Multiple sequence alignment - TraesCS7D01G141400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G141400 chr7D 100.000 3573 0 0 1 3573 90507711 90511283 0.000000e+00 6599.0
1 TraesCS7D01G141400 chr7D 90.323 1891 139 24 875 2741 90748199 90746329 0.000000e+00 2438.0
2 TraesCS7D01G141400 chr7D 84.306 720 52 21 2806 3485 90545051 90544353 0.000000e+00 647.0
3 TraesCS7D01G141400 chr7D 76.351 1184 215 39 1070 2229 90257250 90258392 3.090000e-160 575.0
4 TraesCS7D01G141400 chr7D 90.640 406 30 4 2076 2475 90541914 90542317 1.890000e-147 532.0
5 TraesCS7D01G141400 chr7D 75.810 802 153 23 1072 1836 90522874 90522077 5.640000e-98 368.0
6 TraesCS7D01G141400 chr7D 81.884 276 24 7 2464 2738 90542334 90542584 3.610000e-50 209.0
7 TraesCS7D01G141400 chr7B 89.942 2406 171 35 454 2805 41297058 41299446 0.000000e+00 3037.0
8 TraesCS7D01G141400 chr7B 81.453 647 53 26 2816 3424 41311804 41311187 5.400000e-128 468.0
9 TraesCS7D01G141400 chr7B 91.200 125 6 2 3424 3547 41311129 41311009 7.940000e-37 165.0
10 TraesCS7D01G141400 chr7B 86.184 152 19 2 196 346 467979490 467979340 2.850000e-36 163.0
11 TraesCS7D01G141400 chr7B 97.297 37 1 0 3415 3451 80517156 80517192 2.980000e-06 63.9
12 TraesCS7D01G141400 chr7A 93.261 1929 112 9 634 2557 91684655 91686570 0.000000e+00 2826.0
13 TraesCS7D01G141400 chr7A 90.180 1884 126 27 875 2741 92841190 92839349 0.000000e+00 2399.0
14 TraesCS7D01G141400 chr7A 86.015 808 98 7 1070 1862 91724809 91725616 0.000000e+00 852.0
15 TraesCS7D01G141400 chr7A 77.608 1179 208 34 1070 2229 91624965 91626106 0.000000e+00 664.0
16 TraesCS7D01G141400 chr7A 75.047 1058 206 34 1192 2229 91633117 91634136 4.230000e-119 438.0
17 TraesCS7D01G141400 chr7A 87.097 372 45 1 1858 2229 91741549 91741917 5.520000e-113 418.0
18 TraesCS7D01G141400 chr7A 87.805 164 14 4 2576 2738 91720304 91720462 1.690000e-43 187.0
19 TraesCS7D01G141400 chr7A 80.412 97 16 3 431 526 289604381 289604287 1.780000e-08 71.3
20 TraesCS7D01G141400 chrUn 86.291 1189 136 14 1070 2240 103266637 103265458 0.000000e+00 1267.0
21 TraesCS7D01G141400 chrUn 84.106 453 54 10 1070 1507 312333840 312334289 4.260000e-114 422.0
22 TraesCS7D01G141400 chr6B 86.172 1186 142 9 1070 2240 52440667 52439489 0.000000e+00 1262.0
23 TraesCS7D01G141400 chr1D 89.443 341 28 5 7 345 24630850 24630516 1.190000e-114 424.0
24 TraesCS7D01G141400 chr2D 89.726 146 13 2 203 347 119387207 119387063 6.090000e-43 185.0
25 TraesCS7D01G141400 chr2D 89.781 137 13 1 210 346 313498186 313498051 1.320000e-39 174.0
26 TraesCS7D01G141400 chr2D 87.838 148 16 2 201 347 278463280 278463134 4.740000e-39 172.0
27 TraesCS7D01G141400 chr2D 87.248 149 17 2 201 348 379048852 379048999 6.130000e-38 169.0
28 TraesCS7D01G141400 chr1B 89.116 147 14 2 201 346 82771091 82770946 7.880000e-42 182.0
29 TraesCS7D01G141400 chr1A 87.838 148 16 2 201 347 366106020 366106166 4.740000e-39 172.0
30 TraesCS7D01G141400 chr1A 100.000 34 0 0 2807 2840 300567089 300567056 2.980000e-06 63.9
31 TraesCS7D01G141400 chr5A 85.987 157 17 5 201 354 689663521 689663367 2.850000e-36 163.0
32 TraesCS7D01G141400 chr5B 81.250 96 11 5 361 455 331546400 331546311 1.780000e-08 71.3
33 TraesCS7D01G141400 chr2A 97.500 40 1 0 3418 3457 690732191 690732230 6.400000e-08 69.4
34 TraesCS7D01G141400 chr5D 95.000 40 2 0 3418 3457 443649301 443649262 2.980000e-06 63.9
35 TraesCS7D01G141400 chr3D 100.000 34 0 0 3418 3451 475869932 475869899 2.980000e-06 63.9
36 TraesCS7D01G141400 chr6D 97.143 35 1 0 2806 2840 326533125 326533091 3.850000e-05 60.2
37 TraesCS7D01G141400 chr6A 100.000 29 0 0 3418 3446 19821557 19821529 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G141400 chr7D 90507711 90511283 3572 False 6599.0 6599 100.0000 1 3573 1 chr7D.!!$F2 3572
1 TraesCS7D01G141400 chr7D 90746329 90748199 1870 True 2438.0 2438 90.3230 875 2741 1 chr7D.!!$R3 1866
2 TraesCS7D01G141400 chr7D 90544353 90545051 698 True 647.0 647 84.3060 2806 3485 1 chr7D.!!$R2 679
3 TraesCS7D01G141400 chr7D 90257250 90258392 1142 False 575.0 575 76.3510 1070 2229 1 chr7D.!!$F1 1159
4 TraesCS7D01G141400 chr7D 90541914 90542584 670 False 370.5 532 86.2620 2076 2738 2 chr7D.!!$F3 662
5 TraesCS7D01G141400 chr7D 90522077 90522874 797 True 368.0 368 75.8100 1072 1836 1 chr7D.!!$R1 764
6 TraesCS7D01G141400 chr7B 41297058 41299446 2388 False 3037.0 3037 89.9420 454 2805 1 chr7B.!!$F1 2351
7 TraesCS7D01G141400 chr7B 41311009 41311804 795 True 316.5 468 86.3265 2816 3547 2 chr7B.!!$R2 731
8 TraesCS7D01G141400 chr7A 91684655 91686570 1915 False 2826.0 2826 93.2610 634 2557 1 chr7A.!!$F3 1923
9 TraesCS7D01G141400 chr7A 92839349 92841190 1841 True 2399.0 2399 90.1800 875 2741 1 chr7A.!!$R1 1866
10 TraesCS7D01G141400 chr7A 91724809 91725616 807 False 852.0 852 86.0150 1070 1862 1 chr7A.!!$F5 792
11 TraesCS7D01G141400 chr7A 91624965 91626106 1141 False 664.0 664 77.6080 1070 2229 1 chr7A.!!$F1 1159
12 TraesCS7D01G141400 chr7A 91633117 91634136 1019 False 438.0 438 75.0470 1192 2229 1 chr7A.!!$F2 1037
13 TraesCS7D01G141400 chrUn 103265458 103266637 1179 True 1267.0 1267 86.2910 1070 2240 1 chrUn.!!$R1 1170
14 TraesCS7D01G141400 chr6B 52439489 52440667 1178 True 1262.0 1262 86.1720 1070 2240 1 chr6B.!!$R1 1170

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
527 529 0.036306 AAGAAAGGCGTTCGGACCAT 59.964 50.0 7.51 0.0 41.52 3.55 F
1023 1068 0.105964 CGAGGTCGCAATATTCCCCA 59.894 55.0 0.00 0.0 0.00 4.96 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2194 2330 0.038892 GGTCTCCACGTAAGCGAACA 60.039 55.0 0.0 0.0 45.62 3.18 R
2932 3117 0.746659 GTTCCCTTGCTGCTGTTGTT 59.253 50.0 0.0 0.0 0.00 2.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 3.994729 CAGAGTCTGCGAGTGAGAG 57.005 57.895 7.33 0.00 0.00 3.20
45 46 1.447945 CAGAGTCTGCGAGTGAGAGA 58.552 55.000 7.33 0.00 0.00 3.10
46 47 1.398041 CAGAGTCTGCGAGTGAGAGAG 59.602 57.143 7.33 0.00 0.00 3.20
47 48 1.003118 AGAGTCTGCGAGTGAGAGAGT 59.997 52.381 0.00 0.00 0.00 3.24
48 49 1.130373 GAGTCTGCGAGTGAGAGAGTG 59.870 57.143 0.00 0.00 0.00 3.51
49 50 0.878416 GTCTGCGAGTGAGAGAGTGT 59.122 55.000 0.00 0.00 0.00 3.55
50 51 0.877743 TCTGCGAGTGAGAGAGTGTG 59.122 55.000 0.00 0.00 0.00 3.82
51 52 0.877743 CTGCGAGTGAGAGAGTGTGA 59.122 55.000 0.00 0.00 0.00 3.58
52 53 0.877743 TGCGAGTGAGAGAGTGTGAG 59.122 55.000 0.00 0.00 0.00 3.51
53 54 0.170116 GCGAGTGAGAGAGTGTGAGG 59.830 60.000 0.00 0.00 0.00 3.86
54 55 0.808125 CGAGTGAGAGAGTGTGAGGG 59.192 60.000 0.00 0.00 0.00 4.30
55 56 1.181786 GAGTGAGAGAGTGTGAGGGG 58.818 60.000 0.00 0.00 0.00 4.79
56 57 0.780637 AGTGAGAGAGTGTGAGGGGA 59.219 55.000 0.00 0.00 0.00 4.81
57 58 1.181786 GTGAGAGAGTGTGAGGGGAG 58.818 60.000 0.00 0.00 0.00 4.30
58 59 1.076438 TGAGAGAGTGTGAGGGGAGA 58.924 55.000 0.00 0.00 0.00 3.71
59 60 1.005332 TGAGAGAGTGTGAGGGGAGAG 59.995 57.143 0.00 0.00 0.00 3.20
60 61 1.005450 GAGAGAGTGTGAGGGGAGAGT 59.995 57.143 0.00 0.00 0.00 3.24
61 62 1.181786 GAGAGTGTGAGGGGAGAGTG 58.818 60.000 0.00 0.00 0.00 3.51
62 63 0.780637 AGAGTGTGAGGGGAGAGTGA 59.219 55.000 0.00 0.00 0.00 3.41
63 64 1.181786 GAGTGTGAGGGGAGAGTGAG 58.818 60.000 0.00 0.00 0.00 3.51
64 65 0.252012 AGTGTGAGGGGAGAGTGAGG 60.252 60.000 0.00 0.00 0.00 3.86
65 66 0.251832 GTGTGAGGGGAGAGTGAGGA 60.252 60.000 0.00 0.00 0.00 3.71
66 67 0.712979 TGTGAGGGGAGAGTGAGGAT 59.287 55.000 0.00 0.00 0.00 3.24
67 68 1.118838 GTGAGGGGAGAGTGAGGATG 58.881 60.000 0.00 0.00 0.00 3.51
68 69 0.689080 TGAGGGGAGAGTGAGGATGC 60.689 60.000 0.00 0.00 0.00 3.91
69 70 1.383803 AGGGGAGAGTGAGGATGCC 60.384 63.158 0.00 0.00 0.00 4.40
70 71 2.801631 GGGGAGAGTGAGGATGCCG 61.802 68.421 0.00 0.00 0.00 5.69
71 72 2.107953 GGAGAGTGAGGATGCCGC 59.892 66.667 0.00 0.00 0.00 6.53
72 73 2.279120 GAGAGTGAGGATGCCGCG 60.279 66.667 0.00 0.00 0.00 6.46
