Multiple sequence alignment - TraesCS7D01G138400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G138400 chr7D 100.000 2422 0 0 1 2422 88645824 88648245 0.000000e+00 4473
1 TraesCS7D01G138400 chr7D 96.185 865 33 0 1 865 231605268 231604404 0.000000e+00 1415
2 TraesCS7D01G138400 chr7D 96.069 865 34 0 1 865 231543660 231544524 0.000000e+00 1410
3 TraesCS7D01G138400 chr7D 95.266 169 8 0 2254 2422 595070861 595071029 3.970000e-68 268
4 TraesCS7D01G138400 chr5D 95.867 1379 34 4 865 2220 503217330 503218708 0.000000e+00 2209
5 TraesCS7D01G138400 chr5D 95.217 1380 42 4 865 2220 6188051 6189430 0.000000e+00 2161
6 TraesCS7D01G138400 chr5D 96.185 865 32 1 1 865 503247922 503248785 0.000000e+00 1413
7 TraesCS7D01G138400 chr5D 95.266 169 8 0 2254 2422 503243923 503244091 3.970000e-68 268
8 TraesCS7D01G138400 chr5D 95.266 169 8 0 2254 2422 503266652 503266484 3.970000e-68 268
9 TraesCS7D01G138400 chr3B 95.867 1379 34 4 865 2220 201526136 201527514 0.000000e+00 2209
10 TraesCS7D01G138400 chr3B 96.069 865 34 0 1 865 201572137 201571273 0.000000e+00 1410
11 TraesCS7D01G138400 chr6D 95.794 1379 35 4 865 2220 168254038 168255416 0.000000e+00 2204
12 TraesCS7D01G138400 chr6D 95.097 877 20 5 865 1718 168252652 168251776 0.000000e+00 1360
13 TraesCS7D01G138400 chrUn 95.649 1379 37 4 865 2220 216519490 216518112 0.000000e+00 2193
14 TraesCS7D01G138400 chrUn 95.577 1379 37 7 865 2220 93410518 93409141 0.000000e+00 2187
15 TraesCS7D01G138400 chrUn 96.845 824 26 0 1397 2220 346596827 346596004 0.000000e+00 1378
16 TraesCS7D01G138400 chrUn 95.097 877 20 5 865 1718 216520876 216521752 0.000000e+00 1360
17 TraesCS7D01G138400 chrUn 95.266 169 8 0 2254 2422 216507467 216507299 3.970000e-68 268
18 TraesCS7D01G138400 chrUn 95.266 169 8 0 2254 2422 388831840 388831672 3.970000e-68 268
19 TraesCS7D01G138400 chrUn 95.266 169 8 0 2254 2422 441243827 441243659 3.970000e-68 268
20 TraesCS7D01G138400 chr3D 95.649 1379 35 5 865 2220 589280430 589279054 0.000000e+00 2191
21 TraesCS7D01G138400 chr3D 96.069 865 34 0 1 865 589260877 589260013 0.000000e+00 1410
22 TraesCS7D01G138400 chr1A 95.778 1350 35 3 893 2220 554511389 554512738 0.000000e+00 2158
23 TraesCS7D01G138400 chr1D 94.783 1380 48 6 865 2220 254398998 254397619 0.000000e+00 2128
24 TraesCS7D01G138400 chr1D 95.266 169 8 0 2254 2422 176208390 176208558 3.970000e-68 268
25 TraesCS7D01G138400 chr2A 96.301 865 32 0 1 865 726903805 726902941 0.000000e+00 1421
26 TraesCS7D01G138400 chr2A 95.858 169 7 0 2254 2422 335845963 335846131 8.530000e-70 274
27 TraesCS7D01G138400 chr2D 96.185 865 33 0 1 865 591987259 591988123 0.000000e+00 1415
28 TraesCS7D01G138400 chr2D 93.925 642 16 11 865 1483 322926993 322926352 0.000000e+00 948
29 TraesCS7D01G138400 chr2D 95.266 169 8 0 2254 2422 272554432 272554600 3.970000e-68 268
30 TraesCS7D01G138400 chr4A 96.069 865 34 0 1 865 583866256 583865392 0.000000e+00 1410
31 TraesCS7D01G138400 chr3A 96.069 865 34 0 1 865 66002483 66001619 0.000000e+00 1410


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G138400 chr7D 88645824 88648245 2421 False 4473.0 4473 100.0000 1 2422 1 chr7D.!!$F1 2421
1 TraesCS7D01G138400 chr7D 231604404 231605268 864 True 1415.0 1415 96.1850 1 865 1 chr7D.!!$R1 864
2 TraesCS7D01G138400 chr7D 231543660 231544524 864 False 1410.0 1410 96.0690 1 865 1 chr7D.!!$F2 864
3 TraesCS7D01G138400 chr5D 503217330 503218708 1378 False 2209.0 2209 95.8670 865 2220 1 chr5D.!!$F2 1355
4 TraesCS7D01G138400 chr5D 6188051 6189430 1379 False 2161.0 2161 95.2170 865 2220 1 chr5D.!!$F1 1355
5 TraesCS7D01G138400 chr5D 503243923 503248785 4862 False 840.5 1413 95.7255 1 2422 2 chr5D.!!$F3 2421
6 TraesCS7D01G138400 chr3B 201526136 201527514 1378 False 2209.0 2209 95.8670 865 2220 1 chr3B.!!$F1 1355
7 TraesCS7D01G138400 chr3B 201571273 201572137 864 True 1410.0 1410 96.0690 1 865 1 chr3B.!!$R1 864
8 TraesCS7D01G138400 chr6D 168254038 168255416 1378 False 2204.0 2204 95.7940 865 2220 1 chr6D.!!$F1 1355
9 TraesCS7D01G138400 chr6D 168251776 168252652 876 True 1360.0 1360 95.0970 865 1718 1 chr6D.!!$R1 853
10 TraesCS7D01G138400 chrUn 216518112 216519490 1378 True 2193.0 2193 95.6490 865 2220 1 chrUn.!!$R3 1355
11 TraesCS7D01G138400 chrUn 93409141 93410518 1377 True 2187.0 2187 95.5770 865 2220 1 chrUn.!!$R1 1355
