42.308 0.00 0.00 0.00 4.00
4209 4328 6.480320 GTGATTATAAAGGTGCTCTACAGGTG 59.520 42.308 0.00 0.00 0.00 4.00
4210 4329 6.156256 TGATTATAAAGGTGCTCTACAGGTGT 59.844 38.462 0.00 0.00 0.00 4.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 1.075374 TGCTAACTGGCCAGGTCAAAT 59.925 47.619 35.42 11.84 0.00 2.32
42 43 1.421410 GCATGGTCCTTGCTCGTACG 61.421 60.000 19.91 9.53 37.14 3.67
44 45 1.220749 GGCATGGTCCTTGCTCGTA 59.779 57.895 24.56 0.00 40.03 3.43
45 46 2.045926 GGCATGGTCCTTGCTCGT 60.046 61.111 24.56 0.00 40.03 4.18
46 47 3.197790 CGGCATGGTCCTTGCTCG 61.198 66.667 24.56 21.48 40.03 5.03
87 88 1.143813 AGCATAGTAGCAGGGCCATT 58.856 50.000 6.18 0.00 36.85 3.16
112 113 2.111878 GCCGCCACTGGATAGCAT 59.888 61.111 0.00 0.00 0.00 3.79
137 138 4.489771 CATCGTCCCTGCACCCCC 62.490 72.222 0.00 0.00 0.00 5.40
142 143 2.060383 CCCTCTCATCGTCCCTGCA 61.060 63.158 0.00 0.00 0.00 4.41
153 154 2.676822 AGAAGCGTCGCCCTCTCA 60.677 61.111 14.86 0.00 0.00 3.27
202 203 0.811616 GTGCTATTCCAGTCCAGCGG 60.812 60.000 0.00 0.00 36.81 5.52
276 283 2.490148 TATGCTGAGGTCGAGGCCG 61.490 63.158 0.00 0.00 37.07 6.13
294 301 0.692476 TGGAGGCAATACTGTGCAGT 59.308 50.000 9.90 9.90 46.81 4.40
317 324 0.036294 GGTGGTGTTGAGTAGGCCTC 60.036 60.000 9.68 0.21 40.89 4.70
421 428 4.478203 TGGATGAATCTAGAGAGTCTGGG 58.522 47.826 0.00 0.00 39.62 4.45
441 448 5.799681 AATTTGTTTGAAAACTGCACTGG 57.200 34.783 7.39 0.00 39.59 4.00
442 449 6.847289 GCATAATTTGTTTGAAAACTGCACTG 59.153 34.615 7.39 0.85 39.59 3.66
445 452 6.538021 ACAGCATAATTTGTTTGAAAACTGCA 59.462 30.769 14.24 0.00 39.59 4.41
448 455 8.947055 AGAACAGCATAATTTGTTTGAAAACT 57.053 26.923 7.39 0.00 37.63 2.66
459 466 2.722094 TGCCGGAGAACAGCATAATTT 58.278 42.857 5.05 0.00 0.00 1.82
476 483 4.335400 TGAGGAAAAAGGAACATTTGCC 57.665 40.909 0.00 0.00 44.60 4.52
584 593 4.941873 GGGACGTCACTCTCCATTAATTTT 59.058 41.667 18.91 0.00 0.00 1.82
614 623 2.538449 CCGTAGCGATAAAATTGCGACT 59.462 45.455 9.68 0.00 44.54 4.18
694 703 7.444703 AATACTCCTCAGGCTAAGAGAAATT 57.555 36.000 12.88 9.42 35.09 1.82
696 705 6.875972 AAATACTCCTCAGGCTAAGAGAAA 57.124 37.500 12.88 3.41 35.09 2.52
705 714 7.021790 CGAAAAAGTTTAAATACTCCTCAGGC 58.978 38.462 0.00 0.00 0.00 4.85
768 855 1.547372 AGCATGCCAAACCATGAGAAC 59.453 47.619 15.66 0.00 44.12 3.01
781 868 4.963276 TCTGTACAATAAACAGCATGCC 57.037 40.909 15.66 0.00 43.30 4.40
782 869 5.796935 CAGTTCTGTACAATAAACAGCATGC 59.203 40.000 10.51 10.51 43.30 4.06
897 984 7.761409 ACACATACGATGCATCATTTACTTTT 58.239 30.769 25.70 0.00 0.00 2.27
898 985 7.320443 ACACATACGATGCATCATTTACTTT 57.680 32.000 25.70 1.26 0.00 2.66
1056 1143 4.794278 AGTCAGATTTTGCATGCATGAA 57.206 36.364 30.64 18.49 0.00 2.57
1120 1207 6.884836 GCAAAGATAAGAGAGGGGAACTTTAA 59.115 38.462 0.00 0.00 0.00 1.52
1157 1244 3.869065 ACGAGTGAAAGTTTCTCCAACA 58.131 40.909 16.33 0.00 37.93 3.33
1260 1353 2.839975 TGCACATGAAAGTCGTTACCA 58.160 42.857 0.00 0.00 0.00 3.25
1267 1360 4.818534 TCTCAGTTTGCACATGAAAGTC 57.181 40.909 0.00 0.00 0.00 3.01
1387 1480 6.932356 ATCGACCGACTCTAGTTTATGTTA 57.068 37.500 0.00 0.00 0.00 2.41
1505 1598 1.081174 TGGATGGAGGAAGAGGACCTT 59.919 52.381 0.00 0.00 37.93 3.50
1517 1610 3.244561 ACTGGTGTGTACTTTGGATGGAG 60.245 47.826 0.00 0.00 0.00 3.86
1889 1982 7.776933 TCAAATGTCATAAGTATCAGACTGC 57.223 36.000 0.00 0.00 38.87 4.40
2039 2132 5.723295 ACACATCAAGAAACACAAGCTTTT 58.277 33.333 0.00 0.00 0.00 2.27
