Multiple sequence alignment - TraesCS7D01G141800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G141800 chr7D 100.000 2788 0 0 1 2788 90578629 90581416 0.000000e+00 5149
1 TraesCS7D01G141800 chr7A 90.950 2221 173 13 582 2788 91914415 91916621 0.000000e+00 2963
2 TraesCS7D01G141800 chr1D 84.049 489 69 6 1069 1557 41588860 41589339 1.960000e-126 462
3 TraesCS7D01G141800 chr5D 77.926 299 57 8 1013 1306 537775683 537775389 7.940000e-41 178
4 TraesCS7D01G141800 chr6B 78.968 252 42 6 1011 1256 18638938 18638692 7.990000e-36 161
5 TraesCS7D01G141800 chr6B 80.791 177 34 0 1082 1258 18837369 18837545 3.740000e-29 139
6 TraesCS7D01G141800 chr5B 77.224 281 54 9 1022 1297 679046688 679046413 3.720000e-34 156
7 TraesCS7D01G141800 chr5B 79.907 214 39 3 1088 1299 678518472 678518261 1.340000e-33 154
8 TraesCS7D01G141800 chr6A 80.000 175 35 0 1082 1256 11649155 11649329 2.250000e-26 130
9 TraesCS7D01G141800 chr1B 79.592 196 28 9 360 550 210207499 210207311 2.250000e-26 130
10 TraesCS7D01G141800 chrUn 78.977 176 36 1 1092 1267 71129685 71129511 4.880000e-23 119


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G141800 chr7D 90578629 90581416 2787 False 5149 5149 100.00 1 2788 1 chr7D.!!$F1 2787
1 TraesCS7D01G141800 chr7A 91914415 91916621 2206 False 2963 2963 90.95 582 2788 1 chr7A.!!$F1 2206

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
216 217 0.035439 TGGCTAAGCACCTTGGTAGC 60.035 55.0 4.23 4.23 0.00 3.58 F
248 249 0.037697 TTCCGTCACGATGGGTTCTG 60.038 55.0 0.00 0.00 38.05 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1457 1472 0.179089 CCAGGTCTCCAGCTTGATCG 60.179 60.0 0.00 0.00 0.0 3.69 R
1894 1909 0.321653 AAACAGGGCAGGTCGACATC 60.322 55.0 18.91 5.15 0.0 3.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 8.745464 GGTCGGTTATTTTTGCTATGTAAAAA 57.255 30.769 8.28 8.28 40.19 1.94
49 50 8.825667 AAATATACAAAGGAAAAATGTTGCGT 57.174 26.923 0.00 0.00 0.00 5.24
50 51 8.460831 AATATACAAAGGAAAAATGTTGCGTC 57.539 30.769 0.00 0.00 0.00 5.19
51 52 3.453424 ACAAAGGAAAAATGTTGCGTCC 58.547 40.909 0.00 0.00 0.00 4.79
52 53 2.415697 AAGGAAAAATGTTGCGTCCG 57.584 45.000 0.00 0.00 33.38 4.79
53 54 0.039527 AGGAAAAATGTTGCGTCCGC 60.040 50.000 4.42 4.42 42.35 5.54
54 55 0.039527 GGAAAAATGTTGCGTCCGCT 60.040 50.000 13.31 0.00 42.51 5.52
55 56 1.601914 GGAAAAATGTTGCGTCCGCTT 60.602 47.619 13.31 0.00 42.51 4.68
56 57 2.124122 GAAAAATGTTGCGTCCGCTTT 58.876 42.857 13.31 3.80 42.51 3.51
57 58 2.217429 AAAATGTTGCGTCCGCTTTT 57.783 40.000 13.31 8.16 42.51 2.27
58 59 2.217429 AAATGTTGCGTCCGCTTTTT 57.783 40.000 13.31 4.90 42.51 1.94
59 60 3.357166 AAATGTTGCGTCCGCTTTTTA 57.643 38.095 13.31 0.00 42.51 1.52
60 61 3.569250 AATGTTGCGTCCGCTTTTTAT 57.431 38.095 13.31 0.00 42.51 1.40
61 62 3.569250 ATGTTGCGTCCGCTTTTTATT 57.431 38.095 13.31 0.00 42.51 1.40
62 63 3.357166 TGTTGCGTCCGCTTTTTATTT 57.643 38.095 13.31 0.00 42.51 1.40
63 64 3.046390 TGTTGCGTCCGCTTTTTATTTG 58.954 40.909 13.31 0.00 42.51 2.32
64 65 2.339728 TGCGTCCGCTTTTTATTTGG 57.660 45.000 13.31 0.00 42.51 3.28
65 66 1.609555 TGCGTCCGCTTTTTATTTGGT 59.390 42.857 13.31 0.00 42.51 3.67
66 67 1.982913 GCGTCCGCTTTTTATTTGGTG 59.017 47.619 4.10 0.00 38.26 4.17
67 68 1.982913 CGTCCGCTTTTTATTTGGTGC 59.017 47.619 0.00 0.00 0.00 5.01
68 69 2.605823 CGTCCGCTTTTTATTTGGTGCA 60.606 45.455 0.00 0.00 0.00 4.57
69 70 2.729360 GTCCGCTTTTTATTTGGTGCAC 59.271 45.455 8.80 8.80 0.00 4.57
70 71 2.625790 TCCGCTTTTTATTTGGTGCACT 59.374 40.909 17.98 0.00 0.00 4.40
71 72 2.730928 CCGCTTTTTATTTGGTGCACTG 59.269 45.455 17.98 0.00 0.00 3.66
72 73 2.730928 CGCTTTTTATTTGGTGCACTGG 59.269 45.455 17.98 0.00 0.00 4.00
73 74 3.066380 GCTTTTTATTTGGTGCACTGGG 58.934 45.455 17.98 0.00 0.00 4.45
74 75 3.494223 GCTTTTTATTTGGTGCACTGGGT 60.494 43.478 17.98 3.77 0.00 4.51
75 76 4.702831 CTTTTTATTTGGTGCACTGGGTT 58.297 39.130 17.98 1.07 0.00 4.11
76 77 3.742433 TTTATTTGGTGCACTGGGTTG 57.258 42.857 17.98 0.00 0.00 3.77
77 78 1.626686 TATTTGGTGCACTGGGTTGG 58.373 50.000 17.98 0.00 0.00 3.77
78 79 0.105760 ATTTGGTGCACTGGGTTGGA 60.106 50.000 17.98 0.00 0.00 3.53
79 80 0.105760 TTTGGTGCACTGGGTTGGAT 60.106 50.000 17.98 0.00 0.00 3.41
80 81 0.827089 TTGGTGCACTGGGTTGGATG 60.827 55.000 17.98 0.00 0.00 3.51
81 82 1.978617 GGTGCACTGGGTTGGATGG 60.979 63.158 17.98 0.00 0.00 3.51
82 83 2.283101 TGCACTGGGTTGGATGGC 60.283 61.111 0.00 0.00 0.00 4.40
83 84 3.070576 GCACTGGGTTGGATGGCC 61.071 66.667 0.00 0.00 0.00 5.36
84 85 2.440147 CACTGGGTTGGATGGCCA 59.560 61.111 8.56 8.56 44.17 5.36
85 86 1.679977 CACTGGGTTGGATGGCCAG 60.680 63.158 13.05 0.00 46.91 4.85
86 87 2.162906 ACTGGGTTGGATGGCCAGT 61.163 57.895 13.05 0.00 46.91 4.00
87 88 1.077265 CTGGGTTGGATGGCCAGTT 59.923 57.895 13.05 0.00 46.91 3.16
88 89 0.967380 CTGGGTTGGATGGCCAGTTC 60.967 60.000 13.05 4.33 46.91 3.01
89 90 1.682344 GGGTTGGATGGCCAGTTCC 60.682 63.158 17.28 17.28 46.91 3.62
90 91 1.384191 GGTTGGATGGCCAGTTCCT 59.616 57.895 23.06 0.70 46.91 3.36
91 92 0.681243 GGTTGGATGGCCAGTTCCTC 60.681 60.000 23.06 16.20 46.91 3.71
92 93 0.329596 GTTGGATGGCCAGTTCCTCT 59.670 55.000 23.06 0.00 46.91 3.69
93 94 1.559682 GTTGGATGGCCAGTTCCTCTA 59.440 52.381 23.06 6.12 46.91 2.43
94 95 1.965414 TGGATGGCCAGTTCCTCTAA 58.035 50.000 23.06 3.32 39.92 2.10
95 96 2.274542 TGGATGGCCAGTTCCTCTAAA 58.725 47.619 23.06 2.97 39.92 1.85
96 97 2.239654 TGGATGGCCAGTTCCTCTAAAG 59.760 50.000 23.06 0.00 39.92 1.85
97 98 2.239907 GGATGGCCAGTTCCTCTAAAGT 59.760 50.000 16.91 0.00 0.00 2.66
98 99 3.308473 GGATGGCCAGTTCCTCTAAAGTT 60.308 47.826 16.91 0.00 0.00 2.66
99 100 3.140325 TGGCCAGTTCCTCTAAAGTTG 57.860 47.619 0.00 0.00 0.00 3.16
100 101 2.441750 TGGCCAGTTCCTCTAAAGTTGT 59.558 45.455 0.00 0.00 0.00 3.32
101 102 3.075148 GGCCAGTTCCTCTAAAGTTGTC 58.925 50.000 0.00 0.00 0.00 3.18
102 103 3.075148 GCCAGTTCCTCTAAAGTTGTCC 58.925 50.000 0.00 0.00 0.00 4.02
103 104 3.326747 CCAGTTCCTCTAAAGTTGTCCG 58.673 50.000 0.00 0.00 0.00 4.79
104 105 2.737252 CAGTTCCTCTAAAGTTGTCCGC 59.263 50.000 0.00 0.00 0.00 5.54
105 106 2.367567 AGTTCCTCTAAAGTTGTCCGCA 59.632 45.455 0.00 0.00 0.00 5.69
106 107 2.737252 GTTCCTCTAAAGTTGTCCGCAG 59.263 50.000 0.00 0.00 0.00 5.18
107 108 2.244695 TCCTCTAAAGTTGTCCGCAGA 58.755 47.619 0.00 0.00 0.00 4.26
108 109 2.029290 TCCTCTAAAGTTGTCCGCAGAC 60.029 50.000 0.00 0.00 43.83 3.51
123 124 3.290776 AGACACGTCTGAAGTTGCC 57.709 52.632 0.00 0.00 38.75 4.52
124 125 0.249911 AGACACGTCTGAAGTTGCCC 60.250 55.000 0.00 0.00 38.75 5.36
125 126 0.249911 GACACGTCTGAAGTTGCCCT 60.250 55.000 0.00 0.00 0.00 5.19
126 127 1.000506 GACACGTCTGAAGTTGCCCTA 59.999 52.381 0.00 0.00 0.00 3.53
127 128 1.414919 ACACGTCTGAAGTTGCCCTAA 59.585 47.619 0.00 0.00 0.00 2.69
128 129 2.069273 CACGTCTGAAGTTGCCCTAAG 58.931 52.381 0.00 0.00 0.00 2.18
129 130 1.692519 ACGTCTGAAGTTGCCCTAAGT 59.307 47.619 0.00 0.00 0.00 2.24
130 131 2.288886 ACGTCTGAAGTTGCCCTAAGTC 60.289 50.000 0.00 0.00 0.00 3.01
131 132 2.288825 CGTCTGAAGTTGCCCTAAGTCA 60.289 50.000 0.00 0.00 0.00 3.41
132 133 3.617531 CGTCTGAAGTTGCCCTAAGTCAT 60.618 47.826 0.00 0.00 0.00 3.06
133 134 3.935828 GTCTGAAGTTGCCCTAAGTCATC 59.064 47.826 0.00 0.00 0.00 2.92
134 135 3.840666 TCTGAAGTTGCCCTAAGTCATCT 59.159 43.478 0.00 0.00 0.00 2.90
135 136 4.081420 TCTGAAGTTGCCCTAAGTCATCTC 60.081 45.833 0.00 0.00 0.00 2.75
136 137 3.840666 TGAAGTTGCCCTAAGTCATCTCT 59.159 43.478 0.00 0.00 0.00 3.10
137 138 4.081420 TGAAGTTGCCCTAAGTCATCTCTC 60.081 45.833 0.00 0.00 0.00 3.20
138 139 3.718723 AGTTGCCCTAAGTCATCTCTCT 58.281 45.455 0.00 0.00 0.00 3.10
139 140 4.873010 AGTTGCCCTAAGTCATCTCTCTA 58.127 43.478 0.00 0.00 0.00 2.43
140 141 5.463154 AGTTGCCCTAAGTCATCTCTCTAT 58.537 41.667 0.00 0.00 0.00 1.98
141 142 5.538433 AGTTGCCCTAAGTCATCTCTCTATC 59.462 44.000 0.00 0.00 0.00 2.08
142 143 5.066913 TGCCCTAAGTCATCTCTCTATCA 57.933 43.478 0.00 0.00 0.00 2.15
143 144 5.076182 TGCCCTAAGTCATCTCTCTATCAG 58.924 45.833 0.00 0.00 0.00 2.90
144 145 5.076873 GCCCTAAGTCATCTCTCTATCAGT 58.923 45.833 0.00 0.00 0.00 3.41
145 146 5.048083 GCCCTAAGTCATCTCTCTATCAGTG 60.048 48.000 0.00 0.00 0.00 3.66
146 147 5.476599 CCCTAAGTCATCTCTCTATCAGTGG 59.523 48.000 0.00 0.00 0.00 4.00
147 148 6.303054 CCTAAGTCATCTCTCTATCAGTGGA 58.697 44.000 0.00 0.00 0.00 4.02
148 149 6.947733 CCTAAGTCATCTCTCTATCAGTGGAT 59.052 42.308 0.00 0.00 37.55 3.41
149 150 8.106462 CCTAAGTCATCTCTCTATCAGTGGATA 58.894 40.741 0.00 0.00 34.89 2.59
150 151 9.685276 CTAAGTCATCTCTCTATCAGTGGATAT 57.315 37.037 0.00 0.00 35.52 1.63
