Multiple sequence alignment - TraesCS7D01G140400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G140400 chr7D 100.000 4810 0 0 789 5598 89725904 89730713 0.000000e+00 8883.0
1 TraesCS7D01G140400 chr7D 100.000 602 0 0 1 602 89725116 89725717 0.000000e+00 1112.0
2 TraesCS7D01G140400 chr7D 82.698 341 27 20 4829 5142 89599332 89598997 1.990000e-69 274.0
3 TraesCS7D01G140400 chr7A 94.659 4007 107 42 1652 5598 90660048 90664007 0.000000e+00 6115.0
4 TraesCS7D01G140400 chr7A 89.669 513 32 5 789 1280 90658945 90659457 7.910000e-178 634.0
5 TraesCS7D01G140400 chr7A 92.838 377 12 6 2795 3156 90665906 90666282 2.970000e-147 532.0
6 TraesCS7D01G140400 chr7A 92.580 283 15 4 1294 1570 90659614 90659896 8.740000e-108 401.0
7 TraesCS7D01G140400 chr7A 82.090 335 28 19 4835 5142 90617277 90616948 2.000000e-64 257.0
8 TraesCS7D01G140400 chr7A 87.931 58 5 2 465 520 664781811 664781868 3.620000e-07 67.6
9 TraesCS7D01G140400 chr7B 92.037 3893 193 59 1727 5525 40438795 40442664 0.000000e+00 5363.0
10 TraesCS7D01G140400 chr7B 91.995 787 44 7 793 1565 40437977 40438758 0.000000e+00 1086.0
11 TraesCS7D01G140400 chr7B 76.762 525 90 23 4941 5439 40557377 40557895 1.200000e-66 265.0
12 TraesCS7D01G140400 chr7B 82.111 341 28 18 4829 5141 40353408 40353073 1.550000e-65 261.0
13 TraesCS7D01G140400 chr7B 90.164 61 4 2 334 393 435004384 435004325 1.670000e-10 78.7
14 TraesCS7D01G140400 chr6B 94.203 69 3 1 1562 1629 14541074 14541142 2.760000e-18 104.0
15 TraesCS7D01G140400 chr6B 89.873 79 4 4 1562 1637 113298945 113298868 1.280000e-16 99.0
16 TraesCS7D01G140400 chr6B 88.060 67 8 0 391 457 269946958 269946892 4.650000e-11 80.5
17 TraesCS7D01G140400 chr5D 92.958 71 1 2 1562 1628 415263883 415263953 3.570000e-17 100.0
18 TraesCS7D01G140400 chr5A 91.892 74 3 3 1555 1627 547647539 547647468 3.570000e-17 100.0
19 TraesCS7D01G140400 chr5A 88.889 81 5 4 1562 1638 561531569 561531489 4.620000e-16 97.1
20 TraesCS7D01G140400 chr4D 92.857 70 3 2 1562 1629 382324441 382324510 3.570000e-17 100.0
21 TraesCS7D01G140400 chr1A 92.857 70 3 2 1562 1629 60284313 60284382 3.570000e-17 100.0
22 TraesCS7D01G140400 chr3A 89.024 82 5 2 1555 1632 684589736 684589817 1.280000e-16 99.0
23 TraesCS7D01G140400 chr3A 92.063 63 3 2 330 390 737237910 737237972 2.780000e-13 87.9
24 TraesCS7D01G140400 chr1B 91.429 70 2 2 1562 1627 491239723 491239654 5.970000e-15 93.5
25 TraesCS7D01G140400 chr1D 92.063 63 2 3 330 390 433503622 433503561 9.990000e-13 86.1
26 TraesCS7D01G140400 chr2A 85.915 71 10 0 391 461 673450849 673450779 6.010000e-10 76.8
27 TraesCS7D01G140400 chr4B 95.652 46 2 0 465 510 576168111 576168066 2.160000e-09 75.0
28 TraesCS7D01G140400 chr3D 94.000 50 2 1 465 514 384867212 384867260 2.160000e-09 75.0
29 TraesCS7D01G140400 chr3D 92.683 41 1 2 77 117 143670306 143670268 2.180000e-04 58.4
30 TraesCS7D01G140400 chr2B 92.000 50 4 0 465 514 568278339 568278388 2.800000e-08 71.3
31 TraesCS7D01G140400 chr3B 89.796 49 4 1 392 440 559876917 559876870 1.680000e-05 62.1
32 TraesCS7D01G140400 chr2D 100.000 31 0 0 77 107 459807213 459807243 2.180000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G140400 chr7D 89725116 89730713 5597 False 4997.5 8883 100.0000 1 5598 2 chr7D.!!$F1 5597
1 TraesCS7D01G140400 chr7A 90658945 90666282 7337 False 1920.5 6115 92.4365 789 5598 4 chr7A.!!$F2 4809
2 TraesCS7D01G140400 chr7B 40437977 40442664 4687 False 3224.5 5363 92.0160 793 5525 2 chr7B.!!$F2 4732
3 TraesCS7D01G140400 chr7B 40557377 40557895 518 False 265.0 265 76.7620 4941 5439 1 chr7B.!!$F1 498

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
554 555 0.037975 GCAAATTGGTCAGCAGGTGG 60.038 55.000 0.00 0.00 0.00 4.61 F
1271 1293 1.068541 GTTTGAGCGGGTTTAGCTTGG 60.069 52.381 0.00 0.00 46.13 3.61 F
2511 2762 1.065854 CCTCCTTCAGGCTGGTAAGTG 60.066 57.143 15.73 6.41 34.56 3.16 F
3397 3665 1.069513 TGTCTGTGTCCCTGGTAAACG 59.930 52.381 0.00 0.00 0.00 3.60 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1705 1951 1.176619 GCCAACCGTTTAGGCTTGGT 61.177 55.000 14.94 0.0 45.17 3.67 R
3070 3336 2.435805 CTGCTCCAAGTTCTATAGGCCA 59.564 50.000 5.01 0.0 0.00 5.36 R
4107 4402 2.633509 GCTCCCTTTGCCTGCACAG 61.634 63.158 0.00 0.0 0.00 3.66 R
4924 5244 1.139455 TCCGACGAACCAACTCCTTTT 59.861 47.619 0.00 0.0 0.00 2.27 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 8.873215 AATACTCCTAGTTTCGTCATAACATG 57.127 34.615 0.00 0.00 0.00 3.21
29 30 6.282199 ACTCCTAGTTTCGTCATAACATGT 57.718 37.500 0.00 0.00 0.00 3.21
30 31 6.698380 ACTCCTAGTTTCGTCATAACATGTT 58.302 36.000 16.68 16.68 0.00 2.71
31 32 6.590292 ACTCCTAGTTTCGTCATAACATGTTG 59.410 38.462 21.42 6.25 0.00 3.33
32 33 6.693466 TCCTAGTTTCGTCATAACATGTTGA 58.307 36.000 21.42 8.79 0.00 3.18
33 34 6.811665 TCCTAGTTTCGTCATAACATGTTGAG 59.188 38.462 21.42 12.85 0.00 3.02
34 35 5.283060 AGTTTCGTCATAACATGTTGAGC 57.717 39.130 21.42 7.61 0.00 4.26
35 36 4.997395 AGTTTCGTCATAACATGTTGAGCT 59.003 37.500 21.42 8.33 0.00 4.09
36 37 5.470098 AGTTTCGTCATAACATGTTGAGCTT 59.530 36.000 21.42 0.00 0.00 3.74
37 38 5.940192 TTCGTCATAACATGTTGAGCTTT 57.060 34.783 21.42 0.00 0.00 3.51
38 39 5.940192 TCGTCATAACATGTTGAGCTTTT 57.060 34.783 21.42 0.00 0.00 2.27
39 40 5.688823 TCGTCATAACATGTTGAGCTTTTG 58.311 37.500 21.42 7.19 0.00 2.44
40 41 4.853196 CGTCATAACATGTTGAGCTTTTGG 59.147 41.667 21.42 0.56 0.00 3.28
41 42 5.562696 CGTCATAACATGTTGAGCTTTTGGT 60.563 40.000 21.42 0.00 0.00 3.67
42 43 5.858581 GTCATAACATGTTGAGCTTTTGGTC 59.141 40.000 21.42 0.00 46.33 4.02
75 76 9.543783 CCTAGTGGTTTGTTAATCTAATACTCC 57.456 37.037 0.00 0.00 0.00 3.85
78 79 8.265764 AGTGGTTTGTTAATCTAATACTCCTCC 58.734 37.037 0.00 0.00 0.00 4.30
79 80 8.044908 GTGGTTTGTTAATCTAATACTCCTCCA 58.955 37.037 0.00 0.00 0.00 3.86
80 81 8.607713 TGGTTTGTTAATCTAATACTCCTCCAA 58.392 33.333 0.00 0.00 0.00 3.53
81 82 9.457436 GGTTTGTTAATCTAATACTCCTCCAAA 57.543 33.333 0.00 0.00 0.00 3.28
91 92 9.542462 TCTAATACTCCTCCAAATTAATTGACG 57.458 33.333 0.39 0.00 41.85 4.35
92 93 4.965119 ACTCCTCCAAATTAATTGACGC 57.035 40.909 0.39 0.00 41.85 5.19
93 94 4.331968 ACTCCTCCAAATTAATTGACGCA 58.668 39.130 0.39 0.00 41.85 5.24
94 95 4.396166 ACTCCTCCAAATTAATTGACGCAG 59.604 41.667 0.39 0.00 41.85 5.18
95 96 3.128589 TCCTCCAAATTAATTGACGCAGC 59.871 43.478 0.39 0.00 41.85 5.25
96 97 3.129287 CCTCCAAATTAATTGACGCAGCT 59.871 43.478 0.39 0.00 41.85 4.24
97 98 4.380867 CCTCCAAATTAATTGACGCAGCTT 60.381 41.667 0.39 0.00 41.85 3.74
98 99 5.132897 TCCAAATTAATTGACGCAGCTTT 57.867 34.783 0.39 0.00 41.85 3.51
99 100 6.260870 TCCAAATTAATTGACGCAGCTTTA 57.739 33.333 0.39 0.00 41.85 1.85
100 101 6.682746 TCCAAATTAATTGACGCAGCTTTAA 58.317 32.000 0.39 0.00 41.85 1.52
101 102 7.319646 TCCAAATTAATTGACGCAGCTTTAAT 58.680 30.769 0.39 0.00 41.85 1.40
102 103 8.462811 TCCAAATTAATTGACGCAGCTTTAATA 58.537 29.630 0.39 0.00 41.85 0.98
103 104 8.531530 CCAAATTAATTGACGCAGCTTTAATAC 58.468 33.333 0.39 0.00 41.85 1.89
104 105 9.071221 CAAATTAATTGACGCAGCTTTAATACA 57.929 29.630 0.39 0.00 41.85 2.29
105 106 9.632807 AAATTAATTGACGCAGCTTTAATACAA 57.367 25.926 0.39 0.00 0.00 2.41
106 107 8.614994 ATTAATTGACGCAGCTTTAATACAAC 57.385 30.769 0.00 0.00 0.00 3.32
107 108 5.880054 ATTGACGCAGCTTTAATACAACT 57.120 34.783 0.00 0.00 0.00 3.16
108 109 5.682943 TTGACGCAGCTTTAATACAACTT 57.317 34.783 0.00 0.00 0.00 2.66
109 110 5.682943 TGACGCAGCTTTAATACAACTTT 57.317 34.783 0.00 0.00 0.00 2.66
110 111 6.788684 TGACGCAGCTTTAATACAACTTTA 57.211 33.333 0.00 0.00 0.00 1.85
111 112 7.372451 TGACGCAGCTTTAATACAACTTTAT 57.628 32.000 0.00 0.00 0.00 1.40
112 113 8.481974 TGACGCAGCTTTAATACAACTTTATA 57.518 30.769 0.00 0.00 0.00 0.98
113 114 9.104965 TGACGCAGCTTTAATACAACTTTATAT 57.895 29.630 0.00 0.00 0.00 0.86
125 126 9.695155 AATACAACTTTATATACTTTGCACCCT 57.305 29.630 0.00 0.00 0.00 4.34
126 127 7.625828 ACAACTTTATATACTTTGCACCCTC 57.374 36.000 0.00 0.00 0.00 4.30
127 128 6.602009 ACAACTTTATATACTTTGCACCCTCC 59.398 38.462 0.00 0.00 0.00 4.30
128 129 5.691896 ACTTTATATACTTTGCACCCTCCC 58.308 41.667 0.00 0.00 0.00 4.30
129 130 5.192923 ACTTTATATACTTTGCACCCTCCCA 59.807 40.000 0.00 0.00 0.00 4.37
130 131 5.922960 TTATATACTTTGCACCCTCCCAT 57.077 39.130 0.00 0.00 0.00 4.00
131 132 2.736670 ATACTTTGCACCCTCCCATC 57.263 50.000 0.00 0.00 0.00 3.51
132 133 0.251916 TACTTTGCACCCTCCCATCG 59.748 55.000 0.00 0.00 0.00 3.84
133 134 1.299648 CTTTGCACCCTCCCATCGA 59.700 57.895 0.00 0.00 0.00 3.59