73 74 4.521062 AGAGTGAGGATGCCGCGC 62.521 66.667 0.00 0.00 34.12 6.86
86 87 4.084888 CGCGCGGTGGAAAAGGTC 62.085 66.667 24.84 0.00 0.00 3.85
100 101 5.845103 GGAAAAGGTCCTCATAGTAGTAGC 58.155 45.833 0.00 0.00 43.98 3.58
101 102 5.507650 GGAAAAGGTCCTCATAGTAGTAGCG 60.508 48.000 0.00 0.00 43.98 4.26
102 103 2.506444 AGGTCCTCATAGTAGTAGCGC 58.494 52.381 0.00 0.00 0.00 5.92
103 104 1.540707 GGTCCTCATAGTAGTAGCGCC 59.459 57.143 2.29 0.00 0.00 6.53
104 105 1.197264 GTCCTCATAGTAGTAGCGCCG 59.803 57.143 2.29 0.00 0.00 6.46
105 106 0.522180 CCTCATAGTAGTAGCGCCGG 59.478 60.000 2.29 0.00 0.00 6.13
106 107 1.236628 CTCATAGTAGTAGCGCCGGT 58.763 55.000 2.29 0.00 0.00 5.28
107 108 1.607628 CTCATAGTAGTAGCGCCGGTT 59.392 52.381 2.29 0.00 0.00 4.44
108 109 1.335810 TCATAGTAGTAGCGCCGGTTG 59.664 52.381 2.29 0.00 0.00 3.77
109 110 0.672342 ATAGTAGTAGCGCCGGTTGG 59.328 55.000 2.29 0.00 38.77 3.77
119 120 4.639171 CCGGTTGGCAAACACCGC 62.639 66.667 20.88 0.00 40.26 5.68
120 121 3.591835 CGGTTGGCAAACACCGCT 61.592 61.111 16.64 0.00 38.10 5.52
121 122 2.255172 CGGTTGGCAAACACCGCTA 61.255 57.895 16.64 0.00 38.10 4.26
122 123 1.284715 GGTTGGCAAACACCGCTAC 59.715 57.895 11.10 0.00 38.10 3.58
123 124 1.170290 GGTTGGCAAACACCGCTACT 61.170 55.000 11.10 0.00 38.10 2.57
124 125 0.040425 GTTGGCAAACACCGCTACTG 60.040 55.000 0.00 0.00 36.24 2.74
125 126 1.791103 TTGGCAAACACCGCTACTGC 61.791 55.000 0.00 0.00 0.00 4.40
126 127 1.966451 GGCAAACACCGCTACTGCT 60.966 57.895 0.00 0.00 36.97 4.24
127 128 0.672401 GGCAAACACCGCTACTGCTA 60.672 55.000 0.00 0.00 36.97 3.49
128 129 1.153353 GCAAACACCGCTACTGCTAA 58.847 50.000 0.00 0.00 36.97 3.09
129 130 1.128692 GCAAACACCGCTACTGCTAAG 59.871 52.381 0.00 0.00 36.97 2.18
130 131 1.128692 CAAACACCGCTACTGCTAAGC 59.871 52.381 0.00 0.00 36.97 3.09
131 132 0.608640 AACACCGCTACTGCTAAGCT 59.391 50.000 4.44 0.00 37.85 3.74
132 133 0.173708 ACACCGCTACTGCTAAGCTC 59.826 55.000 0.00 0.00 37.85 4.09
133 134 0.528684 CACCGCTACTGCTAAGCTCC 60.529 60.000 0.00 0.00 37.85 4.70
134 135 0.970937 ACCGCTACTGCTAAGCTCCA 60.971 55.000 0.00 0.00 37.85 3.86
135 136 0.390860 CCGCTACTGCTAAGCTCCAT 59.609 55.000 0.00 0.00 37.85 3.41
136 137 1.202580 CCGCTACTGCTAAGCTCCATT 60.203 52.381 0.00 0.00 37.85 3.16
137 138 1.863454 CGCTACTGCTAAGCTCCATTG 59.137 52.381 0.00 0.00 37.85 2.82
138 139 1.601430 GCTACTGCTAAGCTCCATTGC 59.399 52.381 0.00 0.00 37.01 3.56
139 140 2.910199 CTACTGCTAAGCTCCATTGCA 58.090 47.619 0.00 0.00 34.99 4.08
140 141 2.205022 ACTGCTAAGCTCCATTGCAA 57.795 45.000 0.00 0.00 33.07 4.08
141 142 2.731572 ACTGCTAAGCTCCATTGCAAT 58.268 42.857 5.99 5.99 33.07 3.56
142 143 3.889815 ACTGCTAAGCTCCATTGCAATA 58.110 40.909 12.53 0.00 33.07 1.90
143 144 3.881688 ACTGCTAAGCTCCATTGCAATAG 59.118 43.478 12.53 8.26 33.07 1.73
144 145 2.620115 TGCTAAGCTCCATTGCAATAGC 59.380 45.455 21.56 21.56 43.97 2.97
145 146 2.350197 GCTAAGCTCCATTGCAATAGCG 60.350 50.000 22.39 13.19 46.23 4.26
146 147 0.383231 AAGCTCCATTGCAATAGCGC 59.617 50.000 22.39 17.45 46.23 5.92
147 148 1.369689 GCTCCATTGCAATAGCGCG 60.370 57.895 16.33 0.00 46.23 6.86
148 149 2.016961 CTCCATTGCAATAGCGCGT 58.983 52.632 12.53 0.00 46.23 6.01
149 150 0.378257 CTCCATTGCAATAGCGCGTT 59.622 50.000 12.53 3.54 46.23 4.84
150 151 0.808125 TCCATTGCAATAGCGCGTTT 59.192 45.000 12.53 0.00 46.23 3.60
151 152 2.010497 TCCATTGCAATAGCGCGTTTA 58.990 42.857 12.53 0.79 46.23 2.01
152 153 2.108700 CCATTGCAATAGCGCGTTTAC 58.891 47.619 12.53 0.00 46.23 2.01
153 154 1.767405 CATTGCAATAGCGCGTTTACG 59.233 47.619 12.53 0.00 46.23 3.18
154 155 0.791422 TTGCAATAGCGCGTTTACGT 59.209 45.000 8.43 0.00 46.23 3.57
155 156 1.626747 TGCAATAGCGCGTTTACGTA 58.373 45.000 8.43 0.00 46.23 3.57
156 157 1.584761 TGCAATAGCGCGTTTACGTAG 59.415 47.619 8.43 0.42 46.23 3.51
157 158 1.652860 GCAATAGCGCGTTTACGTAGC 60.653 52.381 8.43 13.85 42.19 3.58
158 159 1.071698 CAATAGCGCGTTTACGTAGCC 60.072 52.381 8.43 0.00 42.59 3.93
159 160 0.595825 ATAGCGCGTTTACGTAGCCC 60.596 55.000 8.43 0.00 42.59 5.19
160 161 1.932011 TAGCGCGTTTACGTAGCCCA 61.932 55.000 8.43 6.86 42.59 5.36
161 162 2.795389 GCGCGTTTACGTAGCCCAG 61.795 63.158 8.43 0.00 42.22 4.45
162 163 2.795389 CGCGTTTACGTAGCCCAGC 61.795 63.158 0.00 0.00 42.22 4.85
163 164 2.795389 GCGTTTACGTAGCCCAGCG 61.795 63.158 4.05 0.00 42.22 5.18
164 165 2.795389 CGTTTACGTAGCCCAGCGC 61.795 63.158 0.00 0.00 34.02 5.92
173 174 2.186903 GCCCAGCGCTACTGCTTA 59.813 61.111 10.99 0.00 44.46 3.09
174 175 1.227674 GCCCAGCGCTACTGCTTAT 60.228 57.895 10.99 0.00 44.46 1.73
175 176 0.815615 GCCCAGCGCTACTGCTTATT 60.816 55.000 10.99 0.00 44.46 1.40
176 177 1.668419 CCCAGCGCTACTGCTTATTT 58.332 50.000 10.99 0.00 44.46 1.40
177 178 1.331756 CCCAGCGCTACTGCTTATTTG 59.668 52.381 10.99 0.00 44.46 2.32
178 179 1.331756 CCAGCGCTACTGCTTATTTGG 59.668 52.381 10.99 0.00 44.46 3.28
179 180 2.279741 CAGCGCTACTGCTTATTTGGA 58.720 47.619 10.99 0.00 44.46 3.53
180 181 2.030946 CAGCGCTACTGCTTATTTGGAC 59.969 50.000 10.99 0.00 44.46 4.02
181 182 1.330829 GCGCTACTGCTTATTTGGACC 59.669 52.381 0.00 0.00 36.97 4.46
182 183 1.940613 CGCTACTGCTTATTTGGACCC 59.059 52.381 0.00 0.00 36.97 4.46
183 184 2.679639 CGCTACTGCTTATTTGGACCCA 60.680 50.000 0.00 0.00 36.97 4.51
184 185 2.683362 GCTACTGCTTATTTGGACCCAC 59.317 50.000 0.00 0.00 36.03 4.61
185 186 2.215942 ACTGCTTATTTGGACCCACC 57.784 50.000 0.00 0.00 39.54 4.61
186 187 1.710809 ACTGCTTATTTGGACCCACCT 59.289 47.619 0.00 0.00 39.86 4.00
187 188 2.916934 ACTGCTTATTTGGACCCACCTA 59.083 45.455 0.00 0.00 39.86 3.08
188 189 3.279434 CTGCTTATTTGGACCCACCTAC 58.721 50.000 0.00 0.00 39.86 3.18
189 190 2.916934 TGCTTATTTGGACCCACCTACT 59.083 45.455 0.00 0.00 39.86 2.57
190 191 3.279434 GCTTATTTGGACCCACCTACTG 58.721 50.000 0.00 0.00 39.86 2.74
191 192 3.886123 CTTATTTGGACCCACCTACTGG 58.114 50.000 0.00 0.00 40.26 4.00
192 193 0.331616 ATTTGGACCCACCTACTGGC 59.668 55.000 0.00 0.00 39.01 4.85
193 194 1.063070 TTTGGACCCACCTACTGGCA 61.063 55.000 0.00 0.00 39.01 4.92
194 195 1.063070 TTGGACCCACCTACTGGCAA 61.063 55.000 0.00 0.00 39.01 4.52
195 196 0.844661 TGGACCCACCTACTGGCAAT 60.845 55.000 0.00 0.00 39.01 3.56
196 197 1.209621 GGACCCACCTACTGGCAATA 58.790 55.000 0.00 0.00 39.01 1.90
197 198 1.141053 GGACCCACCTACTGGCAATAG 59.859 57.143 0.00 0.00 39.01 1.73
198 199 0.546598 ACCCACCTACTGGCAATAGC 59.453 55.000 0.00 0.00 39.01 2.97
199 200 0.532862 CCCACCTACTGGCAATAGCG 60.533 60.000 0.00 0.00 43.41 4.26
200 201 0.532862 CCACCTACTGGCAATAGCGG 60.533 60.000 0.00 0.00 43.41 5.52
201 202 0.178068 CACCTACTGGCAATAGCGGT 59.822 55.000 0.00 0.00 43.41 5.68
202 203 1.411246 CACCTACTGGCAATAGCGGTA 59.589 52.381 0.00 0.00 43.41 4.02
203 204 1.687123 ACCTACTGGCAATAGCGGTAG 59.313 52.381 0.00 0.10 42.25 3.18
204 205 1.605712 CCTACTGGCAATAGCGGTAGC 60.606 57.143 0.00 0.00 41.77 3.58
214 215 2.490217 GCGGTAGCGCTCTTCTCA 59.510 61.111 30.48 0.00 0.00 3.27
215 216 1.066587 GCGGTAGCGCTCTTCTCAT 59.933 57.895 30.48 0.00 0.00 2.90
216 217 0.528684 GCGGTAGCGCTCTTCTCATT 60.529 55.000 30.48 0.00 0.00 2.57
217 218 1.927895 CGGTAGCGCTCTTCTCATTT 58.072 50.000 16.34 0.00 0.00 2.32
218 219 1.855360 CGGTAGCGCTCTTCTCATTTC 59.145 52.381 16.34 0.00 0.00 2.17
219 220 2.205911 GGTAGCGCTCTTCTCATTTCC 58.794 52.381 16.34 0.00 0.00 3.13
220 221 2.418746 GGTAGCGCTCTTCTCATTTCCA 60.419 50.000 16.34 0.00 0.00 3.53
221 222 2.021355 AGCGCTCTTCTCATTTCCAG 57.979 50.000 2.64 0.00 0.00 3.86
222 223 1.552337 AGCGCTCTTCTCATTTCCAGA 59.448 47.619 2.64 0.00 0.00 3.86
223 224 1.932511 GCGCTCTTCTCATTTCCAGAG 59.067 52.381 0.00 0.00 36.60 3.35
228 229 5.596836 CTCTTCTCATTTCCAGAGCTACT 57.403 43.478 0.00 0.00 33.15 2.57
229 230 6.707440 CTCTTCTCATTTCCAGAGCTACTA 57.293 41.667 0.00 0.00 33.15 1.82