12 TraesCS7D01G138400 chrUn 346596004 346596827 823 True 1378.0 1378 96.8450 1397 2220 1 chrUn.!!$R4 823
13 TraesCS7D01G138400 chrUn 216520876 216521752 876 False 1360.0 1360 95.0970 865 1718 1 chrUn.!!$F1 853
14 TraesCS7D01G138400 chr3D 589279054 589280430 1376 True 2191.0 2191 95.6490 865 2220 1 chr3D.!!$R2 1355
15 TraesCS7D01G138400 chr3D 589260013 589260877 864 True 1410.0 1410 96.0690 1 865 1 chr3D.!!$R1 864
16 TraesCS7D01G138400 chr1A 554511389 554512738 1349 False 2158.0 2158 95.7780 893 2220 1 chr1A.!!$F1 1327
17 TraesCS7D01G138400 chr1D 254397619 254398998 1379 True 2128.0 2128 94.7830 865 2220 1 chr1D.!!$R1 1355
18 TraesCS7D01G138400 chr2A 726902941 726903805 864 True 1421.0 1421 96.3010 1 865 1 chr2A.!!$R1 864
19 TraesCS7D01G138400 chr2D 591987259 591988123 864 False 1415.0 1415 96.1850 1 865 1 chr2D.!!$F2 864
20 TraesCS7D01G138400 chr2D 322926352 322926993 641 True 948.0 948 93.9250 865 1483 1 chr2D.!!$R1 618
21 TraesCS7D01G138400 chr4A 583865392 583866256 864 True 1410.0 1410 96.0690 1 865 1 chr4A.!!$R1 864
22 TraesCS7D01G138400 chr3A 66001619 66002483 864 True 1410.0 1410 96.0690 1 865 1 chr3A.!!$R1 864

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
107 4107 0.618680 CCATGGAGGGTGAGTCAGGA 60.619 60.0 5.56 0.0 0.0 3.86 F
307 4307 0.815734 GGTCTGAGTACCAAGCGCTA 59.184 55.0 12.05 0.0 39.5 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1176 5179 0.337082 TTACCATCTCGGGAGGTCCA 59.663 55.0 9.37 0.0 40.22 4.02 R
2262 6306 0.034337 TAAAGACGAGGGTTGCGCTT 59.966 50.0 9.73 0.0 0.00 4.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 4034 2.289195 TGTCGGCCTGAGTAACGAAAAT 60.289 45.455 0.00 0.00 37.08 1.82
68 4068 1.826340 AATGCCCCGAAAACCCAAGC 61.826 55.000 0.00 0.00 0.00 4.01
107 4107 0.618680 CCATGGAGGGTGAGTCAGGA 60.619 60.000 5.56 0.00 0.00 3.86
150 4150 1.633774 AGTCGATGGACAACAGGTCT 58.366 50.000 10.69 0.00 45.92 3.85
214 4214 3.180891 GCTAGGTTAGCCGAAAGATGT 57.819 47.619 0.00 0.00 45.95 3.06
216 4216 3.556365 GCTAGGTTAGCCGAAAGATGTTC 59.444 47.826 0.00 0.00 45.95 3.18
225 4225 4.396166 AGCCGAAAGATGTTCATAGGTTTG 59.604 41.667 0.00 0.00 0.00 2.93
244 4244 1.132977 TGAGGACACAAGGTGACCCTA 60.133 52.381 12.93 1.96 46.34 3.53
292 4292 1.557269 AATGCCTCGAGCCAAGGTCT 61.557 55.000 6.99 0.00 42.71 3.85
307 4307 0.815734 GGTCTGAGTACCAAGCGCTA 59.184 55.000 12.05 0.00 39.50 4.26
360 4360 2.202676 GCTTCTCCACGAGGCTCG 60.203 66.667 33.42 33.42 46.93 5.03
406 4406 5.841237 AGTATGTAACTGATGCCATACTCCT 59.159 40.000 5.56 0.00 43.93 3.69
458 4458 1.478105 GTACCTGTACCCGAAACCGAT 59.522 52.381 0.00 0.00 0.00 4.18
615 4615 5.479027 ACTGTTTACCAAAAACACAGGTCTT 59.521 36.000 0.00 0.00 35.45 3.01
660 4660 2.362120 GCTGATGCCTGCCCAGTT 60.362 61.111 9.37 0.00 0.00 3.16
662 4662 1.302285 CTGATGCCTGCCCAGTTCT 59.698 57.895 0.00 0.00 0.00 3.01
756 4756 6.483640 CGTAACTATAACGGTCCTAAGGTAGT 59.516 42.308 0.00 0.00 36.71 2.73
789 4789 1.219935 GGTAAGTTCCGACCCGCAT 59.780 57.895 0.00 0.00 0.00 4.73
796 4796 2.046314 CCGACCCGCATGAAAGGT 60.046 61.111 0.00 0.00 36.31 3.50
858 4858 6.820152 TGAAATAGACATGTCTGTGAAGATGG 59.180 38.462 33.76 0.00 40.71 3.51
865 4865 3.516586 TGTCTGTGAAGATGGGGACTAA 58.483 45.455 0.00 0.00 0.00 2.24
866 4866 3.907474 TGTCTGTGAAGATGGGGACTAAA 59.093 43.478 0.00 0.00 0.00 1.85
867 4867 4.020218 TGTCTGTGAAGATGGGGACTAAAG 60.020 45.833 0.00 0.00 0.00 1.85
868 4868 3.055094 TCTGTGAAGATGGGGACTAAAGC 60.055 47.826 0.00 0.00 0.00 3.51
891 4891 9.474313 AAGCAATTTTCCATATTCCTAGTTACA 57.526 29.630 0.00 0.00 0.00 2.41
927 4927 5.107568 GGCGACGAAGAATAAAACTATAGCC 60.108 44.000 0.00 0.00 0.00 3.93
961 4961 6.101296 TCCTTTTCCTAGTTCTTCTTCCAAGT 59.899 38.462 0.00 0.00 0.00 3.16
1111 5113 1.580059 AGATCCGGCTCTACCCAAAA 58.420 50.000 5.89 0.00 33.26 2.44
1112 5114 1.913419 AGATCCGGCTCTACCCAAAAA 59.087 47.619 5.89 0.00 33.26 1.94
1144 5147 1.810151 CCCAACATTACCCACTTGTCG 59.190 52.381 0.00 0.00 0.00 4.35
1176 5179 6.889722 TGCTAAGCAGTTTTGGGATACTAAAT 59.110 34.615 0.00 0.00 39.36 1.40
1186 5189 2.302157 GGGATACTAAATGGACCTCCCG 59.698 54.545 0.00 0.00 37.93 5.14
1240 5243 5.392380 CCTCTTTTGCAATGAGTTTCGCTAT 60.392 40.000 21.02 0.00 32.43 2.97
1276 5279 0.033109 GCTAATTGCCCACCCCTTCT 60.033 55.000 0.00 0.00 35.15 2.85
1536 5580 1.298859 GCGTTCCGTCATCTGGCTTT 61.299 55.000 0.00 0.00 0.00 3.51