134 135 1.002624 TTTGCACCCTCCCATCGAC 60.003 57.895 0.00 0.00 0.00 4.20
135 136 1.488705 TTTGCACCCTCCCATCGACT 61.489 55.000 0.00 0.00 0.00 4.18
136 137 2.184020 TTGCACCCTCCCATCGACTG 62.184 60.000 0.00 0.00 0.00 3.51
137 138 2.359169 GCACCCTCCCATCGACTGA 61.359 63.158 0.00 0.00 0.00 3.41
138 139 1.899437 GCACCCTCCCATCGACTGAA 61.899 60.000 0.00 0.00 0.00 3.02
139 140 0.613260 CACCCTCCCATCGACTGAAA 59.387 55.000 0.00 0.00 0.00 2.69
140 141 1.210478 CACCCTCCCATCGACTGAAAT 59.790 52.381 0.00 0.00 0.00 2.17
141 142 1.486726 ACCCTCCCATCGACTGAAATC 59.513 52.381 0.00 0.00 0.00 2.17
142 143 1.765314 CCCTCCCATCGACTGAAATCT 59.235 52.381 0.00 0.00 0.00 2.40
143 144 2.484417 CCCTCCCATCGACTGAAATCTG 60.484 54.545 0.00 0.00 0.00 2.90
144 145 2.484417 CCTCCCATCGACTGAAATCTGG 60.484 54.545 0.00 0.00 0.00 3.86
145 146 1.486310 TCCCATCGACTGAAATCTGGG 59.514 52.381 9.74 9.74 40.62 4.45
146 147 1.486310 CCCATCGACTGAAATCTGGGA 59.514 52.381 10.37 0.00 41.42 4.37
147 148 2.092968 CCCATCGACTGAAATCTGGGAA 60.093 50.000 10.37 0.00 41.42 3.97
148 149 2.939103 CCATCGACTGAAATCTGGGAAC 59.061 50.000 0.00 0.00 0.00 3.62
149 150 3.599343 CATCGACTGAAATCTGGGAACA 58.401 45.455 0.00 0.00 39.59 3.18
150 151 3.040147 TCGACTGAAATCTGGGAACAC 57.960 47.619 0.00 0.00 35.60 3.32
151 152 1.726791 CGACTGAAATCTGGGAACACG 59.273 52.381 0.00 0.00 35.60 4.49
152 153 2.609491 CGACTGAAATCTGGGAACACGA 60.609 50.000 0.00 0.00 35.60 4.35
153 154 3.600388 GACTGAAATCTGGGAACACGAT 58.400 45.455 0.00 0.00 35.60 3.73
154 155 4.676986 CGACTGAAATCTGGGAACACGATA 60.677 45.833 0.00 0.00 35.60 2.92
155 156 4.504858 ACTGAAATCTGGGAACACGATAC 58.495 43.478 0.00 0.00 35.60 2.24
156 157 4.020573 ACTGAAATCTGGGAACACGATACA 60.021 41.667 0.00 0.00 35.60 2.29
157 158 4.900684 TGAAATCTGGGAACACGATACAA 58.099 39.130 0.00 0.00 35.60 2.41
158 159 5.309638 TGAAATCTGGGAACACGATACAAA 58.690 37.500 0.00 0.00 35.60 2.83
159 160 5.765677 TGAAATCTGGGAACACGATACAAAA 59.234 36.000 0.00 0.00 35.60 2.44
160 161 6.432783 TGAAATCTGGGAACACGATACAAAAT 59.567 34.615 0.00 0.00 35.60 1.82
161 162 5.818136 ATCTGGGAACACGATACAAAATG 57.182 39.130 0.00 0.00 35.60 2.32
162 163 4.647611 TCTGGGAACACGATACAAAATGT 58.352 39.130 0.00 0.00 35.60 2.71
163 164 5.795972 TCTGGGAACACGATACAAAATGTA 58.204 37.500 0.00 0.00 34.92 2.29
164 165 5.872617 TCTGGGAACACGATACAAAATGTAG 59.127 40.000 0.00 0.00 34.26 2.74
165 166 4.938832 TGGGAACACGATACAAAATGTAGG 59.061 41.667 0.00 0.00 33.33 3.18
166 167 5.180271 GGGAACACGATACAAAATGTAGGA 58.820 41.667 0.00 0.00 36.14 2.94
167 168 5.644636 GGGAACACGATACAAAATGTAGGAA 59.355 40.000 0.00 0.00 36.14 3.36
168 169 6.149807 GGGAACACGATACAAAATGTAGGAAA 59.850 38.462 0.00 0.00 36.14 3.13
169 170 7.308710 GGGAACACGATACAAAATGTAGGAAAA 60.309 37.037 0.00 0.00 36.14 2.29
170 171 7.536281 GGAACACGATACAAAATGTAGGAAAAC 59.464 37.037 0.00 0.00 36.14 2.43
171 172 7.739498 ACACGATACAAAATGTAGGAAAACT 57.261 32.000 0.00 0.00 36.14 2.66
172 173 8.161699 ACACGATACAAAATGTAGGAAAACTT 57.838 30.769 0.00 0.00 36.14 2.66
173 174 8.073768 ACACGATACAAAATGTAGGAAAACTTG 58.926 33.333 0.00 0.00 36.14 3.16
174 175 7.060633 CACGATACAAAATGTAGGAAAACTTGC 59.939 37.037 0.00 0.00 36.14 4.01
175 176 7.081349 CGATACAAAATGTAGGAAAACTTGCA 58.919 34.615 0.00 0.00 36.14 4.08
176 177 7.754924 CGATACAAAATGTAGGAAAACTTGCAT 59.245 33.333 0.00 0.00 36.14 3.96
177 178 8.761575 ATACAAAATGTAGGAAAACTTGCATG 57.238 30.769 0.00 0.00 36.14 4.06
178 179 5.990996 ACAAAATGTAGGAAAACTTGCATGG 59.009 36.000 4.44 0.00 0.00 3.66
179 180 3.874392 ATGTAGGAAAACTTGCATGGC 57.126 42.857 4.44 0.00 0.00 4.40
180 181 2.875296 TGTAGGAAAACTTGCATGGCT 58.125 42.857 4.44 0.00 0.00 4.75
181 182 2.557924 TGTAGGAAAACTTGCATGGCTG 59.442 45.455 4.44 0.00 0.00 4.85
209 210 3.080647 GGTTTATCACCCCTGAGCG 57.919 57.895 0.00 0.00 40.19 5.03
210 211 0.463833 GGTTTATCACCCCTGAGCGG 60.464 60.000 0.00 0.00 40.19 5.52
211 212 0.539986 GTTTATCACCCCTGAGCGGA 59.460 55.000 0.00 0.00 33.16 5.54
212 213 0.830648 TTTATCACCCCTGAGCGGAG 59.169 55.000 0.00 0.00 33.16 4.63
213 214 1.048724 TTATCACCCCTGAGCGGAGG 61.049 60.000 0.00 0.00 33.16 4.30
218 219 3.790437 CCCTGAGCGGAGGCACAT 61.790 66.667 0.00 0.00 43.41 3.21
219 220 2.434843 CCCTGAGCGGAGGCACATA 61.435 63.158 0.00 0.00 43.41 2.29
220 221 1.522092 CCTGAGCGGAGGCACATAA 59.478 57.895 0.00 0.00 43.41 1.90
221 222 0.107456 CCTGAGCGGAGGCACATAAT 59.893 55.000 0.00 0.00 43.41 1.28
222 223 1.475751 CCTGAGCGGAGGCACATAATT 60.476 52.381 0.00 0.00 43.41 1.40
223 224 2.292267 CTGAGCGGAGGCACATAATTT 58.708 47.619 0.00 0.00 43.41 1.82
224 225 2.016318 TGAGCGGAGGCACATAATTTG 58.984 47.619 0.00 0.00 43.41 2.32
225 226 2.017049 GAGCGGAGGCACATAATTTGT 58.983 47.619 0.00 0.00 43.41 2.83
237 238 5.720371 ACATAATTTGTGCCTTGTTAGCA 57.280 34.783 0.00 0.00 37.11 3.49
238 239 5.713025 ACATAATTTGTGCCTTGTTAGCAG 58.287 37.500 0.00 0.00 41.87 4.24
239 240 3.665745 AATTTGTGCCTTGTTAGCAGG 57.334 42.857 0.00 0.00 41.87 4.85
240 241 2.065899 TTTGTGCCTTGTTAGCAGGT 57.934 45.000 0.00 0.00 41.87 4.00
241 242 1.604604 TTGTGCCTTGTTAGCAGGTC 58.395 50.000 0.00 0.00 41.87 3.85
242 243 0.602638 TGTGCCTTGTTAGCAGGTCG 60.603 55.000 0.00 0.00 41.87 4.79
243 244 1.671054 TGCCTTGTTAGCAGGTCGC 60.671 57.895 0.00 0.00 42.91 5.19
244 245 1.671054 GCCTTGTTAGCAGGTCGCA 60.671 57.895 0.00 0.00 46.13 5.10
245 246 1.234615 GCCTTGTTAGCAGGTCGCAA 61.235 55.000 0.00 0.00 46.13 4.85
246 247 0.517316 CCTTGTTAGCAGGTCGCAAC 59.483 55.000 0.00 0.00 46.13 4.17
247 248 0.163788 CTTGTTAGCAGGTCGCAACG 59.836 55.000 0.00 0.00 46.13 4.10
248 249 1.225376 TTGTTAGCAGGTCGCAACGG 61.225 55.000 0.00 0.00 46.13 4.44
249 250 2.047655 TTAGCAGGTCGCAACGGG 60.048 61.111 0.00 0.00 46.13 5.28
250 251 3.599285 TTAGCAGGTCGCAACGGGG 62.599 63.158 0.00 0.00 46.13 5.73
252 253 4.778143 GCAGGTCGCAACGGGGAT 62.778 66.667 0.00 0.00 41.79 3.85
253 254 2.819595 CAGGTCGCAACGGGGATG 60.820 66.667 0.00 0.00 38.34 3.51
254 255 4.778143 AGGTCGCAACGGGGATGC 62.778 66.667 0.00 0.00 38.34 3.91
256 257 3.799755 GTCGCAACGGGGATGCAC 61.800 66.667 0.00 0.00 44.01 4.57
257 258 4.321966 TCGCAACGGGGATGCACA 62.322 61.111 0.00 0.00 44.01 4.57
258 259 3.133464 CGCAACGGGGATGCACAT 61.133 61.111 0.00 0.00 44.01 3.21
259 260 1.817520 CGCAACGGGGATGCACATA 60.818 57.895 0.00 0.00 44.01 2.29
260 261 1.165907 CGCAACGGGGATGCACATAT 61.166 55.000 0.00 0.00 44.01 1.78
261 262 1.875996 CGCAACGGGGATGCACATATA 60.876 52.381 0.00 0.00 44.01 0.86
262 263 2.226330 GCAACGGGGATGCACATATAA 58.774 47.619 0.00 0.00 43.29 0.98
263 264 2.621055 GCAACGGGGATGCACATATAAA 59.379 45.455 0.00 0.00 43.29 1.40
264 265 3.304659 GCAACGGGGATGCACATATAAAG 60.305 47.826 0.00 0.00 43.29 1.85
265 266 4.133820 CAACGGGGATGCACATATAAAGA 58.866 43.478 0.00 0.00 0.00 2.52
266 267 4.431416 ACGGGGATGCACATATAAAGAA 57.569 40.909 0.00 0.00 0.00 2.52
267 268 4.985538 ACGGGGATGCACATATAAAGAAT 58.014 39.130 0.00 0.00 0.00 2.40
268 269 6.121776 ACGGGGATGCACATATAAAGAATA 57.878 37.500 0.00 0.00 0.00 1.75
269 270 6.539173 ACGGGGATGCACATATAAAGAATAA 58.461 36.000 0.00 0.00 0.00 1.40
270 271 7.175104 ACGGGGATGCACATATAAAGAATAAT 58.825 34.615 0.00 0.00 0.00 1.28
271 272 7.121168 ACGGGGATGCACATATAAAGAATAATG 59.879 37.037 0.00 0.00 0.00 1.90
272 273 7.336679 CGGGGATGCACATATAAAGAATAATGA 59.663 37.037 0.00 0.00 0.00 2.57
273 274 9.193806 GGGGATGCACATATAAAGAATAATGAT 57.806 33.333 0.00 0.00 0.00 2.45
288 289 8.964476 AGAATAATGATATGGAAACGAAGTGT 57.036 30.769 0.00 0.00 45.00 3.55
289 290 9.396022 AGAATAATGATATGGAAACGAAGTGTT 57.604 29.630 0.00 0.00 45.00 3.32
293 294 8.506168 AATGATATGGAAACGAAGTGTTATGT 57.494 30.769 0.00 0.00 45.00 2.29
294 295 7.915293 TGATATGGAAACGAAGTGTTATGTT 57.085 32.000 0.00 0.00 45.00 2.71
295 296 9.607988 ATGATATGGAAACGAAGTGTTATGTTA 57.392 29.630 0.00 0.00 45.00 2.41
296 297 9.438228 TGATATGGAAACGAAGTGTTATGTTAA 57.562 29.630 0.00 0.00 45.00 2.01
301 302 9.275398 TGGAAACGAAGTGTTATGTTAATTACT 57.725 29.630 0.00 0.00 45.00 2.24
302 303 9.750882 GGAAACGAAGTGTTATGTTAATTACTC 57.249 33.333 0.00 0.00 45.00 2.59
303 304 9.750882 GAAACGAAGTGTTATGTTAATTACTCC 57.249 33.333 0.00 0.00 45.00 3.85
304 305 7.838771 ACGAAGTGTTATGTTAATTACTCCC 57.161 36.000 0.00 0.00 42.51 4.30
305 306 7.618137 ACGAAGTGTTATGTTAATTACTCCCT 58.382 34.615 0.00 0.00 42.51 4.20
306 307 7.763071 ACGAAGTGTTATGTTAATTACTCCCTC 59.237 37.037 0.00 0.00 42.51 4.30
307 308 7.224167 CGAAGTGTTATGTTAATTACTCCCTCC 59.776 40.741 0.00 0.00 0.00 4.30