153 154 9.461312 AGTCATCTCTCTATCAGTGGATATAAC 57.539 37.037 0.00 0.00 35.52 1.89
154 155 8.682710 GTCATCTCTCTATCAGTGGATATAACC 58.317 40.741 0.00 0.00 35.52 2.85
155 156 7.836685 TCATCTCTCTATCAGTGGATATAACCC 59.163 40.741 0.00 0.00 35.52 4.11
156 157 6.494952 TCTCTCTATCAGTGGATATAACCCC 58.505 44.000 0.00 0.00 35.52 4.95
157 158 5.262009 TCTCTATCAGTGGATATAACCCCG 58.738 45.833 0.00 0.00 35.52 5.73
158 159 5.006896 TCTATCAGTGGATATAACCCCGT 57.993 43.478 0.00 0.00 35.52 5.28
159 160 5.399991 TCTATCAGTGGATATAACCCCGTT 58.600 41.667 0.00 0.00 35.52 4.44
160 161 3.830744 TCAGTGGATATAACCCCGTTG 57.169 47.619 0.00 0.00 0.00 4.10
161 162 3.376636 TCAGTGGATATAACCCCGTTGA 58.623 45.455 0.00 0.00 0.00 3.18
162 163 3.386726 TCAGTGGATATAACCCCGTTGAG 59.613 47.826 0.00 0.00 0.00 3.02
163 164 2.104281 AGTGGATATAACCCCGTTGAGC 59.896 50.000 0.00 0.00 0.00 4.26
164 165 2.120312 TGGATATAACCCCGTTGAGCA 58.880 47.619 0.00 0.00 0.00 4.26
165 166 2.506231 TGGATATAACCCCGTTGAGCAA 59.494 45.455 0.00 0.00 0.00 3.91
166 167 3.139077 GGATATAACCCCGTTGAGCAAG 58.861 50.000 0.00 0.00 0.00 4.01
167 168 2.032680 TATAACCCCGTTGAGCAAGC 57.967 50.000 0.00 0.00 0.00 4.01
168 169 0.679960 ATAACCCCGTTGAGCAAGCC 60.680 55.000 0.00 0.00 0.00 4.35
169 170 2.058125 TAACCCCGTTGAGCAAGCCA 62.058 55.000 0.00 0.00 0.00 4.75
170 171 2.597217 CCCCGTTGAGCAAGCCAA 60.597 61.111 0.00 0.00 0.00 4.52
171 172 2.629656 CCCCGTTGAGCAAGCCAAG 61.630 63.158 0.00 0.00 0.00 3.61
172 173 1.600636 CCCGTTGAGCAAGCCAAGA 60.601 57.895 0.00 0.00 0.00 3.02
173 174 1.580845 CCCGTTGAGCAAGCCAAGAG 61.581 60.000 0.00 0.00 0.00 2.85
174 175 1.580845 CCGTTGAGCAAGCCAAGAGG 61.581 60.000 0.00 0.00 38.23 3.69
175 176 1.580845 CGTTGAGCAAGCCAAGAGGG 61.581 60.000 0.00 0.00 40.85 4.30
176 177 0.250901 GTTGAGCAAGCCAAGAGGGA 60.251 55.000 0.00 0.00 40.01 4.20
177 178 0.700564 TTGAGCAAGCCAAGAGGGAT 59.299 50.000 0.00 0.00 40.01 3.85
179 180 1.076024 TGAGCAAGCCAAGAGGGATTT 59.924 47.619 0.00 0.00 44.71 2.17
180 181 1.475682 GAGCAAGCCAAGAGGGATTTG 59.524 52.381 0.00 0.00 44.71 2.32
181 182 1.203100 AGCAAGCCAAGAGGGATTTGT 60.203 47.619 0.00 0.00 44.71 2.83
182 183 1.067354 GCAAGCCAAGAGGGATTTGTG 60.067 52.381 0.00 0.00 44.71 3.33
183 184 2.517959 CAAGCCAAGAGGGATTTGTGA 58.482 47.619 0.00 0.00 44.71 3.58
184 185 2.490903 CAAGCCAAGAGGGATTTGTGAG 59.509 50.000 0.00 0.00 44.71 3.51
185 186 1.707427 AGCCAAGAGGGATTTGTGAGT 59.293 47.619 0.00 0.00 40.01 3.41
186 187 2.108952 AGCCAAGAGGGATTTGTGAGTT 59.891 45.455 0.00 0.00 40.01 3.01
187 188 2.229784 GCCAAGAGGGATTTGTGAGTTG 59.770 50.000 0.00 0.00 40.01 3.16
188 189 3.754965 CCAAGAGGGATTTGTGAGTTGA 58.245 45.455 0.00 0.00 40.01 3.18
189 190 3.503748 CCAAGAGGGATTTGTGAGTTGAC 59.496 47.826 0.00 0.00 40.01 3.18
190 191 4.392940 CAAGAGGGATTTGTGAGTTGACT 58.607 43.478 0.00 0.00 0.00 3.41
191 192 4.713792 AGAGGGATTTGTGAGTTGACTT 57.286 40.909 0.00 0.00 0.00 3.01
192 193 4.646572 AGAGGGATTTGTGAGTTGACTTC 58.353 43.478 0.00 0.00 0.00 3.01
193 194 3.753797 GAGGGATTTGTGAGTTGACTTCC 59.246 47.826 0.00 0.00 0.00 3.46
194 195 3.138283 AGGGATTTGTGAGTTGACTTCCA 59.862 43.478 0.00 0.00 0.00 3.53
195 196 3.503748 GGGATTTGTGAGTTGACTTCCAG 59.496 47.826 0.00 0.00 0.00 3.86
196 197 4.389374 GGATTTGTGAGTTGACTTCCAGA 58.611 43.478 0.00 0.00 0.00 3.86
197 198 5.006386 GGATTTGTGAGTTGACTTCCAGAT 58.994 41.667 0.00 0.00 0.00 2.90
198 199 5.106396 GGATTTGTGAGTTGACTTCCAGATG 60.106 44.000 0.00 0.00 0.00 2.90
199 200 3.407424 TGTGAGTTGACTTCCAGATGG 57.593 47.619 0.00 0.00 0.00 3.51
200 201 2.079925 GTGAGTTGACTTCCAGATGGC 58.920 52.381 0.00 0.00 34.44 4.40
201 202 1.980765 TGAGTTGACTTCCAGATGGCT 59.019 47.619 0.00 0.00 34.44 4.75
202 203 3.055819 GTGAGTTGACTTCCAGATGGCTA 60.056 47.826 0.00 0.00 34.44 3.93
203 204 3.582647 TGAGTTGACTTCCAGATGGCTAA 59.417 43.478 0.00 0.00 34.44 3.09
204 205 4.187694 GAGTTGACTTCCAGATGGCTAAG 58.812 47.826 0.00 0.00 34.44 2.18
205 206 2.680339 GTTGACTTCCAGATGGCTAAGC 59.320 50.000 0.00 0.00 34.44 3.09
206 207 1.908619 TGACTTCCAGATGGCTAAGCA 59.091 47.619 0.00 0.00 34.44 3.91
207 208 2.284190 GACTTCCAGATGGCTAAGCAC 58.716 52.381 0.00 0.00 34.44 4.40
208 209 1.065126 ACTTCCAGATGGCTAAGCACC 60.065 52.381 0.00 0.00 34.44 5.01
209 210 1.211457 CTTCCAGATGGCTAAGCACCT 59.789 52.381 0.00 0.00 34.44 4.00
210 211 1.289160 TCCAGATGGCTAAGCACCTT 58.711 50.000 0.00 0.00 34.44 3.50
211 212 1.065199 TCCAGATGGCTAAGCACCTTG 60.065 52.381 0.00 0.00 34.44 3.61
212 213 1.386533 CAGATGGCTAAGCACCTTGG 58.613 55.000 0.00 0.00 0.00 3.61
213 214 0.995024 AGATGGCTAAGCACCTTGGT 59.005 50.000 0.00 0.00 0.00 3.67
214 215 2.092968 CAGATGGCTAAGCACCTTGGTA 60.093 50.000 0.00 0.00 0.00 3.25
215 216 2.171448 AGATGGCTAAGCACCTTGGTAG 59.829 50.000 0.00 0.00 0.00 3.18
216 217 0.035439 TGGCTAAGCACCTTGGTAGC 60.035 55.000 4.23 4.23 0.00 3.58
217 218 0.748367 GGCTAAGCACCTTGGTAGCC 60.748 60.000 13.56 13.56 37.42 3.93
218 219 1.090052 GCTAAGCACCTTGGTAGCCG 61.090 60.000 9.44 0.00 0.00 5.52
219 220 1.078708 TAAGCACCTTGGTAGCCGC 60.079 57.895 9.44 2.23 0.00 6.53
220 221 2.845752 TAAGCACCTTGGTAGCCGCG 62.846 60.000 0.00 0.00 0.00 6.46
226 227 4.010224 TTGGTAGCCGCGCCAAGA 62.010 61.111 15.44 0.00 39.57 3.02
227 228 3.538785 TTGGTAGCCGCGCCAAGAA 62.539 57.895 15.44 0.00 39.57 2.52
228 229 2.744709 GGTAGCCGCGCCAAGAAA 60.745 61.111 0.00 0.00 0.00 2.52
229 230 2.112815 GGTAGCCGCGCCAAGAAAT 61.113 57.895 0.00 0.00 0.00 2.17
230 231 1.654023 GGTAGCCGCGCCAAGAAATT 61.654 55.000 0.00 0.00 0.00 1.82
231 232 0.248094 GTAGCCGCGCCAAGAAATTC 60.248 55.000 0.00 0.00 0.00 2.17
232 233 1.373590 TAGCCGCGCCAAGAAATTCC 61.374 55.000 0.00 0.00 0.00 3.01
233 234 2.100216 CCGCGCCAAGAAATTCCG 59.900 61.111 0.00 0.00 0.00 4.30
234 235 2.686816 CCGCGCCAAGAAATTCCGT 61.687 57.895 0.00 0.00 0.00 4.69
235 236 1.226018 CGCGCCAAGAAATTCCGTC 60.226 57.895 0.00 0.00 0.00 4.79
236 237 1.873165 GCGCCAAGAAATTCCGTCA 59.127 52.632 0.00 0.00 0.00 4.35
237 238 0.454452 GCGCCAAGAAATTCCGTCAC 60.454 55.000 0.00 0.00 0.00 3.67
238 239 0.179225 CGCCAAGAAATTCCGTCACG 60.179 55.000 0.00 0.00 0.00 4.35
239 240 1.153353 GCCAAGAAATTCCGTCACGA 58.847 50.000 0.00 0.00 0.00 4.35
240 241 1.737793 GCCAAGAAATTCCGTCACGAT 59.262 47.619 0.00 0.00 0.00 3.73
241 242 2.476185 GCCAAGAAATTCCGTCACGATG 60.476 50.000 0.00 0.00 0.00 3.84
242 243 2.095853 CCAAGAAATTCCGTCACGATGG 59.904 50.000 0.00 0.00 38.85 3.51
243 244 2.024176 AGAAATTCCGTCACGATGGG 57.976 50.000 0.00 0.00 38.05 4.00
244 245 1.278127 AGAAATTCCGTCACGATGGGT 59.722 47.619 0.00 0.00 38.05 4.51
245 246 2.081462 GAAATTCCGTCACGATGGGTT 58.919 47.619 0.00 0.00 38.05 4.11
246 247 1.734163 AATTCCGTCACGATGGGTTC 58.266 50.000 0.00 0.00 38.05 3.62
247 248 0.902531 ATTCCGTCACGATGGGTTCT 59.097 50.000 0.00 0.00 38.05 3.01
248 249 0.037697 TTCCGTCACGATGGGTTCTG 60.038 55.000 0.00 0.00 38.05 3.02
249 250 2.100631 CCGTCACGATGGGTTCTGC 61.101 63.158 0.00 0.00 33.82 4.26
250 251 1.079819 CGTCACGATGGGTTCTGCT 60.080 57.895 0.00 0.00 0.00 4.24
251 252 0.670546 CGTCACGATGGGTTCTGCTT 60.671 55.000 0.00 0.00 0.00 3.91
252 253 1.403647 CGTCACGATGGGTTCTGCTTA 60.404 52.381 0.00 0.00 0.00 3.09
253 254 2.000447 GTCACGATGGGTTCTGCTTAC 59.000 52.381 0.00 0.00 0.00 2.34
254 255 0.999406 CACGATGGGTTCTGCTTACG 59.001 55.000 0.00 0.00 0.00 3.18
255 256 0.606604 ACGATGGGTTCTGCTTACGT 59.393 50.000 0.00 0.00 0.00 3.57
256 257 1.278238 CGATGGGTTCTGCTTACGTC 58.722 55.000 0.00 0.00 0.00 4.34
257 258 1.278238 GATGGGTTCTGCTTACGTCG 58.722 55.000 0.00 0.00 0.00 5.12
258 259 0.606604 ATGGGTTCTGCTTACGTCGT 59.393 50.000 2.21 2.21 0.00 4.34
259 260 0.038892 TGGGTTCTGCTTACGTCGTC 60.039 55.000 0.00 0.00 0.00 4.20
260 261 1.069378 GGGTTCTGCTTACGTCGTCG 61.069 60.000 0.00 0.00 43.34 5.12
261 262 0.110056 GGTTCTGCTTACGTCGTCGA 60.110 55.000 9.47 0.00 40.62 4.20
262 263 1.467035 GGTTCTGCTTACGTCGTCGAT 60.467 52.381 9.47 0.00 40.62 3.59
263 264 1.578023 GTTCTGCTTACGTCGTCGATG 59.422 52.381 12.90 12.90 40.62 3.84
264 265 1.081094 TCTGCTTACGTCGTCGATGA 58.919 50.000 20.97 2.39 40.62 2.92
265 266 1.181001 CTGCTTACGTCGTCGATGAC 58.819 55.000 24.88 24.88 40.62 3.06
266 267 0.179181 TGCTTACGTCGTCGATGACC 60.179 55.000 27.63 15.87 40.62 4.02
267 268 0.864797 GCTTACGTCGTCGATGACCC 60.865 60.000 27.63 8.49 40.62 4.46
268 269 0.448990 CTTACGTCGTCGATGACCCA 59.551 55.000 27.63 15.26 40.62 4.51
269 270 1.065102 CTTACGTCGTCGATGACCCAT 59.935 52.381 27.63 17.49 40.62 4.00
270 271 0.659427 TACGTCGTCGATGACCCATC 59.341 55.000 27.63 7.10 40.62 3.51