1615 5659 6.015180 TCCACATATTATGGGTAACGTAGGAC 60.015 42.308 8.48 0.00 37.85 3.85
1702 5746 8.820831 ACCATCAAATTAAATGTGAATAACCCA 58.179 29.630 0.00 0.00 0.00 4.51
1762 5806 2.606725 TGCGTGCTTCAAACAATTTTGG 59.393 40.909 0.00 0.00 42.23 3.28
1887 5931 4.346730 TCCCGTAGAGGTAGTCAAATTGA 58.653 43.478 0.00 0.00 38.74 2.57
1918 5962 7.113684 GTGATCGATTTCTAGGTTTCATCGTAG 59.886 40.741 0.00 0.00 38.30 3.51
2129 6173 9.096823 TCAATTAGGGTCGTATTCTATGGTTAT 57.903 33.333 0.00 0.00 0.00 1.89
2140 6184 9.923143 CGTATTCTATGGTTATGATTCTACCAA 57.077 33.333 0.00 0.00 44.49 3.67
2197 6241 2.029290 CGGTATAGGCGCTTATGACCTT 60.029 50.000 21.14 0.00 34.92 3.50
2202 6246 1.887707 GCGCTTATGACCTTCCCCG 60.888 63.158 0.00 0.00 0.00 5.73
2214 6258 2.615227 CTTCCCCGCTATGCCTTGCT 62.615 60.000 0.00 0.00 0.00 3.91
2220 6264 2.549992 CCCGCTATGCCTTGCTGTAATA 60.550 50.000 0.00 0.00 0.00 0.98
2221 6265 2.480419 CCGCTATGCCTTGCTGTAATAC 59.520 50.000 0.00 0.00 0.00 1.89
2222 6266 3.393800 CGCTATGCCTTGCTGTAATACT 58.606 45.455 0.00 0.00 0.00 2.12
2223 6267 4.556233 CGCTATGCCTTGCTGTAATACTA 58.444 43.478 0.00 0.00 0.00 1.82
2224 6268 4.988540 CGCTATGCCTTGCTGTAATACTAA 59.011 41.667 0.00 0.00 0.00 2.24
2225 6269 5.639506 CGCTATGCCTTGCTGTAATACTAAT 59.360 40.000 0.00 0.00 0.00 1.73
2226 6270 6.401474 CGCTATGCCTTGCTGTAATACTAATG 60.401 42.308 0.00 0.00 0.00 1.90
2227 6271 6.428159 GCTATGCCTTGCTGTAATACTAATGT 59.572 38.462 0.00 0.00 0.00 2.71
2228 6272 6.867662 ATGCCTTGCTGTAATACTAATGTC 57.132 37.500 0.00 0.00 0.00 3.06
2229 6273 5.989477 TGCCTTGCTGTAATACTAATGTCT 58.011 37.500 0.00 0.00 0.00 3.41
2230 6274 5.817296 TGCCTTGCTGTAATACTAATGTCTG 59.183 40.000 0.00 0.00 0.00 3.51
2231 6275 5.817816 GCCTTGCTGTAATACTAATGTCTGT 59.182 40.000 0.00 0.00 0.00 3.41
2232 6276 6.316390 GCCTTGCTGTAATACTAATGTCTGTT 59.684 38.462 0.00 0.00 0.00 3.16
2233 6277 7.494625 GCCTTGCTGTAATACTAATGTCTGTTA 59.505 37.037 0.00 0.00 0.00 2.41
2234 6278 9.035607 CCTTGCTGTAATACTAATGTCTGTTAG 57.964 37.037 0.00 0.00 37.62 2.34
2235 6279 8.942338 TTGCTGTAATACTAATGTCTGTTAGG 57.058 34.615 0.00 0.00 36.27 2.69
2236 6280 6.984474 TGCTGTAATACTAATGTCTGTTAGGC 59.016 38.462 0.00 0.00 36.27 3.93
2237 6281 7.147724 TGCTGTAATACTAATGTCTGTTAGGCT 60.148 37.037 0.00 0.00 36.27 4.58
2238 6282 8.358148 GCTGTAATACTAATGTCTGTTAGGCTA 58.642 37.037 0.00 0.00 36.27 3.93
2239 6283 9.680315 CTGTAATACTAATGTCTGTTAGGCTAC 57.320 37.037 0.00 0.00 36.27 3.58
2240 6284 9.417561 TGTAATACTAATGTCTGTTAGGCTACT 57.582 33.333 0.00 0.00 36.27 2.57
2241 6285 9.680315 GTAATACTAATGTCTGTTAGGCTACTG 57.320 37.037 0.00 0.00 36.27 2.74
2242 6286 7.899648 ATACTAATGTCTGTTAGGCTACTGT 57.100 36.000 0.00 0.00 36.27 3.55
2243 6287 6.607004 ACTAATGTCTGTTAGGCTACTGTT 57.393 37.500 0.00 0.00 36.27 3.16
2244 6288 6.631962 ACTAATGTCTGTTAGGCTACTGTTC 58.368 40.000 0.00 0.00 36.27 3.18
2245 6289 5.746990 AATGTCTGTTAGGCTACTGTTCT 57.253 39.130 0.00 0.00 0.00 3.01
2246 6290 4.785511 TGTCTGTTAGGCTACTGTTCTC 57.214 45.455 0.00 0.00 0.00 2.87
2247 6291 3.510360 TGTCTGTTAGGCTACTGTTCTCC 59.490 47.826 0.00 0.00 0.00 3.71
2248 6292 3.764972 GTCTGTTAGGCTACTGTTCTCCT 59.235 47.826 0.00 0.00 0.00 3.69
2249 6293 4.948621 GTCTGTTAGGCTACTGTTCTCCTA 59.051 45.833 0.00 0.00 0.00 2.94
2250 6294 5.595133 GTCTGTTAGGCTACTGTTCTCCTAT 59.405 44.000 0.00 0.00 31.86 2.57
2251 6295 6.097129 GTCTGTTAGGCTACTGTTCTCCTATT 59.903 42.308 0.00 0.00 31.86 1.73
2252 6296 6.321690 TCTGTTAGGCTACTGTTCTCCTATTC 59.678 42.308 0.00 0.00 31.86 1.75
2253 6297 6.195700 TGTTAGGCTACTGTTCTCCTATTCT 58.804 40.000 0.00 0.00 31.86 2.40
2254 6298 6.321690 TGTTAGGCTACTGTTCTCCTATTCTC 59.678 42.308 0.00 0.00 31.86 2.87
2255 6299 5.137412 AGGCTACTGTTCTCCTATTCTCT 57.863 43.478 0.00 0.00 0.00 3.10
2256 6300 5.524535 AGGCTACTGTTCTCCTATTCTCTT 58.475 41.667 0.00 0.00 0.00 2.85
2257 6301 5.362430 AGGCTACTGTTCTCCTATTCTCTTG 59.638 44.000 0.00 0.00 0.00 3.02
2258 6302 5.047188 GCTACTGTTCTCCTATTCTCTTGC 58.953 45.833 0.00 0.00 0.00 4.01
2259 6303 5.394663 GCTACTGTTCTCCTATTCTCTTGCA 60.395 44.000 0.00 0.00 0.00 4.08
2260 6304 5.489792 ACTGTTCTCCTATTCTCTTGCAA 57.510 39.130 0.00 0.00 0.00 4.08
2261 6305 5.241662 ACTGTTCTCCTATTCTCTTGCAAC 58.758 41.667 0.00 0.00 0.00 4.17
2262 6306 5.221722 ACTGTTCTCCTATTCTCTTGCAACA 60.222 40.000 0.00 0.00 0.00 3.33
2263 6307 5.620206 TGTTCTCCTATTCTCTTGCAACAA 58.380 37.500 0.00 0.00 0.00 2.83