308 309 7.504926 AGTGTTATGTTAATTACTCCCTCCA 57.495 36.000 0.00 0.00 0.00 3.86
309 310 7.924541 AGTGTTATGTTAATTACTCCCTCCAA 58.075 34.615 0.00 0.00 0.00 3.53
310 311 8.557450 AGTGTTATGTTAATTACTCCCTCCAAT 58.443 33.333 0.00 0.00 0.00 3.16
311 312 8.837389 GTGTTATGTTAATTACTCCCTCCAATC 58.163 37.037 0.00 0.00 0.00 2.67
312 313 8.553153 TGTTATGTTAATTACTCCCTCCAATCA 58.447 33.333 0.00 0.00 0.00 2.57
313 314 8.837389 GTTATGTTAATTACTCCCTCCAATCAC 58.163 37.037 0.00 0.00 0.00 3.06
314 315 6.381498 TGTTAATTACTCCCTCCAATCACA 57.619 37.500 0.00 0.00 0.00 3.58
315 316 6.414732 TGTTAATTACTCCCTCCAATCACAG 58.585 40.000 0.00 0.00 0.00 3.66
316 317 6.214615 TGTTAATTACTCCCTCCAATCACAGA 59.785 38.462 0.00 0.00 0.00 3.41
317 318 5.983333 AATTACTCCCTCCAATCACAGAT 57.017 39.130 0.00 0.00 0.00 2.90
318 319 8.429641 GTTAATTACTCCCTCCAATCACAGATA 58.570 37.037 0.00 0.00 0.00 1.98
319 320 7.639062 AATTACTCCCTCCAATCACAGATAT 57.361 36.000 0.00 0.00 0.00 1.63
320 321 8.742125 AATTACTCCCTCCAATCACAGATATA 57.258 34.615 0.00 0.00 0.00 0.86
321 322 8.742125 ATTACTCCCTCCAATCACAGATATAA 57.258 34.615 0.00 0.00 0.00 0.98
322 323 6.678568 ACTCCCTCCAATCACAGATATAAG 57.321 41.667 0.00 0.00 0.00 1.73
323 324 6.385443 ACTCCCTCCAATCACAGATATAAGA 58.615 40.000 0.00 0.00 0.00 2.10
324 325 7.021873 ACTCCCTCCAATCACAGATATAAGAT 58.978 38.462 0.00 0.00 0.00 2.40
325 326 7.038445 ACTCCCTCCAATCACAGATATAAGATG 60.038 40.741 0.00 0.00 0.00 2.90
326 327 6.789457 TCCCTCCAATCACAGATATAAGATGT 59.211 38.462 0.00 0.00 0.00 3.06
327 328 7.293299 TCCCTCCAATCACAGATATAAGATGTT 59.707 37.037 0.00 0.00 0.00 2.71
328 329 7.941238 CCCTCCAATCACAGATATAAGATGTTT 59.059 37.037 0.00 0.00 0.00 2.83
329 330 9.347240 CCTCCAATCACAGATATAAGATGTTTT 57.653 33.333 0.00 0.00 0.00 2.43
370 371 9.895138 ATTTTGATTTTCAATAAAGCTAGCCAT 57.105 25.926 12.13 2.74 36.11 4.40
371 372 8.706492 TTTGATTTTCAATAAAGCTAGCCATG 57.294 30.769 12.13 3.85 36.11 3.66
372 373 7.643569 TGATTTTCAATAAAGCTAGCCATGA 57.356 32.000 12.13 6.28 0.00 3.07
373 374 8.241497 TGATTTTCAATAAAGCTAGCCATGAT 57.759 30.769 12.13 0.00 0.00 2.45
374 375 8.139350 TGATTTTCAATAAAGCTAGCCATGATG 58.861 33.333 12.13 6.10 0.00 3.07
375 376 7.408756 TTTTCAATAAAGCTAGCCATGATGT 57.591 32.000 12.13 0.00 0.00 3.06
376 377 6.624352 TTCAATAAAGCTAGCCATGATGTC 57.376 37.500 12.13 0.00 0.00 3.06
377 378 5.065914 TCAATAAAGCTAGCCATGATGTCC 58.934 41.667 12.13 0.00 0.00 4.02
378 379 4.989875 ATAAAGCTAGCCATGATGTCCT 57.010 40.909 12.13 0.00 0.00 3.85
379 380 3.659183 AAAGCTAGCCATGATGTCCTT 57.341 42.857 12.13 0.00 0.00 3.36
380 381 2.926778 AGCTAGCCATGATGTCCTTC 57.073 50.000 12.13 0.00 0.00 3.46
381 382 1.419387 AGCTAGCCATGATGTCCTTCC 59.581 52.381 12.13 0.00 0.00 3.46
382 383 1.419387 GCTAGCCATGATGTCCTTCCT 59.581 52.381 2.29 0.00 0.00 3.36
383 384 2.634940 GCTAGCCATGATGTCCTTCCTA 59.365 50.000 2.29 0.00 0.00 2.94
384 385 3.071602 GCTAGCCATGATGTCCTTCCTAA 59.928 47.826 2.29 0.00 0.00 2.69
385 386 4.444876 GCTAGCCATGATGTCCTTCCTAAA 60.445 45.833 2.29 0.00 0.00 1.85
386 387 4.591321 AGCCATGATGTCCTTCCTAAAA 57.409 40.909 0.00 0.00 0.00 1.52
387 388 4.934356 AGCCATGATGTCCTTCCTAAAAA 58.066 39.130 0.00 0.00 0.00 1.94
420 421 9.784680 ATTTTAACGTAGACTACATACAGACTG 57.215 33.333 12.99 0.00 0.00 3.51
421 422 8.552083 TTTAACGTAGACTACATACAGACTGA 57.448 34.615 10.08 0.00 0.00 3.41
422 423 8.552083 TTAACGTAGACTACATACAGACTGAA 57.448 34.615 10.08 0.00 0.00 3.02
423 424 7.444629 AACGTAGACTACATACAGACTGAAA 57.555 36.000 10.08 0.00 0.00 2.69
424 425 7.627298 ACGTAGACTACATACAGACTGAAAT 57.373 36.000 10.08 0.00 0.00 2.17
425 426 8.728337 ACGTAGACTACATACAGACTGAAATA 57.272 34.615 10.08 0.00 0.00 1.40
426 427 9.170734 ACGTAGACTACATACAGACTGAAATAA 57.829 33.333 10.08 0.00 0.00 1.40
427 428 9.653067 CGTAGACTACATACAGACTGAAATAAG 57.347 37.037 10.08 3.66 0.00 1.73
428 429 9.453325 GTAGACTACATACAGACTGAAATAAGC 57.547 37.037 10.08 0.00 0.00 3.09
429 430 7.197017 AGACTACATACAGACTGAAATAAGCG 58.803 38.462 10.08 0.00 0.00 4.68
430 431 7.067129 AGACTACATACAGACTGAAATAAGCGA 59.933 37.037 10.08 0.00 0.00 4.93
431 432 7.544622 ACTACATACAGACTGAAATAAGCGAA 58.455 34.615 10.08 0.00 0.00 4.70
432 433 6.648725 ACATACAGACTGAAATAAGCGAAC 57.351 37.500 10.08 0.00 0.00 3.95
433 434 6.163476 ACATACAGACTGAAATAAGCGAACA 58.837 36.000 10.08 0.00 0.00 3.18
434 435 6.649141 ACATACAGACTGAAATAAGCGAACAA 59.351 34.615 10.08 0.00 0.00 2.83
435 436 7.172532 ACATACAGACTGAAATAAGCGAACAAA 59.827 33.333 10.08 0.00 0.00 2.83
436 437 5.748592 ACAGACTGAAATAAGCGAACAAAC 58.251 37.500 10.08 0.00 0.00 2.93
437 438 5.295787 ACAGACTGAAATAAGCGAACAAACA 59.704 36.000 10.08 0.00 0.00 2.83
438 439 5.621228 CAGACTGAAATAAGCGAACAAACAC 59.379 40.000 0.00 0.00 0.00 3.32
439 440 5.295787 AGACTGAAATAAGCGAACAAACACA 59.704 36.000 0.00 0.00 0.00 3.72
440 441 5.270853 ACTGAAATAAGCGAACAAACACAC 58.729 37.500 0.00 0.00 0.00 3.82
441 442 5.065988 ACTGAAATAAGCGAACAAACACACT 59.934 36.000 0.00 0.00 0.00 3.55
442 443 6.259167 ACTGAAATAAGCGAACAAACACACTA 59.741 34.615 0.00 0.00 0.00 2.74
443 444 7.017498 TGAAATAAGCGAACAAACACACTAA 57.983 32.000 0.00 0.00 0.00 2.24
444 445 7.129622 TGAAATAAGCGAACAAACACACTAAG 58.870 34.615 0.00 0.00 0.00 2.18
445 446 6.854496 AATAAGCGAACAAACACACTAAGA 57.146 33.333 0.00 0.00 0.00 2.10
446 447 4.531659 AAGCGAACAAACACACTAAGAC 57.468 40.909 0.00 0.00 0.00 3.01
447 448 2.538449 AGCGAACAAACACACTAAGACG 59.462 45.455 0.00 0.00 0.00 4.18
448 449 2.283351 GCGAACAAACACACTAAGACGT 59.717 45.455 0.00 0.00 0.00 4.34
449 450 3.839954 GCGAACAAACACACTAAGACGTG 60.840 47.826 0.00 0.00 40.67 4.49
451 452 4.547587 CGAACAAACACACTAAGACGTGTC 60.548 45.833 0.00 0.00 45.74 3.67
452 453 4.119442 ACAAACACACTAAGACGTGTCT 57.881 40.909 0.00 0.00 45.74 3.41
453 454 5.252969 ACAAACACACTAAGACGTGTCTA 57.747 39.130 2.42 0.00 45.74 2.59
454 455 5.839621 ACAAACACACTAAGACGTGTCTAT 58.160 37.500 2.42 0.00 45.74 1.98
455 456 6.973843 ACAAACACACTAAGACGTGTCTATA 58.026 36.000 2.42 0.00 45.74 1.31
456 457 7.600065 ACAAACACACTAAGACGTGTCTATAT 58.400 34.615 2.42 0.00 45.74 0.86
457 458 8.086522 ACAAACACACTAAGACGTGTCTATATT 58.913 33.333 2.42 0.00 45.74 1.28
458 459 8.373256 CAAACACACTAAGACGTGTCTATATTG 58.627 37.037 2.42 5.76 45.74 1.90
459 460 7.387119 ACACACTAAGACGTGTCTATATTGA 57.613 36.000 2.42 0.00 45.74 2.57
460 461 7.997482 ACACACTAAGACGTGTCTATATTGAT 58.003 34.615 2.42 0.00 45.74 2.57
461 462 8.467598 ACACACTAAGACGTGTCTATATTGATT 58.532 33.333 2.42 0.00 45.74 2.57
462 463 8.959058 CACACTAAGACGTGTCTATATTGATTC 58.041 37.037 2.42 0.00 45.74 2.52
463 464 8.683615 ACACTAAGACGTGTCTATATTGATTCA 58.316 33.333 2.42 0.00 44.32 2.57
464 465 9.684448 CACTAAGACGTGTCTATATTGATTCAT 57.316 33.333 2.42 0.00 39.39 2.57
511 512 9.923786 TTCAAAATATCGTATATTTGTGAACGG 57.076 29.630 18.16 0.00 36.08 4.44
512 513 9.315525 TCAAAATATCGTATATTTGTGAACGGA 57.684 29.630 11.21 0.00 36.08 4.69
513 514 9.580916 CAAAATATCGTATATTTGTGAACGGAG 57.419 33.333 11.21 0.00 36.08 4.63
514 515 9.537192 AAAATATCGTATATTTGTGAACGGAGA 57.463 29.630 11.21 0.00 36.08 3.71
515 516 8.744008 AATATCGTATATTTGTGAACGGAGAG 57.256 34.615 0.00 0.00 36.08 3.20
516 517 4.928601 TCGTATATTTGTGAACGGAGAGG 58.071 43.478 0.00 0.00 36.08 3.69
517 518 4.049186 CGTATATTTGTGAACGGAGAGGG 58.951 47.826 0.00 0.00 0.00 4.30
518 519 4.441079 CGTATATTTGTGAACGGAGAGGGT 60.441 45.833 0.00 0.00 0.00 4.34
519 520 5.221106 CGTATATTTGTGAACGGAGAGGGTA 60.221 44.000 0.00 0.00 0.00 3.69
520 521 5.888982 ATATTTGTGAACGGAGAGGGTAT 57.111 39.130 0.00 0.00 0.00 2.73
521 522 6.989155 ATATTTGTGAACGGAGAGGGTATA 57.011 37.500 0.00 0.00 0.00 1.47
522 523 4.460948 TTTGTGAACGGAGAGGGTATAC 57.539 45.455 0.00 0.00 0.00 1.47
523 524 3.090210 TGTGAACGGAGAGGGTATACA 57.910 47.619 5.01 0.00 0.00 2.29
524 525 3.433343 TGTGAACGGAGAGGGTATACAA 58.567 45.455 5.01 0.00 0.00 2.41
525 526 4.028131 TGTGAACGGAGAGGGTATACAAT 58.972 43.478 5.01 0.00 0.00 2.71
526 527 4.468510 TGTGAACGGAGAGGGTATACAATT 59.531 41.667 5.01 0.00 0.00 2.32
527 528 5.657745 TGTGAACGGAGAGGGTATACAATTA 59.342 40.000 5.01 0.00 0.00 1.40
528 529 6.154877 TGTGAACGGAGAGGGTATACAATTAA 59.845 38.462 5.01 0.00 0.00 1.40
529 530 7.043565 GTGAACGGAGAGGGTATACAATTAAA 58.956 38.462 5.01 0.00 0.00 1.52
530 531 7.010830 GTGAACGGAGAGGGTATACAATTAAAC 59.989 40.741 5.01 0.00 0.00 2.01
531 532 6.549433 ACGGAGAGGGTATACAATTAAACA 57.451 37.500 5.01 0.00 0.00 2.83
532 533 7.133133 ACGGAGAGGGTATACAATTAAACAT 57.867 36.000 5.01 0.00 0.00 2.71
