AutoCloner

Multiple sequence alignment - TraesCS7D01G138300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS7D01G138300	chr7D	100.000	2517	0	0	1	2517	88646227	88643711	0.000000e+00	4649
1	TraesCS7D01G138300	chr7D	95.858	845	34	1	1	845	231604865	231605708	0.000000e+00	1365
2	TraesCS7D01G138300	chr7D	97.351	302	8	0	2116	2417	77247710	77247409	4.800000e-142	514
3	TraesCS7D01G138300	chr7D	97.351	302	8	0	2116	2417	231532595	231532294	4.800000e-142	514
4	TraesCS7D01G138300	chr7D	97.049	305	8	1	2114	2417	631660170	631659866	1.730000e-141	512
5	TraesCS7D01G138300	chr7D	96.903	226	7	0	1604	1829	631578938	631578713	1.830000e-101	379
6	TraesCS7D01G138300	chr7D	97.248	109	3	0	2409	2517	231595540	231595432	4.280000e-43	185
7	TraesCS7D01G138300	chr3D	96.807	971	29	2	861	1830	589259947	589258978	0.000000e+00	1620
8	TraesCS7D01G138300	chr2A	96.708	972	29	3	861	1830	726902875	726901905	0.000000e+00	1615
9	TraesCS7D01G138300	chr2A	95.740	845	36	0	1	845	726903402	726904246	0.000000e+00	1362
10	TraesCS7D01G138300	chr2A	97.351	302	8	0	2116	2417	726904996	726905297	4.800000e-142	514
11	TraesCS7D01G138300	chr2A	97.527	283	6	1	1833	2114	651438833	651439115	1.350000e-132	483
12	TraesCS7D01G138300	chr2A	97.527	283	6	1	1833	2114	726901531	726901249	1.350000e-132	483
13	TraesCS7D01G138300	chr2D	96.704	971	29	3	861	1829	591989253	591990222	0.000000e+00	1613
14	TraesCS7D01G138300	chr2D	95.858	845	35	0	1	845	591987662	591986818	0.000000e+00	1367
15	TraesCS7D01G138300	chr2D	95.621	845	37	0	1	845	272809193	272810037	0.000000e+00	1356
16	TraesCS7D01G138300	chr1A	96.506	973	30	3	861	1830	554463821	554464792	0.000000e+00	1605
17	TraesCS7D01G138300	chr1A	97.248	109	3	0	2409	2517	532074811	532074703	4.280000e-43	185
18	TraesCS7D01G138300	chr7A	96.498	971	32	2	861	1830	258307233	258306264	0.000000e+00	1604
19	TraesCS7D01G138300	chr3B	96.502	972	31	3	861	1830	201571207	201570237	0.000000e+00	1604
20	TraesCS7D01G138300	chr3B	96.573	963	30	3	868	1828	201543106	201544067	0.000000e+00	1592
21	TraesCS7D01G138300	chr3B	95.266	845	40	0	1	845	201571734	201572578	0.000000e+00	1339
22	TraesCS7D01G138300	chr3B	97.351	302	8	0	2116	2417	39807441	39807742	4.800000e-142	514
23	TraesCS7D01G138300	chr7B	96.498	971	31	3	861	1829	662730494	662731463	0.000000e+00	1602
24	TraesCS7D01G138300	chr7B	96.091	972	35	3	861	1830	663095845	663094875	0.000000e+00	1581
25	TraesCS7D01G138300	chr7B	95.740	845	36	0	1	845	663096372	663097216	0.000000e+00	1362
26	TraesCS7D01G138300	chr7B	97.527	283	6	1	1833	2114	662731837	662732119	1.350000e-132	483
27	TraesCS7D01G138300	chr3A	95.740	845	36	0	1	845	66002080	66002924	0.000000e+00	1362