2264 6308 5.702670 TGTTCTCCTATTCTCTTGCAACAAG 59.297 40.000 0.00 0.81 0.00 3.16
2265 6309 4.256920 TCTCCTATTCTCTTGCAACAAGC 58.743 43.478 0.00 0.00 45.96 4.01
2274 6318 2.050077 GCAACAAGCGCAACCCTC 60.050 61.111 11.47 0.00 0.00 4.30
2275 6319 2.252260 CAACAAGCGCAACCCTCG 59.748 61.111 11.47 0.00 0.00 4.63
2276 6320 2.203153 AACAAGCGCAACCCTCGT 60.203 55.556 11.47 0.00 0.00 4.18
2277 6321 2.251642 AACAAGCGCAACCCTCGTC 61.252 57.895 11.47 0.00 0.00 4.20
2278 6322 2.357517 CAAGCGCAACCCTCGTCT 60.358 61.111 11.47 0.00 0.00 4.18
2279 6323 1.961277 CAAGCGCAACCCTCGTCTT 60.961 57.895 11.47 0.00 0.00 3.01
2280 6324 1.227853 AAGCGCAACCCTCGTCTTT 60.228 52.632 11.47 0.00 0.00 2.52
2281 6325 0.034337 AAGCGCAACCCTCGTCTTTA 59.966 50.000 11.47 0.00 0.00 1.85
2282 6326 0.389948 AGCGCAACCCTCGTCTTTAG 60.390 55.000 11.47 0.00 0.00 1.85
2283 6327 0.669625 GCGCAACCCTCGTCTTTAGT 60.670 55.000 0.30 0.00 0.00 2.24
2284 6328 1.792006 CGCAACCCTCGTCTTTAGTT 58.208 50.000 0.00 0.00 0.00 2.24
2285 6329 1.459592 CGCAACCCTCGTCTTTAGTTG 59.540 52.381 0.00 0.00 40.55 3.16
2287 6331 1.804748 CAACCCTCGTCTTTAGTTGCC 59.195 52.381 0.00 0.00 32.30 4.52
2288 6332 1.053424 ACCCTCGTCTTTAGTTGCCA 58.947 50.000 0.00 0.00 0.00 4.92
2289 6333 1.270678 ACCCTCGTCTTTAGTTGCCAC 60.271 52.381 0.00 0.00 0.00 5.01
2290 6334 1.002087 CCCTCGTCTTTAGTTGCCACT 59.998 52.381 0.00 0.00 36.99 4.00
2291 6335 2.232941 CCCTCGTCTTTAGTTGCCACTA 59.767 50.000 0.00 0.00 34.06 2.74
2292 6336 3.118738 CCCTCGTCTTTAGTTGCCACTAT 60.119 47.826 0.00 0.00 35.32 2.12
2293 6337 3.865745 CCTCGTCTTTAGTTGCCACTATG 59.134 47.826 0.00 0.00 35.32 2.23
2294 6338 4.381612 CCTCGTCTTTAGTTGCCACTATGA 60.382 45.833 0.00 0.00 35.32 2.15
2295 6339 5.142061 TCGTCTTTAGTTGCCACTATGAA 57.858 39.130 0.00 0.00 35.32 2.57
2296 6340 5.730550 TCGTCTTTAGTTGCCACTATGAAT 58.269 37.500 0.00 0.00 35.32 2.57
2297 6341 6.170506 TCGTCTTTAGTTGCCACTATGAATT 58.829 36.000 0.00 0.00 35.32 2.17
2298 6342 6.653320 TCGTCTTTAGTTGCCACTATGAATTT 59.347 34.615 0.00 0.00 35.32 1.82
2299 6343 6.742718 CGTCTTTAGTTGCCACTATGAATTTG 59.257 38.462 0.00 0.00 35.32 2.32
2300 6344 7.029563 GTCTTTAGTTGCCACTATGAATTTGG 58.970 38.462 0.00 0.00 35.32 3.28
2301 6345 6.945435 TCTTTAGTTGCCACTATGAATTTGGA 59.055 34.615 0.00 0.00 35.32 3.53
2302 6346 7.450014 TCTTTAGTTGCCACTATGAATTTGGAA 59.550 33.333 0.00 0.00 35.32 3.53
2303 6347 5.391312 AGTTGCCACTATGAATTTGGAAC 57.609 39.130 0.00 0.50 31.39 3.62
2304 6348 4.220602 AGTTGCCACTATGAATTTGGAACC 59.779 41.667 0.00 0.00 31.39 3.62
2305 6349 3.096092 TGCCACTATGAATTTGGAACCC 58.904 45.455 0.00 0.00 31.39 4.11
2306 6350 3.245586 TGCCACTATGAATTTGGAACCCT 60.246 43.478 0.00 0.00 31.39 4.34
2307 6351 3.131046 GCCACTATGAATTTGGAACCCTG 59.869 47.826 0.00 0.00 31.39 4.45
2308 6352 4.599041 CCACTATGAATTTGGAACCCTGA 58.401 43.478 0.00 0.00 31.39 3.86
2309 6353 5.016173 CCACTATGAATTTGGAACCCTGAA 58.984 41.667 0.00 0.00 31.39 3.02
2310 6354 5.105756 CCACTATGAATTTGGAACCCTGAAC 60.106 44.000 0.00 0.00 31.39 3.18
2311 6355 5.476599 CACTATGAATTTGGAACCCTGAACA 59.523 40.000 0.00 0.00 0.00 3.18
2312 6356 5.711976 ACTATGAATTTGGAACCCTGAACAG 59.288 40.000 0.00 0.00 0.00 3.16
2313 6357 4.177537 TGAATTTGGAACCCTGAACAGA 57.822 40.909 3.19 0.00 0.00 3.41
2314 6358 3.888930 TGAATTTGGAACCCTGAACAGAC 59.111 43.478 3.19 0.00 0.00 3.51
2315 6359 2.358322 TTTGGAACCCTGAACAGACC 57.642 50.000 3.19 2.79 0.00 3.85
2316 6360 0.107831 TTGGAACCCTGAACAGACCG 59.892 55.000 3.19 0.00 0.00 4.79
2317 6361 1.671379 GGAACCCTGAACAGACCGC 60.671 63.158 3.19 0.00 0.00 5.68
2318 6362 1.671379 GAACCCTGAACAGACCGCC 60.671 63.158 3.19 0.00 0.00 6.13
2319 6363 3.530910 AACCCTGAACAGACCGCCG 62.531 63.158 3.19 0.00 0.00 6.46
2320 6364 4.760047 CCCTGAACAGACCGCCGG 62.760 72.222 0.00 0.00 0.00 6.13
2321 6365 4.003788 CCTGAACAGACCGCCGGT 62.004 66.667 9.43 9.43 39.44 5.28
2322 6366 2.738521 CTGAACAGACCGCCGGTG 60.739 66.667 16.53 8.42 35.25 4.94
2323 6367 3.515316 CTGAACAGACCGCCGGTGT 62.515 63.158 16.53 6.90 35.25 4.16
2324 6368 2.280592 GAACAGACCGCCGGTGTT 60.281 61.111 16.53 13.42 35.25 3.32
2325 6369 1.005867 GAACAGACCGCCGGTGTTA 60.006 57.895 16.53 0.00 35.25 2.41
2326 6370 0.600782 GAACAGACCGCCGGTGTTAA 60.601 55.000 16.53 0.00 35.25 2.01
2327 6371 0.601841 AACAGACCGCCGGTGTTAAG 60.602 55.000 16.53 0.00 35.25 1.85
2328 6372 2.047560 AGACCGCCGGTGTTAAGC 60.048 61.111 16.53 0.00 35.25 3.09