2358 2451 0.183731 GGCATAAAGGTAGCTGCCCT 59.816 55.000 18.24 9.17 46.76 5.19
2377 2470 4.692625 GTCATCGGATCCCATAATGTTCAG 59.307 45.833 6.06 0.00 0.00 3.02
2442 2535 4.365723 GCAGCCCAATGACATTGAATAAG 58.634 43.478 26.36 13.99 42.83 1.73
2466 2559 5.440207 TGGTCATGAATTCCTCTTGATCA 57.560 39.130 2.27 5.03 43.52 2.92
2505 2598 6.442564 TGTAGTTGAGTATGTTTCCCCTGTAT 59.557 38.462 0.00 0.00 0.00 2.29
2775 2871 0.178926 TTCCCGGTGTAGGACCAGAA 60.179 55.000 0.00 0.00 46.55 3.02
2821 2917 0.034756 TTGCCTTCGTAGCTGCTCAA 59.965 50.000 4.91 0.00 0.00 3.02
2822 2918 0.250234 ATTGCCTTCGTAGCTGCTCA 59.750 50.000 4.91 0.00 0.00 4.26
2886 2991 1.590259 GAGCTCAGGAATCGACGGC 60.590 63.158 9.40 0.00 0.00 5.68
2920 3025 8.859236 ATGATATGACCAACTTTATCATCCTG 57.141 34.615 0.00 0.00 34.86 3.86
2922 3027 9.950496 AGTATGATATGACCAACTTTATCATCC 57.050 33.333 7.37 0.00 36.45 3.51
2938 3046 6.486248 CCGAACAACCAAACAGTATGATATG 58.514 40.000 0.00 0.00 39.69 1.78
3028 3136 2.287547 CCACAACAGAAAACCATGACCG 60.288 50.000 0.00 0.00 0.00 4.79
3181 3289 3.003689 AGTTCTGCAACCGTTGAATTGAG 59.996 43.478 15.63 2.61 32.22 3.02
3186 3294 5.508200 AAATAAGTTCTGCAACCGTTGAA 57.492 34.783 15.63 3.29 32.22 2.69
3283 3399 3.949842 TCACATCTTGAGAGTCCACTG 57.050 47.619 0.00 0.00 0.00 3.66
3285 3401 3.993081 CACTTCACATCTTGAGAGTCCAC 59.007 47.826 0.00 0.00 34.94 4.02
3347 3466 2.827921 AGATTTGGAAAAGCATCGCCTT 59.172 40.909 0.00 0.00 0.00 4.35
3348 3467 2.450476 AGATTTGGAAAAGCATCGCCT 58.550 42.857 0.00 0.00 0.00 5.52
3349 3468 2.925563 CAAGATTTGGAAAAGCATCGCC 59.074 45.455 0.00 0.00 0.00 5.54
3410 3529 3.891977 CTCCTATGCCTACTAGTTGCAGA 59.108 47.826 20.20 16.24 38.58 4.26
3419 3538 2.565645 CGCCGCTCCTATGCCTACT 61.566 63.158 0.00 0.00 0.00 2.57
3451 3570 1.450531 GCATGCATAGGCTCCACCAC 61.451 60.000 14.21 0.00 43.14 4.16
3463 3582 4.439305 AAAACAACGTAGATGCATGCAT 57.561 36.364 32.66 32.66 39.69 3.96
3513 3632 1.603739 GCTGGACCTCAAACCCACC 60.604 63.158 0.00 0.00 0.00 4.61
3545 3664 8.873830 CGTACAATGATCAAAGAGTACAAAGAT 58.126 33.333 20.44 0.00 33.35 2.40
3586 3705 7.730364 TTGAGGATGTTTCTTACTCTGTTTC 57.270 36.000 0.00 0.00 0.00 2.78
3587 3706 8.697507 AATTGAGGATGTTTCTTACTCTGTTT 57.302 30.769 0.00 0.00 0.00 2.83
3644 3763 7.773690 TGCTTCTGTTCTTAGGTTCTTAAAACT 59.226 33.333 0.00 0.00 36.14 2.66
3704 3823 8.844865 TGCATGATTACATACCTCCTATATCT 57.155 34.615 0.00 0.00 35.09 1.98
3708 3827 9.017509 CAAAATGCATGATTACATACCTCCTAT 57.982 33.333 0.00 0.00 35.09 2.57
3769 3888 3.471680 GGCATATTTCCTCCAGAGACAC 58.528 50.000 0.00 0.00 0.00 3.67
3777 3896 3.990959 CCTCTAGGGCATATTTCCTCC 57.009 52.381 0.00 0.00 34.75 4.30
3788 3907 8.319146 TAATAACTGTATTATTGCCTCTAGGGC 58.681 37.037 13.60 13.60 44.11 5.19
3846 3965 8.935844 CCGCTTAATACAATTCTAGCATGAATA 58.064 33.333 0.00 0.00 35.82 1.75
3847 3966 7.661437 TCCGCTTAATACAATTCTAGCATGAAT 59.339 33.333 0.00 0.00 38.19 2.57
3848 3967 6.989759 TCCGCTTAATACAATTCTAGCATGAA 59.010 34.615 0.00 0.00 0.00 2.57
3849 3968 6.521162 TCCGCTTAATACAATTCTAGCATGA 58.479 36.000 0.00 0.00 0.00 3.07
3850 3969 6.785488 TCCGCTTAATACAATTCTAGCATG 57.215 37.500 0.00 0.00 0.00 4.06
3851 3970 7.282224 TGTTTCCGCTTAATACAATTCTAGCAT 59.718 33.333 0.00 0.00 0.00 3.79
3852 3971 6.596106 TGTTTCCGCTTAATACAATTCTAGCA 59.404 34.615 0.00 0.00 0.00 3.49
3853 3972 7.011828 TGTTTCCGCTTAATACAATTCTAGC 57.988 36.000 0.00 0.00 0.00 3.42
3861 3980 9.332502 ACATGTATTATGTTTCCGCTTAATACA 57.667 29.630 18.19 18.19 45.34 2.29