277 278 4.766970 GATGACCCATCGGCTCTG 57.233 61.111 0.00 0.00 31.01 3.35
278 279 1.070445 GATGACCCATCGGCTCTGG 59.930 63.158 0.00 0.00 31.01 3.86
283 284 2.844362 CCATCGGCTCTGGGGCTA 60.844 66.667 0.00 0.00 38.46 3.93
284 285 2.443394 CCATCGGCTCTGGGGCTAA 61.443 63.158 0.00 0.00 38.46 3.09
285 286 1.757306 CATCGGCTCTGGGGCTAAT 59.243 57.895 0.00 0.00 38.46 1.73
286 287 0.604780 CATCGGCTCTGGGGCTAATG 60.605 60.000 0.00 0.00 38.46 1.90
287 288 0.764369 ATCGGCTCTGGGGCTAATGA 60.764 55.000 0.00 0.00 38.46 2.57
288 289 1.070445 CGGCTCTGGGGCTAATGAG 59.930 63.158 0.00 0.00 38.46 2.90
289 290 1.402896 CGGCTCTGGGGCTAATGAGA 61.403 60.000 0.00 0.00 38.46 3.27
290 291 0.396060 GGCTCTGGGGCTAATGAGAG 59.604 60.000 0.00 0.00 37.53 3.20
291 292 1.418334 GCTCTGGGGCTAATGAGAGA 58.582 55.000 0.00 0.00 34.97 3.10
292 293 1.344114 GCTCTGGGGCTAATGAGAGAG 59.656 57.143 0.00 0.00 34.97 3.20
293 294 1.344114 CTCTGGGGCTAATGAGAGAGC 59.656 57.143 0.00 0.00 34.97 4.09
294 295 1.062581 TCTGGGGCTAATGAGAGAGCT 60.063 52.381 0.00 0.00 38.79 4.09
295 296 2.177888 TCTGGGGCTAATGAGAGAGCTA 59.822 50.000 0.00 0.00 38.79 3.32
296 297 3.172339 CTGGGGCTAATGAGAGAGCTAT 58.828 50.000 0.00 0.00 38.79 2.97
297 298 3.169099 TGGGGCTAATGAGAGAGCTATC 58.831 50.000 0.00 0.00 38.79 2.08
298 299 2.165437 GGGGCTAATGAGAGAGCTATCG 59.835 54.545 2.03 0.00 38.79 2.92
299 300 3.085533 GGGCTAATGAGAGAGCTATCGA 58.914 50.000 2.03 0.00 38.79 3.59
300 301 3.119637 GGGCTAATGAGAGAGCTATCGAC 60.120 52.174 2.03 2.33 38.79 4.20
301 302 3.119637 GGCTAATGAGAGAGCTATCGACC 60.120 52.174 2.03 0.00 38.79 4.79
302 303 3.504134 GCTAATGAGAGAGCTATCGACCA 59.496 47.826 2.03 3.32 35.73 4.02
303 304 4.022762 GCTAATGAGAGAGCTATCGACCAA 60.023 45.833 2.03 0.00 35.73 3.67
304 305 5.336372 GCTAATGAGAGAGCTATCGACCAAT 60.336 44.000 2.03 0.00 35.73 3.16
305 306 4.782019 ATGAGAGAGCTATCGACCAATC 57.218 45.455 2.03 0.00 0.00 2.67
306 307 2.887783 TGAGAGAGCTATCGACCAATCC 59.112 50.000 2.03 0.00 0.00 3.01
307 308 2.230266 GAGAGAGCTATCGACCAATCCC 59.770 54.545 2.03 0.00 0.00 3.85
308 309 2.158385 AGAGAGCTATCGACCAATCCCT 60.158 50.000 2.03 0.00 0.00 4.20
309 310 3.074687 AGAGAGCTATCGACCAATCCCTA 59.925 47.826 2.03 0.00 0.00 3.53
310 311 3.158676 AGAGCTATCGACCAATCCCTAC 58.841 50.000 0.00 0.00 0.00 3.18
311 312 1.887198 AGCTATCGACCAATCCCTACG 59.113 52.381 0.00 0.00 0.00 3.51
312 313 1.669211 GCTATCGACCAATCCCTACGC 60.669 57.143 0.00 0.00 0.00 4.42
313 314 0.594602 TATCGACCAATCCCTACGCG 59.405 55.000 3.53 3.53 0.00 6.01
314 315 1.389609 ATCGACCAATCCCTACGCGT 61.390 55.000 19.17 19.17 0.00 6.01
315 316 1.588139 CGACCAATCCCTACGCGTC 60.588 63.158 18.63 0.00 0.00 5.19
316 317 1.514087 GACCAATCCCTACGCGTCA 59.486 57.895 18.63 0.96 0.00 4.35
317 318 0.804933 GACCAATCCCTACGCGTCAC 60.805 60.000 18.63 0.00 0.00 3.67
338 339 1.871080 CCTCTACAAGGCCATAAGCG 58.129 55.000 5.01 0.00 45.17 4.68
339 340 1.139058 CCTCTACAAGGCCATAAGCGT 59.861 52.381 5.01 0.00 45.17 5.07
345 346 3.642938 AGGCCATAAGCGTTGTCAA 57.357 47.368 5.01 0.00 45.17 3.18
346 347 1.904287 AGGCCATAAGCGTTGTCAAA 58.096 45.000 5.01 0.00 45.17 2.69
347 348 2.446435 AGGCCATAAGCGTTGTCAAAT 58.554 42.857 5.01 0.00 45.17 2.32
348 349 3.616219 AGGCCATAAGCGTTGTCAAATA 58.384 40.909 5.01 0.00 45.17 1.40
349 350 4.207165 AGGCCATAAGCGTTGTCAAATAT 58.793 39.130 5.01 0.00 45.17 1.28
350 351 4.275936 AGGCCATAAGCGTTGTCAAATATC 59.724 41.667 5.01 0.00 45.17 1.63
351 352 4.275936 GGCCATAAGCGTTGTCAAATATCT 59.724 41.667 0.00 0.00 45.17 1.98
352 353 5.444122 GCCATAAGCGTTGTCAAATATCTC 58.556 41.667 0.00 0.00 0.00 2.75
353 354 5.560953 GCCATAAGCGTTGTCAAATATCTCC 60.561 44.000 0.00 0.00 0.00 3.71
354 355 5.049405 CCATAAGCGTTGTCAAATATCTCCC 60.049 44.000 0.00 0.00 0.00 4.30
355 356 2.919228 AGCGTTGTCAAATATCTCCCC 58.081 47.619 0.00 0.00 0.00 4.81
356 357 2.238646 AGCGTTGTCAAATATCTCCCCA 59.761 45.455 0.00 0.00 0.00 4.96
357 358 2.354821 GCGTTGTCAAATATCTCCCCAC 59.645 50.000 0.00 0.00 0.00 4.61
358 359 2.943033 CGTTGTCAAATATCTCCCCACC 59.057 50.000 0.00 0.00 0.00 4.61
359 360 3.288092 GTTGTCAAATATCTCCCCACCC 58.712 50.000 0.00 0.00 0.00 4.61
360 361 1.850345 TGTCAAATATCTCCCCACCCC 59.150 52.381 0.00 0.00 0.00 4.95
361 362 1.145119 GTCAAATATCTCCCCACCCCC 59.855 57.143 0.00 0.00 0.00 5.40
380 381 4.253257 CTCGCGTCGCCCCTACTC 62.253 72.222 12.44 0.00 0.00 2.59
381 382 4.790962 TCGCGTCGCCCCTACTCT 62.791 66.667 12.44 0.00 0.00 3.24
382 383 4.554363 CGCGTCGCCCCTACTCTG 62.554 72.222 12.44 0.00 0.00 3.35
383 384 4.208686 GCGTCGCCCCTACTCTGG 62.209 72.222 5.75 0.00 0.00 3.86
384 385 4.208686 CGTCGCCCCTACTCTGGC 62.209 72.222 0.00 0.00 44.41 4.85
385 386 2.760385 GTCGCCCCTACTCTGGCT 60.760 66.667 0.00 0.00 45.71 4.75
386 387 1.455217 GTCGCCCCTACTCTGGCTA 60.455 63.158 0.00 0.00 45.71 3.93
387 388 1.455217 TCGCCCCTACTCTGGCTAC 60.455 63.158 0.00 0.00 45.71 3.58
388 389 1.756950 CGCCCCTACTCTGGCTACA 60.757 63.158 0.00 0.00 45.71 2.74
389 390 1.823976 GCCCCTACTCTGGCTACAC 59.176 63.158 0.00 0.00 44.46 2.90
390 391 2.017559 GCCCCTACTCTGGCTACACG 62.018 65.000 0.00 0.00 44.46 4.49
391 392 1.392710 CCCCTACTCTGGCTACACGG 61.393 65.000 0.00 0.00 0.00 4.94
392 393 1.392710 CCCTACTCTGGCTACACGGG 61.393 65.000 0.00 0.00 0.00 5.28
393 394 1.392710 CCTACTCTGGCTACACGGGG 61.393 65.000 0.00 0.00 0.00 5.73
394 395 1.380785 TACTCTGGCTACACGGGGG 60.381 63.158 0.00 0.00 0.00 5.40
395 396 4.162690 CTCTGGCTACACGGGGGC 62.163 72.222 0.00 0.00 0.00 5.80
437 438 4.414956 TCCCTCCCTCGCACCCAT 62.415 66.667 0.00 0.00 0.00 4.00
438 439 3.866582 CCCTCCCTCGCACCCATC 61.867 72.222 0.00 0.00 0.00 3.51
439 440 3.866582 CCTCCCTCGCACCCATCC 61.867 72.222 0.00 0.00 0.00 3.51
440 441 2.765807 CTCCCTCGCACCCATCCT 60.766 66.667 0.00 0.00 0.00 3.24
441 442 2.764128 TCCCTCGCACCCATCCTC 60.764 66.667 0.00 0.00 0.00 3.71
442 443 4.227134 CCCTCGCACCCATCCTCG 62.227 72.222 0.00 0.00 0.00 4.63
443 444 4.899239 CCTCGCACCCATCCTCGC 62.899 72.222 0.00 0.00 0.00 5.03
444 445 4.899239 CTCGCACCCATCCTCGCC 62.899 72.222 0.00 0.00 0.00 5.54
512 513 3.435186 GCAGCGGGGCACTTCTTC 61.435 66.667 0.00 0.00 0.00 2.87
513 514 2.348998 CAGCGGGGCACTTCTTCT 59.651 61.111 0.00 0.00 0.00 2.85
514 515 2.037136 CAGCGGGGCACTTCTTCTG 61.037 63.158 0.00 0.00 0.00 3.02
515 516 3.435186 GCGGGGCACTTCTTCTGC 61.435 66.667 0.00 0.00 0.00 4.26
516 517 2.348998 CGGGGCACTTCTTCTGCT 59.651 61.111 0.00 0.00 34.84 4.24
517 518 1.743252 CGGGGCACTTCTTCTGCTC 60.743 63.158 0.00 0.00 34.84 4.26
518 519 4.310288 GGGCACTTCTTCTGCTCC 57.690 61.111 0.00 0.00 34.84 4.70
519 520 1.376466 GGGCACTTCTTCTGCTCCA 59.624 57.895 0.00 0.00 34.84 3.86
520 521 0.957888 GGGCACTTCTTCTGCTCCAC 60.958 60.000 0.00 0.00 34.84 4.02
521 522 1.294659 GGCACTTCTTCTGCTCCACG 61.295 60.000 0.00 0.00 34.84 4.94
522 523 1.905922 GCACTTCTTCTGCTCCACGC 61.906 60.000 0.00 0.00 39.77 5.34
523 524 1.373497 ACTTCTTCTGCTCCACGCG 60.373 57.895 3.53 3.53 43.27 6.01
524 525 1.373497 CTTCTTCTGCTCCACGCGT 60.373 57.895 5.58 5.58 43.27 6.01
525 526 1.347817 CTTCTTCTGCTCCACGCGTC 61.348 60.000 9.86 0.00 43.27 5.19
526 527 2.765250 TTCTTCTGCTCCACGCGTCC 62.765 60.000 9.86 0.00 43.27 4.79
527 528 3.573772 CTTCTGCTCCACGCGTCCA 62.574 63.158 9.86 3.30 43.27 4.02
528 529 3.858868 TTCTGCTCCACGCGTCCAC 62.859 63.158 9.86 0.00 43.27 4.02
540 541 4.451150 GTCCACCGCATCGCCAGA 62.451 66.667 0.00 0.00 0.00 3.86
541 542 4.147449 TCCACCGCATCGCCAGAG 62.147 66.667 0.00 0.00 0.00 3.35
543 544 4.147449 CACCGCATCGCCAGAGGA 62.147 66.667 0.00 0.00 0.00 3.71
544 545 3.842923 ACCGCATCGCCAGAGGAG 61.843 66.667 0.00 0.00 0.00 3.69
545 546 4.598894 CCGCATCGCCAGAGGAGG 62.599 72.222 0.00 0.00 41.31 4.30
546 547 4.598894 CGCATCGCCAGAGGAGGG 62.599 72.222 0.00 0.00 0.00 4.30
547 548 4.247380 GCATCGCCAGAGGAGGGG 62.247 72.222 0.00 0.00 42.56 4.79
548 549 4.247380 CATCGCCAGAGGAGGGGC 62.247 72.222 0.00 0.00 46.80 5.80
569 570 2.569657 CGGACACGTCGGATTGGA 59.430 61.111 0.00 0.00 34.81 3.53
570 571 1.141019 CGGACACGTCGGATTGGAT 59.859 57.895 0.00 0.00 34.81 3.41
571 572 0.870307 CGGACACGTCGGATTGGATC 60.870 60.000 0.00 0.00 34.81 3.36
572 573 0.870307 GGACACGTCGGATTGGATCG 60.870 60.000 0.00 0.00 0.00 3.69
573 574 0.099968 GACACGTCGGATTGGATCGA 59.900 55.000 0.00 0.00 0.00 3.59
574 575 0.100682 ACACGTCGGATTGGATCGAG 59.899 55.000 0.00 0.00 36.00 4.04
575 576 0.595053 CACGTCGGATTGGATCGAGG 60.595 60.000 0.00 0.00 43.87 4.63
576 577 1.007271 CGTCGGATTGGATCGAGGG 60.007 63.158 0.00 0.00 37.54 4.30