2329 6373 3.122971 GACCGCCGGTGTTAAGCC 61.123 66.667 16.53 0.00 35.25 4.35
2346 6390 4.189539 CGGAGGGAGGAGAGGATG 57.810 66.667 0.00 0.00 0.00 3.51
2347 6391 1.539165 CGGAGGGAGGAGAGGATGA 59.461 63.158 0.00 0.00 0.00 2.92
2348 6392 0.539438 CGGAGGGAGGAGAGGATGAG 60.539 65.000 0.00 0.00 0.00 2.90
2349 6393 0.178935 GGAGGGAGGAGAGGATGAGG 60.179 65.000 0.00 0.00 0.00 3.86
2350 6394 0.831711 GAGGGAGGAGAGGATGAGGC 60.832 65.000 0.00 0.00 0.00 4.70
2351 6395 1.841103 GGGAGGAGAGGATGAGGCC 60.841 68.421 0.00 0.00 0.00 5.19
2352 6396 1.074926 GGAGGAGAGGATGAGGCCA 60.075 63.158 5.01 0.00 0.00 5.36
2353 6397 0.692419 GGAGGAGAGGATGAGGCCAA 60.692 60.000 5.01 0.00 0.00 4.52
2354 6398 0.758123 GAGGAGAGGATGAGGCCAAG 59.242 60.000 5.01 0.00 0.00 3.61
2355 6399 1.148048 GGAGAGGATGAGGCCAAGC 59.852 63.158 5.01 0.00 0.00 4.01
2366 6410 3.543641 GCCAAGCCATCATGCCCC 61.544 66.667 0.00 0.00 0.00 5.80
2367 6411 2.281091 CCAAGCCATCATGCCCCT 59.719 61.111 0.00 0.00 0.00 4.79
2368 6412 1.382146 CCAAGCCATCATGCCCCTT 60.382 57.895 0.00 0.00 0.00 3.95
2369 6413 0.106066 CCAAGCCATCATGCCCCTTA 60.106 55.000 0.00 0.00 0.00 2.69
2370 6414 1.481802 CCAAGCCATCATGCCCCTTAT 60.482 52.381 0.00 0.00 0.00 1.73
2371 6415 1.616865 CAAGCCATCATGCCCCTTATG 59.383 52.381 0.00 0.00 0.00 1.90
2372 6416 0.541296 AGCCATCATGCCCCTTATGC 60.541 55.000 0.00 0.00 0.00 3.14
2373 6417 1.538687 GCCATCATGCCCCTTATGCC 61.539 60.000 0.00 0.00 0.00 4.40
2374 6418 0.901580 CCATCATGCCCCTTATGCCC 60.902 60.000 0.00 0.00 0.00 5.36
2375 6419 0.113776 CATCATGCCCCTTATGCCCT 59.886 55.000 0.00 0.00 0.00 5.19
2376 6420 0.113776 ATCATGCCCCTTATGCCCTG 59.886 55.000 0.00 0.00 0.00 4.45
2377 6421 1.532316 CATGCCCCTTATGCCCTGG 60.532 63.158 0.00 0.00 0.00 4.45
2378 6422 2.782417 ATGCCCCTTATGCCCTGGG 61.782 63.158 8.86 8.86 41.23 4.45
2399 6443 4.632037 CACACGTGCAACAATGGG 57.368 55.556 17.22 0.00 35.74 4.00
2400 6444 1.661197 CACACGTGCAACAATGGGC 60.661 57.895 17.22 0.00 35.74 5.36
2401 6445 2.428902 CACGTGCAACAATGGGCG 60.429 61.111 0.82 0.00 35.74 6.13
2402 6446 3.669344 ACGTGCAACAATGGGCGG 61.669 61.111 0.00 0.00 35.74 6.13
2403 6447 4.418401 CGTGCAACAATGGGCGGG 62.418 66.667 0.00 0.00 35.74 6.13
2404 6448 2.988684 GTGCAACAATGGGCGGGA 60.989 61.111 0.00 0.00 36.32 5.14
2405 6449 2.988684 TGCAACAATGGGCGGGAC 60.989 61.111 0.00 0.00 0.00 4.46
2406 6450 2.988684 GCAACAATGGGCGGGACA 60.989 61.111 0.00 0.00 0.00 4.02
2407 6451 2.569354 GCAACAATGGGCGGGACAA 61.569 57.895 0.00 0.00 0.00 3.18
2408 6452 2.045280 CAACAATGGGCGGGACAAA 58.955 52.632 0.00 0.00 0.00 2.83
2409 6453 0.038343 CAACAATGGGCGGGACAAAG 60.038 55.000 0.00 0.00 0.00 2.77
2410 6454 1.184970 AACAATGGGCGGGACAAAGG 61.185 55.000 0.00 0.00 0.00 3.11
2411 6455 2.037208 AATGGGCGGGACAAAGGG 59.963 61.111 0.00 0.00 0.00 3.95
2412 6456 2.852281 AATGGGCGGGACAAAGGGT 61.852 57.895 0.00 0.00 0.00 4.34
2413 6457 2.781431 AATGGGCGGGACAAAGGGTC 62.781 60.000 0.00 0.00 46.20 4.46
2420 6464 4.913126 GACAAAGGGTCGCGATCT 57.087 55.556 20.42 13.95 36.65 2.75
2421 6465 2.666989 GACAAAGGGTCGCGATCTC 58.333 57.895 20.42 9.88 36.65 2.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 4020 7.827819 TCTCACCAATATTTTCGTTACTCAG 57.172 36.000 0.00 0.00 0.00 3.35
107 4107 1.486726 CCTTTCGGCCTGATCTTAGGT 59.513 52.381 0.00 0.00 40.11 3.08
150 4150 6.328148 CCAACAAGGGGTAGTACAGGAATATA 59.672 42.308 2.06 0.00 0.00 0.86
214 4214 4.104102 ACCTTGTGTCCTCAAACCTATGAA 59.896 41.667 0.00 0.00 0.00 2.57
216 4216 3.753272 CACCTTGTGTCCTCAAACCTATG 59.247 47.826 0.00 0.00 0.00 2.23
244 4244 3.465966 ACCCCTTCTTACCCTGAAAAAGT 59.534 43.478 0.00 0.00 0.00 2.66
292 4292 0.108804 GCTGTAGCGCTTGGTACTCA 60.109 55.000 18.68 3.33 44.85 3.41
307 4307 0.460987 GGCTCATACTTCAGCGCTGT 60.461 55.000 34.70 19.94 36.41 4.40
406 4406 1.891150 AGGTCGTTCGAGCTTTTCCTA 59.109 47.619 18.85 0.00 39.59 2.94
458 4458 6.801632 AGGTATTCTCTACCTACCCACCTATA 59.198 42.308 2.10 0.00 45.47 1.31
585 4585 2.054232 TTTTGGTAAACAGTCGCCCA 57.946 45.000 0.00 0.00 0.00 5.36
615 4615 3.472652 ACATGGTCTTACAACTTTGCGA 58.527 40.909 0.00 0.00 0.00 5.10
660 4660 2.106511 CCAACTTCCTTGACCTTCCAGA 59.893 50.000 0.00 0.00 30.42 3.86
662 4662 1.850345 ACCAACTTCCTTGACCTTCCA 59.150 47.619 0.00 0.00 30.42 3.53
756 4756 4.360951 ACTTACCCGACAAGGAATTTCA 57.639 40.909 0.00 0.00 45.00 2.69