3862 3981 9.594038 CACATGTATTATGTTTCCGCTTAATAC 57.406 33.333 0.00 11.57 39.63 1.89
3863 3982 9.332502 ACACATGTATTATGTTTCCGCTTAATA 57.667 29.630 0.00 0.00 0.00 0.98
3864 3983 8.128582 CACACATGTATTATGTTTCCGCTTAAT 58.871 33.333 0.00 0.00 0.00 1.40
3865 3984 7.334671 TCACACATGTATTATGTTTCCGCTTAA 59.665 33.333 0.00 0.00 0.00 1.85
3866 3985 6.819146 TCACACATGTATTATGTTTCCGCTTA 59.181 34.615 0.00 0.00 0.00 3.09
3867 3986 5.645929 TCACACATGTATTATGTTTCCGCTT 59.354 36.000 0.00 0.00 0.00 4.68
3868 3987 5.182487 TCACACATGTATTATGTTTCCGCT 58.818 37.500 0.00 0.00 0.00 5.52
3869 3988 5.478233 TCACACATGTATTATGTTTCCGC 57.522 39.130 0.00 0.00 0.00 5.54
3870 3989 8.608317 TGTATTCACACATGTATTATGTTTCCG 58.392 33.333 0.00 0.00 0.00 4.30
3880 3999 9.665719 TGTTTGTCTATGTATTCACACATGTAT 57.334 29.630 0.00 0.00 39.46 2.29
3881 4000 9.150348 CTGTTTGTCTATGTATTCACACATGTA 57.850 33.333 0.00 0.00 39.46 2.29
3882 4001 7.877612 TCTGTTTGTCTATGTATTCACACATGT 59.122 33.333 0.00 0.00 39.46 3.21
3883 4002 8.255394 TCTGTTTGTCTATGTATTCACACATG 57.745 34.615 0.00 0.00 39.46 3.21
3884 4003 8.097038 ACTCTGTTTGTCTATGTATTCACACAT 58.903 33.333 0.00 0.00 41.88 3.21
3885 4004 7.384932 CACTCTGTTTGTCTATGTATTCACACA 59.615 37.037 0.00 0.00 37.54 3.72
3886 4005 7.385205 ACACTCTGTTTGTCTATGTATTCACAC 59.615 37.037 0.00 0.00 37.54 3.82
3887 4006 7.441836 ACACTCTGTTTGTCTATGTATTCACA 58.558 34.615 0.00 0.00 39.52 3.58
3888 4007 7.598869 TGACACTCTGTTTGTCTATGTATTCAC 59.401 37.037 11.01 0.00 43.30 3.18
3889 4008 7.598869 GTGACACTCTGTTTGTCTATGTATTCA 59.401 37.037 0.00 0.00 43.30 2.57
3890 4009 7.815068 AGTGACACTCTGTTTGTCTATGTATTC 59.185 37.037 1.07 0.00 43.30 1.75
3891 4010 7.671302 AGTGACACTCTGTTTGTCTATGTATT 58.329 34.615 1.07 0.00 43.30 1.89
3892 4011 7.233389 AGTGACACTCTGTTTGTCTATGTAT 57.767 36.000 1.07 0.00 43.30 2.29
3893 4012 6.650427 AGTGACACTCTGTTTGTCTATGTA 57.350 37.500 1.07 0.00 43.30 2.29
3894 4013 5.537300 AGTGACACTCTGTTTGTCTATGT 57.463 39.130 1.07 0.00 43.30 2.29
3895 4014 6.682746 ACTAGTGACACTCTGTTTGTCTATG 58.317 40.000 12.39 0.00 43.30 2.23
3896 4015 6.902771 ACTAGTGACACTCTGTTTGTCTAT 57.097 37.500 12.39 0.00 43.30 1.98
3897 4016 7.575155 GCATACTAGTGACACTCTGTTTGTCTA 60.575 40.741 12.39 0.00 43.30 2.59
3898 4017 6.682746 CATACTAGTGACACTCTGTTTGTCT 58.317 40.000 12.39 0.00 43.30 3.41
3899 4018 5.346281 GCATACTAGTGACACTCTGTTTGTC 59.654 44.000 12.39 9.81 43.22 3.18
3900 4019 5.230942 GCATACTAGTGACACTCTGTTTGT 58.769 41.667 12.39 5.61 0.00 2.83
3901 4020 4.627467 GGCATACTAGTGACACTCTGTTTG 59.373 45.833 12.39 16.63 0.00 2.93
3902 4021 4.528596 AGGCATACTAGTGACACTCTGTTT 59.471 41.667 12.39 5.23 0.00 2.83
3903 4022 4.090090 AGGCATACTAGTGACACTCTGTT 58.910 43.478 12.39 0.00 0.00 3.16
3904 4023 3.697045 GAGGCATACTAGTGACACTCTGT 59.303 47.826 12.39 14.35 0.00 3.41
3905 4024 3.951037 AGAGGCATACTAGTGACACTCTG 59.049 47.826 12.39 9.04 33.23 3.35
3906 4025 4.243793 AGAGGCATACTAGTGACACTCT 57.756 45.455 12.39 10.40 0.00 3.24
3907 4026 5.127491 AGTAGAGGCATACTAGTGACACTC 58.873 45.833 12.39 8.31 34.21 3.51
3908 4027 5.118729 AGTAGAGGCATACTAGTGACACT 57.881 43.478 13.68 13.68 34.21 3.55
3909 4028 5.357314 TCAAGTAGAGGCATACTAGTGACAC 59.643 44.000 5.39 0.00 34.90 3.67
3910 4029 5.357314 GTCAAGTAGAGGCATACTAGTGACA 59.643 44.000 19.41 0.00 40.28 3.58
3911 4030 5.591067 AGTCAAGTAGAGGCATACTAGTGAC 59.409 44.000 17.97 17.97 40.57 3.67