577 578 1.367840 GTCGGATTGGATCGAGGGG 59.632 63.158 0.00 0.00 36.00 4.79
578 579 2.031163 CGGATTGGATCGAGGGGC 59.969 66.667 0.00 0.00 0.00 5.80
579 580 2.432123 GGATTGGATCGAGGGGCC 59.568 66.667 0.00 0.00 0.00 5.80
580 581 2.031163 GATTGGATCGAGGGGCCG 59.969 66.667 0.00 0.00 0.00 6.13
695 701 6.831727 TCATGATTCAAACTTTGCAAACAG 57.168 33.333 8.05 1.65 0.00 3.16
714 720 8.003784 GCAAACAGTAAAAATAGTTGTCAATGC 58.996 33.333 0.00 0.00 0.00 3.56
839 847 3.746940 TGGTTCTTTTAGGGGTTCGAAG 58.253 45.455 0.00 0.00 0.00 3.79
841 849 4.347583 TGGTTCTTTTAGGGGTTCGAAGTA 59.652 41.667 0.00 0.00 0.00 2.24
842 850 5.013391 TGGTTCTTTTAGGGGTTCGAAGTAT 59.987 40.000 0.00 0.00 0.00 2.12
843 851 6.213195 TGGTTCTTTTAGGGGTTCGAAGTATA 59.787 38.462 0.00 0.00 0.00 1.47
846 854 9.002600 GTTCTTTTAGGGGTTCGAAGTATAAAA 57.997 33.333 0.00 7.55 0.00 1.52
847 855 9.571816 TTCTTTTAGGGGTTCGAAGTATAAAAA 57.428 29.630 0.00 3.08 0.00 1.94
888 896 3.505680 TGTTAAATTGTGGGCTGCACTAG 59.494 43.478 2.50 0.00 0.00 2.57
918 926 3.306710 GGACTTGGGCTTTGTTAATTGGG 60.307 47.826 0.00 0.00 0.00 4.12
924 932 4.164221 TGGGCTTTGTTAATTGGGTCAAAA 59.836 37.500 0.00 0.00 31.07 2.44
942 950 5.957220 GTCAAAAAGAATTCCGCACAAAAAC 59.043 36.000 0.65 0.00 0.00 2.43
978 987 3.458163 GGGATCGGTGAGGACGCA 61.458 66.667 0.00 0.00 0.00 5.24
979 988 2.202756 GGATCGGTGAGGACGCAC 60.203 66.667 0.00 0.00 38.05 5.34
980 989 2.711922 GGATCGGTGAGGACGCACT 61.712 63.158 6.17 0.00 38.78 4.40
981 990 1.215647 GATCGGTGAGGACGCACTT 59.784 57.895 6.17 0.00 38.78 3.16
983 992 0.389948 ATCGGTGAGGACGCACTTTC 60.390 55.000 6.17 0.00 38.78 2.62
1055 1070 4.241999 GCCGCCGCATGTAGCTTG 62.242 66.667 0.00 0.00 42.61 4.01
1058 1073 3.133464 GCCGCATGTAGCTTGCCA 61.133 61.111 3.34 0.00 42.61 4.92
1060 1075 2.400798 CGCATGTAGCTTGCCACG 59.599 61.111 3.34 0.00 42.61 4.94
1086 1101 1.077285 TCCACGAGATGCCGACCTA 60.077 57.895 0.00 0.00 0.00 3.08
1108 1123 3.311110 GCGCCCTCCCCGATGATA 61.311 66.667 0.00 0.00 0.00 2.15
1247 1262 3.202706 GCCCGCCAAGGTCGAATC 61.203 66.667 0.00 0.00 38.74 2.52
1276 1291 4.445545 GTTTCGCTGCTTCGCCGG 62.446 66.667 0.00 0.00 0.00 6.13
1331 1346 3.280938 ATACAGCCGCCCAAGCCAA 62.281 57.895 0.00 0.00 34.57 4.52
1365 1380 0.889638 CCGCCGCTATAGTCTCTCCA 60.890 60.000 0.84 0.00 0.00 3.86
1402 1417 1.360507 ACTTCCCGGGGTCTAGTAAGT 59.639 52.381 23.50 17.94 0.00 2.24
1408 1423 3.771479 CCCGGGGTCTAGTAAGTTAGTTT 59.229 47.826 14.71 0.00 0.00 2.66
1416 1431 6.368243 GGTCTAGTAAGTTAGTTTTGAGCCAC 59.632 42.308 0.00 0.00 0.00 5.01
1457 1472 0.529773 TGCTTCGACCGCACCATATC 60.530 55.000 4.57 0.00 31.40 1.63
1477 1492 0.463474 GATCAAGCTGGAGACCTGGC 60.463 60.000 0.00 0.00 0.00 4.85
1549 1564 1.035932 CCTCAAAGCCTGCATCCTGG 61.036 60.000 0.00 0.00 0.00 4.45
1557 1572 1.077212 CTGCATCCTGGACCTTGGG 60.077 63.158 0.00 0.00 0.00 4.12
1578 1593 1.298859 CCTTTACGCCACAGTCAGCC 61.299 60.000 0.00 0.00 0.00 4.85
1626 1641 0.240945 CCCTTGACGGCAACATTGTC 59.759 55.000 0.00 0.00 0.00 3.18
1683 1698 2.420022 GCGCAACATCAGTATCACCTTT 59.580 45.455 0.30 0.00 0.00 3.11
1685 1700 3.684305 CGCAACATCAGTATCACCTTTCA 59.316 43.478 0.00 0.00 0.00 2.69
1687 1702 5.575957 GCAACATCAGTATCACCTTTCATG 58.424 41.667 0.00 0.00 0.00 3.07
1698 1713 0.890683 CCTTTCATGGTGTTGAGCCC 59.109 55.000 0.00 0.00 0.00 5.19
1700 1715 0.109532 TTTCATGGTGTTGAGCCCGA 59.890 50.000 0.00 0.00 0.00 5.14
1711 1726 2.235546 GAGCCCGACTCACACAAAC 58.764 57.895 1.05 0.00 45.49 2.93
1713 1728 1.525077 GCCCGACTCACACAAACCA 60.525 57.895 0.00 0.00 0.00 3.67
1719 1734 1.280746 CTCACACAAACCAGCGCTG 59.719 57.895 30.52 30.52 0.00 5.18
1783 1798 0.757188 CCTACTCGGCATCCACCTCT 60.757 60.000 0.00 0.00 0.00 3.69
1893 1908 9.286170 GACACACTATATGACCAGAAGTATAGA 57.714 37.037 0.00 0.00 33.46 1.98
1894 1909 9.290988 ACACACTATATGACCAGAAGTATAGAG 57.709 37.037 0.00 0.00 33.46 2.43
1900 1915 6.567687 ATGACCAGAAGTATAGAGATGTCG 57.432 41.667 0.00 0.00 0.00 4.35
1918 1933 1.152830 GACCTGCCCTGTTTTCCCA 59.847 57.895 0.00 0.00 0.00 4.37
2011 2026 6.222038 AGCTCGACAGTATGATCCTTAAAA 57.778 37.500 0.00 0.00 39.69 1.52
2012 2027 6.640518 AGCTCGACAGTATGATCCTTAAAAA 58.359 36.000 0.00 0.00 39.69 1.94
2053 2068 0.895559 CACCTTGGTTTCCCTCTGCC 60.896 60.000 0.00 0.00 0.00 4.85
2084 2099 3.272031 GCTGAAGGTGAAGGCAGC 58.728 61.111 0.00 0.00 45.64 5.25
2131 2146 1.703438 CTCAACATCGCTGCAGGAGC 61.703 60.000 17.12 3.25 45.20 4.70
2214 2229 5.594926 CAATTGACTATGGATTTTGAGGCC 58.405 41.667 0.00 0.00 0.00 5.19
2303 2318 1.140652 AGGTTTGCCCATTGTGTTTGG 59.859 47.619 0.00 0.00 34.66 3.28
2341 2356 6.054941 CACTCTCTGAGCTTAGATAGACAGA 58.945 44.000 22.70 11.47 36.89 3.41
2346 2361 6.191315 TCTGAGCTTAGATAGACAGAGGTTT 58.809 40.000 3.67 0.00 35.49 3.27
2367 2382 1.039068 TCACAAACAACCATGCCCTG 58.961 50.000 0.00 0.00 0.00 4.45
2375 2390 3.238597 ACAACCATGCCCTGTATGTTTT 58.761 40.909 0.00 0.00 0.00 2.43
2385 2400 4.339247 GCCCTGTATGTTTTCATGTATGCT 59.661 41.667 0.00 0.00 41.09 3.79
2398 2413 7.701539 TTCATGTATGCTTTGGTATGTCTTT 57.298 32.000 0.00 0.00 0.00 2.52
2401 2416 5.708948 TGTATGCTTTGGTATGTCTTTTGC 58.291 37.500 0.00 0.00 0.00 3.68
2417 2432 4.588528 TCTTTTGCCCTGCTCAATTTACTT 59.411 37.500 0.00 0.00 0.00 2.24
2425 2440 6.127619 GCCCTGCTCAATTTACTTGATTTACT 60.128 38.462 0.00 0.00 42.87 2.24
2427 2442 7.253422 CCTGCTCAATTTACTTGATTTACTGG 58.747 38.462 0.00 0.00 42.87 4.00
2444 2459 9.869757 GATTTACTGGCTAAATTGGTTTTATGT 57.130 29.630 0.00 0.00 35.51 2.29
2455 2470 6.773976 ATTGGTTTTATGTATGACACCCTG 57.226 37.500 0.00 0.00 0.00 4.45
2461 2476 3.492102 ATGTATGACACCCTGCCATAC 57.508 47.619 0.00 0.00 41.60 2.39
2463 2478 2.170397 TGTATGACACCCTGCCATACTG 59.830 50.000 9.28 0.00 41.71 2.74
2481 2496 1.470098 CTGTTTTGCAGGATTCCTCGG 59.530 52.381 0.98 0.00 41.42 4.63
2483 2498 0.323360 TTTTGCAGGATTCCTCGGGG 60.323 55.000 0.98 0.00 0.00 5.73
2520 2535 6.349694 GGACTTTGCCCAAGAAATAGAGAAAG 60.350 42.308 0.00 0.00 36.21 2.62
2542 2557 8.541133 AAAGTTCTGATTACTAACTTCTCTGC 57.459 34.615 0.00 0.00 41.36 4.26
2543 2558 6.635755 AGTTCTGATTACTAACTTCTCTGCC 58.364 40.000 0.00 0.00 29.25 4.85
2547 2562 6.211584 TCTGATTACTAACTTCTCTGCCTTGT 59.788 38.462 0.00 0.00 0.00 3.16
2559 2574 1.555075 CTGCCTTGTACCTAAGCCTCA 59.445 52.381 0.00 0.00 0.00 3.86
2562 2577 2.633488 CCTTGTACCTAAGCCTCAAGC 58.367 52.381 0.00 0.00 44.25 4.01
2566 2581 2.576191 TGTACCTAAGCCTCAAGCCAAT 59.424 45.455 0.00 0.00 45.47 3.16
2567 2582 3.778075 TGTACCTAAGCCTCAAGCCAATA 59.222 43.478 0.00 0.00 45.47 1.90
2593 2608 3.006752 CACATGTATGGGGCAACTTTGTT 59.993 43.478 0.00 0.00 0.00 2.83
2596 2611 1.342819 GTATGGGGCAACTTTGTTGCA 59.657 47.619 28.62 14.55 46.58 4.08
2610 2625 2.766313 TGTTGCATCTCTTTAGCGTGT 58.234 42.857 0.00 0.00 0.00 4.49
2611 2626 3.138304 TGTTGCATCTCTTTAGCGTGTT 58.862 40.909 0.00 0.00 0.00 3.32
2623 2638 0.539986 AGCGTGTTCCGGGTTCATAT 59.460 50.000 0.00 0.00 36.94 1.78
2629 2644 3.508402 GTGTTCCGGGTTCATATTGGTTT 59.492 43.478 0.00 0.00 0.00 3.27
2630 2645 3.508012 TGTTCCGGGTTCATATTGGTTTG 59.492 43.478 0.00 0.00 0.00 2.93
2633 2648 4.408276 TCCGGGTTCATATTGGTTTGAAA 58.592 39.130 0.00 0.00 33.90 2.69
2634 2649 4.833380 TCCGGGTTCATATTGGTTTGAAAA 59.167 37.500 0.00 0.00 33.90 2.29
2635 2650 5.482175 TCCGGGTTCATATTGGTTTGAAAAT 59.518 36.000 0.00 0.00 33.90 1.82
2636 2651 6.663953 TCCGGGTTCATATTGGTTTGAAAATA 59.336 34.615 0.00 0.00 33.90 1.40
2637 2652 7.343316 TCCGGGTTCATATTGGTTTGAAAATAT 59.657 33.333 0.00 0.00 33.90 1.28
2640 2655 9.108284 GGGTTCATATTGGTTTGAAAATATTGG 57.892 33.333 0.00 0.00 33.90 3.16
2659 2674 2.312390 GGAGGTCATCCTACTGAGTCC 58.688 57.143 0.00 0.00 45.24 3.85
2661 2676 1.033574 GGTCATCCTACTGAGTCCGG 58.966 60.000 0.00 0.00 0.00 5.14
2689 2704 3.640029 TCCGAGGTAATCCTTCCATGTAC 59.360 47.826 0.00 0.00 45.24 2.90
2692 2707 5.050490 CGAGGTAATCCTTCCATGTACTTG 58.950 45.833 1.78 1.78 45.24 3.16
2705 2720 8.607441 TTCCATGTACTTGTATATCTTGCATC 57.393 34.615 7.86 0.00 0.00 3.91
2714 2729 9.371136 ACTTGTATATCTTGCATCCATAATACG 57.629 33.333 0.00 0.00 0.00 3.06
2715 2730 8.716646 TTGTATATCTTGCATCCATAATACGG 57.283 34.615 0.00 0.00 0.00 4.02
2716 2731 8.073467 TGTATATCTTGCATCCATAATACGGA 57.927 34.615 0.00 0.00 36.84 4.69
2717 2732 8.197439 TGTATATCTTGCATCCATAATACGGAG 58.803 37.037 0.00 0.00 35.56 4.63
2739 2754 7.360361 GGAGTACCTGTTAAACACAATTTCTG 58.640 38.462 0.00 0.00 33.87 3.02
2741 2756 8.967664 AGTACCTGTTAAACACAATTTCTGTA 57.032 30.769 0.00 0.00 36.10 2.74
2744 2759 6.149633 CCTGTTAAACACAATTTCTGTAGGC 58.850 40.000 0.00 0.00 36.10 3.93