789 4789 3.010027 TGCCCAGATCATTACACCTTTCA 59.990 43.478 0.00 0.00 0.00 2.69
796 4796 2.840038 AGACAGTGCCCAGATCATTACA 59.160 45.455 0.00 0.00 0.00 2.41
858 4858 7.069950 AGGAATATGGAAAATTGCTTTAGTCCC 59.930 37.037 9.32 0.00 31.78 4.46
865 4865 9.474313 TGTAACTAGGAATATGGAAAATTGCTT 57.526 29.630 0.00 0.00 36.54 3.91
866 4866 9.646522 ATGTAACTAGGAATATGGAAAATTGCT 57.353 29.630 0.00 0.00 38.40 3.91
891 4891 5.173774 TCTTCGTCGCCGTAAGTAAATAT 57.826 39.130 0.00 0.00 35.01 1.28
961 4961 1.580066 CCCCTTGGGGTTATCCTGCA 61.580 60.000 16.51 0.00 42.41 4.41
1144 5147 3.550842 CCAAAACTGCTTAGCAACAGTCC 60.551 47.826 8.68 0.00 46.17 3.85
1176 5179 0.337082 TTACCATCTCGGGAGGTCCA 59.663 55.000 9.37 0.00 40.22 4.02
1186 5189 4.511826 CGGCCACTTTAAGATTACCATCTC 59.488 45.833 2.24 0.00 39.00 2.75
1276 5279 7.042119 CCATGCATAACATAGAAATCACACGTA 60.042 37.037 0.00 0.00 36.64 3.57
1460 5504 4.449068 CGATTCGGTAGATTTGGATTCCTG 59.551 45.833 3.95 0.00 0.00 3.86
1475 5519 3.452755 TCATAACATGAGCGATTCGGT 57.547 42.857 11.02 11.02 41.33 4.69
1536 5580 6.036408 CGATCTGAATGCTACATGAAGAACAA 59.964 38.462 0.00 0.00 0.00 2.83
1615 5659 1.478654 CCGGGGGAAAATAGGGATGTG 60.479 57.143 0.00 0.00 0.00 3.21
1702 5746 4.263683 CCCTTGTTTCAAAGAGAGGAGGAT 60.264 45.833 0.00 0.00 0.00 3.24
1762 5806 9.415008 TCTAGAGATATGGTAATATGGAGAAGC 57.585 37.037 0.00 0.00 0.00 3.86
1887 5931 7.331026 TGAAACCTAGAAATCGATCACTGATT 58.669 34.615 0.00 0.00 37.65 2.57
2053 6097 7.682787 ATGGGGATGGTGAGAATAGATATAC 57.317 40.000 0.00 0.00 0.00 1.47
2061 6105 3.397527 ACACTATGGGGATGGTGAGAAT 58.602 45.455 5.65 0.00 36.65 2.40
2105 6149 9.096823 TCATAACCATAGAATACGACCCTAATT 57.903 33.333 0.00 0.00 0.00 1.40
2140 6184 6.978343 TCGACGGAATCAAAAAGACATATT 57.022 33.333 0.00 0.00 0.00 1.28
2197 6241 3.089874 AGCAAGGCATAGCGGGGA 61.090 61.111 0.00 0.00 35.48 4.81
2202 6246 6.428159 ACATTAGTATTACAGCAAGGCATAGC 59.572 38.462 0.00 0.00 0.00 2.97
2214 6258 9.417561 AGTAGCCTAACAGACATTAGTATTACA 57.582 33.333 0.00 0.00 31.29 2.41
2220 6264 6.437793 AGAACAGTAGCCTAACAGACATTAGT 59.562 38.462 0.00 0.00 31.29 2.24
2221 6265 6.868622 AGAACAGTAGCCTAACAGACATTAG 58.131 40.000 0.00 0.00 32.78 1.73
2222 6266 6.127423 GGAGAACAGTAGCCTAACAGACATTA 60.127 42.308 0.00 0.00 0.00 1.90
2223 6267 5.337652 GGAGAACAGTAGCCTAACAGACATT 60.338 44.000 0.00 0.00 0.00 2.71
2224 6268 4.160626 GGAGAACAGTAGCCTAACAGACAT 59.839 45.833 0.00 0.00 0.00 3.06
2225 6269 3.510360 GGAGAACAGTAGCCTAACAGACA 59.490 47.826 0.00 0.00 0.00 3.41
2226 6270 3.764972 AGGAGAACAGTAGCCTAACAGAC 59.235 47.826 0.00 0.00 0.00 3.51
2227 6271 4.048970 AGGAGAACAGTAGCCTAACAGA 57.951 45.455 0.00 0.00 0.00 3.41
2228 6272 6.322712 AGAATAGGAGAACAGTAGCCTAACAG 59.677 42.308 0.00 0.00 36.65 3.16
2229 6273 6.195700 AGAATAGGAGAACAGTAGCCTAACA 58.804 40.000 0.00 0.00 36.65 2.41
2230 6274 6.548251 AGAGAATAGGAGAACAGTAGCCTAAC 59.452 42.308 0.00 0.00 36.65 2.34
2231 6275 6.674573 AGAGAATAGGAGAACAGTAGCCTAA 58.325 40.000 0.00 0.00 36.65 2.69
2232 6276 6.268855 AGAGAATAGGAGAACAGTAGCCTA 57.731 41.667 0.00 0.00 37.40 3.93
2233 6277 5.137412 AGAGAATAGGAGAACAGTAGCCT 57.863 43.478 0.00 0.00 34.56 4.58
2234 6278 5.596845 CAAGAGAATAGGAGAACAGTAGCC 58.403 45.833 0.00 0.00 0.00 3.93
2235 6279 5.047188 GCAAGAGAATAGGAGAACAGTAGC 58.953 45.833 0.00 0.00 0.00 3.58
2236 6280 6.214191 TGCAAGAGAATAGGAGAACAGTAG 57.786 41.667 0.00 0.00 0.00 2.57
2237 6281 6.014584 TGTTGCAAGAGAATAGGAGAACAGTA 60.015 38.462 0.00 0.00 0.00 2.74
2238 6282 5.221722 TGTTGCAAGAGAATAGGAGAACAGT 60.222 40.000 0.00 0.00 0.00 3.55
2239 6283 5.240891 TGTTGCAAGAGAATAGGAGAACAG 58.759 41.667 0.00 0.00 0.00 3.16
2240 6284 5.227569 TGTTGCAAGAGAATAGGAGAACA 57.772 39.130 0.00 0.00 0.00 3.18
2241 6285 5.391416 GCTTGTTGCAAGAGAATAGGAGAAC 60.391 44.000 12.45 0.00 42.31 3.01
2242 6286 4.697352 GCTTGTTGCAAGAGAATAGGAGAA 59.303 41.667 12.45 0.00 42.31 2.87
2243 6287 4.256920 GCTTGTTGCAAGAGAATAGGAGA 58.743 43.478 12.45 0.00 42.31 3.71
2244 6288 3.063180 CGCTTGTTGCAAGAGAATAGGAG 59.937 47.826 12.45 0.15 43.06 3.69
2245 6289 3.002791 CGCTTGTTGCAAGAGAATAGGA 58.997 45.455 12.45 0.00 43.06 2.94
2246 6290 2.476854 GCGCTTGTTGCAAGAGAATAGG 60.477 50.000 14.89 0.00 43.06 2.57
2247 6291 2.160219 TGCGCTTGTTGCAAGAGAATAG 59.840 45.455 9.73 1.82 43.06 1.73
2248 6292 2.150390 TGCGCTTGTTGCAAGAGAATA 58.850 42.857 9.73 0.39 43.06 1.75