230 231 6.458232 TCTTCTCATTTCCAGAGCTACTAC 57.542 41.667 0.00 0.00 33.15 2.73
231 232 6.191315 TCTTCTCATTTCCAGAGCTACTACT 58.809 40.000 0.00 0.00 33.15 2.57
232 233 7.347252 TCTTCTCATTTCCAGAGCTACTACTA 58.653 38.462 0.00 0.00 33.15 1.82
233 234 7.834681 TCTTCTCATTTCCAGAGCTACTACTAA 59.165 37.037 0.00 0.00 33.15 2.24
234 235 7.575414 TCTCATTTCCAGAGCTACTACTAAG 57.425 40.000 0.00 0.00 33.15 2.18
235 236 6.547880 TCTCATTTCCAGAGCTACTACTAAGG 59.452 42.308 0.00 0.00 33.15 2.69
236 237 5.069251 TCATTTCCAGAGCTACTACTAAGGC 59.931 44.000 0.00 0.00 0.00 4.35
237 238 2.573369 TCCAGAGCTACTACTAAGGCG 58.427 52.381 0.00 0.00 0.00 5.52
238 239 2.092538 TCCAGAGCTACTACTAAGGCGT 60.093 50.000 0.00 0.00 0.00 5.68
239 240 2.291190 CCAGAGCTACTACTAAGGCGTC 59.709 54.545 0.00 0.00 0.00 5.19
240 241 2.943690 CAGAGCTACTACTAAGGCGTCA 59.056 50.000 0.00 0.00 0.00 4.35
241 242 2.944349 AGAGCTACTACTAAGGCGTCAC 59.056 50.000 0.00 0.00 0.00 3.67
242 243 2.681848 GAGCTACTACTAAGGCGTCACA 59.318 50.000 0.00 0.00 0.00 3.58
243 244 3.288964 AGCTACTACTAAGGCGTCACAT 58.711 45.455 0.00 0.00 0.00 3.21
244 245 3.066900 AGCTACTACTAAGGCGTCACATG 59.933 47.826 0.00 0.00 0.00 3.21
245 246 3.181489 GCTACTACTAAGGCGTCACATGT 60.181 47.826 0.00 0.00 0.00 3.21
246 247 4.036027 GCTACTACTAAGGCGTCACATGTA 59.964 45.833 0.00 0.00 0.00 2.29
247 248 4.634184 ACTACTAAGGCGTCACATGTAG 57.366 45.455 0.00 0.00 34.06 2.74
248 249 2.295253 ACTAAGGCGTCACATGTAGC 57.705 50.000 0.00 4.73 0.00 3.58
249 250 1.200483 CTAAGGCGTCACATGTAGCG 58.800 55.000 14.46 14.46 0.00 4.26
252 253 3.474806 GCGTCACATGTAGCGCTT 58.525 55.556 27.81 0.00 45.48 4.68
253 254 1.345176 GCGTCACATGTAGCGCTTC 59.655 57.895 27.81 12.25 45.48 3.86
254 255 1.999051 CGTCACATGTAGCGCTTCC 59.001 57.895 18.68 7.65 0.00 3.46
255 256 0.735978 CGTCACATGTAGCGCTTCCA 60.736 55.000 18.68 14.13 0.00 3.53
256 257 0.721718 GTCACATGTAGCGCTTCCAC 59.278 55.000 18.68 8.90 0.00 4.02
257 258 0.735978 TCACATGTAGCGCTTCCACG 60.736 55.000 18.68 8.40 0.00 4.94
258 259 1.447838 ACATGTAGCGCTTCCACGG 60.448 57.895 18.68 11.48 0.00 4.94
259 260 1.153647 CATGTAGCGCTTCCACGGA 60.154 57.895 18.68 0.00 0.00 4.69
260 261 1.153628 ATGTAGCGCTTCCACGGAC 60.154 57.895 18.68 6.20 0.00 4.79
261 262 2.508663 GTAGCGCTTCCACGGACC 60.509 66.667 18.68 0.00 0.00 4.46
262 263 2.992689 TAGCGCTTCCACGGACCA 60.993 61.111 18.68 0.00 0.00 4.02
263 264 3.001902 TAGCGCTTCCACGGACCAG 62.002 63.158 18.68 0.00 0.00 4.00
266 267 4.681978 GCTTCCACGGACCAGCGT 62.682 66.667 0.00 0.00 0.00 5.07
267 268 2.030562 CTTCCACGGACCAGCGTT 59.969 61.111 0.00 0.00 0.00 4.84
268 269 2.280524 TTCCACGGACCAGCGTTG 60.281 61.111 0.00 0.00 0.00 4.10
269 270 2.989055 CTTCCACGGACCAGCGTTGT 62.989 60.000 0.00 0.00 0.00 3.32
270 271 2.590575 CCACGGACCAGCGTTGTT 60.591 61.111 0.00 0.00 0.00 2.83
271 272 2.631428 CACGGACCAGCGTTGTTG 59.369 61.111 0.00 0.00 0.00 3.33
272 273 3.276846 ACGGACCAGCGTTGTTGC 61.277 61.111 0.00 0.00 0.00 4.17
274 275 1.666553 CGGACCAGCGTTGTTGCTA 60.667 57.895 0.00 0.00 45.23 3.49
275 276 1.225376 CGGACCAGCGTTGTTGCTAA 61.225 55.000 0.00 0.00 45.23 3.09
276 277 1.165270 GGACCAGCGTTGTTGCTAAT 58.835 50.000 0.00 0.00 45.23 1.73
277 278 1.539827 GGACCAGCGTTGTTGCTAATT 59.460 47.619 0.00 0.00 45.23 1.40
278 279 2.745281 GGACCAGCGTTGTTGCTAATTA 59.255 45.455 0.00 0.00 45.23 1.40
279 280 3.181510 GGACCAGCGTTGTTGCTAATTAG 60.182 47.826 8.20 8.20 45.23 1.73
280 281 2.161609 ACCAGCGTTGTTGCTAATTAGC 59.838 45.455 27.23 27.23 45.23 3.09
297 298 3.406682 GCAGCAGCGCTTGTTATTT 57.593 47.368 7.50 0.00 36.40 1.40
298 299 1.701704 GCAGCAGCGCTTGTTATTTT 58.298 45.000 7.50 0.00 36.40 1.82
299 300 1.650645 GCAGCAGCGCTTGTTATTTTC 59.349 47.619 7.50 0.00 36.40 2.29
300 301 2.253603 CAGCAGCGCTTGTTATTTTCC 58.746 47.619 7.50 0.00 36.40 3.13
301 302 1.885887 AGCAGCGCTTGTTATTTTCCA 59.114 42.857 7.50 0.00 33.89 3.53
302 303 2.095059 AGCAGCGCTTGTTATTTTCCAG 60.095 45.455 7.50 0.00 33.89 3.86
303 304 2.253603 CAGCGCTTGTTATTTTCCAGC 58.746 47.619 7.50 0.00 0.00 4.85
304 305 1.135689 AGCGCTTGTTATTTTCCAGCG 60.136 47.619 2.64 7.48 45.46 5.18
305 306 1.259316 CGCTTGTTATTTTCCAGCGC 58.741 50.000 0.00 0.00 37.48 5.92
306 307 1.135689 CGCTTGTTATTTTCCAGCGCT 60.136 47.619 2.64 2.64 37.48 5.92
307 308 2.095213 CGCTTGTTATTTTCCAGCGCTA 59.905 45.455 10.99 0.00 37.48 4.26
308 309 3.426323 GCTTGTTATTTTCCAGCGCTAC 58.574 45.455 10.99 1.92 0.00 3.58
309 310 3.127030 GCTTGTTATTTTCCAGCGCTACT 59.873 43.478 10.99 0.00 0.00 2.57
310 311 4.331717 GCTTGTTATTTTCCAGCGCTACTA 59.668 41.667 10.99 0.00 0.00 1.82
311 312 5.726963 GCTTGTTATTTTCCAGCGCTACTAC 60.727 44.000 10.99 0.60 0.00 2.73
312 313 5.080969 TGTTATTTTCCAGCGCTACTACT 57.919 39.130 10.99 0.00 0.00 2.57
313 314 4.868171 TGTTATTTTCCAGCGCTACTACTG 59.132 41.667 10.99 0.00 0.00 2.74
314 315 3.887621 ATTTTCCAGCGCTACTACTGA 57.112 42.857 10.99 0.00 35.90 3.41
315 316 3.887621 TTTTCCAGCGCTACTACTGAT 57.112 42.857 10.99 0.00 35.90 2.90
316 317 2.871182 TTCCAGCGCTACTACTGATG 57.129 50.000 10.99 0.00 35.90 3.07
317 318 1.763968 TCCAGCGCTACTACTGATGT 58.236 50.000 10.99 0.00 35.90 3.06
318 319 1.676529 TCCAGCGCTACTACTGATGTC 59.323 52.381 10.99 0.00 35.90 3.06
319 320 1.269309 CCAGCGCTACTACTGATGTCC 60.269 57.143 10.99 0.00 35.90 4.02
320 321 1.678627 CAGCGCTACTACTGATGTCCT 59.321 52.381 10.99 0.00 35.90 3.85
321 322 2.879026 CAGCGCTACTACTGATGTCCTA 59.121 50.000 10.99 0.00 35.90 2.94
322 323 2.879646 AGCGCTACTACTGATGTCCTAC 59.120 50.000 8.99 0.00 0.00 3.18
323 324 2.030981 GCGCTACTACTGATGTCCTACC 60.031 54.545 0.00 0.00 0.00 3.18
324 325 3.478509 CGCTACTACTGATGTCCTACCT 58.521 50.000 0.00 0.00 0.00 3.08
325 326 4.639334 CGCTACTACTGATGTCCTACCTA 58.361 47.826 0.00 0.00 0.00 3.08
326 327 5.247084 CGCTACTACTGATGTCCTACCTAT 58.753 45.833 0.00 0.00 0.00 2.57
327 328 6.404708 CGCTACTACTGATGTCCTACCTATA 58.595 44.000 0.00 0.00 0.00 1.31
328 329 6.877855 CGCTACTACTGATGTCCTACCTATAA 59.122 42.308 0.00 0.00 0.00 0.98
329 330 7.064847 CGCTACTACTGATGTCCTACCTATAAG 59.935 44.444 0.00 0.00 0.00 1.73
330 331 7.148205 GCTACTACTGATGTCCTACCTATAAGC 60.148 44.444 0.00 0.00 0.00 3.09
331 332 6.611785 ACTACTGATGTCCTACCTATAAGCA 58.388 40.000 0.00 0.00 0.00 3.91
332 333 7.242359 ACTACTGATGTCCTACCTATAAGCAT 58.758 38.462 0.00 0.00 0.00 3.79
333 334 7.730784 ACTACTGATGTCCTACCTATAAGCATT 59.269 37.037 0.00 0.00 0.00 3.56
334 335 7.380423 ACTGATGTCCTACCTATAAGCATTT 57.620 36.000 0.00 0.00 0.00 2.32
335 336 7.445945 ACTGATGTCCTACCTATAAGCATTTC 58.554 38.462 0.00 0.00 0.00 2.17
336 337 7.291182 ACTGATGTCCTACCTATAAGCATTTCT 59.709 37.037 0.00 0.00 0.00 2.52
337 338 7.671302 TGATGTCCTACCTATAAGCATTTCTC 58.329 38.462 0.00 0.00 0.00 2.87
338 339 7.510685 TGATGTCCTACCTATAAGCATTTCTCT 59.489 37.037 0.00 0.00 0.00 3.10
339 340 8.958060 ATGTCCTACCTATAAGCATTTCTCTA 57.042 34.615 0.00 0.00 0.00 2.43
340 341 8.410673 TGTCCTACCTATAAGCATTTCTCTAG 57.589 38.462 0.00 0.00 0.00 2.43
341 342 8.005388 TGTCCTACCTATAAGCATTTCTCTAGT 58.995 37.037 0.00 0.00 0.00 2.57
342 343 9.517868 GTCCTACCTATAAGCATTTCTCTAGTA 57.482 37.037 0.00 0.00 0.00 1.82
343 344 9.742144 TCCTACCTATAAGCATTTCTCTAGTAG 57.258 37.037 0.00 0.00 0.00 2.57
344 345 9.523168 CCTACCTATAAGCATTTCTCTAGTAGT 57.477 37.037 0.00 0.00 0.00 2.73
346 347 8.770010 ACCTATAAGCATTTCTCTAGTAGTGT 57.230 34.615 0.00 0.00 0.00 3.55
347 348 8.634444 ACCTATAAGCATTTCTCTAGTAGTGTG 58.366 37.037 0.00 0.00 0.00 3.82
348 349 8.634444 CCTATAAGCATTTCTCTAGTAGTGTGT 58.366 37.037 0.00 0.00 0.00 3.72
349 350 9.457110 CTATAAGCATTTCTCTAGTAGTGTGTG 57.543 37.037 0.00 0.00 0.00 3.82
350 351 5.078411 AGCATTTCTCTAGTAGTGTGTGG 57.922 43.478 0.00 0.00 0.00 4.17
351 352 3.619038 GCATTTCTCTAGTAGTGTGTGGC 59.381 47.826 0.00 0.00 0.00 5.01
352 353 4.820897 CATTTCTCTAGTAGTGTGTGGCA 58.179 43.478 0.00 0.00 0.00 4.92