3912 4031 5.756918 AGTCAAGTAGAGGCATACTAGTGA 58.243 41.667 5.39 2.59 34.90 3.41
3913 4032 6.293735 GCTAGTCAAGTAGAGGCATACTAGTG 60.294 46.154 5.39 0.00 38.02 2.74
3914 4033 5.766174 GCTAGTCAAGTAGAGGCATACTAGT 59.234 44.000 0.00 0.00 38.02 2.57
3915 4034 6.001460 AGCTAGTCAAGTAGAGGCATACTAG 58.999 44.000 0.00 0.00 38.50 2.57
3916 4035 5.942961 AGCTAGTCAAGTAGAGGCATACTA 58.057 41.667 3.23 0.00 34.90 1.82
3917 4036 4.798882 AGCTAGTCAAGTAGAGGCATACT 58.201 43.478 0.00 0.00 37.61 2.12
3918 4037 4.319911 CGAGCTAGTCAAGTAGAGGCATAC 60.320 50.000 0.00 0.00 0.00 2.39
3919 4038 3.815962 CGAGCTAGTCAAGTAGAGGCATA 59.184 47.826 0.00 0.00 0.00 3.14
3920 4039 2.621055 CGAGCTAGTCAAGTAGAGGCAT 59.379 50.000 0.00 0.00 0.00 4.40
3921 4040 2.017782 CGAGCTAGTCAAGTAGAGGCA 58.982 52.381 0.00 0.00 0.00 4.75
3922 4041 2.018515 ACGAGCTAGTCAAGTAGAGGC 58.981 52.381 0.00 0.00 0.00 4.70
3923 4042 3.690139 TCAACGAGCTAGTCAAGTAGAGG 59.310 47.826 0.00 0.00 0.00 3.69
3924 4043 4.948608 TCAACGAGCTAGTCAAGTAGAG 57.051 45.455 0.00 0.00 0.00 2.43
3925 4044 4.941873 TGATCAACGAGCTAGTCAAGTAGA 59.058 41.667 0.00 0.00 0.00 2.59
3926 4045 5.236655 TGATCAACGAGCTAGTCAAGTAG 57.763 43.478 0.00 0.00 0.00 2.57
3927 4046 5.638596 TTGATCAACGAGCTAGTCAAGTA 57.361 39.130 3.38 0.00 0.00 2.24
3928 4047 4.521130 TTGATCAACGAGCTAGTCAAGT 57.479 40.909 3.38 0.00 0.00 3.16
3929 4048 5.164233 TCTTTGATCAACGAGCTAGTCAAG 58.836 41.667 7.89 0.00 0.00 3.02
3930 4049 5.134202 TCTTTGATCAACGAGCTAGTCAA 57.866 39.130 7.89 0.00 0.00 3.18
3931 4050 4.783764 TCTTTGATCAACGAGCTAGTCA 57.216 40.909 7.89 0.00 0.00 3.41
3932 4051 4.505922 CCATCTTTGATCAACGAGCTAGTC 59.494 45.833 18.24 0.00 0.00 2.59
3933 4052 4.081420 ACCATCTTTGATCAACGAGCTAGT 60.081 41.667 18.24 10.56 0.00 2.57
3934 4053 4.437239 ACCATCTTTGATCAACGAGCTAG 58.563 43.478 18.24 8.24 0.00 3.42
3935 4054 4.471904 ACCATCTTTGATCAACGAGCTA 57.528 40.909 18.24 0.00 0.00 3.32
3936 4055 3.340814 ACCATCTTTGATCAACGAGCT 57.659 42.857 18.24 2.03 0.00 4.09
3937 4056 5.065218 ACATAACCATCTTTGATCAACGAGC 59.935 40.000 18.24 0.00 0.00 5.03
3938 4057 6.668541 ACATAACCATCTTTGATCAACGAG 57.331 37.500 18.24 10.23 0.00 4.18
3939 4058 7.447374 AAACATAACCATCTTTGATCAACGA 57.553 32.000 16.08 16.08 0.00 3.85
3940 4059 8.023128 AGAAAACATAACCATCTTTGATCAACG 58.977 33.333 7.89 6.62 0.00 4.10
3943 4062 8.677300 GCTAGAAAACATAACCATCTTTGATCA 58.323 33.333 0.00 0.00 0.00 2.92
3944 4063 8.131731 GGCTAGAAAACATAACCATCTTTGATC 58.868 37.037 0.00 0.00 0.00 2.92
3945 4064 7.615365 TGGCTAGAAAACATAACCATCTTTGAT 59.385 33.333 0.00 0.00 0.00 2.57
3946 4065 6.945435 TGGCTAGAAAACATAACCATCTTTGA 59.055 34.615 0.00 0.00 0.00 2.69
3947 4066 7.156876 TGGCTAGAAAACATAACCATCTTTG 57.843 36.000 0.00 0.00 0.00 2.77
3948 4067 7.961326 ATGGCTAGAAAACATAACCATCTTT 57.039 32.000 0.00 0.00 30.76 2.52
3949 4068 8.494433 TCTATGGCTAGAAAACATAACCATCTT 58.506 33.333 0.00 0.00 37.58 2.40
3950 4069 7.934120 GTCTATGGCTAGAAAACATAACCATCT 59.066 37.037 0.00 0.00 37.58 2.90
3951 4070 7.715249 TGTCTATGGCTAGAAAACATAACCATC 59.285 37.037 0.00 0.00 37.58 3.51
3952 4071 7.573710 TGTCTATGGCTAGAAAACATAACCAT 58.426 34.615 0.00 0.00 39.62 3.55
3953 4072 6.953101 TGTCTATGGCTAGAAAACATAACCA 58.047 36.000 0.00 0.00 35.76 3.67
3954 4073 7.715249 TCATGTCTATGGCTAGAAAACATAACC 59.285 37.037 0.00 0.00 35.76 2.85
3955 4074 8.662781 TCATGTCTATGGCTAGAAAACATAAC 57.337 34.615 0.00 0.09 35.76 1.89
3956 4075 8.486210 ACTCATGTCTATGGCTAGAAAACATAA 58.514 33.333 0.00 0.00 35.76 1.90
