Multiple sequence alignment - TraesCS7D01G138100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G138100 chr7D 100.000 2114 0 0 1 2114 88606444 88608557 0.000000e+00 3904
1 TraesCS7D01G138100 chr7D 93.573 389 17 4 1 382 556309129 556308742 6.540000e-160 573
2 TraesCS7D01G138100 chr7D 92.765 387 22 3 1 382 171327874 171328259 2.370000e-154 555
3 TraesCS7D01G138100 chr7D 92.765 387 22 3 1 382 171334669 171335054 2.370000e-154 555
4 TraesCS7D01G138100 chr7D 80.556 360 47 17 495 847 556307480 556307137 2.690000e-64 255
5 TraesCS7D01G138100 chr7D 94.483 145 6 2 713 856 556309316 556309459 2.730000e-54 222
6 TraesCS7D01G138100 chr7D 96.923 130 4 0 713 842 171327688 171327559 3.530000e-53 219
7 TraesCS7D01G138100 chr7D 96.154 130 5 0 713 842 171334483 171334354 1.640000e-51 213
8 TraesCS7D01G138100 chr2A 96.733 857 18 3 1268 2114 726900441 726901297 0.000000e+00 1419
9 TraesCS7D01G138100 chr7B 96.616 857 19 3 1268 2114 622431956 622432812 0.000000e+00 1413
10 TraesCS7D01G138100 chr7B 95.434 438 9 2 841 1267 386362936 386362499 0.000000e+00 688
11 TraesCS7D01G138100 chr7B 94.989 439 10 2 841 1267 262233991 262234429 0.000000e+00 678
12 TraesCS7D01G138100 chr3B 96.616 857 19 3 1268 2114 757830443 757831299 0.000000e+00 1413
13 TraesCS7D01G138100 chr3B 96.721 854 18 3 1271 2114 813250379 813249526 0.000000e+00 1413
14 TraesCS7D01G138100 chr3B 96.604 854 19 3 1271 2114 201545528 201544675 0.000000e+00 1408
15 TraesCS7D01G138100 chr3B 94.749 438 12 2 841 1267 201507113 201507550 0.000000e+00 671
16 TraesCS7D01G138100 chr3B 91.123 383 32 2 1 382 315388738 315389119 3.110000e-143 518
17 TraesCS7D01G138100 chr3A 96.616 857 19 3 1268 2114 65999466 66000322 0.000000e+00 1413
18 TraesCS7D01G138100 chr5D 96.499 857 20 3 1268 2114 503258763 503259619 0.000000e+00 1408
19 TraesCS7D01G138100 chr5D 94.989 439 10 2 841 1267 554200880 554201318 0.000000e+00 678
20 TraesCS7D01G138100 chr5D 94.989 439 9 3 841 1267 554200465 554200028 0.000000e+00 676
21 TraesCS7D01G138100 chr5D 94.508 437 14 2 841 1267 6207287 6206851 0.000000e+00 665
22 TraesCS7D01G138100 chr3D 96.604 854 19 3 1271 2114 589255651 589254798 0.000000e+00 1408
23 TraesCS7D01G138100 chr2D 96.604 854 19 3 1271 2114 591991683 591990830 0.000000e+00 1408
24 TraesCS7D01G138100 chr2D 91.239 468 31 1 381 838 46870054 46870521 1.380000e-176 628
25 TraesCS7D01G138100 chr6D 95.216 439 9 3 841 1267 431403679 431403241 0.000000e+00 684
26 TraesCS7D01G138100 chr6D 94.749 438 12 3 841 1267 431400561 431400998 0.000000e+00 671
27 TraesCS7D01G138100 chr6D 91.990 387 19 5 1 382 6238225 6237846 1.110000e-147 532
28 TraesCS7D01G138100 chr6D 90.840 393 24 5 1 382 50999751 50999360 1.120000e-142 516