360 361 2.203015 GTGTGTGGCACTGACGGT 60.203 61.111 19.83 0.00 44.41 4.83
361 362 1.817941 GTGTGTGGCACTGACGGTT 60.818 57.895 19.83 0.00 44.41 4.44
362 363 1.078072 TGTGTGGCACTGACGGTTT 60.078 52.632 19.83 0.00 35.11 3.27
363 364 1.355210 GTGTGGCACTGACGGTTTG 59.645 57.895 19.83 0.00 0.00 2.93
364 365 1.821759 TGTGGCACTGACGGTTTGG 60.822 57.895 19.83 0.00 0.00 3.28
365 366 1.525077 GTGGCACTGACGGTTTGGA 60.525 57.895 11.13 0.00 0.00 3.53
366 367 1.227823 TGGCACTGACGGTTTGGAG 60.228 57.895 0.00 0.00 0.00 3.86
367 368 2.617274 GGCACTGACGGTTTGGAGC 61.617 63.158 0.00 0.00 0.00 4.70
374 375 3.864686 CGGTTTGGAGCGGCGATG 61.865 66.667 12.98 0.00 42.72 3.84
375 376 2.435938 GGTTTGGAGCGGCGATGA 60.436 61.111 12.98 0.00 0.00 2.92
376 377 2.750888 GGTTTGGAGCGGCGATGAC 61.751 63.158 12.98 0.00 0.00 3.06
377 378 2.435938 TTTGGAGCGGCGATGACC 60.436 61.111 12.98 2.74 0.00 4.02
385 386 3.384927 GGCGATGACCGTTTCGAG 58.615 61.111 8.51 0.00 41.15 4.04
386 387 2.695646 GCGATGACCGTTTCGAGC 59.304 61.111 8.51 0.00 41.15 5.03
387 388 2.987593 CGATGACCGTTTCGAGCG 59.012 61.111 4.76 4.76 37.55 5.03
393 394 2.356553 CCGTTTCGAGCGGGAACA 60.357 61.111 18.86 0.00 44.98 3.18
394 395 1.740296 CCGTTTCGAGCGGGAACAT 60.740 57.895 18.86 0.00 44.98 2.71
395 396 1.419922 CGTTTCGAGCGGGAACATG 59.580 57.895 3.92 0.00 0.00 3.21
396 397 1.134694 GTTTCGAGCGGGAACATGC 59.865 57.895 0.00 0.00 0.00 4.06
397 398 2.387445 TTTCGAGCGGGAACATGCG 61.387 57.895 0.00 0.00 36.36 4.73
409 410 4.228097 CATGCGCGGGCGAGAAAG 62.228 66.667 20.22 1.83 44.10 2.62
415 416 4.778143 CGGGCGAGAAAGGGGGTG 62.778 72.222 0.00 0.00 0.00 4.61
416 417 4.426313 GGGCGAGAAAGGGGGTGG 62.426 72.222 0.00 0.00 0.00 4.61
417 418 4.426313 GGCGAGAAAGGGGGTGGG 62.426 72.222 0.00 0.00 0.00 4.61
418 419 4.426313 GCGAGAAAGGGGGTGGGG 62.426 72.222 0.00 0.00 0.00 4.96
419 420 2.933834 CGAGAAAGGGGGTGGGGT 60.934 66.667 0.00 0.00 0.00 4.95
420 421 2.967946 CGAGAAAGGGGGTGGGGTC 61.968 68.421 0.00 0.00 0.00 4.46
421 422 1.541620 GAGAAAGGGGGTGGGGTCT 60.542 63.158 0.00 0.00 0.00 3.85
422 423 1.072143 AGAAAGGGGGTGGGGTCTT 60.072 57.895 0.00 0.00 0.00 3.01
423 424 1.076727 GAAAGGGGGTGGGGTCTTG 59.923 63.158 0.00 0.00 0.00 3.02
424 425 2.441035 GAAAGGGGGTGGGGTCTTGG 62.441 65.000 0.00 0.00 0.00 3.61
427 428 3.979497 GGGGTGGGGTCTTGGGTG 61.979 72.222 0.00 0.00 0.00 4.61
428 429 2.856988 GGGTGGGGTCTTGGGTGA 60.857 66.667 0.00 0.00 0.00 4.02
429 430 2.757077 GGTGGGGTCTTGGGTGAG 59.243 66.667 0.00 0.00 0.00 3.51
430 431 2.034221 GTGGGGTCTTGGGTGAGC 59.966 66.667 0.00 0.00 0.00 4.26
434 435 2.352805 GGTCTTGGGTGAGCCAGG 59.647 66.667 6.44 6.44 36.17 4.45
435 436 2.352805 GTCTTGGGTGAGCCAGGG 59.647 66.667 12.99 6.21 36.17 4.45
436 437 3.650950 TCTTGGGTGAGCCAGGGC 61.651 66.667 12.99 0.97 42.33 5.19
447 448 2.123409 GCCAGGGCTGTCAAAAACA 58.877 52.632 2.30 0.00 38.26 2.83
457 458 1.310904 GTCAAAAACAGGCGTGGGTA 58.689 50.000 11.67 0.00 0.00 3.69
462 463 0.250166 AAACAGGCGTGGGTACTGTC 60.250 55.000 11.67 0.00 44.08 3.51
470 471 3.066814 GGGTACTGTCCGGACGCT 61.067 66.667 28.70 18.31 0.00 5.07
475 476 4.498520 CTGTCCGGACGCTCGCAT 62.499 66.667 28.70 0.00 0.00 4.73
485 486 3.341835 GCTCGCATAGCCGCTTCC 61.342 66.667 0.00 0.00 46.25 3.46
506 507 0.655733 ACGTTTGTCTCTGGTTTGCG 59.344 50.000 0.00 0.00 0.00 4.85
507 508 0.655733 CGTTTGTCTCTGGTTTGCGT 59.344 50.000 0.00 0.00 0.00 5.24
508 509 1.862201 CGTTTGTCTCTGGTTTGCGTA 59.138 47.619 0.00 0.00 0.00 4.42
519 521 1.002142 GGTTTGCGTAAGAAAGGCGTT 60.002 47.619 0.00 0.00 42.00 4.84
527 529 0.036306 AAGAAAGGCGTTCGGACCAT 59.964 50.000 7.51 0.00 41.52 3.55
528 530 0.673644 AGAAAGGCGTTCGGACCATG 60.674 55.000 7.51 0.00 41.52 3.66
529 531 0.953960 GAAAGGCGTTCGGACCATGT 60.954 55.000 0.00 0.00 0.00 3.21
537 539 0.742990 TTCGGACCATGTTGCGGATC 60.743 55.000 4.03 0.00 0.00 3.36
538 540 1.449423 CGGACCATGTTGCGGATCA 60.449 57.895 0.00 0.00 0.00 2.92
545 547 1.335810 CATGTTGCGGATCAATGGAGG 59.664 52.381 0.00 0.00 36.99 4.30
551 553 1.595382 GGATCAATGGAGGACCGCG 60.595 63.158 0.00 0.00 39.42 6.46
563 565 1.129809 GACCGCGTTTGATGACACG 59.870 57.895 4.92 0.00 39.49 4.49
567 569 0.438445 CGCGTTTGATGACACGACAT 59.562 50.000 0.00 0.00 38.76 3.06
568 570 1.783067 CGCGTTTGATGACACGACATG 60.783 52.381 0.00 0.00 38.76 3.21
571 573 3.848191 GCGTTTGATGACACGACATGTTT 60.848 43.478 0.00 0.00 43.56 2.83
580 582 1.155424 ACGACATGTTTGAACCGCGT 61.155 50.000 4.92 0.00 0.00 6.01
583 585 1.729131 CATGTTTGAACCGCGTGGC 60.729 57.895 16.69 0.00 39.70 5.01
596 598 2.261361 GTGGCCCGAACAATTGCC 59.739 61.111 5.05 0.00 44.27 4.52
608 610 1.602323 AATTGCCGGCGGTTTGAGA 60.602 52.632 28.82 7.61 0.00 3.27
612 614 2.342279 CCGGCGGTTTGAGAGTCA 59.658 61.111 19.97 0.00 0.00 3.41
613 615 2.027625 CCGGCGGTTTGAGAGTCAC 61.028 63.158 19.97 0.00 0.00 3.67
633 635 0.469917 CGGTGGAGATGCCCTAACAT 59.530 55.000 0.00 0.00 34.97 2.71
673 675 5.566826 GCAACATACTATTATCCGAGCTCCA 60.567 44.000 8.47 0.00 0.00 3.86
791 793 1.469767 CCGTACTTAACCGTGGCTACC 60.470 57.143 0.00 0.00 0.00 3.18
802 806 2.105729 GGCTACCTACCGCGTTCC 59.894 66.667 4.92 0.00 0.00 3.62
814 818 0.301687 CGCGTTCCATCCGAAATCAG 59.698 55.000 0.00 0.00 30.39 2.90
868 888 8.237267 TCTCTCTCTCTCAAAACAAAAACAAAC 58.763 33.333 0.00 0.00 0.00 2.93
954 978 7.402650 AGGTAGTATAGTATCTGAGGTCGGTAT 59.597 40.741 0.00 0.00 0.00 2.73
958 982 8.770322 AGTATAGTATCTGAGGTCGGTATACAT 58.230 37.037 5.01 0.00 0.00 2.29
1016 1061 3.378911 TTGCATATCGAGGTCGCAATA 57.621 42.857 9.45 0.00 37.64 1.90
1017 1062 3.592898 TGCATATCGAGGTCGCAATAT 57.407 42.857 0.00 0.00 39.60 1.28
1018 1063 3.925379 TGCATATCGAGGTCGCAATATT 58.075 40.909 0.00 0.00 39.60 1.28
1020 1065 3.307242 GCATATCGAGGTCGCAATATTCC 59.693 47.826 0.00 0.00 39.60 3.01
1021 1066 2.457366 ATCGAGGTCGCAATATTCCC 57.543 50.000 0.00 0.00 39.60 3.97
1023 1068 0.105964 CGAGGTCGCAATATTCCCCA 59.894 55.000 0.00 0.00 0.00 4.96
1403 1485 4.572571 GTGGCCAACCCCGTCACA 62.573 66.667 7.24 0.00 33.59 3.58
1817 1944 0.614979 ACCTAGGAGATGTGCACGGT 60.615 55.000 17.98 7.67 0.00 4.83
1841 1968 0.693622 TGGCCATCGTCTTTACCCAA 59.306 50.000 0.00 0.00 0.00 4.12
1865 1992 1.596934 GTCGGCAATGGAGAGGACA 59.403 57.895 0.00 0.00 0.00 4.02
1987 2120 0.320334 TCGAGAACAAAGATGCGGCA 60.320 50.000 4.58 4.58 0.00 5.69
2219 2355 1.404315 GCTTACGTGGAGACCAAGGAG 60.404 57.143 0.00 6.78 37.32 3.69
2229 2365 0.606604 GACCAAGGAGCCGTTGAGTA 59.393 55.000 8.57 0.00 0.00 2.59
2231 2367 0.608640 CCAAGGAGCCGTTGAGTACT 59.391 55.000 0.00 0.00 0.00 2.73
2282 2418 5.585844 ACTTTACATGCAATCATCATCGTCA 59.414 36.000 0.00 0.00 0.00 4.35
2369 2509 1.887707 CCTCGGCCTTGTTATCCGC 60.888 63.158 0.00 0.00 42.65 5.54
2404 2544 6.949352 AGAAAACATATTGGCCAGATGTAG 57.051 37.500 26.91 11.69 33.48 2.74
2440 2584 2.911819 CGGATTGTTTACCGCATGTT 57.088 45.000 0.00 0.00 42.55 2.71
2450 2594 1.082169 CCGCATGTTTCACGTGGTG 60.082 57.895 17.00 4.74 35.71 4.17
2462 2606 3.584834 TCACGTGGTGAGATGTATGTTG 58.415 45.455 17.00 0.00 37.67 3.33
2520 2694 9.076596 GCCATATGTTAGAACTTTTCAATTGAC 57.923 33.333 7.89 0.00 0.00 3.18
2525 2699 9.736023 ATGTTAGAACTTTTCAATTGACTGTTC 57.264 29.630 24.76 24.76 32.73 3.18
2531 2705 9.736023 GAACTTTTCAATTGACTGTTCAGTTAT 57.264 29.630 25.96 2.14 30.86 1.89
2557 2731 6.761714 ACTGTAAATCTCAATCGGTATCAACC 59.238 38.462 0.00 0.00 42.95 3.77
2580 2754 6.127563 ACCGAGTTGTCAAATAAACAAAAGGT 60.128 34.615 0.00 0.00 38.29 3.50
2686 2867 4.592942 AGCCTCATCTATTTTCTTGTGCA 58.407 39.130 0.00 0.00 0.00 4.57
2688 2869 5.477984 AGCCTCATCTATTTTCTTGTGCAAA 59.522 36.000 0.00 0.00 0.00 3.68
2762 2947 3.006940 TCACAACTCGCCATTATGTTCC 58.993 45.455 0.00 0.00 0.00 3.62
2766 2951 4.279671 ACAACTCGCCATTATGTTCCAAAA 59.720 37.500 0.00 0.00 0.00 2.44
2794 2979 9.247861 ACATAAAGCCAGATTGATTAAAAGACT 57.752 29.630 0.00 0.00 0.00 3.24