3957 4076 8.023021 ACTCATGTCTATGGCTAGAAAACATA 57.977 34.615 0.00 0.00 35.76 2.29
3958 4077 6.893583 ACTCATGTCTATGGCTAGAAAACAT 58.106 36.000 0.00 0.00 35.76 2.71
3959 4078 6.299805 ACTCATGTCTATGGCTAGAAAACA 57.700 37.500 0.00 0.00 35.76 2.83
3960 4079 6.595716 ACAACTCATGTCTATGGCTAGAAAAC 59.404 38.462 0.00 0.00 37.96 2.43
3961 4080 6.711277 ACAACTCATGTCTATGGCTAGAAAA 58.289 36.000 0.00 0.00 37.96 2.29
3962 4081 6.299805 ACAACTCATGTCTATGGCTAGAAA 57.700 37.500 0.00 0.00 37.96 2.52
3963 4082 5.939764 ACAACTCATGTCTATGGCTAGAA 57.060 39.130 0.00 0.00 37.96 2.10
3976 4095 6.029607 CCCGTTAATCAAATGACAACTCATG 58.970 40.000 7.65 0.00 37.20 3.07
3977 4096 5.943416 TCCCGTTAATCAAATGACAACTCAT 59.057 36.000 7.65 0.00 38.94 2.90
3978 4097 5.309638 TCCCGTTAATCAAATGACAACTCA 58.690 37.500 7.65 0.00 0.00 3.41
3979 4098 5.873179 TCCCGTTAATCAAATGACAACTC 57.127 39.130 7.65 0.00 0.00 3.01
3980 4099 5.943416 TGATCCCGTTAATCAAATGACAACT 59.057 36.000 0.00 0.00 30.37 3.16
3981 4100 6.027749 GTGATCCCGTTAATCAAATGACAAC 58.972 40.000 0.00 0.00 35.04 3.32
3982 4101 5.707764 TGTGATCCCGTTAATCAAATGACAA 59.292 36.000 0.00 0.00 35.04 3.18
3983 4102 5.249420 TGTGATCCCGTTAATCAAATGACA 58.751 37.500 0.00 0.00 35.04 3.58
3984 4103 5.811399 TGTGATCCCGTTAATCAAATGAC 57.189 39.130 0.00 0.00 35.04 3.06
3985 4104 6.118852 TGATGTGATCCCGTTAATCAAATGA 58.881 36.000 0.00 0.00 32.39 2.57
3986 4105 6.375945 TGATGTGATCCCGTTAATCAAATG 57.624 37.500 0.00 0.00 32.39 2.32
3987 4106 7.587037 AATGATGTGATCCCGTTAATCAAAT 57.413 32.000 0.00 0.00 34.46 2.32
3988 4107 7.228507 CCTAATGATGTGATCCCGTTAATCAAA 59.771 37.037 0.00 0.00 35.04 2.69
3989 4108 6.710295 CCTAATGATGTGATCCCGTTAATCAA 59.290 38.462 0.00 0.00 35.04 2.57
3990 4109 6.042666 TCCTAATGATGTGATCCCGTTAATCA 59.957 38.462 0.00 0.00 0.00 2.57
3991 4110 6.464222 TCCTAATGATGTGATCCCGTTAATC 58.536 40.000 0.00 0.00 0.00 1.75
3992 4111 6.270000 TCTCCTAATGATGTGATCCCGTTAAT 59.730 38.462 0.00 0.00 0.00 1.40
3993 4112 5.600898 TCTCCTAATGATGTGATCCCGTTAA 59.399 40.000 0.00 0.00 0.00 2.01
3994 4113 5.144832 TCTCCTAATGATGTGATCCCGTTA 58.855 41.667 0.00 0.00 0.00 3.18
3995 4114 3.967326 TCTCCTAATGATGTGATCCCGTT 59.033 43.478 0.00 0.00 0.00 4.44
3996 4115 3.576861 TCTCCTAATGATGTGATCCCGT 58.423 45.455 0.00 0.00 0.00 5.28
3997 4116 4.607293 TTCTCCTAATGATGTGATCCCG 57.393 45.455 0.00 0.00 0.00 5.14
3998 4117 6.119240 TCATTCTCCTAATGATGTGATCCC 57.881 41.667 0.00 0.00 32.21 3.85
4006 4125 8.438373 AGTCAATCACATCATTCTCCTAATGAT 58.562 33.333 7.28 7.28 45.40 2.45
4007 4126 7.799081 AGTCAATCACATCATTCTCCTAATGA 58.201 34.615 3.13 3.13 40.50 2.57
4008 4127 8.343366 CAAGTCAATCACATCATTCTCCTAATG 58.657 37.037 0.00 0.00 0.00 1.90
4009 4128 8.270030 TCAAGTCAATCACATCATTCTCCTAAT 58.730 33.333 0.00 0.00 0.00 1.73
4010 4129 7.550551 GTCAAGTCAATCACATCATTCTCCTAA 59.449 37.037 0.00 0.00 0.00 2.69
4011 4130 7.044181 GTCAAGTCAATCACATCATTCTCCTA 58.956 38.462 0.00 0.00 0.00 2.94
4012 4131 5.879223 GTCAAGTCAATCACATCATTCTCCT 59.121 40.000 0.00 0.00 0.00 3.69
4013 4132 5.879223 AGTCAAGTCAATCACATCATTCTCC 59.121 40.000 0.00 0.00 0.00 3.71
4014 4133 6.592994 TGAGTCAAGTCAATCACATCATTCTC 59.407 38.462 0.00 0.00 0.00 2.87
4015 4134 6.470278 TGAGTCAAGTCAATCACATCATTCT 58.530 36.000 0.00 0.00 0.00 2.40
4016 4135 6.732531 TGAGTCAAGTCAATCACATCATTC 57.267 37.500 0.00 0.00 0.00 2.67
4017 4136 7.148120 GGAATGAGTCAAGTCAATCACATCATT 60.148 37.037 0.00 0.00 37.52 2.57