28	TraesCS7D01G138300	chr3A	97.527	283	6	1	1833	2114	66000556	66000274	1.350000e-132	483
29	TraesCS7D01G138300	chr3A	97.527	283	6	1	1833	2114	695635323	695635605	1.350000e-132	483
30	TraesCS7D01G138300	chr5D	95.503	845	37	1	1	845	503248324	503247481	0.000000e+00	1349
31	TraesCS7D01G138300	chr5D	95.503	845	37	1	1	845	503261724	503262567	0.000000e+00	1349
32	TraesCS7D01G138300	chr5D	97.351	302	8	0	2116	2417	503263317	503263618	4.800000e-142	514
33	TraesCS7D01G138300	chr5D	97.173	283	7	1	1833	2114	503250194	503250476	6.300000e-131	477
34	TraesCS7D01G138300	chr5D	97.173	283	7	1	1833	2114	503259853	503259571	6.300000e-131	477
35	TraesCS7D01G138300	chr5D	97.248	109	3	0	2409	2517	432436374	432436266	4.280000e-43	185
36	TraesCS7D01G138300	chr5D	97.248	109	3	0	2409	2517	503246392	503246284	4.280000e-43	185
37	TraesCS7D01G138300	chr5D	97.248	109	3	0	2409	2517	503263656	503263764	4.280000e-43	185
38	TraesCS7D01G138300	chr2B	97.351	302	8	0	2116	2417	1452962	1453263	4.800000e-142	514
39	TraesCS7D01G138300	chr6D	97.324	299	8	0	2116	2414	389244363	389244661	2.230000e-140	508
40	TraesCS7D01G138300	chr6D	97.248	109	3	0	2409	2517	389244702	389244810	4.280000e-43	185
41	TraesCS7D01G138300	chr1D	97.020	302	9	0	2116	2417	68410489	68410188	2.230000e-140	508
42	TraesCS7D01G138300	chr1D	97.527	283	6	1	1833	2114	254530530	254530812	1.350000e-132	483
43	TraesCS7D01G138300	chr1D	97.248	109	3	0	2409	2517	254380881	254380989	4.280000e-43	185
44	TraesCS7D01G138300	chr1D	97.248	109	3	0	2409	2517	459903597	459903705	4.280000e-43	185
45	TraesCS7D01G138300	chr6B	97.173	283	7	1	1833	2114	450084726	450085008	6.300000e-131	477
46	TraesCS7D01G138300	chrUn	97.248	109	3	0	2409	2517	365940216	365940108	4.280000e-43	185

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS7D01G138300	chr7D	88643711	88646227	2516	True	4649.000000	4649	100.000000	1	2517	1	chr7D.!!$R2	2516
1	TraesCS7D01G138300	chr7D	231604865	231605708	843	False	1365.000000	1365	95.858000	1	845	1	chr7D.!!$F1	844
2	TraesCS7D01G138300	chr3D	589258978	589259947	969	True	1620.000000	1620	96.807000	861	1830	1	chr3D.!!$R1	969
3	TraesCS7D01G138300	chr2A	726901249	726902875	1626	True	1049.000000	1615	97.117500	861	2114	2	chr2A.!!$R1	1253
4	TraesCS7D01G138300	chr2A	726903402	726905297	1895	False	938.000000	1362	96.545500	1	2417	2	chr2A.!!$F2	2416
5	TraesCS7D01G138300	chr2D	591989253	591990222	969	False	1613.000000	1613	96.704000	861	1829	1	chr2D.!!$F2	968
6	TraesCS7D01G138300	chr2D	591986818	591987662	844	True	1367.000000	1367	95.858000	1	845	1	chr2D.!!$R1	844
7	TraesCS7D01G138300	chr2D	272809193	272810037	844	False	1356.000000	1356	95.621000	1	845	1	chr2D.!!$F1	844