2766 2781 6.000219 GGCAGCCATGAGATAAGATCTTTAA 59.000 40.000 14.36 0.00 40.38 1.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.745464 TTTTTACATAGCAAAAATAACCGACC 57.255 30.769 0.00 0.00 31.65 4.79
23 24 9.267084 ACGCAACATTTTTCCTTTGTATATTTT 57.733 25.926 0.00 0.00 0.00 1.82
24 25 8.825667 ACGCAACATTTTTCCTTTGTATATTT 57.174 26.923 0.00 0.00 0.00 1.40
25 26 7.544217 GGACGCAACATTTTTCCTTTGTATATT 59.456 33.333 0.00 0.00 0.00 1.28
26 27 7.033185 GGACGCAACATTTTTCCTTTGTATAT 58.967 34.615 0.00 0.00 0.00 0.86
27 28 6.383415 GGACGCAACATTTTTCCTTTGTATA 58.617 36.000 0.00 0.00 0.00 1.47
28 29 5.227152 GGACGCAACATTTTTCCTTTGTAT 58.773 37.500 0.00 0.00 0.00 2.29
29 30 4.612943 GGACGCAACATTTTTCCTTTGTA 58.387 39.130 0.00 0.00 0.00 2.41
30 31 3.453424 GGACGCAACATTTTTCCTTTGT 58.547 40.909 0.00 0.00 0.00 2.83
31 32 2.470999 CGGACGCAACATTTTTCCTTTG 59.529 45.455 0.00 0.00 0.00 2.77
32 33 2.738135 CGGACGCAACATTTTTCCTTT 58.262 42.857 0.00 0.00 0.00 3.11
33 34 1.601914 GCGGACGCAACATTTTTCCTT 60.602 47.619 12.31 0.00 41.49 3.36
34 35 0.039527 GCGGACGCAACATTTTTCCT 60.040 50.000 12.31 0.00 41.49 3.36
35 36 0.039527 AGCGGACGCAACATTTTTCC 60.040 50.000 19.48 0.00 44.88 3.13
36 37 1.766069 AAGCGGACGCAACATTTTTC 58.234 45.000 19.48 0.00 44.88 2.29
37 38 2.217429 AAAGCGGACGCAACATTTTT 57.783 40.000 19.48 6.51 44.88 1.94
38 39 2.217429 AAAAGCGGACGCAACATTTT 57.783 40.000 19.48 12.97 44.88 1.82
39 40 2.217429 AAAAAGCGGACGCAACATTT 57.783 40.000 19.48 10.87 44.88 2.32
40 41 3.569250 ATAAAAAGCGGACGCAACATT 57.431 38.095 19.48 10.20 44.88 2.71
41 42 3.569250 AATAAAAAGCGGACGCAACAT 57.431 38.095 19.48 5.03 44.88 2.71
42 43 3.046390 CAAATAAAAAGCGGACGCAACA 58.954 40.909 19.48 0.00 44.88 3.33
43 44 2.407026 CCAAATAAAAAGCGGACGCAAC 59.593 45.455 19.48 0.00 44.88 4.17
44 45 2.034812 ACCAAATAAAAAGCGGACGCAA 59.965 40.909 19.48 0.00 44.88 4.85
45 46 1.609555 ACCAAATAAAAAGCGGACGCA 59.390 42.857 19.48 0.00 44.88 5.24
46 47 1.982913 CACCAAATAAAAAGCGGACGC 59.017 47.619 8.91 8.91 42.33 5.19
47 48 1.982913 GCACCAAATAAAAAGCGGACG 59.017 47.619 0.00 0.00 0.00 4.79
48 49 2.729360 GTGCACCAAATAAAAAGCGGAC 59.271 45.455 5.22 0.00 0.00 4.79
49 50 2.625790 AGTGCACCAAATAAAAAGCGGA 59.374 40.909 14.63 0.00 0.00 5.54
50 51 2.730928 CAGTGCACCAAATAAAAAGCGG 59.269 45.455 14.63 0.00 0.00 5.52
51 52 2.730928 CCAGTGCACCAAATAAAAAGCG 59.269 45.455 14.63 0.00 0.00 4.68
52 53 3.066380 CCCAGTGCACCAAATAAAAAGC 58.934 45.455 14.63 0.00 0.00 3.51
53 54 4.335400 ACCCAGTGCACCAAATAAAAAG 57.665 40.909 14.63 0.00 0.00 2.27
54 55 4.446371 CAACCCAGTGCACCAAATAAAAA 58.554 39.130 14.63 0.00 0.00 1.94
55 56 3.181461 CCAACCCAGTGCACCAAATAAAA 60.181 43.478 14.63 0.00 0.00 1.52
56 57 2.366916 CCAACCCAGTGCACCAAATAAA 59.633 45.455 14.63 0.00 0.00 1.40
57 58 1.967066 CCAACCCAGTGCACCAAATAA 59.033 47.619 14.63 0.00 0.00 1.40
58 59 1.145945 TCCAACCCAGTGCACCAAATA 59.854 47.619 14.63 0.00 0.00 1.40
59 60 0.105760 TCCAACCCAGTGCACCAAAT 60.106 50.000 14.63 0.00 0.00 2.32
60 61 0.105760 ATCCAACCCAGTGCACCAAA 60.106 50.000 14.63 0.00 0.00 3.28
61 62 0.827089 CATCCAACCCAGTGCACCAA 60.827 55.000 14.63 0.00 0.00 3.67
62 63 1.228521 CATCCAACCCAGTGCACCA 60.229 57.895 14.63 0.00 0.00 4.17
63 64 1.978617 CCATCCAACCCAGTGCACC 60.979 63.158 14.63 0.00 0.00 5.01
64 65 2.639327 GCCATCCAACCCAGTGCAC 61.639 63.158 9.40 9.40 0.00 4.57
65 66 2.283101 GCCATCCAACCCAGTGCA 60.283 61.111 0.00 0.00 0.00 4.57
66 67 3.070576 GGCCATCCAACCCAGTGC 61.071 66.667 0.00 0.00 0.00 4.40
67 68 1.679977 CTGGCCATCCAACCCAGTG 60.680 63.158 5.51 0.00 42.91 3.66
68 69 2.765969 CTGGCCATCCAACCCAGT 59.234 61.111 5.51 0.00 42.91 4.00
70 71 1.076549 GAACTGGCCATCCAACCCA 59.923 57.895 5.51 0.00 42.91 4.51
71 72 1.682344 GGAACTGGCCATCCAACCC 60.682 63.158 18.89 5.86 42.91 4.11
72 73 0.681243 GAGGAACTGGCCATCCAACC 60.681 60.000 24.32 15.08 42.91 3.77
73 74 0.329596 AGAGGAACTGGCCATCCAAC 59.670 55.000 24.32 17.61 42.91 3.77
74 75 1.965414 TAGAGGAACTGGCCATCCAA 58.035 50.000 24.32 9.07 42.91 3.53
75 76 1.965414 TTAGAGGAACTGGCCATCCA 58.035 50.000 24.32 4.20 41.55 3.41
76 77 2.239907 ACTTTAGAGGAACTGGCCATCC 59.760 50.000 16.52 16.52 41.55 3.51
77 78 3.636153 ACTTTAGAGGAACTGGCCATC 57.364 47.619 5.51 0.51 41.55 3.51
78 79 3.074538 ACAACTTTAGAGGAACTGGCCAT 59.925 43.478 5.51 0.00 41.55 4.40
79 80 2.441750 ACAACTTTAGAGGAACTGGCCA 59.558 45.455 4.71 4.71 41.55 5.36
80 81 3.075148 GACAACTTTAGAGGAACTGGCC 58.925 50.000 0.00 0.00 41.55 5.36
81 82 3.075148 GGACAACTTTAGAGGAACTGGC 58.925 50.000 0.00 0.00 41.55 4.85
82 83 3.326747 CGGACAACTTTAGAGGAACTGG 58.673 50.000 0.00 0.00 41.55 4.00
83 84 2.737252 GCGGACAACTTTAGAGGAACTG 59.263 50.000 0.00 0.00 41.55 3.16
84 85 7.744822 GTCTGCGGACAACTTTAGAGGAACT 62.745 48.000 21.02 0.00 41.70 3.01
85 86 2.737252 CTGCGGACAACTTTAGAGGAAC 59.263 50.000 0.00 0.00 0.00 3.62
86 87 2.631062 TCTGCGGACAACTTTAGAGGAA 59.369 45.455 0.00 0.00 0.00 3.36
87 88 2.029290 GTCTGCGGACAACTTTAGAGGA 60.029 50.000 21.02 0.00 41.75 3.71
88 89 2.338500 GTCTGCGGACAACTTTAGAGG 58.662 52.381 21.02 0.00 41.75 3.69
105 106 0.249911 GGGCAACTTCAGACGTGTCT 60.250 55.000 0.00 0.00 41.37 3.41
106 107 0.249911 AGGGCAACTTCAGACGTGTC 60.250 55.000 0.00 0.00 0.00 3.67
107 108 1.045407 TAGGGCAACTTCAGACGTGT 58.955 50.000 0.00 0.00 0.00 4.49
108 109 2.069273 CTTAGGGCAACTTCAGACGTG 58.931 52.381 0.00 0.00 0.00 4.49
109 110 1.692519 ACTTAGGGCAACTTCAGACGT 59.307 47.619 0.00 0.00 0.00 4.34
110 111 2.288825 TGACTTAGGGCAACTTCAGACG 60.289 50.000 0.00 0.00 0.00 4.18
111 112 3.402628 TGACTTAGGGCAACTTCAGAC 57.597 47.619 0.00 0.00 0.00 3.51
112 113 3.840666 AGATGACTTAGGGCAACTTCAGA 59.159 43.478 0.00 0.00 0.00 3.27
113 114 4.081198 AGAGATGACTTAGGGCAACTTCAG 60.081 45.833 0.00 0.00 0.00 3.02
114 115 3.840666 AGAGATGACTTAGGGCAACTTCA 59.159 43.478 0.00 0.00 0.00 3.02
115 116 4.161377 AGAGAGATGACTTAGGGCAACTTC 59.839 45.833 0.00 0.00 0.00 3.01
116 117 4.100373 AGAGAGATGACTTAGGGCAACTT 58.900 43.478 0.00 0.00 0.00 2.66
117 118 3.718723 AGAGAGATGACTTAGGGCAACT 58.281 45.455 0.00 0.00 0.00 3.16
118 119 5.303078 TGATAGAGAGATGACTTAGGGCAAC 59.697 44.000 0.00 0.00 0.00 4.17
119 120 5.458595 TGATAGAGAGATGACTTAGGGCAA 58.541 41.667 0.00 0.00 0.00 4.52
120 121 5.066913 TGATAGAGAGATGACTTAGGGCA 57.933 43.478 0.00 0.00 0.00 5.36
121 122 5.048083 CACTGATAGAGAGATGACTTAGGGC 60.048 48.000 0.00 0.00 0.00 5.19
122 123 5.476599 CCACTGATAGAGAGATGACTTAGGG 59.523 48.000 0.00 0.00 0.00 3.53
123 124 6.303054 TCCACTGATAGAGAGATGACTTAGG 58.697 44.000 0.00 0.00 0.00 2.69
124 125 9.685276 ATATCCACTGATAGAGAGATGACTTAG 57.315 37.037 0.00 0.00 36.91 2.18
127 128 9.461312 GTTATATCCACTGATAGAGAGATGACT 57.539 37.037 0.00 0.00 36.91 3.41
128 129 8.682710 GGTTATATCCACTGATAGAGAGATGAC 58.317 40.741 0.00 0.00 36.91 3.06
129 130 7.836685 GGGTTATATCCACTGATAGAGAGATGA 59.163 40.741 2.29 0.00 36.91 2.92
130 131 7.069331 GGGGTTATATCCACTGATAGAGAGATG 59.931 44.444 2.29 0.00 36.91 2.90
131 132 7.129425 GGGGTTATATCCACTGATAGAGAGAT 58.871 42.308 2.29 0.00 36.91 2.75
132 133 6.494952 GGGGTTATATCCACTGATAGAGAGA 58.505 44.000 2.29 0.00 36.91 3.10
133 134 5.358442 CGGGGTTATATCCACTGATAGAGAG 59.642 48.000 0.65 0.00 36.91 3.20
134 135 5.222275 ACGGGGTTATATCCACTGATAGAGA 60.222 44.000 0.65 0.00 36.91 3.10
135 136 5.017490 ACGGGGTTATATCCACTGATAGAG 58.983 45.833 0.65 0.00 36.91 2.43
136 137 5.006896 ACGGGGTTATATCCACTGATAGA 57.993 43.478 0.65 0.00 36.91 1.98
137 138 5.245301 TCAACGGGGTTATATCCACTGATAG 59.755 44.000 0.65 0.00 36.91 2.08
138 139 5.149239 TCAACGGGGTTATATCCACTGATA 58.851 41.667 0.65 0.00 37.84 2.15
139 140 3.971305 TCAACGGGGTTATATCCACTGAT 59.029 43.478 0.65 0.00 34.87 2.90
140 141 3.376636 TCAACGGGGTTATATCCACTGA 58.623 45.455 0.65 0.00 0.00 3.41
141 142 3.728845 CTCAACGGGGTTATATCCACTG 58.271 50.000 0.65 0.00 0.00 3.66
142 143 2.104281 GCTCAACGGGGTTATATCCACT 59.896 50.000 0.65 0.00 0.00 4.00
143 144 2.158871 TGCTCAACGGGGTTATATCCAC 60.159 50.000 2.29 0.00 0.00 4.02
144 145 2.120312 TGCTCAACGGGGTTATATCCA 58.880 47.619 2.29 0.00 0.00 3.41
145 146 2.922740 TGCTCAACGGGGTTATATCC 57.077 50.000 0.00 0.00 0.00 2.59
146 147 2.548480 GCTTGCTCAACGGGGTTATATC 59.452 50.000 0.00 0.00 0.00 1.63
147 148 2.572290 GCTTGCTCAACGGGGTTATAT 58.428 47.619 0.00 0.00 0.00 0.86
148 149 1.407712 GGCTTGCTCAACGGGGTTATA 60.408 52.381 0.00 0.00 0.00 0.98
149 150 0.679960 GGCTTGCTCAACGGGGTTAT 60.680 55.000 0.00 0.00 0.00 1.89
150 151 1.302993 GGCTTGCTCAACGGGGTTA 60.303 57.895 0.00 0.00 0.00 2.85