29 TraesCS7D01G138100 chr6D 80.692 347 45 16 504 843 6236749 6236418 1.250000e-62 250
30 TraesCS7D01G138100 chr6D 96.875 128 4 0 713 840 6238412 6238539 4.570000e-52 215
31 TraesCS7D01G138100 chr1D 94.954 436 13 1 841 1267 254490235 254490670 0.000000e+00 675
32 TraesCS7D01G138100 chr1D 94.773 440 10 2 841 1267 394179450 394179889 0.000000e+00 673
33 TraesCS7D01G138100 chr1D 94.521 438 12 5 841 1267 483922422 483921986 0.000000e+00 665
34 TraesCS7D01G138100 chr1D 92.784 388 21 5 1 382 288098773 288099159 2.370000e-154 555
35 TraesCS7D01G138100 chrUn 94.318 440 12 2 841 1267 317472653 317472214 0.000000e+00 662
36 TraesCS7D01G138100 chrUn 94.886 352 6 2 841 1180 404958773 404959124 6.640000e-150 540
37 TraesCS7D01G138100 chr7A 92.228 386 23 5 3 382 78195870 78195486 6.640000e-150 540
38 TraesCS7D01G138100 chr7A 86.258 473 50 4 381 838 218243330 218243802 1.130000e-137 499
39 TraesCS7D01G138100 chr7A 79.320 353 51 16 495 840 78184157 78183820 5.870000e-56 228
40 TraesCS7D01G138100 chr1A 91.123 383 30 2 3 382 30359758 30360139 1.120000e-142 516
41 TraesCS7D01G138100 chr1A 85.294 476 53 7 381 840 524401114 524401588 1.900000e-130 475
42 TraesCS7D01G138100 chr4D 86.853 464 55 2 381 839 373808050 373808512 4.020000e-142 514
43 TraesCS7D01G138100 chr4B 86.134 476 51 4 381 841 42230947 42231422 1.130000e-137 499
44 TraesCS7D01G138100 chr5A 86.017 472 51 4 384 840 544506313 544505842 1.880000e-135 492
45 TraesCS7D01G138100 chr5A 80.260 461 82 7 389 840 140597469 140597009 2.600000e-89 339
46 TraesCS7D01G138100 chr6A 85.270 482 54 6 381 846 1955968 1956448 4.080000e-132 481
47 TraesCS7D01G138100 chr5B 85.412 473 52 6 384 840 643304766 643304295 1.900000e-130 475


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G138100 chr7D 88606444 88608557 2113 False 3904 3904 100.0000 1 2114 1 chr7D.!!$F1 2113
1 TraesCS7D01G138100 chr7D 556307137 556309129 1992 True 414 573 87.0645 1 847 2 chr7D.!!$R3 846
2 TraesCS7D01G138100 chr2A 726900441 726901297 856 False 1419 1419 96.7330 1268 2114 1 chr2A.!!$F1 846
3 TraesCS7D01G138100 chr7B 622431956 622432812 856 False 1413 1413 96.6160 1268 2114 1 chr7B.!!$F2 846
4 TraesCS7D01G138100 chr3B 757830443 757831299 856 False 1413 1413 96.6160 1268 2114 1 chr3B.!!$F3 846
5 TraesCS7D01G138100 chr3B 813249526 813250379 853 True 1413 1413 96.7210 1271 2114 1 chr3B.!!$R2 843
6 TraesCS7D01G138100 chr3B 201544675 201545528 853 True 1408 1408 96.6040 1271 2114 1 chr3B.!!$R1 843
7 TraesCS7D01G138100 chr3A 65999466 66000322 856 False 1413 1413 96.6160 1268 2114 1 chr3A.!!$F1 846
8 TraesCS7D01G138100 chr5D 503258763 503259619 856 False 1408 1408 96.4990 1268 2114 1 chr5D.!!$F1 846