4018 4137 6.318144 GGAATGAGTCAAGTCAATCACATCAT 59.682 38.462 0.00 0.00 29.21 2.45
4019 4138 5.645067 GGAATGAGTCAAGTCAATCACATCA 59.355 40.000 0.00 0.00 29.21 3.07
4020 4139 5.220548 CGGAATGAGTCAAGTCAATCACATC 60.221 44.000 0.00 0.00 29.21 3.06
4021 4140 4.633126 CGGAATGAGTCAAGTCAATCACAT 59.367 41.667 0.00 0.00 29.21 3.21
4022 4141 3.996363 CGGAATGAGTCAAGTCAATCACA 59.004 43.478 0.00 0.00 29.21 3.58
4023 4142 3.997021 ACGGAATGAGTCAAGTCAATCAC 59.003 43.478 0.00 0.00 29.21 3.06
4024 4143 4.271696 ACGGAATGAGTCAAGTCAATCA 57.728 40.909 0.00 0.00 29.21 2.57
4025 4144 5.220491 GCTAACGGAATGAGTCAAGTCAATC 60.220 44.000 0.00 0.00 0.00 2.67
4026 4145 4.631813 GCTAACGGAATGAGTCAAGTCAAT 59.368 41.667 0.00 0.00 0.00 2.57
4027 4146 3.994392 GCTAACGGAATGAGTCAAGTCAA 59.006 43.478 0.00 0.00 0.00 3.18
4028 4147 3.258372 AGCTAACGGAATGAGTCAAGTCA 59.742 43.478 0.00 0.00 0.00 3.41
4029 4148 3.851098 AGCTAACGGAATGAGTCAAGTC 58.149 45.455 0.00 0.00 0.00 3.01
4030 4149 3.963428 AGCTAACGGAATGAGTCAAGT 57.037 42.857 0.00 0.00 0.00 3.16
4031 4150 4.268884 GCTAAGCTAACGGAATGAGTCAAG 59.731 45.833 0.00 0.00 0.00 3.02
4032 4151 4.181578 GCTAAGCTAACGGAATGAGTCAA 58.818 43.478 0.00 0.00 0.00 3.18
4033 4152 3.194755 TGCTAAGCTAACGGAATGAGTCA 59.805 43.478 0.00 0.00 0.00 3.41
4034 4153 3.552294 GTGCTAAGCTAACGGAATGAGTC 59.448 47.826 0.00 0.00 0.00 3.36
4035 4154 3.195825 AGTGCTAAGCTAACGGAATGAGT 59.804 43.478 0.00 0.00 0.00 3.41
4036 4155 3.786635 AGTGCTAAGCTAACGGAATGAG 58.213 45.455 0.00 0.00 0.00 2.90
4037 4156 3.733988 CGAGTGCTAAGCTAACGGAATGA 60.734 47.826 0.00 0.00 0.00 2.57
4038 4157 2.535984 CGAGTGCTAAGCTAACGGAATG 59.464 50.000 0.00 0.00 0.00 2.67
4039 4158 2.426024 TCGAGTGCTAAGCTAACGGAAT 59.574 45.455 0.00 0.00 0.00 3.01
4040 4159 1.814394 TCGAGTGCTAAGCTAACGGAA 59.186 47.619 0.00 0.00 0.00 4.30
4041 4160 1.456296 TCGAGTGCTAAGCTAACGGA 58.544 50.000 0.00 0.00 0.00 4.69
4042 4161 2.386249 GATCGAGTGCTAAGCTAACGG 58.614 52.381 0.00 0.00 0.00 4.44
4043 4162 2.037649 CGATCGAGTGCTAAGCTAACG 58.962 52.381 10.26 0.00 0.00 3.18
4044 4163 3.067721 ACGATCGAGTGCTAAGCTAAC 57.932 47.619 24.34 0.00 0.00 2.34
4045 4164 3.777465 AACGATCGAGTGCTAAGCTAA 57.223 42.857 24.34 0.00 0.00 3.09
4046 4165 3.777465 AAACGATCGAGTGCTAAGCTA 57.223 42.857 24.34 0.00 0.00 3.32
4047 4166 2.656560 AAACGATCGAGTGCTAAGCT 57.343 45.000 24.34 0.00 0.00 3.74
4048 4167 3.436496 ACTAAACGATCGAGTGCTAAGC 58.564 45.455 24.34 0.00 0.00 3.09
4049 4168 6.200100 ACATACTAAACGATCGAGTGCTAAG 58.800 40.000 24.34 10.81 0.00 2.18
4050 4169 6.127810 ACATACTAAACGATCGAGTGCTAA 57.872 37.500 24.34 0.00 0.00 3.09
4051 4170 5.746307 ACATACTAAACGATCGAGTGCTA 57.254 39.130 24.34 5.62 0.00 3.49
4052 4171 4.634184 ACATACTAAACGATCGAGTGCT 57.366 40.909 24.34 4.50 0.00 4.40
4053 4172 4.548346 GCAACATACTAAACGATCGAGTGC 60.548 45.833 24.34 10.18 0.00 4.40
4054 4173 4.798907 AGCAACATACTAAACGATCGAGTG 59.201 41.667 24.34 10.96 0.00 3.51
4055 4174 4.995124 AGCAACATACTAAACGATCGAGT 58.005 39.130 24.34 17.16 0.00 4.18
4056 4175 7.494130 CAATAGCAACATACTAAACGATCGAG 58.506 38.462 24.34 11.61 0.00 4.04
4057 4176 6.074516 GCAATAGCAACATACTAAACGATCGA 60.075 38.462 24.34 0.00 41.58 3.59
4058 4177 6.065153 GCAATAGCAACATACTAAACGATCG 58.935 40.000 14.88 14.88 41.58 3.69
4059 4178 7.178712 AGCAATAGCAACATACTAAACGATC 57.821 36.000 0.00 0.00 45.49 3.69
4060 4179 7.553881 AAGCAATAGCAACATACTAAACGAT 57.446 32.000 0.00 0.00 45.49 3.73