533 534 6.990349 ACGGAGAGGGTATACAATTAAACATG 59.010 38.462 5.01 0.00 0.00 3.21
534 535 7.147620 ACGGAGAGGGTATACAATTAAACATGA 60.148 37.037 5.01 0.00 0.00 3.07
535 536 7.385205 CGGAGAGGGTATACAATTAAACATGAG 59.615 40.741 5.01 0.00 0.00 2.90
536 537 7.173390 GGAGAGGGTATACAATTAAACATGAGC 59.827 40.741 5.01 0.00 0.00 4.26
537 538 7.573710 AGAGGGTATACAATTAAACATGAGCA 58.426 34.615 5.01 0.00 0.00 4.26
538 539 8.052748 AGAGGGTATACAATTAAACATGAGCAA 58.947 33.333 5.01 0.00 0.00 3.91
539 540 8.588290 AGGGTATACAATTAAACATGAGCAAA 57.412 30.769 5.01 0.00 0.00 3.68
540 541 9.200817 AGGGTATACAATTAAACATGAGCAAAT 57.799 29.630 5.01 0.00 0.00 2.32
541 542 9.816354 GGGTATACAATTAAACATGAGCAAATT 57.184 29.630 5.01 0.00 0.00 1.82
545 546 7.656707 ACAATTAAACATGAGCAAATTGGTC 57.343 32.000 17.29 17.29 44.54 4.02
552 553 1.251251 GAGCAAATTGGTCAGCAGGT 58.749 50.000 18.93 0.00 43.79 4.00
553 554 0.963962 AGCAAATTGGTCAGCAGGTG 59.036 50.000 0.00 0.00 0.00 4.00
554 555 0.037975 GCAAATTGGTCAGCAGGTGG 60.038 55.000 0.00 0.00 0.00 4.61
555 556 1.331214 CAAATTGGTCAGCAGGTGGT 58.669 50.000 0.00 0.00 0.00 4.16
556 557 2.513753 CAAATTGGTCAGCAGGTGGTA 58.486 47.619 0.00 0.00 0.00 3.25
557 558 3.091545 CAAATTGGTCAGCAGGTGGTAT 58.908 45.455 0.00 0.00 0.00 2.73
558 559 2.717639 ATTGGTCAGCAGGTGGTATC 57.282 50.000 0.00 0.00 0.00 2.24
559 560 1.357137 TTGGTCAGCAGGTGGTATCA 58.643 50.000 0.00 0.00 0.00 2.15
560 561 1.357137 TGGTCAGCAGGTGGTATCAA 58.643 50.000 0.00 0.00 0.00 2.57
561 562 1.702401 TGGTCAGCAGGTGGTATCAAA 59.298 47.619 0.00 0.00 0.00 2.69
562 563 2.107378 TGGTCAGCAGGTGGTATCAAAA 59.893 45.455 0.00 0.00 0.00 2.44
563 564 3.153919 GGTCAGCAGGTGGTATCAAAAA 58.846 45.455 0.00 0.00 0.00 1.94
564 565 3.191371 GGTCAGCAGGTGGTATCAAAAAG 59.809 47.826 0.00 0.00 0.00 2.27
565 566 3.191371 GTCAGCAGGTGGTATCAAAAAGG 59.809 47.826 0.00 0.00 0.00 3.11
566 567 3.157087 CAGCAGGTGGTATCAAAAAGGT 58.843 45.455 0.00 0.00 0.00 3.50
567 568 3.573967 CAGCAGGTGGTATCAAAAAGGTT 59.426 43.478 0.00 0.00 0.00 3.50
568 569 4.039124 CAGCAGGTGGTATCAAAAAGGTTT 59.961 41.667 0.00 0.00 0.00 3.27
569 570 4.653801 AGCAGGTGGTATCAAAAAGGTTTT 59.346 37.500 0.00 0.00 0.00 2.43
570 571 5.130311 AGCAGGTGGTATCAAAAAGGTTTTT 59.870 36.000 0.00 0.00 40.75 1.94
595 596 3.120796 GGAAGTTCCCCAAAACCGT 57.879 52.632 11.17 0.00 0.00 4.83
596 597 1.405872 GGAAGTTCCCCAAAACCGTT 58.594 50.000 11.17 0.00 0.00 4.44
597 598 1.758280 GGAAGTTCCCCAAAACCGTTT 59.242 47.619 11.17 0.00 0.00 3.60
598 599 2.168936 GGAAGTTCCCCAAAACCGTTTT 59.831 45.455 11.17 3.29 0.00 2.43
599 600 3.369681 GGAAGTTCCCCAAAACCGTTTTT 60.370 43.478 11.17 0.00 35.15 1.94
846 847 2.159382 CATTTTACCCGTGAGCCAACT 58.841 47.619 0.00 0.00 0.00 3.16
884 885 3.382227 TGAATCTAGACGCGATACCCAAA 59.618 43.478 15.93 0.00 0.00 3.28
888 889 1.120530 AGACGCGATACCCAAATCCT 58.879 50.000 15.93 0.00 0.00 3.24
901 902 4.533311 ACCCAAATCCTCAAAAGCATCAAT 59.467 37.500 0.00 0.00 0.00 2.57
973 976 1.398390 GCCACTTCGCTATCAAACCAG 59.602 52.381 0.00 0.00 0.00 4.00
1271 1293 1.068541 GTTTGAGCGGGTTTAGCTTGG 60.069 52.381 0.00 0.00 46.13 3.61
1280 1302 3.181514 CGGGTTTAGCTTGGATTTGTACG 60.182 47.826 0.00 0.00 0.00 3.67
1281 1303 3.754850 GGGTTTAGCTTGGATTTGTACGT 59.245 43.478 0.00 0.00 0.00 3.57
1282 1304 4.937015 GGGTTTAGCTTGGATTTGTACGTA 59.063 41.667 0.00 0.00 0.00 3.57
1299 1464 4.820894 ACGTATAAGATAAGATGGGGCC 57.179 45.455 0.00 0.00 0.00 5.80
1327 1494 4.081642 GCTCTCTGGTGGAATTAGTGTGTA 60.082 45.833 0.00 0.00 0.00 2.90
1338 1505 8.132362 GTGGAATTAGTGTGTAATGTTTTGTGA 58.868 33.333 0.00 0.00 0.00 3.58
1340 1507 9.691362 GGAATTAGTGTGTAATGTTTTGTGATT 57.309 29.630 0.00 0.00 0.00 2.57
1570 1742 2.906389 AGAGCACATTGTTACTCCCTCA 59.094 45.455 11.28 0.00 0.00 3.86
1573 1745 3.838317 AGCACATTGTTACTCCCTCAGTA 59.162 43.478 0.00 0.00 36.43 2.74
1574 1746 4.286032 AGCACATTGTTACTCCCTCAGTAA 59.714 41.667 0.00 0.00 44.08 2.24
1588 1760 8.425703 ACTCCCTCAGTAAAGAAATATAAGAGC 58.574 37.037 0.00 0.00 31.37 4.09
1589 1761 8.319057 TCCCTCAGTAAAGAAATATAAGAGCA 57.681 34.615 0.00 0.00 0.00 4.26
1590 1762 8.938883 TCCCTCAGTAAAGAAATATAAGAGCAT 58.061 33.333 0.00 0.00 0.00 3.79
1601 1773 8.930760 AGAAATATAAGAGCATGATCTAAACGC 58.069 33.333 14.99 1.36 0.00 4.84
1602 1774 8.839310 AAATATAAGAGCATGATCTAAACGCT 57.161 30.769 14.99 0.00 35.14 5.07
1610 1782 8.472683 GAGCATGATCTAAACGCTCTTATATT 57.527 34.615 3.07 0.00 44.47 1.28
1612 1784 8.930760 AGCATGATCTAAACGCTCTTATATTTC 58.069 33.333 0.00 0.00 0.00 2.17
1619 1791 9.241317 TCTAAACGCTCTTATATTTCTTTACGG 57.759 33.333 0.00 0.00 0.00 4.02
1620 1792 9.241317 CTAAACGCTCTTATATTTCTTTACGGA 57.759 33.333 0.00 0.00 0.00 4.69
1621 1793 7.695869 AACGCTCTTATATTTCTTTACGGAG 57.304 36.000 0.00 0.00 0.00 4.63
1622 1794 6.214399 ACGCTCTTATATTTCTTTACGGAGG 58.786 40.000 0.00 0.00 0.00 4.30
1624 1796 6.583050 CGCTCTTATATTTCTTTACGGAGGAG 59.417 42.308 0.00 0.00 0.00 3.69
1625 1797 7.435305 GCTCTTATATTTCTTTACGGAGGAGT 58.565 38.462 0.00 0.00 0.00 3.85
1626 1798 8.574737 GCTCTTATATTTCTTTACGGAGGAGTA 58.425 37.037 0.00 0.00 0.00 2.59
1627 1799 9.896263 CTCTTATATTTCTTTACGGAGGAGTAC 57.104 37.037 0.00 0.00 0.00 2.73
1628 1800 9.638176 TCTTATATTTCTTTACGGAGGAGTACT 57.362 33.333 0.00 0.00 0.00 2.73
1630 1802 4.796038 TTTCTTTACGGAGGAGTACTGG 57.204 45.455 0.00 0.00 0.00 4.00
1631 1803 3.446442 TCTTTACGGAGGAGTACTGGT 57.554 47.619 0.00 0.00 0.00 4.00
1633 1805 4.154942 TCTTTACGGAGGAGTACTGGTTT 58.845 43.478 0.00 0.00 0.00 3.27
1634 1806 4.590222 TCTTTACGGAGGAGTACTGGTTTT 59.410 41.667 0.00 0.00 0.00 2.43
1635 1807 4.961438 TTACGGAGGAGTACTGGTTTTT 57.039 40.909 0.00 0.00 0.00 1.94
1675 1918 6.544650 ACGGAGGAGTACTAGTTATGATGAT 58.455 40.000 0.00 0.00 0.00 2.45
1697 1940 9.624373 ATGATGATATTTCATATTAGGAGGTGC 57.376 33.333 0.00 0.00 42.73 5.01
1705 1951 2.263895 ATTAGGAGGTGCTGGTGGTA 57.736 50.000 0.00 0.00 0.00 3.25
1738 1984 1.601914 GGTTGGCAGTTTAGCGGTTTG 60.602 52.381 0.00 0.00 34.64 2.93
1907 2153 6.437162 AGACATTGTGCTTAAATGTTACCCAT 59.563 34.615 11.69 0.00 45.81 4.00
1918 2164 8.610248 TTAAATGTTACCCATCATGTATACCG 57.390 34.615 0.00 0.00 31.75 4.02
2029 2280 3.980646 TGTTTGTCCCTCGAAACAATG 57.019 42.857 8.09 0.00 38.73 2.82
2041 2292 3.922240 TCGAAACAATGCTACGGTCTAAC 59.078 43.478 0.00 0.00 0.00 2.34
2062 2313 8.367911 TCTAACTACTGAATGAACTTGACACAT 58.632 33.333 0.00 0.00 0.00 3.21
2214 2465 2.632512 CCCATAGTTTGCACCCTTGTTT 59.367 45.455 0.00 0.00 0.00 2.83
2269 2520 2.420022 CCTTCAGCAACCGTTAATGGAG 59.580 50.000 20.84 12.71 0.00 3.86
2359 2610 9.716507 ACTGCTTATTTTTATTTACTGTATGCG 57.283 29.630 0.00 0.00 0.00 4.73
2511 2762 1.065854 CCTCCTTCAGGCTGGTAAGTG 60.066 57.143 15.73 6.41 34.56 3.16
2538 2789 7.219535 GCTGACATTTACTTTCTTACGATCGTA 59.780 37.037 23.54 23.54 0.00 3.43
2555 2806 5.455849 CGATCGTATTTCAGGCCTATTATCG 59.544 44.000 3.98 8.33 0.00 2.92
2582 2833 8.065473 TGTATGCACTTAATGAATTCATTGGT 57.935 30.769 33.94 28.23 45.34 3.67
2917 3168 7.609760 TGGTGTTGATGTATGTATTTCAGTC 57.390 36.000 0.00 0.00 0.00 3.51
2918 3169 6.597672 TGGTGTTGATGTATGTATTTCAGTCC 59.402 38.462 0.00 0.00 0.00 3.85
2919 3170 6.597672 GGTGTTGATGTATGTATTTCAGTCCA 59.402 38.462 0.00 0.00 0.00 4.02
2920 3171 7.201644 GGTGTTGATGTATGTATTTCAGTCCAG 60.202 40.741 0.00 0.00 0.00 3.86
2921 3172 7.334421 GTGTTGATGTATGTATTTCAGTCCAGT 59.666 37.037 0.00 0.00 0.00 4.00
2922 3173 7.334171 TGTTGATGTATGTATTTCAGTCCAGTG 59.666 37.037 0.00 0.00 0.00 3.66
2923 3174 6.946340 TGATGTATGTATTTCAGTCCAGTGT 58.054 36.000 0.00 0.00 0.00 3.55
2924 3175 7.394016 TGATGTATGTATTTCAGTCCAGTGTT 58.606 34.615 0.00 0.00 0.00 3.32
2925 3176 7.882791 TGATGTATGTATTTCAGTCCAGTGTTT 59.117 33.333 0.00 0.00 0.00 2.83
3027 3293 3.390311 AGATAGCTCATTCTCATGGTGCA 59.610 43.478 0.00 0.00 34.67 4.57
3070 3336 3.037851 TCATGTCTCCAGTGCTATCCT 57.962 47.619 0.00 0.00 0.00 3.24
3310 3577 9.113838 GTCATCTTTGTCATCACTAATAACCAT 57.886 33.333 0.00 0.00 0.00 3.55
3327 3594 5.796424 AACCATGCTGACTCTTTTGAATT 57.204 34.783 0.00 0.00 0.00 2.17
3397 3665 1.069513 TGTCTGTGTCCCTGGTAAACG 59.930 52.381 0.00 0.00 0.00 3.60
3768 4039 9.030301 GTTGTGATAAAATAACTTGTTTGCTGT 57.970 29.630 0.00 0.00 0.00 4.40
4107 4402 7.483307 TCTAATATGTTCTTGCATTTGCTTCC 58.517 34.615 3.94 0.00 42.66 3.46
4241 4536 4.773323 AAGCATTCTTTTGTACCTGCTC 57.227 40.909 0.00 0.00 38.91 4.26
4309 4604 9.123902 TCAATTTTATCATCCAACATACTCCAG 57.876 33.333 0.00 0.00 0.00 3.86
4350 4668 8.933807 CAAAGCTGATCCATTATCATACTAGTG 58.066 37.037 5.39 0.00 43.70 2.74