2828 3013 9.195411 GCAAACATCATCAAAAAGTCTGAAATA 57.805 29.630 0.00 0.00 0.00 1.40
2881 3066 6.978024 TTTAATGCGTGTTGTTTGTATCAC 57.022 33.333 0.00 0.00 0.00 3.06
2891 3076 6.409761 GTGTTGTTTGTATCACGTTGTACTTG 59.590 38.462 8.17 0.00 0.00 3.16
2932 3117 9.567776 TGGAATGTTTCTCTTGACAATACTAAA 57.432 29.630 0.00 0.00 0.00 1.85
3048 3272 4.399004 AGAGAAGAAGAACATGATCGGG 57.601 45.455 0.00 0.00 0.00 5.14
3050 3274 4.467795 AGAGAAGAAGAACATGATCGGGAA 59.532 41.667 0.00 0.00 0.00 3.97
3053 3277 2.171448 AGAAGAACATGATCGGGAAGGG 59.829 50.000 0.00 0.00 0.00 3.95
3075 3299 2.508526 GGAGGAAGCAATCACACTGTT 58.491 47.619 0.00 0.00 0.00 3.16
3099 3323 7.443218 TTGTTTTGTATGTTCACAATCGTTG 57.557 32.000 0.00 0.00 38.18 4.10
3115 3339 1.406069 CGTTGGAATGTCTGAGAGGGG 60.406 57.143 0.00 0.00 0.00 4.79
3118 3342 1.203428 TGGAATGTCTGAGAGGGGGAA 60.203 52.381 0.00 0.00 0.00 3.97
3135 3359 1.856920 GGAATAGGGGTGGGGAATTCA 59.143 52.381 7.93 0.00 0.00 2.57
3159 3383 6.635030 ACCTGAAACTAGAATGAAAACACC 57.365 37.500 0.00 0.00 0.00 4.16
3160 3384 5.535030 ACCTGAAACTAGAATGAAAACACCC 59.465 40.000 0.00 0.00 0.00 4.61
3193 3417 0.394192 TGTGCCAAGTCAGGACTGAG 59.606 55.000 2.15 0.00 41.58 3.35
3208 3432 5.010112 CAGGACTGAGTACAGAAGAAAGACA 59.990 44.000 0.00 0.00 46.03 3.41
3209 3433 5.010213 AGGACTGAGTACAGAAGAAAGACAC 59.990 44.000 0.00 0.00 46.03 3.67
3210 3434 4.861210 ACTGAGTACAGAAGAAAGACACG 58.139 43.478 0.00 0.00 46.03 4.49
3211 3435 4.338682 ACTGAGTACAGAAGAAAGACACGT 59.661 41.667 0.00 0.00 46.03 4.49
3249 3473 6.096564 AGGACTGGAGTAAAATACGACCTAAG 59.903 42.308 0.00 0.00 33.54 2.18
3267 3491 6.238648 ACCTAAGTCGAATTGAAAATCAGGT 58.761 36.000 8.63 8.20 0.00 4.00
3388 3615 5.666474 ATTATAACCCCCGTCCCAAATTA 57.334 39.130 0.00 0.00 0.00 1.40
3396 3623 3.054948 CCCCGTCCCAAATTAGTTGTCTA 60.055 47.826 0.00 0.00 35.23 2.59
3397 3624 4.384868 CCCCGTCCCAAATTAGTTGTCTAT 60.385 45.833 0.00 0.00 35.23 1.98
3560 3847 3.614159 CAGTATGCAGCGCAATATGTT 57.386 42.857 11.47 0.00 43.62 2.71
3561 3848 3.956233 CAGTATGCAGCGCAATATGTTT 58.044 40.909 11.47 0.00 43.62 2.83
3562 3849 3.727227 CAGTATGCAGCGCAATATGTTTG 59.273 43.478 11.47 0.00 43.62 2.93
3563 3850 3.627123 AGTATGCAGCGCAATATGTTTGA 59.373 39.130 11.47 0.00 43.62 2.69
3564 3851 3.720949 ATGCAGCGCAATATGTTTGAT 57.279 38.095 11.47 0.00 43.62 2.57
3565 3852 3.069074 TGCAGCGCAATATGTTTGATC 57.931 42.857 11.47 0.00 34.76 2.92
3566 3853 2.422832 TGCAGCGCAATATGTTTGATCA 59.577 40.909 11.47 0.00 34.76 2.92
3567 3854 3.040795 GCAGCGCAATATGTTTGATCAG 58.959 45.455 11.47 0.00 0.00 2.90
3568 3855 3.242837 GCAGCGCAATATGTTTGATCAGA 60.243 43.478 11.47 0.00 0.00 3.27
3569 3856 4.731483 GCAGCGCAATATGTTTGATCAGAA 60.731 41.667 11.47 0.00 0.00 3.02
3570 3857 4.731961 CAGCGCAATATGTTTGATCAGAAC 59.268 41.667 11.47 11.52 0.00 3.01
3571 3858 3.720818 GCGCAATATGTTTGATCAGAACG 59.279 43.478 0.30 0.00 0.00 3.95
3572 3859 3.720818 CGCAATATGTTTGATCAGAACGC 59.279 43.478 12.83 9.80 0.00 4.84
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 1.398041 CTCTCTCACTCGCAGACTCTG 59.602 57.143 1.21 1.21 34.12 3.35
27 28 1.003118 ACTCTCTCACTCGCAGACTCT 59.997 52.381 0.00 0.00 0.00 3.24
28 29 1.130373 CACTCTCTCACTCGCAGACTC 59.870 57.143 0.00 0.00 0.00 3.36
29 30 1.164411 CACTCTCTCACTCGCAGACT 58.836 55.000 0.00 0.00 0.00 3.24
30 31 0.878416 ACACTCTCTCACTCGCAGAC 59.122 55.000 0.00 0.00 0.00 3.51
31 32 0.877743 CACACTCTCTCACTCGCAGA 59.122 55.000 0.00 0.00 0.00 4.26
32 33 0.877743 TCACACTCTCTCACTCGCAG 59.122 55.000 0.00 0.00 0.00 5.18
33 34 0.877743 CTCACACTCTCTCACTCGCA 59.122 55.000 0.00 0.00 0.00 5.10
34 35 0.170116 CCTCACACTCTCTCACTCGC 59.830 60.000 0.00 0.00 0.00 5.03
35 36 0.808125 CCCTCACACTCTCTCACTCG 59.192 60.000 0.00 0.00 0.00 4.18
36 37 1.181786 CCCCTCACACTCTCTCACTC 58.818 60.000 0.00 0.00 0.00 3.51
37 38 0.780637 TCCCCTCACACTCTCTCACT 59.219 55.000 0.00 0.00 0.00 3.41
38 39 1.181786 CTCCCCTCACACTCTCTCAC 58.818 60.000 0.00 0.00 0.00 3.51
39 40 1.005332 CTCTCCCCTCACACTCTCTCA 59.995 57.143 0.00 0.00 0.00 3.27
40 41 1.005450 ACTCTCCCCTCACACTCTCTC 59.995 57.143 0.00 0.00 0.00 3.20
41 42 1.080638 ACTCTCCCCTCACACTCTCT 58.919 55.000 0.00 0.00 0.00 3.10
42 43 1.181786 CACTCTCCCCTCACACTCTC 58.818 60.000 0.00 0.00 0.00 3.20
43 44 0.780637 TCACTCTCCCCTCACACTCT 59.219 55.000 0.00 0.00 0.00 3.24
44 45 1.181786 CTCACTCTCCCCTCACACTC 58.818 60.000 0.00 0.00 0.00 3.51
45 46 0.252012 CCTCACTCTCCCCTCACACT 60.252 60.000 0.00 0.00 0.00 3.55
46 47 0.251832 TCCTCACTCTCCCCTCACAC 60.252 60.000 0.00 0.00 0.00 3.82
47 48 0.712979 ATCCTCACTCTCCCCTCACA 59.287 55.000 0.00 0.00 0.00 3.58
48 49 1.118838 CATCCTCACTCTCCCCTCAC 58.881 60.000 0.00 0.00 0.00 3.51
49 50 0.689080 GCATCCTCACTCTCCCCTCA 60.689 60.000 0.00 0.00 0.00 3.86
50 51 1.406860 GGCATCCTCACTCTCCCCTC 61.407 65.000 0.00 0.00 0.00 4.30
51 52 1.383803 GGCATCCTCACTCTCCCCT 60.384 63.158 0.00 0.00 0.00 4.79
52 53 2.801631 CGGCATCCTCACTCTCCCC 61.802 68.421 0.00 0.00 0.00 4.81
53 54 2.818132 CGGCATCCTCACTCTCCC 59.182 66.667 0.00 0.00 0.00 4.30
54 55 2.107953 GCGGCATCCTCACTCTCC 59.892 66.667 0.00 0.00 0.00 3.71
55 56 2.279120 CGCGGCATCCTCACTCTC 60.279 66.667 0.00 0.00 0.00 3.20
56 57 4.521062 GCGCGGCATCCTCACTCT 62.521 66.667 8.83 0.00 0.00 3.24
69 70 4.084888 GACCTTTTCCACCGCGCG 62.085 66.667 25.67 25.67 0.00 6.86
70 71 3.733960 GGACCTTTTCCACCGCGC 61.734 66.667 0.00 0.00 45.10 6.86
77 78 5.507650 CGCTACTACTATGAGGACCTTTTCC 60.508 48.000 0.00 0.00 46.33 3.13
78 79 5.521544 CGCTACTACTATGAGGACCTTTTC 58.478 45.833 0.00 0.00 0.00 2.29
79 80 4.202131 GCGCTACTACTATGAGGACCTTTT 60.202 45.833 0.00 0.00 0.00 2.27
80 81 3.318557 GCGCTACTACTATGAGGACCTTT 59.681 47.826 0.00 0.00 0.00 3.11
81 82 2.885894 GCGCTACTACTATGAGGACCTT 59.114 50.000 0.00 0.00 0.00 3.50
82 83 2.506444 GCGCTACTACTATGAGGACCT 58.494 52.381 0.00 0.00 0.00 3.85
83 84 1.540707 GGCGCTACTACTATGAGGACC 59.459 57.143 7.64 0.00 0.00 4.46
84 85 1.197264 CGGCGCTACTACTATGAGGAC 59.803 57.143 7.64 0.00 0.00 3.85
85 86 1.520494 CGGCGCTACTACTATGAGGA 58.480 55.000 7.64 0.00 0.00 3.71
86 87 0.522180 CCGGCGCTACTACTATGAGG 59.478 60.000 7.64 0.00 0.00 3.86
87 88 1.236628 ACCGGCGCTACTACTATGAG 58.763 55.000 7.64 0.00 0.00 2.90
88 89 1.335810 CAACCGGCGCTACTACTATGA 59.664 52.381 7.64 0.00 0.00 2.15
89 90 1.602165 CCAACCGGCGCTACTACTATG 60.602 57.143 7.64 0.00 0.00 2.23
90 91 0.672342 CCAACCGGCGCTACTACTAT 59.328 55.000 7.64 0.00 0.00 2.12
91 92 2.109431 CCAACCGGCGCTACTACTA 58.891 57.895 7.64 0.00 0.00 1.82
92 93 2.890371 CCAACCGGCGCTACTACT 59.110 61.111 7.64 0.00 0.00 2.57
102 103 4.639171 GCGGTGTTTGCCAACCGG 62.639 66.667 15.28 0.00 44.97 5.28
104 105 1.170290 AGTAGCGGTGTTTGCCAACC 61.170 55.000 0.00 0.00 31.02 3.77
105 106 0.040425 CAGTAGCGGTGTTTGCCAAC 60.040 55.000 0.00 0.00 0.00 3.77
106 107 1.791103 GCAGTAGCGGTGTTTGCCAA 61.791 55.000 0.00 0.00 0.00 4.52
107 108 2.258013 GCAGTAGCGGTGTTTGCCA 61.258 57.895 0.00 0.00 0.00 4.92
108 109 2.561373 GCAGTAGCGGTGTTTGCC 59.439 61.111 0.00 0.00 0.00 4.52
118 119 1.601430 GCAATGGAGCTTAGCAGTAGC 59.399 52.381 7.07 0.00 42.56 3.58
119 120 2.910199 TGCAATGGAGCTTAGCAGTAG 58.090 47.619 7.07 0.00 34.99 2.57
120 121 3.348647 TTGCAATGGAGCTTAGCAGTA 57.651 42.857 7.07 0.00 36.47 2.74
121 122 2.205022 TTGCAATGGAGCTTAGCAGT 57.795 45.000 7.07 0.00 36.47 4.40
122 123 3.304525 GCTATTGCAATGGAGCTTAGCAG 60.305 47.826 25.24 10.12 41.87 4.24
123 124 2.620115 GCTATTGCAATGGAGCTTAGCA 59.380 45.455 25.24 0.00 41.87 3.49
124 125 2.350197 CGCTATTGCAATGGAGCTTAGC 60.350 50.000 25.24 19.67 40.40 3.09
125 126 2.350197 GCGCTATTGCAATGGAGCTTAG 60.350 50.000 33.37 18.28 39.06 2.18
126 127 1.603802 GCGCTATTGCAATGGAGCTTA 59.396 47.619 33.37 9.51 39.06 3.09
127 128 0.383231 GCGCTATTGCAATGGAGCTT 59.617 50.000 33.37 7.86 39.06 3.74