8	TraesCS7D01G138300	chr1A	554463821	554464792	971	False	1605.000000	1605	96.506000	861	1830	1	chr1A.!!$F1	969
9	TraesCS7D01G138300	chr7A	258306264	258307233	969	True	1604.000000	1604	96.498000	861	1830	1	chr7A.!!$R1	969
10	TraesCS7D01G138300	chr3B	201570237	201571207	970	True	1604.000000	1604	96.502000	861	1830	1	chr3B.!!$R1	969
11	TraesCS7D01G138300	chr3B	201543106	201544067	961	False	1592.000000	1592	96.573000	868	1828	1	chr3B.!!$F2	960
12	TraesCS7D01G138300	chr3B	201571734	201572578	844	False	1339.000000	1339	95.266000	1	845	1	chr3B.!!$F3	844
13	TraesCS7D01G138300	chr7B	663094875	663095845	970	True	1581.000000	1581	96.091000	861	1830	1	chr7B.!!$R1	969
14	TraesCS7D01G138300	chr7B	663096372	663097216	844	False	1362.000000	1362	95.740000	1	845	1	chr7B.!!$F1	844
15	TraesCS7D01G138300	chr7B	662730494	662732119	1625	False	1042.500000	1602	97.012500	861	2114	2	chr7B.!!$F2	1253
16	TraesCS7D01G138300	chr3A	66002080	66002924	844	False	1362.000000	1362	95.740000	1	845	1	chr3A.!!$F1	844
17	TraesCS7D01G138300	chr5D	503246284	503248324	2040	True	767.000000	1349	96.375500	1	2517	2	chr5D.!!$R3	2516
18	TraesCS7D01G138300	chr5D	503261724	503263764	2040	False	682.666667	1349	96.700667	1	2517	3	chr5D.!!$F2	2516

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
117	118	0.037232	GCGCTTGGTACTCAGACCTT	60.037	55.0	0.0	0.0	40.46	3.5	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1831	2174	0.510359	CGTTCTGAGCTGTGAAGTGC	59.49	55.0	0.0	0.0	0.0	4.4	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
96	97	0.460987	GGCTCATACTTCAGCGCTGT	60.461	55.000	34.70	19.94	36.41	4.40
111	112	0.108804	GCTGTAGCGCTTGGTACTCA	60.109	55.000	18.68	3.33	44.85	3.41
117	118	0.037232	GCGCTTGGTACTCAGACCTT	60.037	55.000	0.00	0.00	40.46	3.50
187	188	3.753272	CACCTTGTGTCCTCAAACCTATG	59.247	47.826	0.00	0.00	0.00	2.23
189	190	4.104102	ACCTTGTGTCCTCAAACCTATGAA	59.896	41.667	0.00	0.00	0.00	2.57
253	254	6.328148	CCAACAAGGGGTAGTACAGGAATATA	59.672	42.308	2.06	0.00	0.00	0.86
296	297	1.486726	CCTTTCGGCCTGATCTTAGGT	59.513	52.381	0.00	0.00	40.11	3.08
383	384	7.827819	TCTCACCAATATTTTCGTTACTCAG	57.172	36.000	0.00	0.00	0.00	3.35
449	450	0.902531	CTTCCCTCTAAGGCGGAACA	59.097	55.000	0.00	0.00	32.73	3.18
459	460	1.988406	GGCGGAACACTCCCCTACT	60.988	63.158	0.00	0.00	38.71	2.57
465	466	0.537188	AACACTCCCCTACTGATGCG	59.463	55.000	0.00	0.00	0.00	4.73
585	587	3.705072	GCTACTTCTAGGCAAACCTCCTA	59.295	47.826	0.00	0.00	46.34	2.94
600	602	1.002430	CTCCTAGCTGTCTTTGCACCA	59.998	52.381	0.00	0.00	0.00	4.17
631	633	5.823045	CCTTTATCACTGAGGGGTCATTTAC	59.177	44.000	0.00	0.00	0.00	2.01
654	656	1.207791	CCTTAGCTGGTGATCTGGGT	58.792	55.000	0.00	0.00	0.00	4.51