4534 4854 2.373169 TCTAGTACGGATATCGGTGGGT 59.627 50.000 22.34 11.15 44.45 4.51
4543 4863 3.775316 GGATATCGGTGGGTATTGAGGAT 59.225 47.826 0.00 0.00 0.00 3.24
4618 4938 9.664332 GCATAGATCATACAAAATCTGGACTAT 57.336 33.333 0.00 0.00 34.21 2.12
4710 5030 8.020819 TGCAACAGTAATAATAAACTTCTGCAC 58.979 33.333 0.00 0.00 36.52 4.57
4736 5056 2.559698 TTTCTGAAATGACGAGCCCA 57.440 45.000 0.00 0.00 0.00 5.36
4755 5075 2.031508 CCACGGTTGTATGTGTTGTTCC 60.032 50.000 0.00 0.00 34.28 3.62
4759 5079 3.751175 CGGTTGTATGTGTTGTTCCTCAT 59.249 43.478 0.00 0.00 0.00 2.90
4799 5119 2.613977 CCTGAGGCCAACTGACAAGTAG 60.614 54.545 5.01 0.00 34.77 2.57
4806 5126 3.004734 GCCAACTGACAAGTAGCAACATT 59.995 43.478 0.00 0.00 36.36 2.71
4825 5145 7.409661 GCAACATTCATAAACTTCACAACATCG 60.410 37.037 0.00 0.00 0.00 3.84
4827 5147 8.044060 ACATTCATAAACTTCACAACATCGAT 57.956 30.769 0.00 0.00 0.00 3.59
4897 5217 5.407407 TTTGTAGCTCAAGTAGGAAGGAG 57.593 43.478 0.00 0.00 37.35 3.69
4924 5244 1.682849 CCGTTGGTTGATGGGGAGA 59.317 57.895 0.00 0.00 0.00 3.71
5089 5425 7.375834 TGTGACGATTCTTTTGTAGTGTATCT 58.624 34.615 0.00 0.00 0.00 1.98
5198 5594 5.152097 TCGTGTACGAAGTTGATTTCTCTC 58.848 41.667 4.41 0.00 46.30 3.20
5302 5707 9.013229 TCTTATTTGTGTGAGCAATTTATCACT 57.987 29.630 16.74 3.72 44.90 3.41
5328 5734 2.878406 TGCTAGTGCCTTTTGTGTCTTC 59.122 45.455 0.00 0.00 38.71 2.87
5331 5737 1.021968 GTGCCTTTTGTGTCTTCGGT 58.978 50.000 0.00 0.00 0.00 4.69
5459 5866 7.640240 CACTTAACAACAGAAAGCTTGACTTAC 59.360 37.037 0.00 0.00 37.75 2.34
5586 5993 4.976116 TGATCTATCTATTTGCGTGTGACG 59.024 41.667 0.00 0.00 45.88 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 9.961265 CATGTTATGACGAAACTAGGAGTATTA 57.039 33.333 0.00 0.00 0.00 0.98
3 4 8.475639 ACATGTTATGACGAAACTAGGAGTATT 58.524 33.333 0.00 0.00 0.00 1.89
4 5 8.008513 ACATGTTATGACGAAACTAGGAGTAT 57.991 34.615 0.00 0.00 0.00 2.12
5 6 7.400599 ACATGTTATGACGAAACTAGGAGTA 57.599 36.000 0.00 0.00 0.00 2.59
6 7 6.282199 ACATGTTATGACGAAACTAGGAGT 57.718 37.500 0.00 0.00 0.00 3.85
7 8 6.811665 TCAACATGTTATGACGAAACTAGGAG 59.188 38.462 11.53 0.00 0.00 3.69
8 9 6.693466 TCAACATGTTATGACGAAACTAGGA 58.307 36.000 11.53 0.00 0.00 2.94
9 10 6.455646 GCTCAACATGTTATGACGAAACTAGG 60.456 42.308 11.53 0.00 0.00 3.02
10 11 6.311445 AGCTCAACATGTTATGACGAAACTAG 59.689 38.462 11.53 0.00 0.00 2.57
11 12 6.163476 AGCTCAACATGTTATGACGAAACTA 58.837 36.000 11.53 0.00 0.00 2.24
12 13 4.997395 AGCTCAACATGTTATGACGAAACT 59.003 37.500 11.53 2.07 0.00 2.66
13 14 5.283060 AGCTCAACATGTTATGACGAAAC 57.717 39.130 11.53 0.00 0.00 2.78
14 15 5.940192 AAGCTCAACATGTTATGACGAAA 57.060 34.783 11.53 0.00 0.00 3.46
15 16 5.940192 AAAGCTCAACATGTTATGACGAA 57.060 34.783 11.53 0.00 0.00 3.85
16 17 5.334802 CCAAAAGCTCAACATGTTATGACGA 60.335 40.000 11.53 3.04 0.00 4.20
17 18 4.853196 CCAAAAGCTCAACATGTTATGACG 59.147 41.667 11.53 0.00 0.00 4.35
18 19 5.772521 ACCAAAAGCTCAACATGTTATGAC 58.227 37.500 11.53 1.45 0.00 3.06
19 20 5.534278 TGACCAAAAGCTCAACATGTTATGA 59.466 36.000 11.53 5.36 0.00 2.15
20 21 5.771469 TGACCAAAAGCTCAACATGTTATG 58.229 37.500 11.53 8.11 0.00 1.90
21 22 6.594788 ATGACCAAAAGCTCAACATGTTAT 57.405 33.333 11.53 0.00 0.00 1.89
22 23 7.446931 TCTTATGACCAAAAGCTCAACATGTTA 59.553 33.333 11.53 0.00 0.00 2.41
23 24 4.942761 ATGACCAAAAGCTCAACATGTT 57.057 36.364 4.92 4.92 0.00 2.71
24 25 5.769662 TCTTATGACCAAAAGCTCAACATGT 59.230 36.000 0.00 0.00 0.00 3.21
25 26 6.088824 GTCTTATGACCAAAAGCTCAACATG 58.911 40.000 0.00 0.00 37.24 3.21
26 27 6.259550 GTCTTATGACCAAAAGCTCAACAT 57.740 37.500 0.00 0.00 37.24 2.71
27 28 5.689383 GTCTTATGACCAAAAGCTCAACA 57.311 39.130 0.00 0.00 37.24 3.33
49 50 9.543783 GGAGTATTAGATTAACAAACCACTAGG 57.456 37.037 0.00 0.00 42.21 3.02
52 53 8.265764 GGAGGAGTATTAGATTAACAAACCACT 58.734 37.037 0.00 0.00 0.00 4.00
53 54 8.044908 TGGAGGAGTATTAGATTAACAAACCAC 58.955 37.037 0.00 0.00 0.00 4.16
54 55 8.153221 TGGAGGAGTATTAGATTAACAAACCA 57.847 34.615 0.00 0.00 0.00 3.67
55 56 9.457436 TTTGGAGGAGTATTAGATTAACAAACC 57.543 33.333 0.00 0.00 0.00 3.27
65 66 9.542462 CGTCAATTAATTTGGAGGAGTATTAGA 57.458 33.333 0.00 0.00 35.92 2.10
66 67 8.283291 GCGTCAATTAATTTGGAGGAGTATTAG 58.717 37.037 10.68 0.00 35.92 1.73
67 68 7.771361 TGCGTCAATTAATTTGGAGGAGTATTA 59.229 33.333 10.68 0.00 35.92 0.98
68 69 6.601613 TGCGTCAATTAATTTGGAGGAGTATT 59.398 34.615 10.68 0.00 35.92 1.89
69 70 6.119536 TGCGTCAATTAATTTGGAGGAGTAT 58.880 36.000 10.68 0.00 35.92 2.12
70 71 5.492895 TGCGTCAATTAATTTGGAGGAGTA 58.507 37.500 10.68 0.00 35.92 2.59
71 72 4.331968 TGCGTCAATTAATTTGGAGGAGT 58.668 39.130 10.68 0.00 35.92 3.85
72 73 4.731773 GCTGCGTCAATTAATTTGGAGGAG 60.732 45.833 10.68 8.66 35.92 3.69
73 74 3.128589 GCTGCGTCAATTAATTTGGAGGA 59.871 43.478 10.68 0.00 35.92 3.71
74 75 3.129287 AGCTGCGTCAATTAATTTGGAGG 59.871 43.478 0.00 1.38 35.92 4.30
75 76 4.361451 AGCTGCGTCAATTAATTTGGAG 57.639 40.909 0.00 3.82 35.92 3.86
76 77 4.782019 AAGCTGCGTCAATTAATTTGGA 57.218 36.364 0.00 0.00 35.92 3.53
77 78 6.942886 TTAAAGCTGCGTCAATTAATTTGG 57.057 33.333 0.00 0.00 35.92 3.28
78 79 9.071221 TGTATTAAAGCTGCGTCAATTAATTTG 57.929 29.630 0.00 0.00 36.61 2.32
79 80 9.632807 TTGTATTAAAGCTGCGTCAATTAATTT 57.367 25.926 0.00 1.31 30.97 1.82
80 81 9.072294 GTTGTATTAAAGCTGCGTCAATTAATT 57.928 29.630 0.00 0.00 30.97 1.40
81 82 8.458843 AGTTGTATTAAAGCTGCGTCAATTAAT 58.541 29.630 0.00 0.00 32.59 1.40
82 83 7.812648 AGTTGTATTAAAGCTGCGTCAATTAA 58.187 30.769 0.00 0.00 0.00 1.40
83 84 7.372451 AGTTGTATTAAAGCTGCGTCAATTA 57.628 32.000 0.00 0.00 0.00 1.40
84 85 6.254281 AGTTGTATTAAAGCTGCGTCAATT 57.746 33.333 0.00 0.00 0.00 2.32
85 86 5.880054 AGTTGTATTAAAGCTGCGTCAAT 57.120 34.783 0.00 0.00 0.00 2.57
86 87 5.682943 AAGTTGTATTAAAGCTGCGTCAA 57.317 34.783 0.00 0.00 0.00 3.18
87 88 5.682943 AAAGTTGTATTAAAGCTGCGTCA 57.317 34.783 0.00 0.00 0.00 4.35
99 100 9.695155 AGGGTGCAAAGTATATAAAGTTGTATT 57.305 29.630 0.00 0.00 0.00 1.89
100 101 9.338622 GAGGGTGCAAAGTATATAAAGTTGTAT 57.661 33.333 0.00 0.00 0.00 2.29
101 102 7.771826 GGAGGGTGCAAAGTATATAAAGTTGTA 59.228 37.037 0.00 0.00 0.00 2.41
102 103 6.602009 GGAGGGTGCAAAGTATATAAAGTTGT 59.398 38.462 0.00 0.00 0.00 3.32
103 104 6.039382 GGGAGGGTGCAAAGTATATAAAGTTG 59.961 42.308 0.00 0.00 0.00 3.16
104 105 6.127101 GGGAGGGTGCAAAGTATATAAAGTT 58.873 40.000 0.00 0.00 0.00 2.66
105 106 5.192923 TGGGAGGGTGCAAAGTATATAAAGT 59.807 40.000 0.00 0.00 0.00 2.66
106 107 5.690865 TGGGAGGGTGCAAAGTATATAAAG 58.309 41.667 0.00 0.00 0.00 1.85
107 108 5.718801 TGGGAGGGTGCAAAGTATATAAA 57.281 39.130 0.00 0.00 0.00 1.40
108 109 5.512404 CGATGGGAGGGTGCAAAGTATATAA 60.512 44.000 0.00 0.00 0.00 0.98
109 110 4.020573 CGATGGGAGGGTGCAAAGTATATA 60.021 45.833 0.00 0.00 0.00 0.86
110 111 3.244561 CGATGGGAGGGTGCAAAGTATAT 60.245 47.826 0.00 0.00 0.00 0.86
111 112 2.104111 CGATGGGAGGGTGCAAAGTATA 59.896 50.000 0.00 0.00 0.00 1.47
112 113 1.134098 CGATGGGAGGGTGCAAAGTAT 60.134 52.381 0.00 0.00 0.00 2.12
113 114 0.251916 CGATGGGAGGGTGCAAAGTA 59.748 55.000 0.00 0.00 0.00 2.24
114 115 1.002134 CGATGGGAGGGTGCAAAGT 60.002 57.895 0.00 0.00 0.00 2.66
115 116 1.026718 GTCGATGGGAGGGTGCAAAG 61.027 60.000 0.00 0.00 0.00 2.77
116 117 1.002624 GTCGATGGGAGGGTGCAAA 60.003 57.895 0.00 0.00 0.00 3.68
117 118 1.918293 AGTCGATGGGAGGGTGCAA 60.918 57.895 0.00 0.00 0.00 4.08
118 119 2.284625 AGTCGATGGGAGGGTGCA 60.285 61.111 0.00 0.00 0.00 4.57
119 120 1.899437 TTCAGTCGATGGGAGGGTGC 61.899 60.000 0.00 0.00 0.00 5.01
120 121 0.613260 TTTCAGTCGATGGGAGGGTG 59.387 55.000 0.00 0.00 0.00 4.61
121 122 1.486726 GATTTCAGTCGATGGGAGGGT 59.513 52.381 0.00 0.00 0.00 4.34
122 123 1.765314 AGATTTCAGTCGATGGGAGGG 59.235 52.381 0.00 0.00 0.00 4.30
123 124 2.484417 CCAGATTTCAGTCGATGGGAGG 60.484 54.545 0.00 0.00 0.00 4.30
124 125 2.831333 CCAGATTTCAGTCGATGGGAG 58.169 52.381 0.00 0.00 0.00 4.30
125 126 2.988010 CCAGATTTCAGTCGATGGGA 57.012 50.000 0.00 0.00 0.00 4.37
126 127 1.959042 CCCAGATTTCAGTCGATGGG 58.041 55.000 2.20 2.20 41.35 4.00
127 128 2.939103 GTTCCCAGATTTCAGTCGATGG 59.061 50.000 0.00 0.00 0.00 3.51
128 129 3.372206 GTGTTCCCAGATTTCAGTCGATG 59.628 47.826 0.00 0.00 0.00 3.84
129 130 3.600388 GTGTTCCCAGATTTCAGTCGAT 58.400 45.455 0.00 0.00 0.00 3.59
130 131 2.609491 CGTGTTCCCAGATTTCAGTCGA 60.609 50.000 0.00 0.00 0.00 4.20
131 132 1.726791 CGTGTTCCCAGATTTCAGTCG 59.273 52.381 0.00 0.00 0.00 4.18
132 133 3.040147 TCGTGTTCCCAGATTTCAGTC 57.960 47.619 0.00 0.00 0.00 3.51