128 129 1.779025 CGCGCTATTGCAATGGAGCT 61.779 55.000 35.35 10.97 39.75 4.09
129 130 1.369689 CGCGCTATTGCAATGGAGC 60.370 57.895 31.84 31.84 38.83 4.70
130 131 0.378257 AACGCGCTATTGCAATGGAG 59.622 50.000 25.24 22.37 39.64 3.86
131 132 0.808125 AAACGCGCTATTGCAATGGA 59.192 45.000 25.24 4.31 39.64 3.41
132 133 2.108700 GTAAACGCGCTATTGCAATGG 58.891 47.619 22.27 19.94 39.64 3.16
133 134 1.767405 CGTAAACGCGCTATTGCAATG 59.233 47.619 22.27 12.54 39.64 2.82
134 135 1.395608 ACGTAAACGCGCTATTGCAAT 59.604 42.857 17.56 17.56 44.43 3.56
135 136 0.791422 ACGTAAACGCGCTATTGCAA 59.209 45.000 5.73 0.00 44.43 4.08
136 137 1.584761 CTACGTAAACGCGCTATTGCA 59.415 47.619 5.73 0.00 44.43 4.08
137 138 1.652860 GCTACGTAAACGCGCTATTGC 60.653 52.381 5.73 1.59 44.43 3.56
138 139 1.071698 GGCTACGTAAACGCGCTATTG 60.072 52.381 5.73 0.00 44.43 1.90
139 140 1.203065 GGCTACGTAAACGCGCTATT 58.797 50.000 5.73 1.10 44.43 1.73
140 141 0.595825 GGGCTACGTAAACGCGCTAT 60.596 55.000 5.73 0.00 44.43 2.97
141 142 1.226660 GGGCTACGTAAACGCGCTA 60.227 57.895 5.73 0.00 44.43 4.26
142 143 2.507769 GGGCTACGTAAACGCGCT 60.508 61.111 5.73 0.00 44.43 5.92
143 144 2.795389 CTGGGCTACGTAAACGCGC 61.795 63.158 5.73 13.34 44.43 6.86
144 145 2.795389 GCTGGGCTACGTAAACGCG 61.795 63.158 3.53 3.53 44.43 6.01
145 146 2.795389 CGCTGGGCTACGTAAACGC 61.795 63.158 1.74 1.04 44.43 4.84
146 147 2.795389 GCGCTGGGCTACGTAAACG 61.795 63.158 9.69 0.04 41.45 3.60
147 148 3.087176 GCGCTGGGCTACGTAAAC 58.913 61.111 9.69 0.00 39.11 2.01
163 164 2.683362 GTGGGTCCAAATAAGCAGTAGC 59.317 50.000 0.00 0.00 42.56 3.58
164 165 3.054361 AGGTGGGTCCAAATAAGCAGTAG 60.054 47.826 0.00 0.00 39.02 2.57
165 166 2.916934 AGGTGGGTCCAAATAAGCAGTA 59.083 45.455 0.00 0.00 39.02 2.74
166 167 1.710809 AGGTGGGTCCAAATAAGCAGT 59.289 47.619 0.00 0.00 39.02 4.40
167 168 2.514458 AGGTGGGTCCAAATAAGCAG 57.486 50.000 0.00 0.00 39.02 4.24
168 169 2.916934 AGTAGGTGGGTCCAAATAAGCA 59.083 45.455 0.00 0.00 39.02 3.91
169 170 3.279434 CAGTAGGTGGGTCCAAATAAGC 58.721 50.000 0.00 0.00 39.02 3.09
170 171 3.886123 CCAGTAGGTGGGTCCAAATAAG 58.114 50.000 0.00 0.00 43.63 1.73
182 183 0.178068 ACCGCTATTGCCAGTAGGTG 59.822 55.000 0.00 0.00 37.19 4.00
183 184 1.687123 CTACCGCTATTGCCAGTAGGT 59.313 52.381 13.00 8.01 38.16 3.08
184 185 1.605712 GCTACCGCTATTGCCAGTAGG 60.606 57.143 18.77 7.13 40.25 3.18
185 186 1.784525 GCTACCGCTATTGCCAGTAG 58.215 55.000 15.23 15.23 41.59 2.57
186 187 0.031585 CGCTACCGCTATTGCCAGTA 59.968 55.000 0.00 0.00 35.36 2.74
187 188 1.227263 CGCTACCGCTATTGCCAGT 60.227 57.895 0.00 0.00 35.36 4.00
188 189 3.630204 CGCTACCGCTATTGCCAG 58.370 61.111 0.00 0.00 35.36 4.85
198 199 1.855360 GAAATGAGAAGAGCGCTACCG 59.145 52.381 11.50 0.00 37.57 4.02
199 200 2.205911 GGAAATGAGAAGAGCGCTACC 58.794 52.381 11.50 0.00 0.00 3.18
200 201 2.863137 CTGGAAATGAGAAGAGCGCTAC 59.137 50.000 11.50 5.11 0.00 3.58
201 202 2.760650 TCTGGAAATGAGAAGAGCGCTA 59.239 45.455 11.50 0.00 0.00 4.26
202 203 1.552337 TCTGGAAATGAGAAGAGCGCT 59.448 47.619 11.27 11.27 0.00 5.92
203 204 1.932511 CTCTGGAAATGAGAAGAGCGC 59.067 52.381 0.00 0.00 33.68 5.92
206 207 5.596836 AGTAGCTCTGGAAATGAGAAGAG 57.403 43.478 0.00 0.00 39.35 2.85
207 208 6.191315 AGTAGTAGCTCTGGAAATGAGAAGA 58.809 40.000 0.00 0.00 33.68 2.87
208 209 6.463995 AGTAGTAGCTCTGGAAATGAGAAG 57.536 41.667 0.00 0.00 33.68 2.85
209 210 7.068839 CCTTAGTAGTAGCTCTGGAAATGAGAA 59.931 40.741 0.00 0.00 33.68 2.87
210 211 6.547880 CCTTAGTAGTAGCTCTGGAAATGAGA 59.452 42.308 0.00 0.00 33.68 3.27
211 212 6.737346 GCCTTAGTAGTAGCTCTGGAAATGAG 60.737 46.154 0.00 0.00 34.87 2.90
212 213 5.069251 GCCTTAGTAGTAGCTCTGGAAATGA 59.931 44.000 0.00 0.00 0.00 2.57
213 214 5.293560 GCCTTAGTAGTAGCTCTGGAAATG 58.706 45.833 0.00 0.00 0.00 2.32
214 215 4.038162 CGCCTTAGTAGTAGCTCTGGAAAT 59.962 45.833 0.00 0.00 0.00 2.17
215 216 3.380637 CGCCTTAGTAGTAGCTCTGGAAA 59.619 47.826 0.00 0.00 0.00 3.13
216 217 2.950309 CGCCTTAGTAGTAGCTCTGGAA 59.050 50.000 0.00 0.00 0.00 3.53
217 218 2.092538 ACGCCTTAGTAGTAGCTCTGGA 60.093 50.000 0.00 0.00 0.00 3.86
218 219 2.291190 GACGCCTTAGTAGTAGCTCTGG 59.709 54.545 0.00 0.00 0.00 3.86
219 220 2.943690 TGACGCCTTAGTAGTAGCTCTG 59.056 50.000 0.00 0.00 0.00 3.35
220 221 2.944349 GTGACGCCTTAGTAGTAGCTCT 59.056 50.000 0.00 0.00 0.00 4.09
221 222 2.681848 TGTGACGCCTTAGTAGTAGCTC 59.318 50.000 0.00 0.00 0.00 4.09
222 223 2.719739 TGTGACGCCTTAGTAGTAGCT 58.280 47.619 0.00 0.00 0.00 3.32
223 224 3.181489 ACATGTGACGCCTTAGTAGTAGC 60.181 47.826 0.00 0.00 0.00 3.58
224 225 4.634184 ACATGTGACGCCTTAGTAGTAG 57.366 45.455 0.00 0.00 0.00 2.57
225 226 4.036027 GCTACATGTGACGCCTTAGTAGTA 59.964 45.833 9.11 0.00 32.31 1.82
226 227 3.181489 GCTACATGTGACGCCTTAGTAGT 60.181 47.826 9.11 0.00 32.31 2.73
227 228 3.372954 GCTACATGTGACGCCTTAGTAG 58.627 50.000 9.11 0.00 0.00 2.57
228 229 2.223409 CGCTACATGTGACGCCTTAGTA 60.223 50.000 9.11 0.00 0.00 1.82
229 230 1.469251 CGCTACATGTGACGCCTTAGT 60.469 52.381 9.11 0.00 0.00 2.24
230 231 1.200483 CGCTACATGTGACGCCTTAG 58.800 55.000 9.11 0.00 0.00 2.18
231 232 0.804544 GCGCTACATGTGACGCCTTA 60.805 55.000 27.28 0.00 45.35 2.69
232 233 2.100631 GCGCTACATGTGACGCCTT 61.101 57.895 27.28 0.00 45.35 4.35
233 234 2.509336 GCGCTACATGTGACGCCT 60.509 61.111 27.28 0.00 45.35 5.52
236 237 0.735978 TGGAAGCGCTACATGTGACG 60.736 55.000 12.05 13.07 0.00 4.35
237 238 0.721718 GTGGAAGCGCTACATGTGAC 59.278 55.000 12.05 0.00 0.00 3.67
238 239 0.735978 CGTGGAAGCGCTACATGTGA 60.736 55.000 12.05 0.00 0.00 3.58
239 240 1.695893 CCGTGGAAGCGCTACATGTG 61.696 60.000 24.14 15.74 0.00 3.21
240 241 1.447838 CCGTGGAAGCGCTACATGT 60.448 57.895 24.14 2.69 0.00 3.21
241 242 1.153647 TCCGTGGAAGCGCTACATG 60.154 57.895 12.05 18.17 0.00 3.21
242 243 1.153628 GTCCGTGGAAGCGCTACAT 60.154 57.895 12.05 0.00 0.00 2.29
243 244 2.260434 GTCCGTGGAAGCGCTACA 59.740 61.111 12.05 10.99 0.00 2.74
244 245 2.508663 GGTCCGTGGAAGCGCTAC 60.509 66.667 12.05 7.87 0.00 3.58
245 246 2.992689 TGGTCCGTGGAAGCGCTA 60.993 61.111 12.05 0.00 0.00 4.26
246 247 4.379243 CTGGTCCGTGGAAGCGCT 62.379 66.667 2.64 2.64 0.00 5.92
249 250 4.681978 ACGCTGGTCCGTGGAAGC 62.682 66.667 3.01 3.01 40.40 3.86
250 251 2.030562 AACGCTGGTCCGTGGAAG 59.969 61.111 0.00 0.00 41.90 3.46
251 252 2.280524 CAACGCTGGTCCGTGGAA 60.281 61.111 0.00 0.00 41.90 3.53
252 253 3.096633 AACAACGCTGGTCCGTGGA 62.097 57.895 0.00 0.00 41.90 4.02
253 254 2.590575 AACAACGCTGGTCCGTGG 60.591 61.111 0.00 0.00 41.90 4.94
254 255 2.631428 CAACAACGCTGGTCCGTG 59.369 61.111 0.00 0.00 41.90 4.94
255 256 2.372040 TAGCAACAACGCTGGTCCGT 62.372 55.000 0.00 0.00 43.68 4.69
256 257 1.225376 TTAGCAACAACGCTGGTCCG 61.225 55.000 0.00 0.00 43.68 4.79
257 258 1.165270 ATTAGCAACAACGCTGGTCC 58.835 50.000 0.00 0.00 43.68 4.46
258 259 2.989422 AATTAGCAACAACGCTGGTC 57.011 45.000 0.00 0.00 43.68 4.02
271 272 0.659957 AAGCGCTGCTGCTAATTAGC 59.340 50.000 27.23 27.23 46.60 3.09
272 273 1.667724 ACAAGCGCTGCTGCTAATTAG 59.332 47.619 12.58 8.20 46.60 1.73
273 274 1.737838 ACAAGCGCTGCTGCTAATTA 58.262 45.000 12.58 0.00 46.60 1.40
274 275 0.883833 AACAAGCGCTGCTGCTAATT 59.116 45.000 12.58 12.04 46.60 1.40
275 276 1.737838 TAACAAGCGCTGCTGCTAAT 58.262 45.000 12.58 10.08 46.60 1.73
276 277 1.737838 ATAACAAGCGCTGCTGCTAA 58.262 45.000 12.58 0.00 46.60 3.09
277 278 1.737838 AATAACAAGCGCTGCTGCTA 58.262 45.000 12.58 2.07 46.60 3.49
279 280 1.650645 GAAAATAACAAGCGCTGCTGC 59.349 47.619 12.58 5.34 39.62 5.25
280 281 2.253603 GGAAAATAACAAGCGCTGCTG 58.746 47.619 12.58 9.59 39.62 4.41
281 282 1.885887 TGGAAAATAACAAGCGCTGCT 59.114 42.857 12.58 0.01 42.56 4.24
282 283 2.253603 CTGGAAAATAACAAGCGCTGC 58.746 47.619 12.58 0.00 0.00 5.25
283 284 2.253603 GCTGGAAAATAACAAGCGCTG 58.746 47.619 12.58 8.13 0.00 5.18
284 285 1.135689 CGCTGGAAAATAACAAGCGCT 60.136 47.619 2.64 2.64 37.48 5.92