151 152 2.597510 GGCTTGCTCAACGGGGTT 60.598 61.111 0.00 0.00 0.00 4.11
152 153 3.429372 TTGGCTTGCTCAACGGGGT 62.429 57.895 0.00 0.00 0.00 4.95
153 154 2.597217 TTGGCTTGCTCAACGGGG 60.597 61.111 0.00 0.00 0.00 5.73
154 155 1.580845 CTCTTGGCTTGCTCAACGGG 61.581 60.000 0.00 0.00 0.00 5.28
155 156 1.580845 CCTCTTGGCTTGCTCAACGG 61.581 60.000 0.00 0.00 0.00 4.44
156 157 1.580845 CCCTCTTGGCTTGCTCAACG 61.581 60.000 0.00 0.00 0.00 4.10
157 158 0.250901 TCCCTCTTGGCTTGCTCAAC 60.251 55.000 0.00 0.00 0.00 3.18
158 159 0.700564 ATCCCTCTTGGCTTGCTCAA 59.299 50.000 0.00 0.00 0.00 3.02
159 160 0.700564 AATCCCTCTTGGCTTGCTCA 59.299 50.000 0.00 0.00 0.00 4.26
160 161 1.475682 CAAATCCCTCTTGGCTTGCTC 59.524 52.381 0.00 0.00 0.00 4.26
161 162 1.203100 ACAAATCCCTCTTGGCTTGCT 60.203 47.619 0.00 0.00 32.64 3.91
162 163 1.067354 CACAAATCCCTCTTGGCTTGC 60.067 52.381 0.00 0.00 32.64 4.01
163 164 2.490903 CTCACAAATCCCTCTTGGCTTG 59.509 50.000 0.00 0.00 34.51 4.01
164 165 2.108952 ACTCACAAATCCCTCTTGGCTT 59.891 45.455 0.00 0.00 0.00 4.35
165 166 1.707427 ACTCACAAATCCCTCTTGGCT 59.293 47.619 0.00 0.00 0.00 4.75
166 167 2.206576 ACTCACAAATCCCTCTTGGC 57.793 50.000 0.00 0.00 0.00 4.52
167 168 3.503748 GTCAACTCACAAATCCCTCTTGG 59.496 47.826 0.00 0.00 0.00 3.61
168 169 4.392940 AGTCAACTCACAAATCCCTCTTG 58.607 43.478 0.00 0.00 0.00 3.02
169 170 4.713792 AGTCAACTCACAAATCCCTCTT 57.286 40.909 0.00 0.00 0.00 2.85
170 171 4.505742 GGAAGTCAACTCACAAATCCCTCT 60.506 45.833 0.00 0.00 0.00 3.69
171 172 3.753797 GGAAGTCAACTCACAAATCCCTC 59.246 47.826 0.00 0.00 0.00 4.30
172 173 3.138283 TGGAAGTCAACTCACAAATCCCT 59.862 43.478 0.00 0.00 0.00 4.20
173 174 3.486383 TGGAAGTCAACTCACAAATCCC 58.514 45.455 0.00 0.00 0.00 3.85
174 175 4.389374 TCTGGAAGTCAACTCACAAATCC 58.611 43.478 0.00 0.00 33.76 3.01
175 176 5.106396 CCATCTGGAAGTCAACTCACAAATC 60.106 44.000 0.00 0.00 37.39 2.17
176 177 4.763793 CCATCTGGAAGTCAACTCACAAAT 59.236 41.667 0.00 0.00 37.39 2.32
177 178 4.136796 CCATCTGGAAGTCAACTCACAAA 58.863 43.478 0.00 0.00 37.39 2.83
178 179 3.743521 CCATCTGGAAGTCAACTCACAA 58.256 45.455 0.00 0.00 37.39 3.33
179 180 2.550855 GCCATCTGGAAGTCAACTCACA 60.551 50.000 0.00 0.00 37.39 3.58
180 181 2.079925 GCCATCTGGAAGTCAACTCAC 58.920 52.381 0.00 0.00 37.39 3.51
181 182 1.980765 AGCCATCTGGAAGTCAACTCA 59.019 47.619 0.00 0.00 37.39 3.41
182 183 2.777832 AGCCATCTGGAAGTCAACTC 57.222 50.000 0.00 0.00 37.39 3.01
183 184 3.620966 GCTTAGCCATCTGGAAGTCAACT 60.621 47.826 0.00 0.00 37.39 3.16
184 185 2.680339 GCTTAGCCATCTGGAAGTCAAC 59.320 50.000 0.00 0.00 37.39 3.18
185 186 2.305635 TGCTTAGCCATCTGGAAGTCAA 59.694 45.455 0.29 0.00 37.39 3.18
186 187 1.908619 TGCTTAGCCATCTGGAAGTCA 59.091 47.619 0.29 0.00 37.39 3.41
187 188 2.284190 GTGCTTAGCCATCTGGAAGTC 58.716 52.381 0.29 0.00 37.39 3.01
188 189 1.065126 GGTGCTTAGCCATCTGGAAGT 60.065 52.381 0.29 0.00 37.39 3.01
189 190 1.211457 AGGTGCTTAGCCATCTGGAAG 59.789 52.381 0.29 0.00 37.39 3.46
190 191 1.289160 AGGTGCTTAGCCATCTGGAA 58.711 50.000 0.29 0.00 37.39 3.53
191 192 1.065199 CAAGGTGCTTAGCCATCTGGA 60.065 52.381 0.29 0.00 37.39 3.86
192 193 1.386533 CAAGGTGCTTAGCCATCTGG 58.613 55.000 0.29 0.00 38.53 3.86
193 194 1.340405 ACCAAGGTGCTTAGCCATCTG 60.340 52.381 0.29 0.00 0.00 2.90
194 195 0.995024 ACCAAGGTGCTTAGCCATCT 59.005 50.000 0.29 0.00 0.00 2.90
195 196 2.565841 CTACCAAGGTGCTTAGCCATC 58.434 52.381 0.29 0.00 0.00 3.51
196 197 1.408822 GCTACCAAGGTGCTTAGCCAT 60.409 52.381 0.29 0.00 0.00 4.40
197 198 0.035439 GCTACCAAGGTGCTTAGCCA 60.035 55.000 0.29 0.00 0.00 4.75
198 199 0.748367 GGCTACCAAGGTGCTTAGCC 60.748 60.000 13.41 13.41 42.47 3.93
199 200 1.090052 CGGCTACCAAGGTGCTTAGC 61.090 60.000 1.07 0.00 0.00 3.09
200 201 1.090052 GCGGCTACCAAGGTGCTTAG 61.090 60.000 1.07 0.00 0.00 2.18
201 202 1.078708 GCGGCTACCAAGGTGCTTA 60.079 57.895 1.07 0.00 0.00 3.09
202 203 2.359975 GCGGCTACCAAGGTGCTT 60.360 61.111 1.07 0.00 0.00 3.91
203 204 4.760047 CGCGGCTACCAAGGTGCT 62.760 66.667 0.00 0.00 0.00 4.40
209 210 3.538785 TTCTTGGCGCGGCTACCAA 62.539 57.895 33.23 22.82 43.59 3.67
210 211 2.813226 ATTTCTTGGCGCGGCTACCA 62.813 55.000 33.23 16.84 0.00 3.25
211 212 1.654023 AATTTCTTGGCGCGGCTACC 61.654 55.000 33.23 14.10 0.00 3.18
212 213 0.248094 GAATTTCTTGGCGCGGCTAC 60.248 55.000 33.23 9.27 0.00 3.58
213 214 1.373590 GGAATTTCTTGGCGCGGCTA 61.374 55.000 33.23 25.11 0.00 3.93
214 215 2.700773 GGAATTTCTTGGCGCGGCT 61.701 57.895 33.23 11.54 0.00 5.52
215 216 2.202610 GGAATTTCTTGGCGCGGC 60.203 61.111 27.61 27.61 0.00 6.53
216 217 2.100216 CGGAATTTCTTGGCGCGG 59.900 61.111 8.83 0.00 0.00 6.46
217 218 1.226018 GACGGAATTTCTTGGCGCG 60.226 57.895 0.00 0.00 0.00 6.86
218 219 0.454452 GTGACGGAATTTCTTGGCGC 60.454 55.000 0.00 0.00 0.00 6.53
219 220 0.179225 CGTGACGGAATTTCTTGGCG 60.179 55.000 0.00 0.00 0.00 5.69
220 221 1.153353 TCGTGACGGAATTTCTTGGC 58.847 50.000 4.70 0.00 0.00 4.52
221 222 2.095853 CCATCGTGACGGAATTTCTTGG 59.904 50.000 4.70 0.00 0.00 3.61
222 223 2.095853 CCCATCGTGACGGAATTTCTTG 59.904 50.000 4.70 0.00 0.00 3.02
223 224 2.290071 ACCCATCGTGACGGAATTTCTT 60.290 45.455 4.70 0.00 0.00 2.52
224 225 1.278127 ACCCATCGTGACGGAATTTCT 59.722 47.619 4.70 0.00 0.00 2.52
225 226 1.734163 ACCCATCGTGACGGAATTTC 58.266 50.000 4.70 0.00 0.00 2.17
226 227 2.081462 GAACCCATCGTGACGGAATTT 58.919 47.619 4.70 0.00 0.00 1.82
227 228 1.278127 AGAACCCATCGTGACGGAATT 59.722 47.619 4.70 0.00 0.00 2.17
228 229 0.902531 AGAACCCATCGTGACGGAAT 59.097 50.000 4.70 0.00 0.00 3.01
229 230 0.037697 CAGAACCCATCGTGACGGAA 60.038 55.000 4.70 0.00 0.00 4.30
230 231 1.589630 CAGAACCCATCGTGACGGA 59.410 57.895 4.70 0.00 0.00 4.69
231 232 2.100631 GCAGAACCCATCGTGACGG 61.101 63.158 4.70 0.00 0.00 4.79
232 233 0.670546 AAGCAGAACCCATCGTGACG 60.671 55.000 0.00 0.00 0.00 4.35
233 234 2.000447 GTAAGCAGAACCCATCGTGAC 59.000 52.381 0.00 0.00 0.00 3.67
234 235 1.403647 CGTAAGCAGAACCCATCGTGA 60.404 52.381 0.00 0.00 0.00 4.35
235 236 0.999406 CGTAAGCAGAACCCATCGTG 59.001 55.000 0.00 0.00 0.00 4.35
236 237 0.606604 ACGTAAGCAGAACCCATCGT 59.393 50.000 0.00 0.00 45.62 3.73
237 238 1.278238 GACGTAAGCAGAACCCATCG 58.722 55.000 0.00 0.00 45.62 3.84
238 239 1.278238 CGACGTAAGCAGAACCCATC 58.722 55.000 0.00 0.00 45.62 3.51
239 240 0.606604 ACGACGTAAGCAGAACCCAT 59.393 50.000 0.00 0.00 45.62 4.00
240 241 0.038892 GACGACGTAAGCAGAACCCA 60.039 55.000 0.00 0.00 45.62 4.51
241 242 1.069378 CGACGACGTAAGCAGAACCC 61.069 60.000 0.00 0.00 45.62 4.11
242 243 0.110056 TCGACGACGTAAGCAGAACC 60.110 55.000 0.00 0.00 45.62 3.62
243 244 1.578023 CATCGACGACGTAAGCAGAAC 59.422 52.381 0.00 0.00 45.62 3.01
244 245 1.465777 TCATCGACGACGTAAGCAGAA 59.534 47.619 0.00 0.00 45.62 3.02
245 246 1.081094 TCATCGACGACGTAAGCAGA 58.919 50.000 0.00 0.00 45.62 4.26
246 247 1.181001 GTCATCGACGACGTAAGCAG 58.819 55.000 0.00 0.00 45.62 4.24
247 248 0.179181 GGTCATCGACGACGTAAGCA 60.179 55.000 5.44 0.00 40.69 3.91
248 249 0.864797 GGGTCATCGACGACGTAAGC 60.865 60.000 5.44 3.95 40.69 3.09
249 250 0.448990 TGGGTCATCGACGACGTAAG 59.551 55.000 5.44 0.00 40.69 2.34
250 251 1.064505 GATGGGTCATCGACGACGTAA 59.935 52.381 5.44 0.00 40.69 3.18
251 252 0.659427 GATGGGTCATCGACGACGTA 59.341 55.000 5.44 0.00 40.69 3.57
252 253 1.432251 GATGGGTCATCGACGACGT 59.568 57.895 5.44 0.00 40.69 4.34
253 254 4.303853 GATGGGTCATCGACGACG 57.696 61.111 5.44 0.00 36.73 5.12
266 267 1.772819 ATTAGCCCCAGAGCCGATGG 61.773 60.000 0.00 0.00 37.58 3.51
267 268 0.604780 CATTAGCCCCAGAGCCGATG 60.605 60.000 0.00 0.00 0.00 3.84
268 269 0.764369 TCATTAGCCCCAGAGCCGAT 60.764 55.000 0.00 0.00 0.00 4.18
269 270 1.382557 TCATTAGCCCCAGAGCCGA 60.383 57.895 0.00 0.00 0.00 5.54
270 271 1.070445 CTCATTAGCCCCAGAGCCG 59.930 63.158 0.00 0.00 0.00 5.52
271 272 0.396060 CTCTCATTAGCCCCAGAGCC 59.604 60.000 0.00 0.00 0.00 4.70
272 273 1.344114 CTCTCTCATTAGCCCCAGAGC 59.656 57.143 0.00 0.00 33.65 4.09
273 274 1.344114 GCTCTCTCATTAGCCCCAGAG 59.656 57.143 0.00 0.00 34.75 3.35
274 275 1.062581 AGCTCTCTCATTAGCCCCAGA 60.063 52.381 0.00 0.00 39.64 3.86
275 276 1.422531 AGCTCTCTCATTAGCCCCAG 58.577 55.000 0.00 0.00 39.64 4.45
276 277 2.775490 TAGCTCTCTCATTAGCCCCA 57.225 50.000 0.00 0.00 39.64 4.96
277 278 2.165437 CGATAGCTCTCTCATTAGCCCC 59.835 54.545 0.00 0.00 39.64 5.80
278 279 3.085533 TCGATAGCTCTCTCATTAGCCC 58.914 50.000 0.00 0.00 39.64 5.19
279 280 3.119637 GGTCGATAGCTCTCTCATTAGCC 60.120 52.174 0.00 0.00 39.64 3.93
280 281 3.504134 TGGTCGATAGCTCTCTCATTAGC 59.496 47.826 0.00 0.00 39.08 3.09