133 134 3.703001 ATCGTGTTCCCAGATTTCAGT 57.297 42.857 0.00 0.00 0.00 3.41
134 135 4.503910 TGTATCGTGTTCCCAGATTTCAG 58.496 43.478 0.00 0.00 0.00 3.02
135 136 4.545208 TGTATCGTGTTCCCAGATTTCA 57.455 40.909 0.00 0.00 0.00 2.69
136 137 5.873179 TTTGTATCGTGTTCCCAGATTTC 57.127 39.130 0.00 0.00 0.00 2.17
137 138 6.208599 ACATTTTGTATCGTGTTCCCAGATTT 59.791 34.615 0.00 0.00 0.00 2.17
138 139 5.710099 ACATTTTGTATCGTGTTCCCAGATT 59.290 36.000 0.00 0.00 0.00 2.40
139 140 5.253330 ACATTTTGTATCGTGTTCCCAGAT 58.747 37.500 0.00 0.00 0.00 2.90
140 141 4.647611 ACATTTTGTATCGTGTTCCCAGA 58.352 39.130 0.00 0.00 0.00 3.86
141 142 5.064707 CCTACATTTTGTATCGTGTTCCCAG 59.935 44.000 0.00 0.00 31.66 4.45
142 143 4.938832 CCTACATTTTGTATCGTGTTCCCA 59.061 41.667 0.00 0.00 31.66 4.37
143 144 5.180271 TCCTACATTTTGTATCGTGTTCCC 58.820 41.667 0.00 0.00 31.66 3.97
144 145 6.730960 TTCCTACATTTTGTATCGTGTTCC 57.269 37.500 0.00 0.00 31.66 3.62
145 146 8.287503 AGTTTTCCTACATTTTGTATCGTGTTC 58.712 33.333 0.00 0.00 31.66 3.18
146 147 8.161699 AGTTTTCCTACATTTTGTATCGTGTT 57.838 30.769 0.00 0.00 31.66 3.32
147 148 7.739498 AGTTTTCCTACATTTTGTATCGTGT 57.261 32.000 0.00 0.00 31.66 4.49
148 149 7.060633 GCAAGTTTTCCTACATTTTGTATCGTG 59.939 37.037 0.00 0.00 31.66 4.35
149 150 7.081976 GCAAGTTTTCCTACATTTTGTATCGT 58.918 34.615 0.00 0.00 31.66 3.73
150 151 7.081349 TGCAAGTTTTCCTACATTTTGTATCG 58.919 34.615 0.00 0.00 31.66 2.92
151 152 8.863049 CATGCAAGTTTTCCTACATTTTGTATC 58.137 33.333 0.00 0.00 31.66 2.24
152 153 7.818930 CCATGCAAGTTTTCCTACATTTTGTAT 59.181 33.333 0.00 0.00 31.66 2.29
153 154 7.151308 CCATGCAAGTTTTCCTACATTTTGTA 58.849 34.615 0.00 0.00 0.00 2.41
154 155 5.990996 CCATGCAAGTTTTCCTACATTTTGT 59.009 36.000 0.00 0.00 0.00 2.83
155 156 5.106987 GCCATGCAAGTTTTCCTACATTTTG 60.107 40.000 0.00 0.00 0.00 2.44
156 157 4.996758 GCCATGCAAGTTTTCCTACATTTT 59.003 37.500 0.00 0.00 0.00 1.82
157 158 4.284234 AGCCATGCAAGTTTTCCTACATTT 59.716 37.500 0.00 0.00 0.00 2.32
158 159 3.834231 AGCCATGCAAGTTTTCCTACATT 59.166 39.130 0.00 0.00 0.00 2.71
159 160 3.194116 CAGCCATGCAAGTTTTCCTACAT 59.806 43.478 0.00 0.00 0.00 2.29
160 161 2.557924 CAGCCATGCAAGTTTTCCTACA 59.442 45.455 0.00 0.00 0.00 2.74
161 162 3.221964 CAGCCATGCAAGTTTTCCTAC 57.778 47.619 0.00 0.00 0.00 3.18
180 181 1.810151 GTGATAAACCCTGCTTTCGCA 59.190 47.619 0.00 0.00 45.60 5.10
181 182 1.132453 GGTGATAAACCCTGCTTTCGC 59.868 52.381 0.00 0.00 44.02 4.70
192 193 0.539986 TCCGCTCAGGGGTGATAAAC 59.460 55.000 7.81 0.00 41.52 2.01
193 194 0.830648 CTCCGCTCAGGGGTGATAAA 59.169 55.000 7.81 0.00 41.52 1.40
194 195 1.048724 CCTCCGCTCAGGGGTGATAA 61.049 60.000 11.31 0.00 39.52 1.75
195 196 1.457643 CCTCCGCTCAGGGGTGATA 60.458 63.158 11.31 0.00 39.52 2.15
196 197 2.765807 CCTCCGCTCAGGGGTGAT 60.766 66.667 11.31 0.00 39.52 3.06
201 202 1.971505 TTATGTGCCTCCGCTCAGGG 61.972 60.000 0.32 0.00 41.48 4.45
202 203 0.107456 ATTATGTGCCTCCGCTCAGG 59.893 55.000 0.00 0.00 41.48 3.86
203 204 1.959042 AATTATGTGCCTCCGCTCAG 58.041 50.000 0.00 0.00 41.48 3.35
204 205 2.016318 CAAATTATGTGCCTCCGCTCA 58.984 47.619 0.00 0.00 42.31 4.26
205 206 2.017049 ACAAATTATGTGCCTCCGCTC 58.983 47.619 0.00 0.00 41.93 5.03
206 207 2.128771 ACAAATTATGTGCCTCCGCT 57.871 45.000 0.00 0.00 41.93 5.52
215 216 5.336690 CCTGCTAACAAGGCACAAATTATGT 60.337 40.000 0.00 0.00 45.34 2.29
216 217 5.104374 CCTGCTAACAAGGCACAAATTATG 58.896 41.667 0.00 0.00 35.71 1.90
217 218 4.772100 ACCTGCTAACAAGGCACAAATTAT 59.228 37.500 0.00 0.00 35.71 1.28
218 219 4.148838 ACCTGCTAACAAGGCACAAATTA 58.851 39.130 0.00 0.00 35.71 1.40
219 220 2.965147 ACCTGCTAACAAGGCACAAATT 59.035 40.909 0.00 0.00 35.71 1.82
220 221 2.558359 GACCTGCTAACAAGGCACAAAT 59.442 45.455 0.00 0.00 35.71 2.32
221 222 1.953686 GACCTGCTAACAAGGCACAAA 59.046 47.619 0.00 0.00 35.71 2.83
222 223 1.604604 GACCTGCTAACAAGGCACAA 58.395 50.000 0.00 0.00 35.71 3.33
223 224 0.602638 CGACCTGCTAACAAGGCACA 60.603 55.000 0.00 0.00 35.71 4.57
224 225 1.912371 GCGACCTGCTAACAAGGCAC 61.912 60.000 0.00 0.00 41.73 5.01
225 226 1.671054 GCGACCTGCTAACAAGGCA 60.671 57.895 0.00 0.00 41.73 4.75
226 227 1.234615 TTGCGACCTGCTAACAAGGC 61.235 55.000 0.00 0.00 46.63 4.35
227 228 0.517316 GTTGCGACCTGCTAACAAGG 59.483 55.000 0.00 0.00 46.63 3.61
228 229 0.163788 CGTTGCGACCTGCTAACAAG 59.836 55.000 0.00 0.00 46.63 3.16
229 230 1.225376 CCGTTGCGACCTGCTAACAA 61.225 55.000 0.00 0.00 46.63 2.83
230 231 1.666553 CCGTTGCGACCTGCTAACA 60.667 57.895 0.00 0.00 46.63 2.41
231 232 2.388232 CCCGTTGCGACCTGCTAAC 61.388 63.158 0.00 0.00 46.63 2.34
232 233 2.047655 CCCGTTGCGACCTGCTAA 60.048 61.111 0.00 0.00 46.63 3.09
233 234 4.077184 CCCCGTTGCGACCTGCTA 62.077 66.667 0.00 0.00 46.63 3.49
235 236 4.778143 ATCCCCGTTGCGACCTGC 62.778 66.667 0.00 0.00 46.70 4.85
236 237 2.819595 CATCCCCGTTGCGACCTG 60.820 66.667 0.00 0.00 0.00 4.00
237 238 4.778143 GCATCCCCGTTGCGACCT 62.778 66.667 0.00 0.00 0.00 3.85
239 240 3.799755 GTGCATCCCCGTTGCGAC 61.800 66.667 0.00 0.00 43.10 5.19
240 241 2.245438 TATGTGCATCCCCGTTGCGA 62.245 55.000 0.00 0.00 43.10 5.10
241 242 1.165907 ATATGTGCATCCCCGTTGCG 61.166 55.000 0.00 0.00 43.10 4.85
242 243 1.890876 TATATGTGCATCCCCGTTGC 58.109 50.000 0.00 0.00 40.55 4.17
243 244 4.133820 TCTTTATATGTGCATCCCCGTTG 58.866 43.478 0.00 0.00 0.00 4.10
244 245 4.431416 TCTTTATATGTGCATCCCCGTT 57.569 40.909 0.00 0.00 0.00 4.44
245 246 4.431416 TTCTTTATATGTGCATCCCCGT 57.569 40.909 0.00 0.00 0.00 5.28
246 247 7.336679 TCATTATTCTTTATATGTGCATCCCCG 59.663 37.037 0.00 0.00 0.00 5.73
247 248 8.579850 TCATTATTCTTTATATGTGCATCCCC 57.420 34.615 0.00 0.00 0.00 4.81
262 263 9.396022 ACACTTCGTTTCCATATCATTATTCTT 57.604 29.630 0.00 0.00 0.00 2.52
263 264 8.964476 ACACTTCGTTTCCATATCATTATTCT 57.036 30.769 0.00 0.00 0.00 2.40
267 268 9.607988 ACATAACACTTCGTTTCCATATCATTA 57.392 29.630 0.00 0.00 39.14 1.90
268 269 8.506168 ACATAACACTTCGTTTCCATATCATT 57.494 30.769 0.00 0.00 39.14 2.57
269 270 8.506168 AACATAACACTTCGTTTCCATATCAT 57.494 30.769 0.00 0.00 39.14 2.45
270 271 7.915293 AACATAACACTTCGTTTCCATATCA 57.085 32.000 0.00 0.00 39.14 2.15
275 276 9.275398 AGTAATTAACATAACACTTCGTTTCCA 57.725 29.630 0.00 0.00 39.14 3.53
276 277 9.750882 GAGTAATTAACATAACACTTCGTTTCC 57.249 33.333 0.00 0.00 39.14 3.13
277 278 9.750882 GGAGTAATTAACATAACACTTCGTTTC 57.249 33.333 0.00 0.00 39.14 2.78
278 279 8.724229 GGGAGTAATTAACATAACACTTCGTTT 58.276 33.333 0.00 0.00 39.14 3.60
279 280 8.098912 AGGGAGTAATTAACATAACACTTCGTT 58.901 33.333 0.00 0.00 41.91 3.85
280 281 7.618137 AGGGAGTAATTAACATAACACTTCGT 58.382 34.615 0.00 0.00 0.00 3.85
281 282 7.224167 GGAGGGAGTAATTAACATAACACTTCG 59.776 40.741 0.00 0.00 0.00 3.79
282 283 8.044908 TGGAGGGAGTAATTAACATAACACTTC 58.955 37.037 0.00 0.00 0.00 3.01
283 284 7.924541 TGGAGGGAGTAATTAACATAACACTT 58.075 34.615 0.00 0.00 0.00 3.16
284 285 7.504926 TGGAGGGAGTAATTAACATAACACT 57.495 36.000 0.00 0.00 0.00 3.55
285 286 8.747538 ATTGGAGGGAGTAATTAACATAACAC 57.252 34.615 0.00 0.00 0.00 3.32
286 287 8.553153 TGATTGGAGGGAGTAATTAACATAACA 58.447 33.333 0.00 0.00 0.00 2.41
287 288 8.837389 GTGATTGGAGGGAGTAATTAACATAAC 58.163 37.037 0.00 0.00 0.00 1.89
288 289 8.553153 TGTGATTGGAGGGAGTAATTAACATAA 58.447 33.333 0.00 0.00 0.00 1.90
289 290 8.096621 TGTGATTGGAGGGAGTAATTAACATA 57.903 34.615 0.00 0.00 0.00 2.29
290 291 6.969043 TGTGATTGGAGGGAGTAATTAACAT 58.031 36.000 0.00 0.00 0.00 2.71
291 292 6.214615 TCTGTGATTGGAGGGAGTAATTAACA 59.785 38.462 0.00 0.00 0.00 2.41
292 293 6.650120 TCTGTGATTGGAGGGAGTAATTAAC 58.350 40.000 0.00 0.00 0.00 2.01
293 294 6.884472 TCTGTGATTGGAGGGAGTAATTAA 57.116 37.500 0.00 0.00 0.00 1.40
294 295 8.742125 ATATCTGTGATTGGAGGGAGTAATTA 57.258 34.615 0.00 0.00 0.00 1.40
295 296 5.983333 ATCTGTGATTGGAGGGAGTAATT 57.017 39.130 0.00 0.00 0.00 1.40
296 297 8.742125 TTATATCTGTGATTGGAGGGAGTAAT 57.258 34.615 0.00 0.00 0.00 1.89
297 298 8.010697 TCTTATATCTGTGATTGGAGGGAGTAA 58.989 37.037 0.00 0.00 0.00 2.24
298 299 7.535738 TCTTATATCTGTGATTGGAGGGAGTA 58.464 38.462 0.00 0.00 0.00 2.59
299 300 6.385443 TCTTATATCTGTGATTGGAGGGAGT 58.615 40.000 0.00 0.00 0.00 3.85
300 301 6.924913 TCTTATATCTGTGATTGGAGGGAG 57.075 41.667 0.00 0.00 0.00 4.30
301 302 6.789457 ACATCTTATATCTGTGATTGGAGGGA 59.211 38.462 0.00 0.00 0.00 4.20
302 303 7.013823 ACATCTTATATCTGTGATTGGAGGG 57.986 40.000 0.00 0.00 0.00 4.30
303 304 8.915057 AAACATCTTATATCTGTGATTGGAGG 57.085 34.615 0.00 0.00 0.00 4.30