4061 4180 6.978343 AAGCAATAGCAACATACTAAACGA 57.022 33.333 0.00 0.00 45.49 3.85
4062 4181 7.464358 AGAAAGCAATAGCAACATACTAAACG 58.536 34.615 0.00 0.00 45.49 3.60
4063 4182 9.278734 GAAGAAAGCAATAGCAACATACTAAAC 57.721 33.333 0.00 0.00 45.49 2.01
4064 4183 9.008965 TGAAGAAAGCAATAGCAACATACTAAA 57.991 29.630 0.00 0.00 45.49 1.85
4065 4184 8.560355 TGAAGAAAGCAATAGCAACATACTAA 57.440 30.769 0.00 0.00 45.49 2.24
4066 4185 8.615211 CATGAAGAAAGCAATAGCAACATACTA 58.385 33.333 0.00 0.00 45.49 1.82
4067 4186 7.337689 TCATGAAGAAAGCAATAGCAACATACT 59.662 33.333 0.00 0.00 45.49 2.12
4068 4187 7.430502 GTCATGAAGAAAGCAATAGCAACATAC 59.569 37.037 0.00 0.00 45.49 2.39
4069 4188 7.337689 AGTCATGAAGAAAGCAATAGCAACATA 59.662 33.333 0.00 0.00 45.49 2.29
4070 4189 6.152323 AGTCATGAAGAAAGCAATAGCAACAT 59.848 34.615 0.00 0.00 45.49 2.71
4071 4190 5.474532 AGTCATGAAGAAAGCAATAGCAACA 59.525 36.000 0.00 0.00 45.49 3.33
4072 4191 5.947443 AGTCATGAAGAAAGCAATAGCAAC 58.053 37.500 0.00 0.00 45.49 4.17
4073 4192 6.579666 AAGTCATGAAGAAAGCAATAGCAA 57.420 33.333 0.00 0.00 45.49 3.91
4074 4193 7.870509 ATAAGTCATGAAGAAAGCAATAGCA 57.129 32.000 0.00 0.00 45.49 3.49
4075 4194 8.830580 TGTATAAGTCATGAAGAAAGCAATAGC 58.169 33.333 0.00 0.00 42.56 2.97
4078 4197 9.182214 ACATGTATAAGTCATGAAGAAAGCAAT 57.818 29.630 11.92 0.00 43.47 3.56
4079 4198 8.565896 ACATGTATAAGTCATGAAGAAAGCAA 57.434 30.769 11.92 0.00 43.47 3.91
4080 4199 8.565896 AACATGTATAAGTCATGAAGAAAGCA 57.434 30.769 0.00 0.00 43.47 3.91
4081 4200 8.125448 GGAACATGTATAAGTCATGAAGAAAGC 58.875 37.037 0.00 0.00 43.47 3.51
4082 4201 9.388506 AGGAACATGTATAAGTCATGAAGAAAG 57.611 33.333 0.00 0.00 43.47 2.62
4085 4204 9.987272 CATAGGAACATGTATAAGTCATGAAGA 57.013 33.333 0.00 0.00 43.47 2.87
4086 4205 9.987272 TCATAGGAACATGTATAAGTCATGAAG 57.013 33.333 0.00 0.00 43.47 3.02
4087 4206 9.764363 GTCATAGGAACATGTATAAGTCATGAA 57.236 33.333 0.00 0.00 43.47 2.57
4088 4207 9.147732 AGTCATAGGAACATGTATAAGTCATGA 57.852 33.333 0.00 0.00 43.47 3.07
4100 4219 9.096160 GCATAATCTCATAGTCATAGGAACATG 57.904 37.037 0.00 0.00 0.00 3.21
4101 4220 8.819845 TGCATAATCTCATAGTCATAGGAACAT 58.180 33.333 0.00 0.00 0.00 2.71
4102 4221 8.193953 TGCATAATCTCATAGTCATAGGAACA 57.806 34.615 0.00 0.00 0.00 3.18
4103 4222 8.930760 GTTGCATAATCTCATAGTCATAGGAAC 58.069 37.037 0.00 0.00 0.00 3.62
4104 4223 8.874156 AGTTGCATAATCTCATAGTCATAGGAA 58.126 33.333 0.00 0.00 0.00 3.36
4105 4224 8.427902 AGTTGCATAATCTCATAGTCATAGGA 57.572 34.615 0.00 0.00 0.00 2.94
4106 4225 7.763528 GGAGTTGCATAATCTCATAGTCATAGG 59.236 40.741 0.00 0.00 0.00 2.57
4107 4226 7.763528 GGGAGTTGCATAATCTCATAGTCATAG 59.236 40.741 0.00 0.00 0.00 2.23
4108 4227 7.577616 CGGGAGTTGCATAATCTCATAGTCATA 60.578 40.741 0.00 0.00 0.00 2.15
4109 4228 6.471146 GGGAGTTGCATAATCTCATAGTCAT 58.529 40.000 0.00 0.00 0.00 3.06
4110 4229 5.509670 CGGGAGTTGCATAATCTCATAGTCA 60.510 44.000 0.00 0.00 0.00 3.41
4111 4230 4.926238 CGGGAGTTGCATAATCTCATAGTC 59.074 45.833 0.00 0.00 0.00 2.59
4112 4231 4.345257 ACGGGAGTTGCATAATCTCATAGT 59.655 41.667 0.00 0.00 43.33 2.12
4113 4232 4.887748 ACGGGAGTTGCATAATCTCATAG 58.112 43.478 0.00 0.00 43.33 2.23
4114 4233 4.955811 ACGGGAGTTGCATAATCTCATA 57.044 40.909 0.00 0.00 43.33 2.15
4115 4234 3.845781 ACGGGAGTTGCATAATCTCAT 57.154 42.857 0.00 0.00 43.33 2.90
4133 4252 2.159327 AAGTGTTCCTCCGGTAAACG 57.841 50.000 0.00 0.00 43.80 3.60