281 282 5.697473 TTGGTCGATAGCTCTCTCATTAG 57.303 43.478 0.00 0.00 0.00 1.73
282 283 5.184096 GGATTGGTCGATAGCTCTCTCATTA 59.816 44.000 0.00 0.00 0.00 1.90
283 284 4.021544 GGATTGGTCGATAGCTCTCTCATT 60.022 45.833 0.00 0.00 0.00 2.57
284 285 3.509575 GGATTGGTCGATAGCTCTCTCAT 59.490 47.826 0.00 0.00 0.00 2.90
285 286 2.887783 GGATTGGTCGATAGCTCTCTCA 59.112 50.000 0.00 0.00 0.00 3.27
286 287 2.230266 GGGATTGGTCGATAGCTCTCTC 59.770 54.545 0.00 0.00 0.00 3.20
287 288 2.158385 AGGGATTGGTCGATAGCTCTCT 60.158 50.000 0.00 0.00 0.00 3.10
288 289 2.243810 AGGGATTGGTCGATAGCTCTC 58.756 52.381 0.00 0.00 0.00 3.20
289 290 2.390225 AGGGATTGGTCGATAGCTCT 57.610 50.000 0.00 0.00 0.00 4.09
290 291 2.095161 CGTAGGGATTGGTCGATAGCTC 60.095 54.545 0.00 0.00 0.00 4.09
291 292 1.887198 CGTAGGGATTGGTCGATAGCT 59.113 52.381 0.00 0.00 0.00 3.32
292 293 1.669211 GCGTAGGGATTGGTCGATAGC 60.669 57.143 0.00 0.00 0.00 2.97
293 294 1.401148 CGCGTAGGGATTGGTCGATAG 60.401 57.143 0.00 0.00 46.37 2.08
294 295 0.594602 CGCGTAGGGATTGGTCGATA 59.405 55.000 0.00 0.00 46.37 2.92
295 296 1.362717 CGCGTAGGGATTGGTCGAT 59.637 57.895 0.00 0.00 46.37 3.59
296 297 1.996786 GACGCGTAGGGATTGGTCGA 61.997 60.000 13.97 0.00 46.37 4.20
297 298 1.588139 GACGCGTAGGGATTGGTCG 60.588 63.158 13.97 0.00 46.37 4.79
298 299 0.804933 GTGACGCGTAGGGATTGGTC 60.805 60.000 13.97 0.00 46.37 4.02
299 300 1.217244 GTGACGCGTAGGGATTGGT 59.783 57.895 13.97 0.00 46.37 3.67
300 301 1.876714 CGTGACGCGTAGGGATTGG 60.877 63.158 13.97 0.00 46.37 3.16
301 302 2.514013 GCGTGACGCGTAGGGATTG 61.514 63.158 16.19 0.00 44.55 2.67
302 303 2.202703 GCGTGACGCGTAGGGATT 60.203 61.111 16.19 0.00 44.55 3.01
312 313 4.478195 CCTTGTAGAGGCGTGACG 57.522 61.111 0.00 0.00 39.09 4.35
319 320 6.955102 ACAACGCTTATGGCCTTGTAGAGG 62.955 50.000 3.32 0.00 44.17 3.69
320 321 2.604046 ACGCTTATGGCCTTGTAGAG 57.396 50.000 3.32 4.65 37.74 2.43
321 322 2.027561 ACAACGCTTATGGCCTTGTAGA 60.028 45.455 3.32 0.00 44.17 2.59
322 323 2.351726 GACAACGCTTATGGCCTTGTAG 59.648 50.000 3.32 1.15 45.29 2.74
323 324 2.289756 TGACAACGCTTATGGCCTTGTA 60.290 45.455 3.32 0.00 45.29 2.41
324 325 1.165270 GACAACGCTTATGGCCTTGT 58.835 50.000 3.32 3.79 46.92 3.16
325 326 1.164411 TGACAACGCTTATGGCCTTG 58.836 50.000 3.32 0.00 40.84 3.61
326 327 1.904287 TTGACAACGCTTATGGCCTT 58.096 45.000 3.32 0.00 37.74 4.35
327 328 1.904287 TTTGACAACGCTTATGGCCT 58.096 45.000 3.32 0.00 37.74 5.19
328 329 2.939460 ATTTGACAACGCTTATGGCC 57.061 45.000 0.00 0.00 37.74 5.36
329 330 5.424121 AGATATTTGACAACGCTTATGGC 57.576 39.130 0.00 0.00 37.64 4.40
330 331 5.049405 GGGAGATATTTGACAACGCTTATGG 60.049 44.000 0.00 0.00 0.00 2.74
331 332 5.049405 GGGGAGATATTTGACAACGCTTATG 60.049 44.000 0.00 0.00 0.00 1.90
332 333 5.063880 GGGGAGATATTTGACAACGCTTAT 58.936 41.667 0.00 0.00 0.00 1.73
333 334 4.080807 TGGGGAGATATTTGACAACGCTTA 60.081 41.667 0.00 0.00 0.00 3.09
334 335 3.279434 GGGGAGATATTTGACAACGCTT 58.721 45.455 0.00 0.00 0.00 4.68
335 336 2.238646 TGGGGAGATATTTGACAACGCT 59.761 45.455 0.00 0.00 0.00 5.07
336 337 2.354821 GTGGGGAGATATTTGACAACGC 59.645 50.000 0.00 0.00 0.00 4.84
337 338 2.943033 GGTGGGGAGATATTTGACAACG 59.057 50.000 0.00 0.00 0.00 4.10
338 339 3.288092 GGGTGGGGAGATATTTGACAAC 58.712 50.000 0.00 0.00 0.00 3.32
339 340 2.243736 GGGGTGGGGAGATATTTGACAA 59.756 50.000 0.00 0.00 0.00 3.18
340 341 1.850345 GGGGTGGGGAGATATTTGACA 59.150 52.381 0.00 0.00 0.00 3.58
341 342 1.145119 GGGGGTGGGGAGATATTTGAC 59.855 57.143 0.00 0.00 0.00 3.18
342 343 1.529744 GGGGGTGGGGAGATATTTGA 58.470 55.000 0.00 0.00 0.00 2.69
366 367 4.208686 CCAGAGTAGGGGCGACGC 62.209 72.222 12.43 12.43 45.13 5.19
367 368 4.208686 GCCAGAGTAGGGGCGACG 62.209 72.222 0.00 0.00 40.93 5.12
372 373 1.392710 CCGTGTAGCCAGAGTAGGGG 61.393 65.000 0.00 0.00 0.00 4.79
373 374 1.392710 CCCGTGTAGCCAGAGTAGGG 61.393 65.000 0.00 0.00 0.00 3.53
374 375 1.392710 CCCCGTGTAGCCAGAGTAGG 61.393 65.000 0.00 0.00 0.00 3.18
375 376 1.392710 CCCCCGTGTAGCCAGAGTAG 61.393 65.000 0.00 0.00 0.00 2.57
376 377 1.380785 CCCCCGTGTAGCCAGAGTA 60.381 63.158 0.00 0.00 0.00 2.59
377 378 2.683933 CCCCCGTGTAGCCAGAGT 60.684 66.667 0.00 0.00 0.00 3.24
378 379 4.162690 GCCCCCGTGTAGCCAGAG 62.163 72.222 0.00 0.00 0.00 3.35
420 421 4.414956 ATGGGTGCGAGGGAGGGA 62.415 66.667 0.00 0.00 0.00 4.20
421 422 3.866582 GATGGGTGCGAGGGAGGG 61.867 72.222 0.00 0.00 0.00 4.30
422 423 3.866582 GGATGGGTGCGAGGGAGG 61.867 72.222 0.00 0.00 0.00 4.30
423 424 2.765807 AGGATGGGTGCGAGGGAG 60.766 66.667 0.00 0.00 0.00 4.30
424 425 2.764128 GAGGATGGGTGCGAGGGA 60.764 66.667 0.00 0.00 0.00 4.20
425 426 4.227134 CGAGGATGGGTGCGAGGG 62.227 72.222 0.00 0.00 0.00 4.30
426 427 4.899239 GCGAGGATGGGTGCGAGG 62.899 72.222 0.00 0.00 0.00 4.63
427 428 4.899239 GGCGAGGATGGGTGCGAG 62.899 72.222 0.00 0.00 0.00 5.03
495 496 3.435186 GAAGAAGTGCCCCGCTGC 61.435 66.667 0.00 0.00 0.00 5.25
496 497 2.037136 CAGAAGAAGTGCCCCGCTG 61.037 63.158 0.00 0.00 0.00 5.18
497 498 2.348998 CAGAAGAAGTGCCCCGCT 59.651 61.111 0.00 0.00 0.00 5.52
498 499 3.435186 GCAGAAGAAGTGCCCCGC 61.435 66.667 0.00 0.00 34.67 6.13
499 500 1.743252 GAGCAGAAGAAGTGCCCCG 60.743 63.158 0.00 0.00 42.24 5.73
500 501 1.377856 GGAGCAGAAGAAGTGCCCC 60.378 63.158 0.00 0.00 42.24 5.80
501 502 0.957888 GTGGAGCAGAAGAAGTGCCC 60.958 60.000 0.00 0.00 42.24 5.36
502 503 1.294659 CGTGGAGCAGAAGAAGTGCC 61.295 60.000 0.00 0.00 42.24 5.01
503 504 2.157421 CGTGGAGCAGAAGAAGTGC 58.843 57.895 0.00 0.00 41.54 4.40
523 524 4.451150 TCTGGCGATGCGGTGGAC 62.451 66.667 0.00 0.00 0.00 4.02
524 525 4.147449 CTCTGGCGATGCGGTGGA 62.147 66.667 0.00 0.00 0.00 4.02
526 527 4.147449 TCCTCTGGCGATGCGGTG 62.147 66.667 0.00 0.00 0.00 4.94
527 528 3.842923 CTCCTCTGGCGATGCGGT 61.843 66.667 0.00 0.00 0.00 5.68
528 529 4.598894 CCTCCTCTGGCGATGCGG 62.599 72.222 0.00 0.00 0.00 5.69
529 530 4.598894 CCCTCCTCTGGCGATGCG 62.599 72.222 0.00 0.00 0.00 4.73
530 531 4.247380 CCCCTCCTCTGGCGATGC 62.247 72.222 0.00 0.00 0.00 3.91
531 532 4.247380 GCCCCTCCTCTGGCGATG 62.247 72.222 0.00 0.00 38.00 3.84
548 549 3.332493 AATCCGACGTGTCCGGTCG 62.332 63.158 13.17 8.12 46.53 4.79
549 550 1.804326 CAATCCGACGTGTCCGGTC 60.804 63.158 13.17 0.00 46.53 4.79
550 551 2.260434 CAATCCGACGTGTCCGGT 59.740 61.111 13.17 0.00 46.53 5.28
552 553 0.870307 GATCCAATCCGACGTGTCCG 60.870 60.000 0.00 0.00 40.83 4.79
553 554 0.870307 CGATCCAATCCGACGTGTCC 60.870 60.000 0.00 0.00 0.00 4.02
554 555 0.099968 TCGATCCAATCCGACGTGTC 59.900 55.000 0.00 0.00 0.00 3.67
555 556 0.100682 CTCGATCCAATCCGACGTGT 59.899 55.000 0.00 0.00 0.00 4.49
556 557 0.595053 CCTCGATCCAATCCGACGTG 60.595 60.000 0.00 0.00 0.00 4.49
557 558 1.734137 CCTCGATCCAATCCGACGT 59.266 57.895 0.00 0.00 0.00 4.34
558 559 1.007271 CCCTCGATCCAATCCGACG 60.007 63.158 0.00 0.00 0.00 5.12
559 560 1.367840 CCCCTCGATCCAATCCGAC 59.632 63.158 0.00 0.00 0.00 4.79
560 561 2.507854 GCCCCTCGATCCAATCCGA 61.508 63.158 0.00 0.00 0.00 4.55
561 562 2.031163 GCCCCTCGATCCAATCCG 59.969 66.667 0.00 0.00 0.00 4.18
562 563 2.432123 GGCCCCTCGATCCAATCC 59.568 66.667 0.00 0.00 0.00 3.01
563 564 2.031163 CGGCCCCTCGATCCAATC 59.969 66.667 0.00 0.00 0.00 2.67
564 565 3.560251 CCGGCCCCTCGATCCAAT 61.560 66.667 0.00 0.00 0.00 3.16
568 569 4.918201 CTTGCCGGCCCCTCGATC 62.918 72.222 26.77 0.00 0.00 3.69
578 579 4.697756 TTCGCCACCTCTTGCCGG 62.698 66.667 0.00 0.00 0.00 6.13
579 580 1.791103 TTTTTCGCCACCTCTTGCCG 61.791 55.000 0.00 0.00 0.00 5.69
580 581 2.037871 TTTTTCGCCACCTCTTGCC 58.962 52.632 0.00 0.00 0.00 4.52
614 615 7.437862 TGCTCGAAAATGCTTTTGAAAATTAGT 59.562 29.630 0.00 0.00 35.03 2.24
615 616 7.786114 TGCTCGAAAATGCTTTTGAAAATTAG 58.214 30.769 0.00 0.00 35.03 1.73
617 618 6.601741 TGCTCGAAAATGCTTTTGAAAATT 57.398 29.167 0.00 0.00 35.03 1.82
674 680 8.715191 TTTACTGTTTGCAAAGTTTGAATCAT 57.285 26.923 19.82 0.83 0.00 2.45
679 685 9.646427 ACTATTTTTACTGTTTGCAAAGTTTGA 57.354 25.926 19.82 1.93 0.00 2.69
757 763 2.163509 TCTAAGCTCGAGTGAACAGCT 58.836 47.619 15.13 0.04 45.69 4.24
758 764 2.638556 TCTAAGCTCGAGTGAACAGC 57.361 50.000 15.13 0.00 0.00 4.40
811 819 8.591072 TCGAACCCCTAAAAGAACCATATATAG 58.409 37.037 0.00 0.00 0.00 1.31
820 828 8.552083 TTTATACTTCGAACCCCTAAAAGAAC 57.448 34.615 0.00 0.00 0.00 3.01
846 854 5.252969 ACAGCATCACGCATGATATTTTT 57.747 34.783 0.00 0.00 44.13 1.94
847 855 4.906065 ACAGCATCACGCATGATATTTT 57.094 36.364 0.00 0.00 44.13 1.82
849 857 6.375945 TTTAACAGCATCACGCATGATATT 57.624 33.333 0.00 0.00 44.13 1.28