744	746	9.799106	ATTTTTGGGTCATATCTAGTATTCAGG	57.201	33.333	0.00	0.00	0.00	3.86
754	756	4.101114	TCTAGTATTCAGGGTTTGCCTCA	58.899	43.478	0.00	0.00	34.45	3.86
771	773	0.320858	TCAATTTGGTACCGCTCGCA	60.321	50.000	7.57	0.00	0.00	5.10
810	812	2.772515	GTGCTTTACCCCTAGATGTCCT	59.227	50.000	0.00	0.00	0.00	3.85
845	847	0.672401	TCAACGCATTTCGGGGAGAC	60.672	55.000	0.00	0.00	43.86	3.36
846	848	0.673644	CAACGCATTTCGGGGAGACT	60.674	55.000	0.00	0.00	43.86	3.24
847	849	0.673644	AACGCATTTCGGGGAGACTG	60.674	55.000	0.00	0.00	43.86	3.51
848	850	1.079127	CGCATTTCGGGGAGACTGT	60.079	57.895	0.00	0.00	33.78	3.55
849	851	0.673644	CGCATTTCGGGGAGACTGTT	60.674	55.000	0.00	0.00	33.78	3.16
850	852	1.534729	GCATTTCGGGGAGACTGTTT	58.465	50.000	0.00	0.00	0.00	2.83
852	854	2.351738	GCATTTCGGGGAGACTGTTTTG	60.352	50.000	0.00	0.00	0.00	2.44
854	856	0.841289	TTCGGGGAGACTGTTTTGGT	59.159	50.000	0.00	0.00	0.00	3.67
855	857	0.107831	TCGGGGAGACTGTTTTGGTG	59.892	55.000	0.00	0.00	0.00	4.17
856	858	1.515521	CGGGGAGACTGTTTTGGTGC	61.516	60.000	0.00	0.00	0.00	5.01
857	859	1.515521	GGGGAGACTGTTTTGGTGCG	61.516	60.000	0.00	0.00	0.00	5.34
858	860	1.515521	GGGAGACTGTTTTGGTGCGG	61.516	60.000	0.00	0.00	0.00	5.69
859	861	1.515521	GGAGACTGTTTTGGTGCGGG	61.516	60.000	0.00	0.00	0.00	6.13
860	862	2.130073	GAGACTGTTTTGGTGCGGGC	62.130	60.000	0.00	0.00	0.00	6.13
861	863	2.123897	ACTGTTTTGGTGCGGGCT	60.124	55.556	0.00	0.00	0.00	5.19
862	864	2.336088	CTGTTTTGGTGCGGGCTG	59.664	61.111	0.00	0.00	0.00	4.85
863	865	3.846602	CTGTTTTGGTGCGGGCTGC	62.847	63.158	12.43	12.43	46.70	5.25
923	928	1.900351	CCCGAGCCATCAGTGAGAA	59.100	57.895	0.00	0.00	0.00	2.87
1008	1013	2.504175	GGTAGACAGTTTCTATGGGGCA	59.496	50.000	0.00	0.00	39.13	5.36
1146	1151	1.336609	ACGAAAGTCGGCCTTAGTGAC	60.337	52.381	0.00	0.00	45.59	3.67
1148	1153	1.275573	GAAAGTCGGCCTTAGTGACCT	59.724	52.381	0.00	0.00	33.09	3.85
1151	1156	0.824759	GTCGGCCTTAGTGACCTGAT	59.175	55.000	0.00	0.00	0.00	2.90
1210	1215	4.816126	AGGTACTCTAGGGATAACATGCA	58.184	43.478	0.00	0.00	0.00	3.96
1301	1306	2.640826	CTGTAGGTGGTTCCAAGGGTTA	59.359	50.000	0.00	0.00	39.02	2.85
1306	1311	1.631898	GTGGTTCCAAGGGTTAGGCTA	59.368	52.381	0.00	0.00	0.00	3.93
1549	1892	3.025978	CAAGATGAGTGCTCTCTCCTCT	58.974	50.000	16.23	12.10	39.72	3.69
1557	1900	0.738389	GCTCTCTCCTCTGACTTCCG	59.262	60.000	0.00	0.00	0.00	4.30
1623	1966	0.916086	ATACGGGGATGGAGCAACAA	59.084	50.000	0.00	0.00	0.00	2.83
1657	2000	0.666913	GATAAGGTAGCGGCGAGACA	59.333	55.000	12.98	0.00	0.00	3.41
1688	2031	4.706842	AATAGGTGTCAAGTGGAAGTGT	57.293	40.909	0.00	0.00	0.00	3.55
1808	2151	8.853126	TCTTCATTGTTCAACTCTTTGATGAAT	58.147	29.630	0.00	0.00	41.50	2.57
2114	2866	8.705594	AGCTATTGAACTTAGGTATGCTCTTTA	58.294	33.333	0.00	0.00	0.00	1.85