344 345 9.895138 ATGGCTAGCTTTATTGAAAATCAAAAT 57.105 25.926 15.72 0.00 40.12 1.82
345 346 9.153721 CATGGCTAGCTTTATTGAAAATCAAAA 57.846 29.630 15.72 0.00 40.12 2.44
346 347 8.530311 TCATGGCTAGCTTTATTGAAAATCAAA 58.470 29.630 15.72 0.00 40.12 2.69
347 348 8.065473 TCATGGCTAGCTTTATTGAAAATCAA 57.935 30.769 15.72 0.00 41.09 2.57
348 349 7.643569 TCATGGCTAGCTTTATTGAAAATCA 57.356 32.000 15.72 0.00 0.00 2.57
349 350 8.139989 ACATCATGGCTAGCTTTATTGAAAATC 58.860 33.333 15.72 0.00 0.00 2.17
350 351 8.015185 ACATCATGGCTAGCTTTATTGAAAAT 57.985 30.769 15.72 0.00 0.00 1.82
351 352 7.408756 ACATCATGGCTAGCTTTATTGAAAA 57.591 32.000 15.72 0.00 0.00 2.29
352 353 6.039717 GGACATCATGGCTAGCTTTATTGAAA 59.960 38.462 15.72 0.00 0.00 2.69
353 354 5.532406 GGACATCATGGCTAGCTTTATTGAA 59.468 40.000 15.72 0.00 0.00 2.69
354 355 5.065914 GGACATCATGGCTAGCTTTATTGA 58.934 41.667 15.72 10.72 0.00 2.57
355 356 5.068636 AGGACATCATGGCTAGCTTTATTG 58.931 41.667 15.72 9.91 0.00 1.90
356 357 5.316158 AGGACATCATGGCTAGCTTTATT 57.684 39.130 15.72 0.00 0.00 1.40
357 358 4.989875 AGGACATCATGGCTAGCTTTAT 57.010 40.909 15.72 4.31 0.00 1.40
358 359 4.444876 GGAAGGACATCATGGCTAGCTTTA 60.445 45.833 15.72 1.83 0.00 1.85
359 360 3.549794 GAAGGACATCATGGCTAGCTTT 58.450 45.455 15.72 0.00 0.00 3.51
360 361 2.158696 GGAAGGACATCATGGCTAGCTT 60.159 50.000 15.72 0.00 0.00 3.74
361 362 1.419387 GGAAGGACATCATGGCTAGCT 59.581 52.381 15.72 0.00 0.00 3.32
362 363 1.419387 AGGAAGGACATCATGGCTAGC 59.581 52.381 6.04 6.04 0.00 3.42
363 364 4.963318 TTAGGAAGGACATCATGGCTAG 57.037 45.455 0.00 0.00 0.00 3.42
364 365 5.708736 TTTTAGGAAGGACATCATGGCTA 57.291 39.130 0.00 0.00 0.00 3.93
365 366 4.591321 TTTTAGGAAGGACATCATGGCT 57.409 40.909 0.00 0.00 0.00 4.75
394 395 9.784680 CAGTCTGTATGTAGTCTACGTTAAAAT 57.215 33.333 10.00 0.00 0.00 1.82
395 396 9.002600 TCAGTCTGTATGTAGTCTACGTTAAAA 57.997 33.333 10.00 0.00 0.00 1.52
396 397 8.552083 TCAGTCTGTATGTAGTCTACGTTAAA 57.448 34.615 10.00 0.00 0.00 1.52
397 398 8.552083 TTCAGTCTGTATGTAGTCTACGTTAA 57.448 34.615 10.00 0.00 0.00 2.01
398 399 8.552083 TTTCAGTCTGTATGTAGTCTACGTTA 57.448 34.615 10.00 0.00 0.00 3.18
399 400 7.444629 TTTCAGTCTGTATGTAGTCTACGTT 57.555 36.000 10.00 0.78 0.00 3.99
400 401 7.627298 ATTTCAGTCTGTATGTAGTCTACGT 57.373 36.000 9.65 9.65 0.00 3.57
401 402 9.653067 CTTATTTCAGTCTGTATGTAGTCTACG 57.347 37.037 5.55 0.00 0.00 3.51
402 403 9.453325 GCTTATTTCAGTCTGTATGTAGTCTAC 57.547 37.037 2.81 2.81 0.00 2.59
403 404 8.343366 CGCTTATTTCAGTCTGTATGTAGTCTA 58.657 37.037 0.00 0.00 0.00 2.59
404 405 7.067129 TCGCTTATTTCAGTCTGTATGTAGTCT 59.933 37.037 0.00 0.00 0.00 3.24
405 406 7.194278 TCGCTTATTTCAGTCTGTATGTAGTC 58.806 38.462 0.00 0.00 0.00 2.59
406 407 7.096884 TCGCTTATTTCAGTCTGTATGTAGT 57.903 36.000 0.00 0.00 0.00 2.73
407 408 7.488150 TGTTCGCTTATTTCAGTCTGTATGTAG 59.512 37.037 0.00 0.00 0.00 2.74
408 409 7.317390 TGTTCGCTTATTTCAGTCTGTATGTA 58.683 34.615 0.00 0.00 0.00 2.29
409 410 6.163476 TGTTCGCTTATTTCAGTCTGTATGT 58.837 36.000 0.00 0.00 0.00 2.29
410 411 6.647212 TGTTCGCTTATTTCAGTCTGTATG 57.353 37.500 0.00 0.00 0.00 2.39
411 412 7.172532 TGTTTGTTCGCTTATTTCAGTCTGTAT 59.827 33.333 0.00 0.00 0.00 2.29
412 413 6.480651 TGTTTGTTCGCTTATTTCAGTCTGTA 59.519 34.615 0.00 0.00 0.00 2.74
413 414 5.295787 TGTTTGTTCGCTTATTTCAGTCTGT 59.704 36.000 0.00 0.00 0.00 3.41
414 415 5.621228 GTGTTTGTTCGCTTATTTCAGTCTG 59.379 40.000 0.00 0.00 0.00 3.51
415 416 5.295787 TGTGTTTGTTCGCTTATTTCAGTCT 59.704 36.000 0.00 0.00 0.00 3.24
416 417 5.395486 GTGTGTTTGTTCGCTTATTTCAGTC 59.605 40.000 0.00 0.00 0.00 3.51
417 418 5.065988 AGTGTGTTTGTTCGCTTATTTCAGT 59.934 36.000 0.00 0.00 0.00 3.41
418 419 5.510671 AGTGTGTTTGTTCGCTTATTTCAG 58.489 37.500 0.00 0.00 0.00 3.02
419 420 5.493133 AGTGTGTTTGTTCGCTTATTTCA 57.507 34.783 0.00 0.00 0.00 2.69
420 421 7.320560 GTCTTAGTGTGTTTGTTCGCTTATTTC 59.679 37.037 0.00 0.00 0.00 2.17
421 422 7.130269 GTCTTAGTGTGTTTGTTCGCTTATTT 58.870 34.615 0.00 0.00 0.00 1.40
422 423 6.563381 CGTCTTAGTGTGTTTGTTCGCTTATT 60.563 38.462 0.00 0.00 0.00 1.40
423 424 5.107607 CGTCTTAGTGTGTTTGTTCGCTTAT 60.108 40.000 0.00 0.00 0.00 1.73
424 425 4.207635 CGTCTTAGTGTGTTTGTTCGCTTA 59.792 41.667 0.00 0.00 0.00 3.09
425 426 3.000925 CGTCTTAGTGTGTTTGTTCGCTT 59.999 43.478 0.00 0.00 0.00 4.68
426 427 2.538449 CGTCTTAGTGTGTTTGTTCGCT 59.462 45.455 0.00 0.00 0.00 4.93
427 428 2.283351 ACGTCTTAGTGTGTTTGTTCGC 59.717 45.455 0.00 0.00 0.00 4.70
428 429 3.845683 CACGTCTTAGTGTGTTTGTTCG 58.154 45.455 0.00 0.00 37.35 3.95
438 439 9.684448 ATGAATCAATATAGACACGTCTTAGTG 57.316 33.333 4.79 7.51 46.83 2.74
485 486 9.923786 CCGTTCACAAATATACGATATTTTGAA 57.076 29.630 18.16 18.16 36.16 2.69
486 487 9.315525 TCCGTTCACAAATATACGATATTTTGA 57.684 29.630 10.81 12.31 36.16 2.69
487 488 9.580916 CTCCGTTCACAAATATACGATATTTTG 57.419 33.333 8.97 6.95 36.16 2.44
488 489 9.537192 TCTCCGTTCACAAATATACGATATTTT 57.463 29.630 8.97 2.33 36.16 1.82
489 490 9.193133 CTCTCCGTTCACAAATATACGATATTT 57.807 33.333 0.00 0.00 36.16 1.40
490 491 7.813148 CCTCTCCGTTCACAAATATACGATATT 59.187 37.037 0.00 0.00 36.16 1.28
491 492 7.313646 CCTCTCCGTTCACAAATATACGATAT 58.686 38.462 0.00 0.00 36.16 1.63
492 493 6.294342 CCCTCTCCGTTCACAAATATACGATA 60.294 42.308 0.00 0.00 36.16 2.92
493 494 5.509163 CCCTCTCCGTTCACAAATATACGAT 60.509 44.000 0.00 0.00 36.16 3.73
494 495 4.202080 CCCTCTCCGTTCACAAATATACGA 60.202 45.833 0.00 0.00 36.16 3.43
495 496 4.049186 CCCTCTCCGTTCACAAATATACG 58.951 47.826 0.00 0.00 0.00 3.06
496 497 5.019785 ACCCTCTCCGTTCACAAATATAC 57.980 43.478 0.00 0.00 0.00 1.47
497 498 6.989155 ATACCCTCTCCGTTCACAAATATA 57.011 37.500 0.00 0.00 0.00 0.86
498 499 5.888982 ATACCCTCTCCGTTCACAAATAT 57.111 39.130 0.00 0.00 0.00 1.28
499 500 5.657745 TGTATACCCTCTCCGTTCACAAATA 59.342 40.000 0.00 0.00 0.00 1.40
500 501 4.468510 TGTATACCCTCTCCGTTCACAAAT 59.531 41.667 0.00 0.00 0.00 2.32
501 502 3.833650 TGTATACCCTCTCCGTTCACAAA 59.166 43.478 0.00 0.00 0.00 2.83
502 503 3.433343 TGTATACCCTCTCCGTTCACAA 58.567 45.455 0.00 0.00 0.00 3.33
503 504 3.090210 TGTATACCCTCTCCGTTCACA 57.910 47.619 0.00 0.00 0.00 3.58
504 505 4.667519 ATTGTATACCCTCTCCGTTCAC 57.332 45.455 0.00 0.00 0.00 3.18
505 506 6.795144 TTAATTGTATACCCTCTCCGTTCA 57.205 37.500 0.00 0.00 0.00 3.18
506 507 7.043565 TGTTTAATTGTATACCCTCTCCGTTC 58.956 38.462 0.00 0.00 0.00 3.95
507 508 6.949715 TGTTTAATTGTATACCCTCTCCGTT 58.050 36.000 0.00 0.00 0.00 4.44
508 509 6.549433 TGTTTAATTGTATACCCTCTCCGT 57.451 37.500 0.00 0.00 0.00 4.69
509 510 7.214381 TCATGTTTAATTGTATACCCTCTCCG 58.786 38.462 0.00 0.00 0.00 4.63
510 511 7.173390 GCTCATGTTTAATTGTATACCCTCTCC 59.827 40.741 0.00 0.00 0.00 3.71
511 512 7.715249 TGCTCATGTTTAATTGTATACCCTCTC 59.285 37.037 0.00 0.00 0.00 3.20
512 513 7.573710 TGCTCATGTTTAATTGTATACCCTCT 58.426 34.615 0.00 0.00 0.00 3.69
513 514 7.801716 TGCTCATGTTTAATTGTATACCCTC 57.198 36.000 0.00 0.00 0.00 4.30
514 515 8.588290 TTTGCTCATGTTTAATTGTATACCCT 57.412 30.769 0.00 0.00 0.00 4.34
515 516 9.816354 AATTTGCTCATGTTTAATTGTATACCC 57.184 29.630 0.00 0.00 0.00 3.69
519 520 9.369904 GACCAATTTGCTCATGTTTAATTGTAT 57.630 29.630 16.37 9.48 35.48 2.29
520 521 8.363390 TGACCAATTTGCTCATGTTTAATTGTA 58.637 29.630 16.37 7.00 35.48 2.41
521 522 7.215789 TGACCAATTTGCTCATGTTTAATTGT 58.784 30.769 16.37 9.69 35.48 2.71
522 523 7.622672 GCTGACCAATTTGCTCATGTTTAATTG 60.623 37.037 13.40 13.40 36.46 2.32
523 524 6.369615 GCTGACCAATTTGCTCATGTTTAATT 59.630 34.615 0.00 0.00 0.00 1.40
524 525 5.870978 GCTGACCAATTTGCTCATGTTTAAT 59.129 36.000 0.00 0.00 0.00 1.40
525 526 5.221402 TGCTGACCAATTTGCTCATGTTTAA 60.221 36.000 0.00 0.00 0.00 1.52
526 527 4.280425 TGCTGACCAATTTGCTCATGTTTA 59.720 37.500 0.00 0.00 0.00 2.01
527 528 3.069872 TGCTGACCAATTTGCTCATGTTT 59.930 39.130 0.00 0.00 0.00 2.83
528 529 2.629137 TGCTGACCAATTTGCTCATGTT 59.371 40.909 0.00 0.00 0.00 2.71
529 530 2.230508 CTGCTGACCAATTTGCTCATGT 59.769 45.455 0.00 0.00 0.00 3.21
530 531 2.416836 CCTGCTGACCAATTTGCTCATG 60.417 50.000 0.00 0.00 0.00 3.07
531 532 1.822990 CCTGCTGACCAATTTGCTCAT 59.177 47.619 0.00 0.00 0.00 2.90
532 533 1.250328 CCTGCTGACCAATTTGCTCA 58.750 50.000 0.00 0.00 0.00 4.26
533 534 1.068055 CACCTGCTGACCAATTTGCTC 60.068 52.381 0.00 0.00 0.00 4.26
534 535 0.963962 CACCTGCTGACCAATTTGCT 59.036 50.000 0.00 0.00 0.00 3.91
535 536 0.037975 CCACCTGCTGACCAATTTGC 60.038 55.000 0.00 0.00 0.00 3.68