285 286 1.259316 CGCTGGAAAATAACAAGCGC 58.741 50.000 0.00 0.00 37.48 5.92
286 287 1.135689 AGCGCTGGAAAATAACAAGCG 60.136 47.619 10.39 11.56 45.46 4.68
287 288 2.636768 AGCGCTGGAAAATAACAAGC 57.363 45.000 10.39 0.00 0.00 4.01
288 289 4.946784 AGTAGCGCTGGAAAATAACAAG 57.053 40.909 22.90 0.00 0.00 3.16
289 290 5.350365 CAGTAGTAGCGCTGGAAAATAACAA 59.650 40.000 22.90 0.00 0.00 2.83
290 291 4.868171 CAGTAGTAGCGCTGGAAAATAACA 59.132 41.667 22.90 0.00 0.00 2.41
291 292 5.107133 TCAGTAGTAGCGCTGGAAAATAAC 58.893 41.667 22.90 7.46 33.81 1.89
292 293 5.333299 TCAGTAGTAGCGCTGGAAAATAA 57.667 39.130 22.90 0.00 33.81 1.40
293 294 4.994907 TCAGTAGTAGCGCTGGAAAATA 57.005 40.909 22.90 0.00 33.81 1.40
294 295 3.887621 TCAGTAGTAGCGCTGGAAAAT 57.112 42.857 22.90 0.60 33.81 1.82
295 296 3.056107 ACATCAGTAGTAGCGCTGGAAAA 60.056 43.478 22.90 0.00 33.81 2.29
296 297 2.496070 ACATCAGTAGTAGCGCTGGAAA 59.504 45.455 22.90 0.00 33.81 3.13
297 298 2.099263 GACATCAGTAGTAGCGCTGGAA 59.901 50.000 22.90 1.00 33.81 3.53
298 299 1.676529 GACATCAGTAGTAGCGCTGGA 59.323 52.381 22.90 8.13 33.81 3.86
299 300 1.269309 GGACATCAGTAGTAGCGCTGG 60.269 57.143 22.90 2.34 33.81 4.85
300 301 1.678627 AGGACATCAGTAGTAGCGCTG 59.321 52.381 22.90 2.24 0.00 5.18
301 302 2.060050 AGGACATCAGTAGTAGCGCT 57.940 50.000 17.26 17.26 0.00 5.92
302 303 2.030981 GGTAGGACATCAGTAGTAGCGC 60.031 54.545 0.00 0.00 0.00 5.92
303 304 3.478509 AGGTAGGACATCAGTAGTAGCG 58.521 50.000 0.00 0.00 0.00 4.26
304 305 7.148205 GCTTATAGGTAGGACATCAGTAGTAGC 60.148 44.444 0.00 0.00 0.00 3.58
305 306 7.883833 TGCTTATAGGTAGGACATCAGTAGTAG 59.116 40.741 0.00 0.00 0.00 2.57
306 307 7.752638 TGCTTATAGGTAGGACATCAGTAGTA 58.247 38.462 0.00 0.00 0.00 1.82
307 308 6.611785 TGCTTATAGGTAGGACATCAGTAGT 58.388 40.000 0.00 0.00 0.00 2.73
308 309 7.710676 ATGCTTATAGGTAGGACATCAGTAG 57.289 40.000 0.00 0.00 0.00 2.57
309 310 8.492415 AAATGCTTATAGGTAGGACATCAGTA 57.508 34.615 0.00 0.00 0.00 2.74
310 311 7.291182 AGAAATGCTTATAGGTAGGACATCAGT 59.709 37.037 0.00 0.00 0.00 3.41
311 312 7.675062 AGAAATGCTTATAGGTAGGACATCAG 58.325 38.462 0.00 0.00 0.00 2.90
312 313 7.510685 AGAGAAATGCTTATAGGTAGGACATCA 59.489 37.037 0.00 0.00 0.00 3.07
313 314 7.902087 AGAGAAATGCTTATAGGTAGGACATC 58.098 38.462 0.00 0.00 0.00 3.06
314 315 7.863901 AGAGAAATGCTTATAGGTAGGACAT 57.136 36.000 0.00 0.00 0.00 3.06
315 316 8.005388 ACTAGAGAAATGCTTATAGGTAGGACA 58.995 37.037 0.00 0.00 0.00 4.02
316 317 8.411991 ACTAGAGAAATGCTTATAGGTAGGAC 57.588 38.462 0.00 0.00 0.00 3.85
317 318 9.742144 CTACTAGAGAAATGCTTATAGGTAGGA 57.258 37.037 0.00 0.00 0.00 2.94
318 319 9.523168 ACTACTAGAGAAATGCTTATAGGTAGG 57.477 37.037 0.00 0.00 0.00 3.18
320 321 9.863650 ACACTACTAGAGAAATGCTTATAGGTA 57.136 33.333 0.00 0.00 0.00 3.08
321 322 8.634444 CACACTACTAGAGAAATGCTTATAGGT 58.366 37.037 0.00 0.00 0.00 3.08
322 323 8.634444 ACACACTACTAGAGAAATGCTTATAGG 58.366 37.037 0.00 0.00 0.00 2.57
323 324 9.457110 CACACACTACTAGAGAAATGCTTATAG 57.543 37.037 0.00 0.00 0.00 1.31
324 325 8.414003 CCACACACTACTAGAGAAATGCTTATA 58.586 37.037 0.00 0.00 0.00 0.98
325 326 7.268586 CCACACACTACTAGAGAAATGCTTAT 58.731 38.462 0.00 0.00 0.00 1.73
326 327 6.631016 CCACACACTACTAGAGAAATGCTTA 58.369 40.000 0.00 0.00 0.00 3.09
327 328 5.482908 CCACACACTACTAGAGAAATGCTT 58.517 41.667 0.00 0.00 0.00 3.91
328 329 4.621747 GCCACACACTACTAGAGAAATGCT 60.622 45.833 0.00 0.00 0.00 3.79
329 330 3.619038 GCCACACACTACTAGAGAAATGC 59.381 47.826 0.00 0.00 0.00 3.56
330 331 4.627467 GTGCCACACACTACTAGAGAAATG 59.373 45.833 0.00 0.00 46.41 2.32
331 332 4.822026 GTGCCACACACTACTAGAGAAAT 58.178 43.478 0.00 0.00 46.41 2.17
332 333 4.252971 GTGCCACACACTACTAGAGAAA 57.747 45.455 0.00 0.00 46.41 2.52
333 334 3.936372 GTGCCACACACTACTAGAGAA 57.064 47.619 0.00 0.00 46.41 2.87
344 345 1.078072 AAACCGTCAGTGCCACACA 60.078 52.632 0.00 0.00 36.74 3.72
345 346 1.355210 CAAACCGTCAGTGCCACAC 59.645 57.895 0.00 0.00 34.10 3.82
346 347 1.821759 CCAAACCGTCAGTGCCACA 60.822 57.895 0.00 0.00 0.00 4.17
347 348 1.507141 CTCCAAACCGTCAGTGCCAC 61.507 60.000 0.00 0.00 0.00 5.01
348 349 1.227823 CTCCAAACCGTCAGTGCCA 60.228 57.895 0.00 0.00 0.00 4.92
349 350 2.617274 GCTCCAAACCGTCAGTGCC 61.617 63.158 0.00 0.00 0.00 5.01
350 351 2.946762 GCTCCAAACCGTCAGTGC 59.053 61.111 0.00 0.00 0.00 4.40
351 352 2.317609 CCGCTCCAAACCGTCAGTG 61.318 63.158 0.00 0.00 0.00 3.66
352 353 2.030562 CCGCTCCAAACCGTCAGT 59.969 61.111 0.00 0.00 0.00 3.41
353 354 3.423154 GCCGCTCCAAACCGTCAG 61.423 66.667 0.00 0.00 0.00 3.51
356 357 4.388499 ATCGCCGCTCCAAACCGT 62.388 61.111 0.00 0.00 0.00 4.83
357 358 3.864686 CATCGCCGCTCCAAACCG 61.865 66.667 0.00 0.00 0.00 4.44
358 359 2.435938 TCATCGCCGCTCCAAACC 60.436 61.111 0.00 0.00 0.00 3.27
359 360 2.750888 GGTCATCGCCGCTCCAAAC 61.751 63.158 0.00 0.00 0.00 2.93
360 361 2.435938 GGTCATCGCCGCTCCAAA 60.436 61.111 0.00 0.00 0.00 3.28
361 362 4.812476 CGGTCATCGCCGCTCCAA 62.812 66.667 0.00 0.00 45.47 3.53
368 369 2.799540 GCTCGAAACGGTCATCGCC 61.800 63.158 10.38 2.68 43.89 5.54
369 370 2.695646 GCTCGAAACGGTCATCGC 59.304 61.111 10.38 0.00 43.89 4.58
370 371 2.505498 CCGCTCGAAACGGTCATCG 61.505 63.158 16.37 9.28 45.70 3.84
371 372 3.384927 CCGCTCGAAACGGTCATC 58.615 61.111 16.37 0.00 45.70 2.92
377 378 1.419922 CATGTTCCCGCTCGAAACG 59.580 57.895 0.69 0.69 0.00 3.60
378 379 1.134694 GCATGTTCCCGCTCGAAAC 59.865 57.895 0.00 0.00 0.00 2.78
379 380 2.387445 CGCATGTTCCCGCTCGAAA 61.387 57.895 0.00 0.00 0.00 3.46
380 381 2.813474 CGCATGTTCCCGCTCGAA 60.813 61.111 0.00 0.00 0.00 3.71
392 393 4.228097 CTTTCTCGCCCGCGCATG 62.228 66.667 8.75 0.00 39.59 4.06
398 399 4.778143 CACCCCCTTTCTCGCCCG 62.778 72.222 0.00 0.00 0.00 6.13
399 400 4.426313 CCACCCCCTTTCTCGCCC 62.426 72.222 0.00 0.00 0.00 6.13
400 401 4.426313 CCCACCCCCTTTCTCGCC 62.426 72.222 0.00 0.00 0.00 5.54
401 402 4.426313 CCCCACCCCCTTTCTCGC 62.426 72.222 0.00 0.00 0.00 5.03
402 403 2.933834 ACCCCACCCCCTTTCTCG 60.934 66.667 0.00 0.00 0.00 4.04
403 404 1.140772 AAGACCCCACCCCCTTTCTC 61.141 60.000 0.00 0.00 0.00 2.87
404 405 1.072143 AAGACCCCACCCCCTTTCT 60.072 57.895 0.00 0.00 0.00 2.52
405 406 1.076727 CAAGACCCCACCCCCTTTC 59.923 63.158 0.00 0.00 0.00 2.62
406 407 2.478803 CCAAGACCCCACCCCCTTT 61.479 63.158 0.00 0.00 0.00 3.11
407 408 2.863988 CCAAGACCCCACCCCCTT 60.864 66.667 0.00 0.00 0.00 3.95
410 411 3.979497 CACCCAAGACCCCACCCC 61.979 72.222 0.00 0.00 0.00 4.95
411 412 2.856988 TCACCCAAGACCCCACCC 60.857 66.667 0.00 0.00 0.00 4.61
412 413 2.757077 CTCACCCAAGACCCCACC 59.243 66.667 0.00 0.00 0.00 4.61
413 414 2.034221 GCTCACCCAAGACCCCAC 59.966 66.667 0.00 0.00 0.00 4.61
414 415 3.256960 GGCTCACCCAAGACCCCA 61.257 66.667 0.00 0.00 0.00 4.96
415 416 3.256960 TGGCTCACCCAAGACCCC 61.257 66.667 0.00 0.00 41.82 4.95
416 417 2.352805 CTGGCTCACCCAAGACCC 59.647 66.667 0.00 0.00 44.81 4.46
417 418 2.352805 CCTGGCTCACCCAAGACC 59.647 66.667 0.00 0.00 44.81 3.85
418 419 2.352805 CCCTGGCTCACCCAAGAC 59.647 66.667 0.00 0.00 44.81 3.01
419 420 3.650950 GCCCTGGCTCACCCAAGA 61.651 66.667 0.00 0.00 44.81 3.02
429 430 2.123409 TGTTTTTGACAGCCCTGGC 58.877 52.632 0.00 0.00 39.62 4.85
437 438 0.681564 ACCCACGCCTGTTTTTGACA 60.682 50.000 0.00 0.00 36.65 3.58
438 439 1.002142 GTACCCACGCCTGTTTTTGAC 60.002 52.381 0.00 0.00 0.00 3.18
439 440 1.134037 AGTACCCACGCCTGTTTTTGA 60.134 47.619 0.00 0.00 0.00 2.69
440 441 1.001815 CAGTACCCACGCCTGTTTTTG 60.002 52.381 0.00 0.00 0.00 2.44
441 442 1.314730 CAGTACCCACGCCTGTTTTT 58.685 50.000 0.00 0.00 0.00 1.94
442 443 0.181824 ACAGTACCCACGCCTGTTTT 59.818 50.000 0.00 0.00 36.03 2.43
443 444 0.250166 GACAGTACCCACGCCTGTTT 60.250 55.000 0.00 0.00 39.43 2.83
444 445 1.370064 GACAGTACCCACGCCTGTT 59.630 57.895 0.00 0.00 39.43 3.16