2138	2944	1.154413	AAGCATTTCGTCGCTTGCG	60.154	52.632	8.87	8.87	46.41	4.85
2150	2956	2.358737	CTTGCGACGCCCTTCCTT	60.359	61.111	18.69	0.00	0.00	3.36
2360	3166	2.663188	CGGGCTGGAGATAAGCGC	60.663	66.667	0.00	0.00	46.82	5.92
2365	3171	0.179100	GCTGGAGATAAGCGCACTCA	60.179	55.000	11.47	3.62	33.00	3.41
2379	3185	1.800805	CACTCAAACCGCTGACATCT	58.199	50.000	0.00	0.00	0.00	2.90
2410	3216	3.721706	CCACCACCTCTCAGGCCC	61.722	72.222	0.00	0.00	39.63	5.80
2434	3286	4.440940	CCCCGAACACAGCTTAAAACTTTT	60.441	41.667	0.00	0.00	0.00	2.27

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
43	44	2.202676	GCTTCTCCACGAGGCTCG	60.203	66.667	33.42	33.42	46.93	5.03
96	97	0.815734	GGTCTGAGTACCAAGCGCTA	59.184	55.000	12.05	0.00	39.50	4.26
111	112	1.557269	AATGCCTCGAGCCAAGGTCT	61.557	55.000	6.99	0.00	42.71	3.85
117	118	0.615331	AGAGAAAATGCCTCGAGCCA	59.385	50.000	6.99	1.48	42.71	4.75
178	179	4.396166	AGCCGAAAGATGTTCATAGGTTTG	59.604	41.667	0.00	0.00	0.00	2.93
187	188	3.556365	GCTAGGTTAGCCGAAAGATGTTC	59.444	47.826	0.00	0.00	45.95	3.18
189	190	3.180891	GCTAGGTTAGCCGAAAGATGT	57.819	47.619	0.00	0.00	45.95	3.06
253	254	1.633774	AGTCGATGGACAACAGGTCT	58.366	50.000	10.69	0.00	45.92	3.85
296	297	0.618680	CCATGGAGGGTGAGTCAGGA	60.619	60.000	5.56	0.00	0.00	3.86
335	336	1.826340	AATGCCCCGAAAACCCAAGC	61.826	55.000	0.00	0.00	0.00	4.01
369	370	2.289195	TGTCGGCCTGAGTAACGAAAAT	60.289	45.455	0.00	0.00	37.08	1.82
425	426	1.084370	CGCCTTAGAGGGAAGCAACG	61.084	60.000	0.00	0.00	35.37	4.10
449	450	1.276622	AAACGCATCAGTAGGGGAGT	58.723	50.000	0.00	0.00	0.00	3.85
459	460	1.539388	GTGGGATGTCAAAACGCATCA	59.461	47.619	6.82	0.00	42.22	3.07
465	466	2.350772	CGAAGCTGTGGGATGTCAAAAC	60.351	50.000	0.00	0.00	0.00	2.43
546	548	3.651423	AGTAGCCACCCTTTAAAGAGTGT	59.349	43.478	23.37	12.02	33.43	3.55
585	587	1.103398	GTGGTGGTGCAAAGACAGCT	61.103	55.000	10.91	0.00	38.84	4.24
600	602	2.840651	CCTCAGTGATAAAGGAGGTGGT	59.159	50.000	0.00	0.00	41.58	4.16
621	623	1.963172	CTAAGGCCCGTAAATGACCC	58.037	55.000	0.00	0.00	0.00	4.46
631	633	1.227674	GATCACCAGCTAAGGCCCG	60.228	63.158	0.00	0.00	39.73	6.13
654	656	1.890489	TCATCGTCGAGAGGGAAACAA	59.110	47.619	0.00	0.00	0.00	2.83
744	746	2.352323	CGGTACCAAATTGAGGCAAACC	60.352	50.000	13.54	3.06	0.00	3.27
754	756	0.604243	TGTGCGAGCGGTACCAAATT	60.604	50.000	13.54	0.00	0.00	1.82
771	773	0.251165	ACTATTTTGGTGCGGGCTGT	60.251	50.000	0.00	0.00	0.00	4.40
783	785	6.970191	ACATCTAGGGGTAAAGCACTATTTT	58.030	36.000	0.00	0.00	0.00	1.82
845	847	2.336088	CAGCCCGCACCAAAACAG	59.664	61.111	0.00	0.00	0.00	3.16
846	848	3.910490	GCAGCCCGCACCAAAACA	61.910	61.111	0.00	0.00	41.79	2.83
860	862	0.037326	TTCCACCTAAGCTCGTGCAG	60.037	55.000	12.58	0.97	42.74	4.41