536 537 1.331214 ACCACCTGCTGACCAATTTG 58.669 50.000 0.00 0.00 0.00 2.32
537 538 2.969821 TACCACCTGCTGACCAATTT 57.030 45.000 0.00 0.00 0.00 1.82
538 539 2.308570 TGATACCACCTGCTGACCAATT 59.691 45.455 0.00 0.00 0.00 2.32
539 540 1.915489 TGATACCACCTGCTGACCAAT 59.085 47.619 0.00 0.00 0.00 3.16
540 541 1.357137 TGATACCACCTGCTGACCAA 58.643 50.000 0.00 0.00 0.00 3.67
541 542 1.357137 TTGATACCACCTGCTGACCA 58.643 50.000 0.00 0.00 0.00 4.02
542 543 2.489938 TTTGATACCACCTGCTGACC 57.510 50.000 0.00 0.00 0.00 4.02
543 544 3.191371 CCTTTTTGATACCACCTGCTGAC 59.809 47.826 0.00 0.00 0.00 3.51
544 545 3.181434 ACCTTTTTGATACCACCTGCTGA 60.181 43.478 0.00 0.00 0.00 4.26
545 546 3.157087 ACCTTTTTGATACCACCTGCTG 58.843 45.455 0.00 0.00 0.00 4.41
546 547 3.525800 ACCTTTTTGATACCACCTGCT 57.474 42.857 0.00 0.00 0.00 4.24
547 548 4.600692 AAACCTTTTTGATACCACCTGC 57.399 40.909 0.00 0.00 0.00 4.85
576 577 6.437109 AAAAACGGTTTTGGGGAACTTCCC 62.437 45.833 18.69 17.79 41.54 3.97
577 578 1.405872 AACGGTTTTGGGGAACTTCC 58.594 50.000 0.00 0.00 35.23 3.46
578 579 3.530265 AAAACGGTTTTGGGGAACTTC 57.470 42.857 17.42 0.00 0.00 3.01
579 580 3.985019 AAAAACGGTTTTGGGGAACTT 57.015 38.095 18.69 0.00 35.58 2.66
846 847 4.272489 AGATTCATTGGATCGGCTTTTCA 58.728 39.130 0.00 0.00 0.00 2.69
884 885 4.277672 CGGATCATTGATGCTTTTGAGGAT 59.722 41.667 15.08 0.00 0.00 3.24
888 889 3.378112 GGACGGATCATTGATGCTTTTGA 59.622 43.478 15.08 0.00 0.00 2.69
1018 1025 2.364448 GAGGAGGAAGAGGCGGGT 60.364 66.667 0.00 0.00 0.00 5.28
1245 1267 4.636435 ACCCGCTCAAACCCACCG 62.636 66.667 0.00 0.00 0.00 4.94
1271 1293 9.367444 CCCCATCTTATCTTATACGTACAAATC 57.633 37.037 0.00 0.00 0.00 2.17
1280 1302 5.940470 CACAAGGCCCCATCTTATCTTATAC 59.060 44.000 0.00 0.00 0.00 1.47
1281 1303 5.514834 GCACAAGGCCCCATCTTATCTTATA 60.515 44.000 0.00 0.00 36.11 0.98
1282 1304 4.751028 GCACAAGGCCCCATCTTATCTTAT 60.751 45.833 0.00 0.00 36.11 1.73
1299 1464 2.486472 ATTCCACCAGAGAGCACAAG 57.514 50.000 0.00 0.00 0.00 3.16
1327 1494 7.505585 TCTCCAAACCTAGAATCACAAAACATT 59.494 33.333 0.00 0.00 0.00 2.71
1338 1505 4.699994 TCCTTCCTCTCCAAACCTAGAAT 58.300 43.478 0.00 0.00 0.00 2.40
1340 1507 3.714144 CTCCTTCCTCTCCAAACCTAGA 58.286 50.000 0.00 0.00 0.00 2.43
1341 1508 2.169561 GCTCCTTCCTCTCCAAACCTAG 59.830 54.545 0.00 0.00 0.00 3.02
1575 1747 8.930760 GCGTTTAGATCATGCTCTTATATTTCT 58.069 33.333 4.07 0.00 0.00 2.52
1586 1758 8.839310 AAATATAAGAGCGTTTAGATCATGCT 57.161 30.769 0.00 0.00 39.30 3.79
1587 1759 8.930760 AGAAATATAAGAGCGTTTAGATCATGC 58.069 33.333 0.00 0.00 37.82 4.06
1594 1766 9.241317 TCCGTAAAGAAATATAAGAGCGTTTAG 57.759 33.333 0.00 0.00 0.00 1.85
1596 1768 7.224167 CCTCCGTAAAGAAATATAAGAGCGTTT 59.776 37.037 0.00 0.00 0.00 3.60
1597 1769 6.700520 CCTCCGTAAAGAAATATAAGAGCGTT 59.299 38.462 0.00 0.00 0.00 4.84
1598 1770 6.040166 TCCTCCGTAAAGAAATATAAGAGCGT 59.960 38.462 0.00 0.00 0.00 5.07
1599 1771 6.444633 TCCTCCGTAAAGAAATATAAGAGCG 58.555 40.000 0.00 0.00 0.00 5.03
1600 1772 7.435305 ACTCCTCCGTAAAGAAATATAAGAGC 58.565 38.462 0.00 0.00 0.00 4.09
1601 1773 9.896263 GTACTCCTCCGTAAAGAAATATAAGAG 57.104 37.037 0.00 0.00 0.00 2.85
1602 1774 9.638176 AGTACTCCTCCGTAAAGAAATATAAGA 57.362 33.333 0.00 0.00 0.00 2.10
1603 1775 9.680315 CAGTACTCCTCCGTAAAGAAATATAAG 57.320 37.037 0.00 0.00 0.00 1.73
1604 1776 8.636213 CCAGTACTCCTCCGTAAAGAAATATAA 58.364 37.037 0.00 0.00 0.00 0.98
1605 1777 7.781693 ACCAGTACTCCTCCGTAAAGAAATATA 59.218 37.037 0.00 0.00 0.00 0.86
1606 1778 6.610425 ACCAGTACTCCTCCGTAAAGAAATAT 59.390 38.462 0.00 0.00 0.00 1.28
1607 1779 5.954150 ACCAGTACTCCTCCGTAAAGAAATA 59.046 40.000 0.00 0.00 0.00 1.40
1609 1781 4.154942 ACCAGTACTCCTCCGTAAAGAAA 58.845 43.478 0.00 0.00 0.00 2.52
1610 1782 3.771216 ACCAGTACTCCTCCGTAAAGAA 58.229 45.455 0.00 0.00 0.00 2.52
1612 1784 4.532314 AAACCAGTACTCCTCCGTAAAG 57.468 45.455 0.00 0.00 0.00 1.85
1614 1786 4.961438 AAAAACCAGTACTCCTCCGTAA 57.039 40.909 0.00 0.00 0.00 3.18
1641 1813 3.696051 AGTACTCCTCCGTATACGCAAAA 59.304 43.478 19.86 4.35 38.18 2.44
1642 1814 3.282021 AGTACTCCTCCGTATACGCAAA 58.718 45.455 19.86 6.43 38.18 3.68
1643 1815 2.923121 AGTACTCCTCCGTATACGCAA 58.077 47.619 19.86 8.88 38.18 4.85
1645 1817 3.658709 ACTAGTACTCCTCCGTATACGC 58.341 50.000 19.86 3.56 38.18 4.42
1646 1818 7.093354 TCATAACTAGTACTCCTCCGTATACG 58.907 42.308 18.40 18.40 39.44 3.06
1647 1819 8.881743 CATCATAACTAGTACTCCTCCGTATAC 58.118 40.741 0.00 0.00 0.00 1.47
1650 1822 7.071069 TCATCATAACTAGTACTCCTCCGTA 57.929 40.000 0.00 0.00 0.00 4.02
1653 1825 8.588290 ATCATCATCATAACTAGTACTCCTCC 57.412 38.462 0.00 0.00 0.00 4.30
1675 1918 7.017551 ACCAGCACCTCCTAATATGAAATATCA 59.982 37.037 0.00 0.00 38.94 2.15
1705 1951 1.176619 GCCAACCGTTTAGGCTTGGT 61.177 55.000 14.94 0.00 45.17 3.67
1716 1962 1.964373 CCGCTAAACTGCCAACCGT 60.964 57.895 0.00 0.00 0.00 4.83
1732 1978 2.418628 ACGATAGAAATGCACCAAACCG 59.581 45.455 0.00 0.00 41.38 4.44
1738 1984 4.695217 TTCCAAACGATAGAAATGCACC 57.305 40.909 0.00 0.00 41.38 5.01
1871 2117 2.934364 GCACAATGTCTCCTCTGGTCTG 60.934 54.545 0.00 0.00 0.00 3.51
1876 2122 5.413833 ACATTTAAGCACAATGTCTCCTCTG 59.586 40.000 3.10 0.00 40.17 3.35
1907 2153 2.112190 TCAGCAACCCGGTATACATGA 58.888 47.619 5.01 0.00 0.00 3.07
1918 2164 3.745975 GCCAACTAAAATTTCAGCAACCC 59.254 43.478 0.00 0.00 0.00 4.11
2029 2280 5.496133 TCATTCAGTAGTTAGACCGTAGC 57.504 43.478 0.00 0.00 0.00 3.58
2041 2292 9.173939 GAAAAATGTGTCAAGTTCATTCAGTAG 57.826 33.333 0.00 0.00 32.39 2.57
2214 2465 5.785123 ACATTTAGGGGTAAGCTACTAGGA 58.215 41.667 0.00 0.00 0.00 2.94
2269 2520 8.713271 GTTGCCACTTCTAGTATAATCATAAGC 58.287 37.037 0.00 0.00 0.00 3.09
2359 2610 8.567948 CCACTGAACAATGGATATATTTACACC 58.432 37.037 0.00 0.00 38.34 4.16
2538 2789 6.149474 GCATACAACGATAATAGGCCTGAAAT 59.851 38.462 17.99 5.27 0.00 2.17
2555 2806 8.810427 CCAATGAATTCATTAAGTGCATACAAC 58.190 33.333 28.61 0.00 44.10 3.32
2582 2833 4.130857 TGTCCTAAGAATTGTGCGTTTGA 58.869 39.130 0.00 0.00 0.00 2.69
2704 2955 5.241506 CAGCAAGAGAATGGTTCCACTAAAA 59.758 40.000 0.00 0.00 0.00 1.52
2924 3175 9.739276 AGAGTGTGTATCTGGATTAATCAAAAA 57.261 29.630 17.07 0.00 0.00 1.94
2925 3176 9.739276 AAGAGTGTGTATCTGGATTAATCAAAA 57.261 29.630 17.07 0.00 0.00 2.44
3027 3293 3.161866 ACTGTTGTCCACCAAAACAAGT 58.838 40.909 0.00 0.00 36.14 3.16
3070 3336 2.435805 CTGCTCCAAGTTCTATAGGCCA 59.564 50.000 5.01 0.00 0.00 5.36
3180 3446 8.203485 TGAGTGCATCACAATATCTACACATAA 58.797 33.333 0.00 0.00 36.74 1.90
3421 3690 8.053355 AGGGAACAGGTAATAGAGTTTATTTGG 58.947 37.037 0.00 0.00 0.00 3.28
4107 4402 2.633509 GCTCCCTTTGCCTGCACAG 61.634 63.158 0.00 0.00 0.00 3.66
4285 4580 9.479549 AACTGGAGTATGTTGGATGATAAAATT 57.520 29.630 0.00 0.00 0.00 1.82
4295 4590 6.043938 AGGTTTTCTAACTGGAGTATGTTGGA 59.956 38.462 0.00 0.00 34.59 3.53
4309 4604 7.148390 GGATCAGCTTTGTAGAGGTTTTCTAAC 60.148 40.741 0.00 0.00 40.04 2.34
4350 4668 3.503891 GCTCTGAAACTACCTCGAAGAC 58.496 50.000 0.00 0.00 0.00 3.01
4534 4854 4.963318 GAGGTCATCCACATCCTCAATA 57.037 45.455 5.35 0.00 43.95 1.90
4543 4863 2.750814 TCAGCTATGAGGTCATCCACA 58.249 47.619 0.00 0.00 38.56 4.17
4618 4938 1.823169 AACTAGAACCCGAAGCGCCA 61.823 55.000 2.29 0.00 0.00 5.69
4710 5030 5.484958 GCTCGTCATTTCAGAAAATACTCG 58.515 41.667 0.00 2.09 33.27 4.18
4736 5056 3.135994 GAGGAACAACACATACAACCGT 58.864 45.455 0.00 0.00 0.00 4.83
4755 5075 5.335976 GGGTTTTTCTGTTGAAGCCTATGAG 60.336 44.000 0.00 0.00 37.81 2.90
4759 5079 3.888930 CAGGGTTTTTCTGTTGAAGCCTA 59.111 43.478 5.83 0.00 46.36 3.93
4799 5119 7.409661 CGATGTTGTGAAGTTTATGAATGTTGC 60.410 37.037 0.00 0.00 0.00 4.17
4806 5126 8.655970 CAAGTATCGATGTTGTGAAGTTTATGA 58.344 33.333 8.54 0.00 0.00 2.15
4825 5145 3.004752 ACATGGGCAGAACCAAGTATC 57.995 47.619 0.00 0.00 45.13 2.24
4827 5147 2.107378 TGAACATGGGCAGAACCAAGTA 59.893 45.455 0.00 0.00 45.13 2.24
4897 5217 1.169661 TCAACCAACGGCCATGTCAC 61.170 55.000 2.24 0.00 0.00 3.67
4924 5244 1.139455 TCCGACGAACCAACTCCTTTT 59.861 47.619 0.00 0.00 0.00 2.27
5198 5594 9.423061 CTTATACAAAAGGAAAAGGATTTGGTG 57.577 33.333 0.00 0.00 39.02 4.17
5273 5675 5.940192 AATTGCTCACACAAATAAGACGA 57.060 34.783 0.00 0.00 32.27 4.20
5302 5707 4.141287 ACACAAAAGGCACTAGCATTGTA 58.859 39.130 0.00 0.00 45.14 2.41
5557 5964 8.982685 CACACGCAAATAGATAGATCAATTAGT 58.017 33.333 0.00 0.00 0.00 2.24
5566 5973 4.348656 GTCGTCACACGCAAATAGATAGA 58.651 43.478 0.00 0.00 42.21 1.98


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.