2249 6293 0.953727 TGCGCTTGTTGCAAGAGAAT 59.046 45.000 9.73 0.00 43.06 2.40
2250 6294 0.737804 TTGCGCTTGTTGCAAGAGAA 59.262 45.000 9.73 3.32 46.62 2.87
2251 6295 2.403024 TTGCGCTTGTTGCAAGAGA 58.597 47.368 9.73 0.00 46.62 3.10
2256 6300 2.832661 AGGGTTGCGCTTGTTGCA 60.833 55.556 9.73 0.00 43.06 4.08
2257 6301 2.050077 GAGGGTTGCGCTTGTTGC 60.050 61.111 9.73 0.00 38.57 4.17
2258 6302 2.252260 CGAGGGTTGCGCTTGTTG 59.748 61.111 9.73 0.00 0.00 3.33
2259 6303 2.203153 ACGAGGGTTGCGCTTGTT 60.203 55.556 9.73 0.00 37.71 2.83
2260 6304 2.660258 AAGACGAGGGTTGCGCTTGT 62.660 55.000 9.73 5.89 42.50 3.16
2261 6305 1.507141 AAAGACGAGGGTTGCGCTTG 61.507 55.000 9.73 0.00 34.51 4.01
2262 6306 0.034337 TAAAGACGAGGGTTGCGCTT 59.966 50.000 9.73 0.00 0.00 4.68
2263 6307 0.389948 CTAAAGACGAGGGTTGCGCT 60.390 55.000 9.73 0.00 0.00 5.92
2264 6308 0.669625 ACTAAAGACGAGGGTTGCGC 60.670 55.000 0.00 0.00 0.00 6.09
2265 6309 1.459592 CAACTAAAGACGAGGGTTGCG 59.540 52.381 0.00 0.00 32.50 4.85
2267 6311 1.804748 GGCAACTAAAGACGAGGGTTG 59.195 52.381 0.00 0.00 39.83 3.77
2268 6312 1.418637 TGGCAACTAAAGACGAGGGTT 59.581 47.619 0.00 0.00 37.61 4.11
2269 6313 1.053424 TGGCAACTAAAGACGAGGGT 58.947 50.000 0.00 0.00 37.61 4.34
2270 6314 1.002087 AGTGGCAACTAAAGACGAGGG 59.998 52.381 0.00 0.00 33.79 4.30
2271 6315 2.457366 AGTGGCAACTAAAGACGAGG 57.543 50.000 0.00 0.00 33.79 4.63
2272 6316 4.744570 TCATAGTGGCAACTAAAGACGAG 58.255 43.478 4.72 0.00 42.17 4.18
2273 6317 4.794278 TCATAGTGGCAACTAAAGACGA 57.206 40.909 4.72 0.00 42.17 4.20
2274 6318 6.422776 AATTCATAGTGGCAACTAAAGACG 57.577 37.500 4.72 0.00 42.17 4.18
2275 6319 7.029563 CCAAATTCATAGTGGCAACTAAAGAC 58.970 38.462 4.72 0.00 42.17 3.01
2276 6320 6.945435 TCCAAATTCATAGTGGCAACTAAAGA 59.055 34.615 4.72 3.91 42.17 2.52
2277 6321 7.156876 TCCAAATTCATAGTGGCAACTAAAG 57.843 36.000 4.72 1.36 42.17 1.85
2278 6322 7.375053 GTTCCAAATTCATAGTGGCAACTAAA 58.625 34.615 4.72 0.00 42.17 1.85
2279 6323 6.071616 GGTTCCAAATTCATAGTGGCAACTAA 60.072 38.462 4.72 0.00 42.17 2.24
2280 6324 5.417580 GGTTCCAAATTCATAGTGGCAACTA 59.582 40.000 2.71 2.71 43.04 2.24
2281 6325 4.220602 GGTTCCAAATTCATAGTGGCAACT 59.779 41.667 0.00 0.00 40.67 3.16
2282 6326 4.494484 GGTTCCAAATTCATAGTGGCAAC 58.506 43.478 0.00 0.00 32.10 4.17
2283 6327 3.513515 GGGTTCCAAATTCATAGTGGCAA 59.486 43.478 0.00 0.00 32.10 4.52
2284 6328 3.096092 GGGTTCCAAATTCATAGTGGCA 58.904 45.455 0.00 0.00 32.10 4.92
2285 6329 3.131046 CAGGGTTCCAAATTCATAGTGGC 59.869 47.826 0.00 0.00 32.10 5.01
2286 6330 4.599041 TCAGGGTTCCAAATTCATAGTGG 58.401 43.478 0.00 0.00 0.00 4.00
2287 6331 5.476599 TGTTCAGGGTTCCAAATTCATAGTG 59.523 40.000 0.00 0.00 0.00 2.74
2288 6332 5.640147 TGTTCAGGGTTCCAAATTCATAGT 58.360 37.500 0.00 0.00 0.00 2.12
2289 6333 5.945784 TCTGTTCAGGGTTCCAAATTCATAG 59.054 40.000 0.00 0.00 0.00 2.23
2290 6334 5.710099 GTCTGTTCAGGGTTCCAAATTCATA 59.290 40.000 0.00 0.00 0.00 2.15
2291 6335 4.524328 GTCTGTTCAGGGTTCCAAATTCAT 59.476 41.667 0.00 0.00 0.00 2.57
2292 6336 3.888930 GTCTGTTCAGGGTTCCAAATTCA 59.111 43.478 0.00 0.00 0.00 2.57
2293 6337 3.255888 GGTCTGTTCAGGGTTCCAAATTC 59.744 47.826 0.00 0.00 0.00 2.17
2294 6338 3.230976 GGTCTGTTCAGGGTTCCAAATT 58.769 45.455 0.00 0.00 0.00 1.82
2295 6339 2.814097 CGGTCTGTTCAGGGTTCCAAAT 60.814 50.000 0.00 0.00 0.00 2.32
2296 6340 1.476110 CGGTCTGTTCAGGGTTCCAAA 60.476 52.381 0.00 0.00 0.00 3.28
2297 6341 0.107831 CGGTCTGTTCAGGGTTCCAA 59.892 55.000 0.00 0.00 0.00 3.53
2298 6342 1.752198 CGGTCTGTTCAGGGTTCCA 59.248 57.895 0.00 0.00 0.00 3.53
2299 6343 1.671379 GCGGTCTGTTCAGGGTTCC 60.671 63.158 0.00 0.00 0.00 3.62
2300 6344 1.671379 GGCGGTCTGTTCAGGGTTC 60.671 63.158 0.00 0.00 0.00 3.62
2301 6345 2.430367 GGCGGTCTGTTCAGGGTT 59.570 61.111 0.00 0.00 0.00 4.11
2302 6346 4.003788 CGGCGGTCTGTTCAGGGT 62.004 66.667 0.00 0.00 0.00 4.34
2303 6347 4.760047 CCGGCGGTCTGTTCAGGG 62.760 72.222 19.97 0.00 0.00 4.45
2304 6348 4.003788 ACCGGCGGTCTGTTCAGG 62.004 66.667 28.83 0.00 0.00 3.86
2305 6349 2.738521 CACCGGCGGTCTGTTCAG 60.739 66.667 31.82 12.75 31.02 3.02
2306 6350 1.746322 TAACACCGGCGGTCTGTTCA 61.746 55.000 30.49 17.81 31.02 3.18
2307 6351 0.600782 TTAACACCGGCGGTCTGTTC 60.601 55.000 30.49 0.00 31.02 3.18
2308 6352 0.601841 CTTAACACCGGCGGTCTGTT 60.602 55.000 31.82 30.53 31.02 3.16
2309 6353 1.005394 CTTAACACCGGCGGTCTGT 60.005 57.895 31.82 22.82 31.02 3.41