854 862 4.030865 CACAATTTAACAGCATCACGCATG 59.969 41.667 0.00 0.00 46.13 4.06
859 867 3.056607 AGCCCACAATTTAACAGCATCAC 60.057 43.478 0.00 0.00 0.00 3.06
888 896 1.839424 AAGCCCAAGTCCATAACTGC 58.161 50.000 0.00 0.00 38.58 4.40
891 899 5.715434 TTAACAAAGCCCAAGTCCATAAC 57.285 39.130 0.00 0.00 0.00 1.89
918 926 5.710613 TTTTGTGCGGAATTCTTTTTGAC 57.289 34.783 5.23 0.00 0.00 3.18
924 932 3.492482 CCCAGTTTTTGTGCGGAATTCTT 60.492 43.478 5.23 0.00 0.00 2.52
942 950 1.381872 ATCTCCCGGAGTGACCCAG 60.382 63.158 14.36 0.00 34.64 4.45
1066 1081 2.202756 GTCGGCATCTCGTGGACC 60.203 66.667 0.00 0.00 0.00 4.46
1094 1109 1.490574 GAGGATATCATCGGGGAGGG 58.509 60.000 4.83 0.00 0.00 4.30
1104 1119 1.221523 AGCACCAGGAGGAGGATATCA 59.778 52.381 4.83 0.00 38.69 2.15
1108 1123 1.692042 CCAGCACCAGGAGGAGGAT 60.692 63.158 0.00 0.00 38.69 3.24
1238 1253 4.554363 CGAGCGCCGATTCGACCT 62.554 66.667 10.91 0.25 41.76 3.85
1276 1291 4.131088 GTCGAGGAGGGACACCGC 62.131 72.222 0.00 0.00 46.15 5.68
1278 1293 0.684805 AGATGTCGAGGAGGGACACC 60.685 60.000 0.00 0.00 46.22 4.16
1282 1297 0.397675 ATGCAGATGTCGAGGAGGGA 60.398 55.000 0.00 0.00 0.00 4.20
1320 1335 2.978010 AACGAGTTGGCTTGGGCG 60.978 61.111 0.00 0.00 39.81 6.13
1365 1380 1.394618 AGTCGAAGAATAGCTCCGCT 58.605 50.000 0.00 0.00 40.21 5.52
1402 1417 3.153919 GGTCCATGTGGCTCAAAACTAA 58.846 45.455 0.00 0.00 34.44 2.24
1408 1423 2.359850 GCGGTCCATGTGGCTCAA 60.360 61.111 0.00 0.00 34.44 3.02
1437 1452 0.530650 ATATGGTGCGGTCGAAGCAG 60.531 55.000 15.88 0.00 46.10 4.24
1457 1472 0.179089 CCAGGTCTCCAGCTTGATCG 60.179 60.000 0.00 0.00 0.00 3.69
1549 1564 0.675837 GGCGTAAAGGTCCCAAGGTC 60.676 60.000 0.00 0.00 0.00 3.85
1557 1572 1.429463 CTGACTGTGGCGTAAAGGTC 58.571 55.000 0.00 0.00 0.00 3.85
1618 1633 0.951558 GTGCCAAGGTCGACAATGTT 59.048 50.000 18.91 1.82 0.00 2.71
1626 1641 1.672356 CAGGAAGGTGCCAAGGTCG 60.672 63.158 0.00 0.00 0.00 4.79
1664 1679 5.449588 CCATGAAAGGTGATACTGATGTTGC 60.450 44.000 0.00 0.00 0.00 4.17
1683 1698 1.003839 GTCGGGCTCAACACCATGA 60.004 57.895 0.00 0.00 0.00 3.07
1685 1700 1.296715 GAGTCGGGCTCAACACCAT 59.703 57.895 4.40 0.00 43.58 3.55
1694 1709 1.227853 GGTTTGTGTGAGTCGGGCT 60.228 57.895 0.00 0.00 0.00 5.19
1696 1711 1.507141 GCTGGTTTGTGTGAGTCGGG 61.507 60.000 0.00 0.00 0.00 5.14
1698 1713 1.564622 CGCTGGTTTGTGTGAGTCG 59.435 57.895 0.00 0.00 0.00 4.18
1700 1715 1.153168 AGCGCTGGTTTGTGTGAGT 60.153 52.632 10.39 0.00 0.00 3.41
1719 1734 2.031163 ACAGCTTCGAGTGTGGCC 59.969 61.111 0.00 0.00 0.00 5.36
1758 1773 1.442148 GATGCCGAGTAGGGACACC 59.558 63.158 0.00 0.00 45.60 4.16
1783 1798 1.258676 TCGGTACCATGTGCACTACA 58.741 50.000 19.41 0.00 44.87 2.74
1833 1848 3.296709 GACGAGCTCTTGCGGGGAA 62.297 63.158 12.85 0.00 45.42 3.97
1838 1853 0.387878 AGTGAAGACGAGCTCTTGCG 60.388 55.000 12.85 0.93 45.42 4.85
1893 1908 1.194781 AACAGGGCAGGTCGACATCT 61.195 55.000 18.91 2.85 0.00 2.90
1894 1909 0.321653 AAACAGGGCAGGTCGACATC 60.322 55.000 18.91 5.15 0.00 3.06
1900 1915 0.469144 TTGGGAAAACAGGGCAGGTC 60.469 55.000 0.00 0.00 0.00 3.85
1918 1933 2.898729 ATCTTGATCGAGACGGCATT 57.101 45.000 15.14 0.00 0.00 3.56
2011 2026 4.201950 GCTAAGGTCGTTGATGATGCATTT 60.202 41.667 0.00 0.00 0.00 2.32
2012 2027 3.313526 GCTAAGGTCGTTGATGATGCATT 59.686 43.478 0.00 0.00 0.00 3.56
2023 2038 0.763035 ACCAAGGTGCTAAGGTCGTT 59.237 50.000 0.00 0.00 0.00 3.85
2053 2068 1.236616 TTCAGCACACGAAGGCATGG 61.237 55.000 0.00 0.00 0.00 3.66
2084 2099 5.351458 TCGTGATCTCACATTTGGACATAG 58.649 41.667 10.69 0.00 46.75 2.23
2131 2146 6.401047 TTCCGTATAGTAATCCAGGACAAG 57.599 41.667 0.00 0.00 0.00 3.16
2163 2178 3.148412 CATGGGAGTCACAATGTCAACA 58.852 45.455 0.00 0.00 0.00 3.33
2199 2214 3.358111 TTGTCGGCCTCAAAATCCATA 57.642 42.857 0.00 0.00 0.00 2.74
2214 2229 5.094429 TGAACACATTGATGTCTTTGTCG 57.906 39.130 0.00 0.00 39.39 4.35
2282 2297 2.211806 CAAACACAATGGGCAAACCTG 58.788 47.619 0.00 0.00 41.11 4.00
2303 2318 2.952310 AGAGAGTGAAGGTGCCAAAAAC 59.048 45.455 0.00 0.00 0.00 2.43
2346 2361 0.749649 GGGCATGGTTGTTTGTGACA 59.250 50.000 0.00 0.00 36.19 3.58
2351 2366 2.562298 ACATACAGGGCATGGTTGTTTG 59.438 45.455 3.46 0.05 32.41 2.93
2363 2378 6.455360 AAGCATACATGAAAACATACAGGG 57.545 37.500 0.00 0.00 0.00 4.45
2367 2382 9.236691 CATACCAAAGCATACATGAAAACATAC 57.763 33.333 0.00 0.00 0.00 2.39
2375 2390 7.537715 CAAAAGACATACCAAAGCATACATGA 58.462 34.615 0.00 0.00 0.00 3.07
2385 2400 2.298729 GCAGGGCAAAAGACATACCAAA 59.701 45.455 0.00 0.00 0.00 3.28
2398 2413 3.495331 TCAAGTAAATTGAGCAGGGCAA 58.505 40.909 0.00 0.00 43.09 4.52
2417 2432 9.868277 CATAAAACCAATTTAGCCAGTAAATCA 57.132 29.630 0.00 0.00 39.95 2.57
2425 2440 8.247562 GTGTCATACATAAAACCAATTTAGCCA 58.752 33.333 0.00 0.00 36.94 4.75
2427 2442 7.704899 GGGTGTCATACATAAAACCAATTTAGC 59.295 37.037 0.00 0.00 36.94 3.09
2435 2450 3.380320 GGCAGGGTGTCATACATAAAACC 59.620 47.826 0.00 0.00 0.00 3.27
2444 2459 2.477245 ACAGTATGGCAGGGTGTCATA 58.523 47.619 0.00 0.00 41.52 2.15
2455 2470 3.429410 GGAATCCTGCAAAACAGTATGGC 60.429 47.826 0.00 0.00 45.68 4.40
2461 2476 1.470098 CCGAGGAATCCTGCAAAACAG 59.530 52.381 6.50 0.00 46.77 3.16
2463 2478 0.811281 CCCGAGGAATCCTGCAAAAC 59.189 55.000 6.50 0.00 31.76 2.43
2481 2496 1.196766 AAGTCCAGTTCGGTACCCCC 61.197 60.000 6.25 0.00 35.57 5.40
2483 2498 1.804601 CAAAGTCCAGTTCGGTACCC 58.195 55.000 6.25 0.00 35.57 3.69
2485 2500 1.154197 GGCAAAGTCCAGTTCGGTAC 58.846 55.000 0.00 0.00 35.57 3.34
2486 2501 0.035739 GGGCAAAGTCCAGTTCGGTA 59.964 55.000 0.00 0.00 35.57 4.02
2487 2502 1.228154 GGGCAAAGTCCAGTTCGGT 60.228 57.895 0.00 0.00 35.57 4.69
2488 2503 0.821711 TTGGGCAAAGTCCAGTTCGG 60.822 55.000 0.00 0.00 39.05 4.30
2489 2504 0.593128 CTTGGGCAAAGTCCAGTTCG 59.407 55.000 0.00 0.00 39.05 3.95
2520 2535 6.635755 AGGCAGAGAAGTTAGTAATCAGAAC 58.364 40.000 0.00 0.00 0.00 3.01
2531 2546 5.337330 GCTTAGGTACAAGGCAGAGAAGTTA 60.337 44.000 0.00 0.00 0.00 2.24
2532 2547 4.563786 GCTTAGGTACAAGGCAGAGAAGTT 60.564 45.833 0.00 0.00 0.00 2.66
2542 2557 2.633488 GCTTGAGGCTTAGGTACAAGG 58.367 52.381 11.80 0.00 38.50 3.61
2543 2558 2.027192 TGGCTTGAGGCTTAGGTACAAG 60.027 50.000 6.13 6.93 41.69 3.16
2547 2562 3.391296 CCTATTGGCTTGAGGCTTAGGTA 59.609 47.826 17.85 2.60 39.70 3.08
2562 2577 2.517959 CCCATACATGTGCCCTATTGG 58.482 52.381 9.11 4.13 37.09 3.16
2566 2581 0.990818 TGCCCCATACATGTGCCCTA 60.991 55.000 9.11 0.00 0.00 3.53
2567 2582 1.873178 TTGCCCCATACATGTGCCCT 61.873 55.000 9.11 0.00 0.00 5.19
2574 2589 2.028203 GCAACAAAGTTGCCCCATACAT 60.028 45.455 20.85 0.00 39.38 2.29
2593 2608 2.346803 GGAACACGCTAAAGAGATGCA 58.653 47.619 0.00 0.00 0.00 3.96
2596 2611 1.134788 CCCGGAACACGCTAAAGAGAT 60.135 52.381 0.73 0.00 42.52 2.75
2610 2625 4.035612 TCAAACCAATATGAACCCGGAA 57.964 40.909 0.73 0.00 0.00 4.30
2611 2626 3.722908 TCAAACCAATATGAACCCGGA 57.277 42.857 0.73 0.00 0.00 5.14
2623 2638 6.985653 TGACCTCCAATATTTTCAAACCAA 57.014 33.333 0.00 0.00 0.00 3.67
2640 2655 1.950909 CGGACTCAGTAGGATGACCTC 59.049 57.143 0.00 0.00 46.43 3.85
2661 2676 1.790818 AGGATTACCTCGGACTTCCC 58.209 55.000 0.00 0.00 44.13 3.97
2678 2693 6.992123 TGCAAGATATACAAGTACATGGAAGG 59.008 38.462 2.78 0.00 0.00 3.46
2689 2704 8.820933 CCGTATTATGGATGCAAGATATACAAG 58.179 37.037 0.00 0.00 0.00 3.16
2692 2707 8.198109 ACTCCGTATTATGGATGCAAGATATAC 58.802 37.037 5.09 0.00 31.81 1.47
2700 2715 4.021456 CAGGTACTCCGTATTATGGATGCA 60.021 45.833 5.09 0.00 34.60 3.96
2705 2720 7.223387 GTGTTTAACAGGTACTCCGTATTATGG 59.777 40.741 0.00 0.00 34.60 2.74
2714 2729 7.012989 ACAGAAATTGTGTTTAACAGGTACTCC 59.987 37.037 0.00 0.00 40.74 3.85
2715 2730 7.927048 ACAGAAATTGTGTTTAACAGGTACTC 58.073 34.615 0.00 0.00 40.74 2.59
2716 2731 7.875327 ACAGAAATTGTGTTTAACAGGTACT 57.125 32.000 0.00 0.00 40.74 2.73
2717 2732 8.287503 CCTACAGAAATTGTGTTTAACAGGTAC 58.712 37.037 0.00 0.00 40.74 3.34
2718 2733 7.040961 GCCTACAGAAATTGTGTTTAACAGGTA 60.041 37.037 0.00 0.00 40.74 3.08
2719 2734 6.238925 GCCTACAGAAATTGTGTTTAACAGGT 60.239 38.462 0.00 0.00 40.74 4.00
2720 2735 6.149633 GCCTACAGAAATTGTGTTTAACAGG 58.850 40.000 0.00 3.04 40.74 4.00
2721 2736 6.734137 TGCCTACAGAAATTGTGTTTAACAG 58.266 36.000 0.00 0.00 40.74 3.16
2739 2754 4.222588 AGATCTTATCTCATGGCTGCCTAC 59.777 45.833 21.03 0.00 33.42 3.18
2741 2756 3.249752 AGATCTTATCTCATGGCTGCCT 58.750 45.455 21.03 2.27 33.42 4.75
2744 2759 8.867935 CGTATTAAAGATCTTATCTCATGGCTG 58.132 37.037 8.75 0.00 39.08 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.