4134 4253 3.002965 CACAAAGTGTTCCTCCGGTAAAC 59.997 47.826 0.00 5.38 0.00 2.01
4135 4254 3.207778 CACAAAGTGTTCCTCCGGTAAA 58.792 45.455 0.00 0.00 0.00 2.01
4136 4255 2.171027 ACACAAAGTGTTCCTCCGGTAA 59.829 45.455 0.00 0.00 45.08 2.85
4137 4256 1.764134 ACACAAAGTGTTCCTCCGGTA 59.236 47.619 0.00 0.00 45.08 4.02
4138 4257 0.544697 ACACAAAGTGTTCCTCCGGT 59.455 50.000 0.00 0.00 45.08 5.28
4139 4258 0.944386 CACACAAAGTGTTCCTCCGG 59.056 55.000 0.00 0.00 45.08 5.14
4140 4259 0.307760 GCACACAAAGTGTTCCTCCG 59.692 55.000 0.00 0.00 45.08 4.63
4141 4260 1.680338 AGCACACAAAGTGTTCCTCC 58.320 50.000 0.00 0.00 45.08 4.30
4142 4261 2.548480 GGTAGCACACAAAGTGTTCCTC 59.452 50.000 0.00 0.00 45.08 3.71
4143 4262 2.092646 TGGTAGCACACAAAGTGTTCCT 60.093 45.455 0.00 3.24 45.08 3.36
4144 4263 2.294074 TGGTAGCACACAAAGTGTTCC 58.706 47.619 0.00 2.65 45.08 3.62
4145 4264 4.102649 GTTTGGTAGCACACAAAGTGTTC 58.897 43.478 6.34 0.00 45.08 3.18
4146 4265 3.426963 CGTTTGGTAGCACACAAAGTGTT 60.427 43.478 11.43 0.00 45.08 3.32
4149 4268 2.353579 GACGTTTGGTAGCACACAAAGT 59.646 45.455 11.43 4.36 37.27 2.66
4150 4269 2.353269 TGACGTTTGGTAGCACACAAAG 59.647 45.455 11.43 1.31 37.27 2.77
4151 4270 2.096174 GTGACGTTTGGTAGCACACAAA 59.904 45.455 11.43 0.00 34.48 2.83
4152 4271 1.666700 GTGACGTTTGGTAGCACACAA 59.333 47.619 11.43 0.00 0.00 3.33
4153 4272 1.292061 GTGACGTTTGGTAGCACACA 58.708 50.000 11.43 0.00 0.00 3.72
4154 4273 1.292061 TGTGACGTTTGGTAGCACAC 58.708 50.000 1.04 1.04 34.85 3.82
4155 4274 1.666700 GTTGTGACGTTTGGTAGCACA 59.333 47.619 0.00 0.34 37.66 4.57
4156 4275 1.332552 CGTTGTGACGTTTGGTAGCAC 60.333 52.381 0.00 0.00 44.08 4.40
4157 4276 0.931702 CGTTGTGACGTTTGGTAGCA 59.068 50.000 0.00 0.00 44.08 3.49
4158 4277 3.721466 CGTTGTGACGTTTGGTAGC 57.279 52.632 0.00 0.00 44.08 3.58
4168 4287 2.228138 TCACCCAGTTACGTTGTGAC 57.772 50.000 0.00 0.00 31.45 3.67
4169 4288 3.478857 AATCACCCAGTTACGTTGTGA 57.521 42.857 0.00 6.41 39.95 3.58
4170 4289 6.971527 TTATAATCACCCAGTTACGTTGTG 57.028 37.500 0.00 0.00 0.00 3.33
4171 4290 6.596497 CCTTTATAATCACCCAGTTACGTTGT 59.404 38.462 0.00 0.00 0.00 3.32
4172 4291 6.596497 ACCTTTATAATCACCCAGTTACGTTG 59.404 38.462 0.00 0.00 0.00 4.10
4173 4292 6.596497 CACCTTTATAATCACCCAGTTACGTT 59.404 38.462 0.00 0.00 0.00 3.99
4174 4293 6.110707 CACCTTTATAATCACCCAGTTACGT 58.889 40.000 0.00 0.00 0.00 3.57
4175 4294 5.007332 GCACCTTTATAATCACCCAGTTACG 59.993 44.000 0.00 0.00 0.00 3.18
4176 4295 6.120220 AGCACCTTTATAATCACCCAGTTAC 58.880 40.000 0.00 0.00 0.00 2.50
4177 4296 6.157994 AGAGCACCTTTATAATCACCCAGTTA 59.842 38.462 0.00 0.00 0.00 2.24
4178 4297 5.044846 AGAGCACCTTTATAATCACCCAGTT 60.045 40.000 0.00 0.00 0.00 3.16
4179 4298 4.475016 AGAGCACCTTTATAATCACCCAGT 59.525 41.667 0.00 0.00 0.00 4.00
4180 4299 5.041191 AGAGCACCTTTATAATCACCCAG 57.959 43.478 0.00 0.00 0.00 4.45
4181 4300 5.427157 TGTAGAGCACCTTTATAATCACCCA 59.573 40.000 0.00 0.00 0.00 4.51
4182 4301 5.925509 TGTAGAGCACCTTTATAATCACCC 58.074 41.667 0.00 0.00 0.00 4.61
4183 4302 5.992217 CCTGTAGAGCACCTTTATAATCACC 59.008 44.000 0.00 0.00 0.00 4.02
4184 4303 6.480320 CACCTGTAGAGCACCTTTATAATCAC 59.520 42.308 0.00 0.00 0.00 3.06
4185 4304 6.156256 ACACCTGTAGAGCACCTTTATAATCA 59.844 38.462 0.00 0.00 0.00 2.57
4186 4305 6.583562 ACACCTGTAGAGCACCTTTATAATC 58.416 40.000 0.00 0.00 0.00 1.75
4187 4306 6.561519 ACACCTGTAGAGCACCTTTATAAT 57.438 37.500 0.00 0.00 0.00 1.28


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.