861	863	0.037326	CTTCCACCTAAGCTCGTGCA	60.037	55.000	12.58	0.00	42.74	4.57
862	864	0.741221	CCTTCCACCTAAGCTCGTGC	60.741	60.000	0.07	0.07	40.05	5.34
863	865	0.741221	GCCTTCCACCTAAGCTCGTG	60.741	60.000	0.00	0.00	0.00	4.35
864	866	1.597461	GCCTTCCACCTAAGCTCGT	59.403	57.895	0.00	0.00	0.00	4.18
865	867	1.519455	CGCCTTCCACCTAAGCTCG	60.519	63.158	0.00	0.00	0.00	5.03
866	868	0.249398	TTCGCCTTCCACCTAAGCTC	59.751	55.000	0.00	0.00	0.00	4.09
923	928	0.605589	CGAGCTCTTCCAGAGTGGTT	59.394	55.000	12.85	0.00	44.12	3.67
1008	1013	3.390311	CCGTTACCTTTTAGGAGGCCTAT	59.610	47.826	4.42	0.00	40.65	2.57
1146	1151	2.124983	CCACTCGGCACCATCAGG	60.125	66.667	0.00	0.00	42.21	3.86
1148	1153	1.296392	CTTCCACTCGGCACCATCA	59.704	57.895	0.00	0.00	0.00	3.07
1151	1156	3.636231	CCCTTCCACTCGGCACCA	61.636	66.667	0.00	0.00	0.00	4.17
1184	1189	7.054751	GCATGTTATCCCTAGAGTACCTTTTT	58.945	38.462	0.00	0.00	0.00	1.94
1190	1195	6.435904	AGATCTGCATGTTATCCCTAGAGTAC	59.564	42.308	0.00	0.00	0.00	2.73
1207	1212	1.556911	GACTCTTGGGGAAGATCTGCA	59.443	52.381	2.29	0.00	0.00	4.41
1210	1215	2.192263	GTGGACTCTTGGGGAAGATCT	58.808	52.381	0.00	0.00	0.00	2.75
1332	1337	4.202274	TGTCTCACGACATTCTAAACCCAA	60.202	41.667	0.00	0.00	44.85	4.12
1436	1708	2.613474	GGCACGATAACTGGTACACCAA	60.613	50.000	2.14	0.00	46.97	3.67
1619	1962	9.990868	ACCTTATCCTATTTCCATACTTTTGTT	57.009	29.630	0.00	0.00	0.00	2.83
1623	1966	8.095169	CGCTACCTTATCCTATTTCCATACTTT	58.905	37.037	0.00	0.00	0.00	2.66
1657	2000	5.048991	CACTTGACACCTATTTAAACGGCTT	60.049	40.000	5.50	0.00	0.00	4.35
1688	2031	2.224137	GCCTCAGCTGCATACATCACTA	60.224	50.000	9.47	0.00	35.50	2.74
1830	2173	1.871408	CGTTCTGAGCTGTGAAGTGCT	60.871	52.381	0.00	0.00	42.82	4.40
1831	2174	0.510359	CGTTCTGAGCTGTGAAGTGC	59.490	55.000	0.00	0.00	0.00	4.40
1975	2689	3.931247	CCCCGACACCGTGGTTCA	61.931	66.667	3.03	0.00	0.00	3.18
2138	2944	0.390472	CAGAGACAAGGAAGGGCGTC	60.390	60.000	0.00	0.00	0.00	5.19
2150	2956	0.708209	TACCTAGGCACCCAGAGACA	59.292	55.000	9.30	0.00	0.00	3.41
2176	2982	3.384789	GGTTCAAAAGAGGAAAGGCTTGT	59.615	43.478	0.00	0.00	0.00	3.16
2360	3166	1.462283	CAGATGTCAGCGGTTTGAGTG	59.538	52.381	0.00	0.00	0.00	3.51
2365	3171	1.073025	TGGCAGATGTCAGCGGTTT	59.927	52.632	0.00	0.00	0.00	3.27
2379	3185	1.151908	GGTGGTTTACCCTGTGGCA	59.848	57.895	0.00	0.00	44.15	4.92
2410	3216	1.268625	GTTTTAAGCTGTGTTCGGGGG	59.731	52.381	0.00	0.00	0.00	5.40
2427	3279	5.638234	GGAGAGCACAGTACGATAAAAGTTT	59.362	40.000	0.00	0.00	0.00	2.66
2434	3286	4.014406	TCTTTGGAGAGCACAGTACGATA	58.986	43.478	0.00	0.00	0.00	2.92
2474	3326	5.111293	CAACTCAGCACCTTTTGTTTTGAT	58.889	37.500	0.00	0.00	0.00	2.57

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.