445 446 2.580601 GGACAGTACCCACGCCTGT 61.581 63.158 0.00 0.00 41.90 4.00
446 447 2.264794 GGACAGTACCCACGCCTG 59.735 66.667 0.00 0.00 0.00 4.85
447 448 3.379445 CGGACAGTACCCACGCCT 61.379 66.667 0.00 0.00 0.00 5.52
448 449 4.446413 CCGGACAGTACCCACGCC 62.446 72.222 0.00 0.00 0.00 5.68
449 450 3.376078 TCCGGACAGTACCCACGC 61.376 66.667 0.00 0.00 0.00 5.34
450 451 2.570181 GTCCGGACAGTACCCACG 59.430 66.667 29.75 0.00 0.00 4.94
451 452 2.570181 CGTCCGGACAGTACCCAC 59.430 66.667 32.80 4.66 0.00 4.61
452 453 3.376078 GCGTCCGGACAGTACCCA 61.376 66.667 32.80 0.00 0.00 4.51
470 471 3.466314 TGGGAAGCGGCTATGCGA 61.466 61.111 1.35 0.00 40.67 5.10
475 476 1.669760 CAAACGTGGGAAGCGGCTA 60.670 57.895 1.35 0.00 0.00 3.93
480 481 0.868406 CAGAGACAAACGTGGGAAGC 59.132 55.000 0.00 0.00 0.00 3.86
483 484 0.834612 AACCAGAGACAAACGTGGGA 59.165 50.000 0.00 0.00 33.59 4.37
485 486 1.268539 GCAAACCAGAGACAAACGTGG 60.269 52.381 0.00 0.00 34.86 4.94
506 507 1.073964 GGTCCGAACGCCTTTCTTAC 58.926 55.000 0.00 0.00 31.20 2.34
507 508 0.680618 TGGTCCGAACGCCTTTCTTA 59.319 50.000 0.00 0.00 31.20 2.10
508 509 0.036306 ATGGTCCGAACGCCTTTCTT 59.964 50.000 0.00 0.00 31.20 2.52
519 521 1.153449 GATCCGCAACATGGTCCGA 60.153 57.895 0.00 0.00 0.00 4.55
527 529 0.617935 TCCTCCATTGATCCGCAACA 59.382 50.000 0.00 0.00 39.78 3.33
528 530 1.017387 GTCCTCCATTGATCCGCAAC 58.983 55.000 0.00 0.00 39.78 4.17
529 531 0.107214 GGTCCTCCATTGATCCGCAA 60.107 55.000 0.00 0.00 41.53 4.85
537 539 0.953471 TCAAACGCGGTCCTCCATTG 60.953 55.000 12.47 0.00 0.00 2.82
538 540 0.035439 ATCAAACGCGGTCCTCCATT 60.035 50.000 12.47 0.00 0.00 3.16
545 547 1.129809 CGTGTCATCAAACGCGGTC 59.870 57.895 12.47 0.00 46.48 4.79
551 553 4.843147 TCAAACATGTCGTGTCATCAAAC 58.157 39.130 0.00 0.00 41.14 2.93
563 565 0.385473 CCACGCGGTTCAAACATGTC 60.385 55.000 12.47 0.00 0.00 3.06
567 569 3.587933 GGCCACGCGGTTCAAACA 61.588 61.111 12.47 0.00 33.28 2.83
568 570 4.337060 GGGCCACGCGGTTCAAAC 62.337 66.667 12.47 0.00 33.28 2.93
580 582 3.369400 CGGCAATTGTTCGGGCCA 61.369 61.111 4.39 0.00 46.75 5.36
583 585 4.474846 CGCCGGCAATTGTTCGGG 62.475 66.667 29.51 20.74 43.55 5.14
586 588 1.006688 AAACCGCCGGCAATTGTTC 60.007 52.632 28.98 0.00 0.00 3.18
590 592 1.586154 CTCTCAAACCGCCGGCAATT 61.586 55.000 28.98 17.19 0.00 2.32
596 598 2.027625 GGTGACTCTCAAACCGCCG 61.028 63.158 0.00 0.00 0.00 6.46
608 610 2.660064 GGCATCTCCACCGGTGACT 61.660 63.158 36.07 13.82 34.01 3.41
612 614 1.306654 TTAGGGCATCTCCACCGGT 60.307 57.895 0.00 0.00 36.21 5.28
613 615 1.146263 GTTAGGGCATCTCCACCGG 59.854 63.158 0.00 0.00 36.21 5.28
616 618 2.171448 AGTGATGTTAGGGCATCTCCAC 59.829 50.000 7.45 0.00 44.02 4.02
633 635 5.939764 ATGTTGCTAGGACAGAATAGTGA 57.060 39.130 0.00 0.00 0.00 3.41
673 675 2.955614 GTGTGATACTTGGCTACACGT 58.044 47.619 0.00 0.00 33.29 4.49
769 771 1.188863 AGCCACGGTTAAGTACGGAT 58.811 50.000 0.00 0.00 0.00 4.18
791 793 0.458889 TTTCGGATGGAACGCGGTAG 60.459 55.000 12.47 0.00 33.42 3.18
802 806 4.990257 AGAATTTGTGCTGATTTCGGATG 58.010 39.130 0.00 0.00 0.00 3.51
814 818 5.126061 AGAGAGAGAGAGAGAGAATTTGTGC 59.874 44.000 0.00 0.00 0.00 4.57
868 888 3.483196 CGTGCTTGACTTGTTGTGATTTG 59.517 43.478 0.00 0.00 0.00 2.32
954 978 6.768861 AGCCGTGCTTATTTATTGGTTATGTA 59.231 34.615 0.00 0.00 33.89 2.29
1016 1061 2.746277 GCTGCGTCGTTGGGGAAT 60.746 61.111 0.00 0.00 0.00 3.01
1346 1425 1.078918 CTGGTCATCGCAGAGGCAA 60.079 57.895 0.00 0.00 43.63 4.52
1628 1728 1.026182 CGCCAAGGCTACATCTTGCA 61.026 55.000 9.73 0.00 40.00 4.08
1676 1797 3.064987 CTCCGGCGTGGTCCAGTAG 62.065 68.421 6.01 0.00 39.52 2.57
1817 1944 1.138266 GTAAAGACGATGGCCAGCCTA 59.862 52.381 16.93 0.00 36.94 3.93
1865 1992 1.207791 CCTGCATTACCCAGACCTCT 58.792 55.000 0.00 0.00 32.03 3.69
1987 2120 4.148825 GGAGCGGCCACGTGAGAT 62.149 66.667 19.30 6.62 43.45 2.75
2194 2330 0.038892 GGTCTCCACGTAAGCGAACA 60.039 55.000 0.00 0.00 45.62 3.18
2229 2365 2.264794 CGCAAGAGGCCCGTAAGT 59.735 61.111 0.00 0.00 40.31 2.24
2231 2367 2.263540 GACGCAAGAGGCCCGTAA 59.736 61.111 0.00 0.00 40.31 3.18
2282 2418 4.081198 GGAAGATGAGAGCGGGATAATGAT 60.081 45.833 0.00 0.00 0.00 2.45
2369 2509 7.134815 CCAATATGTTTTCTATTCCTGCGAAG 58.865 38.462 0.00 0.00 0.00 3.79
2421 2565 5.421990 GTGAAACATGCGGTAAACAATCCG 61.422 45.833 0.00 0.00 42.89 4.18
2440 2584 3.953712 ACATACATCTCACCACGTGAA 57.046 42.857 19.30 0.70 42.26 3.18
2450 2594 8.895932 GTTAACAACCATTCAACATACATCTC 57.104 34.615 0.00 0.00 0.00 2.75
2531 2705 7.924412 GGTTGATACCGATTGAGATTTACAGTA 59.076 37.037 0.00 0.00 34.01 2.74
2532 2706 6.761714 GGTTGATACCGATTGAGATTTACAGT 59.238 38.462 0.00 0.00 34.01 3.55
2533 2707 7.178712 GGTTGATACCGATTGAGATTTACAG 57.821 40.000 0.00 0.00 34.01 2.74
2557 2731 6.970043 TGACCTTTTGTTTATTTGACAACTCG 59.030 34.615 0.00 0.00 36.79 4.18
2786 2971 8.856153 TGATGTTTGCATTAGGTAGTCTTTTA 57.144 30.769 0.00 0.00 35.07 1.52
2787 2972 7.759489 TGATGTTTGCATTAGGTAGTCTTTT 57.241 32.000 0.00 0.00 35.07 2.27
2788 2973 7.611467 TGATGATGTTTGCATTAGGTAGTCTTT 59.389 33.333 0.00 0.00 35.07 2.52
2794 2979 8.584157 ACTTTTTGATGATGTTTGCATTAGGTA 58.416 29.630 0.00 0.00 35.07 3.08
2842 3027 7.113684 CACGCATTAAAATAGGTGAACGAAAAA 59.886 33.333 0.00 0.00 0.00 1.94
2846 3031 4.691685 ACACGCATTAAAATAGGTGAACGA 59.308 37.500 10.51 0.00 0.00 3.85
2881 3066 4.670621 GCATGTTTCTTGACAAGTACAACG 59.329 41.667 21.19 17.50 32.47 4.10
2891 3076 4.813027 ACATTCCATGCATGTTTCTTGAC 58.187 39.130 24.58 0.00 30.22 3.18
2915 3100 7.497579 TGCTGTTGTTTTAGTATTGTCAAGAGA 59.502 33.333 0.00 0.00 31.13 3.10
2916 3101 7.639039 TGCTGTTGTTTTAGTATTGTCAAGAG 58.361 34.615 0.00 0.00 32.16 2.85
2921 3106 5.757886 TGCTGCTGTTGTTTTAGTATTGTC 58.242 37.500 0.00 0.00 0.00 3.18
2932 3117 0.746659 GTTCCCTTGCTGCTGTTGTT 59.253 50.000 0.00 0.00 0.00 2.83
2933 3118 1.109323 GGTTCCCTTGCTGCTGTTGT 61.109 55.000 0.00 0.00 0.00 3.32
2956 3170 2.066340 CAACCACCCAGTCTGCCTA 58.934 57.895 0.00 0.00 0.00 3.93
2963 3177 1.149174 CAGACTGCAACCACCCAGT 59.851 57.895 0.00 0.00 44.43 4.00
3053 3277 0.329596 AGTGTGATTGCTTCCTCCCC 59.670 55.000 0.00 0.00 0.00 4.81
3056 3280 3.316308 ACAAACAGTGTGATTGCTTCCTC 59.684 43.478 7.47 0.00 39.72 3.71
3057 3281 3.290710 ACAAACAGTGTGATTGCTTCCT 58.709 40.909 7.47 0.00 39.72 3.36
3058 3282 3.715628 ACAAACAGTGTGATTGCTTCC 57.284 42.857 7.47 0.00 39.72 3.46
3075 3299 6.473778 CCAACGATTGTGAACATACAAAACAA 59.526 34.615 0.00 0.00 43.13 2.83
3099 3323 1.584724 TTCCCCCTCTCAGACATTCC 58.415 55.000 0.00 0.00 0.00 3.01
3115 3339 1.856920 TGAATTCCCCACCCCTATTCC 59.143 52.381 2.27 0.00 0.00 3.01
3118 3342 1.573857 GGTTGAATTCCCCACCCCTAT 59.426 52.381 2.27 0.00 0.00 2.57
3135 3359 6.040504 GGGTGTTTTCATTCTAGTTTCAGGTT 59.959 38.462 0.00 0.00 0.00 3.50
3171 3395 2.356638 TCAGTCCTGACTTGGCACAAAA 60.357 45.455 0.00 0.00 40.20 2.44
3173 3397 0.836606 TCAGTCCTGACTTGGCACAA 59.163 50.000 0.00 0.00 40.20 3.33
3174 3398 0.394192 CTCAGTCCTGACTTGGCACA 59.606 55.000 0.00 0.00 40.20 4.57
3183 3407 5.241949 GTCTTTCTTCTGTACTCAGTCCTGA 59.758 44.000 0.00 0.00 41.91 3.86
3185 3409 5.010213 GTGTCTTTCTTCTGTACTCAGTCCT 59.990 44.000 0.00 0.00 41.91 3.85
3193 3417 4.378030 CACGTACGTGTCTTTCTTCTGTAC 59.622 45.833 34.48 0.00 40.91 2.90
3249 3473 7.072177 TCATACACCTGATTTTCAATTCGAC 57.928 36.000 0.00 0.00 0.00 4.20
3528 3815 3.492353 ATACTGCGCTGGCCCCAT 61.492 61.111 18.98 0.00 38.85 4.00
3542 3829 3.951306 TCAAACATATTGCGCTGCATAC 58.049 40.909 9.73 0.00 38.76 2.39
3547 3834 4.541085 TCTGATCAAACATATTGCGCTG 57.459 40.909 9.73 0.00 0.00 5.18
3548 3835 4.494690 CGTTCTGATCAAACATATTGCGCT 60.495 41.667 9.73 0.00 0.00 5.92
3549 3836 3.720818 CGTTCTGATCAAACATATTGCGC 59.279 43.478 0.00 0.00 0.00 6.09
3550 3837 3.720818 GCGTTCTGATCAAACATATTGCG 59.279 43.478 16.01 6.15 0.00 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.