2310 6354 2.388232 GCTTAACACCGGCGGTCTG 61.388 63.158 31.82 22.06 31.02 3.51
2311 6355 2.047560 GCTTAACACCGGCGGTCT 60.048 61.111 31.82 21.64 31.02 3.85
2312 6356 3.122971 GGCTTAACACCGGCGGTC 61.123 66.667 31.82 17.00 31.02 4.79
2319 6363 1.221021 CTCCCTCCGGCTTAACACC 59.779 63.158 0.00 0.00 0.00 4.16
2320 6364 1.221021 CCTCCCTCCGGCTTAACAC 59.779 63.158 0.00 0.00 0.00 3.32
2321 6365 0.976073 CTCCTCCCTCCGGCTTAACA 60.976 60.000 0.00 0.00 0.00 2.41
2322 6366 0.686769 TCTCCTCCCTCCGGCTTAAC 60.687 60.000 0.00 0.00 0.00 2.01
2323 6367 0.397254 CTCTCCTCCCTCCGGCTTAA 60.397 60.000 0.00 0.00 0.00 1.85
2324 6368 1.230497 CTCTCCTCCCTCCGGCTTA 59.770 63.158 0.00 0.00 0.00 3.09
2325 6369 2.042435 CTCTCCTCCCTCCGGCTT 60.042 66.667 0.00 0.00 0.00 4.35
2326 6370 4.150454 CCTCTCCTCCCTCCGGCT 62.150 72.222 0.00 0.00 0.00 5.52
2327 6371 3.460478 ATCCTCTCCTCCCTCCGGC 62.460 68.421 0.00 0.00 0.00 6.13
2328 6372 1.532794 CATCCTCTCCTCCCTCCGG 60.533 68.421 0.00 0.00 0.00 5.14
2329 6373 0.539438 CTCATCCTCTCCTCCCTCCG 60.539 65.000 0.00 0.00 0.00 4.63
2330 6374 0.178935 CCTCATCCTCTCCTCCCTCC 60.179 65.000 0.00 0.00 0.00 4.30
2331 6375 0.831711 GCCTCATCCTCTCCTCCCTC 60.832 65.000 0.00 0.00 0.00 4.30
2332 6376 1.235696 GCCTCATCCTCTCCTCCCT 59.764 63.158 0.00 0.00 0.00 4.20
2333 6377 1.841103 GGCCTCATCCTCTCCTCCC 60.841 68.421 0.00 0.00 0.00 4.30
2334 6378 0.692419 TTGGCCTCATCCTCTCCTCC 60.692 60.000 3.32 0.00 0.00 4.30
2335 6379 0.758123 CTTGGCCTCATCCTCTCCTC 59.242 60.000 3.32 0.00 0.00 3.71
2336 6380 1.344191 GCTTGGCCTCATCCTCTCCT 61.344 60.000 3.32 0.00 0.00 3.69
2337 6381 1.148048 GCTTGGCCTCATCCTCTCC 59.852 63.158 3.32 0.00 0.00 3.71
2338 6382 1.148048 GGCTTGGCCTCATCCTCTC 59.852 63.158 3.32 0.00 46.69 3.20
2339 6383 3.329093 GGCTTGGCCTCATCCTCT 58.671 61.111 3.32 0.00 46.69 3.69
2349 6393 3.543641 GGGGCATGATGGCTTGGC 61.544 66.667 18.72 1.69 43.20 4.52
2350 6394 0.106066 TAAGGGGCATGATGGCTTGG 60.106 55.000 18.72 0.00 43.20 3.61
2351 6395 1.616865 CATAAGGGGCATGATGGCTTG 59.383 52.381 18.72 5.67 43.20 4.01
2352 6396 2.005370 CATAAGGGGCATGATGGCTT 57.995 50.000 18.72 8.68 43.20 4.35
2353 6397 0.541296 GCATAAGGGGCATGATGGCT 60.541 55.000 18.72 1.61 43.20 4.75
2354 6398 1.538687 GGCATAAGGGGCATGATGGC 61.539 60.000 10.91 10.91 42.88 4.40
2355 6399 0.901580 GGGCATAAGGGGCATGATGG 60.902 60.000 0.00 0.00 34.52 3.51
2356 6400 0.113776 AGGGCATAAGGGGCATGATG 59.886 55.000 0.00 0.00 34.52 3.07
2357 6401 0.113776 CAGGGCATAAGGGGCATGAT 59.886 55.000 0.00 0.00 46.49 2.45
2358 6402 1.538167 CAGGGCATAAGGGGCATGA 59.462 57.895 0.00 0.00 46.49 3.07
2359 6403 1.532316 CCAGGGCATAAGGGGCATG 60.532 63.158 0.00 0.00 43.67 4.06
2360 6404 2.782417 CCCAGGGCATAAGGGGCAT 61.782 63.158 0.00 0.00 38.98 4.40
2361 6405 3.428664 CCCAGGGCATAAGGGGCA 61.429 66.667 0.00 0.00 38.98 5.36
2382 6426 1.661197 GCCCATTGTTGCACGTGTG 60.661 57.895 18.38 6.00 0.00 3.82
2383 6427 2.727544 GCCCATTGTTGCACGTGT 59.272 55.556 18.38 0.00 0.00 4.49
2384 6428 2.428902 CGCCCATTGTTGCACGTG 60.429 61.111 12.28 12.28 0.00 4.49
2385 6429 3.669344 CCGCCCATTGTTGCACGT 61.669 61.111 0.00 0.00 0.00 4.49
2386 6430 4.418401 CCCGCCCATTGTTGCACG 62.418 66.667 0.00 0.00 0.00 5.34
2387 6431 2.988684 TCCCGCCCATTGTTGCAC 60.989 61.111 0.00 0.00 0.00 4.57
2388 6432 2.988684 GTCCCGCCCATTGTTGCA 60.989 61.111 0.00 0.00 0.00 4.08
2389 6433 2.093537 TTTGTCCCGCCCATTGTTGC 62.094 55.000 0.00 0.00 0.00 4.17
2390 6434 0.038343 CTTTGTCCCGCCCATTGTTG 60.038 55.000 0.00 0.00 0.00 3.33
2391 6435 1.184970 CCTTTGTCCCGCCCATTGTT 61.185 55.000 0.00 0.00 0.00 2.83
2392 6436 1.606313 CCTTTGTCCCGCCCATTGT 60.606 57.895 0.00 0.00 0.00 2.71
2393 6437 2.350458 CCCTTTGTCCCGCCCATTG 61.350 63.158 0.00 0.00 0.00 2.82
2394 6438 2.037208 CCCTTTGTCCCGCCCATT 59.963 61.111 0.00 0.00 0.00 3.16
2395 6439 3.264845 ACCCTTTGTCCCGCCCAT 61.265 61.111 0.00 0.00 0.00 4.00
2396 6440 3.961414 GACCCTTTGTCCCGCCCA 61.961 66.667 0.00 0.00 38.09 5.36
2400 6444 3.659089 ATCGCGACCCTTTGTCCCG 62.659 63.158 12.93 0.00 44.65 5.14
2401 6445 1.814169 GATCGCGACCCTTTGTCCC 60.814 63.158 12.93 0.00 41.18 4.46
2402 6446 0.806492 GAGATCGCGACCCTTTGTCC 60.806 60.000 12.93 0.00 41.18 4.02
2403 6447 2.666989 GAGATCGCGACCCTTTGTC 58.333 57.895 12.93 2.57 40.81 3.18
2404 6448 4.913126 GAGATCGCGACCCTTTGT 57.087 55.556 12.93 0.00 0.00 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.