9 TraesCS7D01G138100 chr3D 589254798 589255651 853 True 1408 1408 96.6040 1271 2114 1 chr3D.!!$R1 843
10 TraesCS7D01G138100 chr2D 591990830 591991683 853 True 1408 1408 96.6040 1271 2114 1 chr2D.!!$R1 843
11 TraesCS7D01G138100 chr6D 6236418 6238225 1807 True 391 532 86.3410 1 843 2 chr6D.!!$R3 842

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
453 1932 0.105039 AGATAGGCGGCGAGAAAAGG 59.895 55.0 12.98 0.0 0.0 3.11 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1254 2763 0.815095 CACCCCTAACCCGATTTTGC 59.185 55.0 0.0 0.0 0.0 3.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 0.108233 GGCTCTGCTCCAGTGAGAAG 60.108 60.000 0.00 0.00 44.71 2.85
30 31 1.220477 GCTCCAGTGAGAAGAGGGC 59.780 63.158 0.00 0.00 41.42 5.19
33 34 2.286523 CCAGTGAGAAGAGGGCGGT 61.287 63.158 0.00 0.00 0.00 5.68
128 129 4.315803 CTCCTCCGCGATATGGTAATTTT 58.684 43.478 8.23 0.00 0.00 1.82
165 166 4.018779 CCCAATCCTACTGTTTAGTTCCCA 60.019 45.833 0.00 0.00 38.36 4.37
168 169 7.343357 CCAATCCTACTGTTTAGTTCCCATTA 58.657 38.462 0.00 0.00 38.36 1.90
173 174 8.483758 TCCTACTGTTTAGTTCCCATTATTCTC 58.516 37.037 0.00 0.00 38.36 2.87
174 175 8.265055 CCTACTGTTTAGTTCCCATTATTCTCA 58.735 37.037 0.00 0.00 38.36 3.27
228 231 0.827368 CTAGGACCACAAGAGGAGCC 59.173 60.000 0.00 0.00 0.00 4.70
304 311 5.464722 AGTCATATGTCGATGTCAAAGATGC 59.535 40.000 1.90 0.00 0.00 3.91
396 1875 0.982852 TAGTGTGGCAGCTAGGGCAT 60.983 55.000 3.54 0.00 45.62 4.40
413 1892 1.377202 ATGGTACCAACGGCAGCAG 60.377 57.895 20.76 0.00 0.00 4.24
414 1893 1.836999 ATGGTACCAACGGCAGCAGA 61.837 55.000 20.76 0.00 0.00 4.26
415 1894 1.078426 GGTACCAACGGCAGCAGAT 60.078 57.895 7.15 0.00 0.00 2.90
440 1919 2.126307 CGCCGGCGATGAGATAGG 60.126 66.667 44.86 10.04 42.83 2.57
441 1920 2.433318 GCCGGCGATGAGATAGGC 60.433 66.667 12.58 0.00 37.61 3.93
443 1922 2.126307 CGGCGATGAGATAGGCGG 60.126 66.667 0.00 0.00 46.89 6.13
444 1923 2.433318 GGCGATGAGATAGGCGGC 60.433 66.667 0.00 0.00 41.85 6.53
446 1925 2.954611 CGATGAGATAGGCGGCGA 59.045 61.111 12.98 0.00 0.00 5.54
447 1926 1.154131 CGATGAGATAGGCGGCGAG 60.154 63.158 12.98 0.00 0.00 5.03
448 1927 1.578206 CGATGAGATAGGCGGCGAGA 61.578 60.000 12.98 0.00 0.00 4.04
449 1928 0.598562 GATGAGATAGGCGGCGAGAA 59.401 55.000 12.98 0.00 0.00 2.87
450 1929 1.000163 GATGAGATAGGCGGCGAGAAA 60.000 52.381 12.98 0.00 0.00 2.52
451 1930 0.821517 TGAGATAGGCGGCGAGAAAA 59.178 50.000 12.98 0.00 0.00 2.29
453 1932 0.105039 AGATAGGCGGCGAGAAAAGG 59.895 55.000 12.98 0.00 0.00 3.11
455 1934 2.942648 ATAGGCGGCGAGAAAAGGGC 62.943 60.000 12.98 0.00 0.00 5.19
457 1936 2.125269 GCGGCGAGAAAAGGGCTA 60.125 61.111 12.98 0.00 0.00 3.93
481 1960 2.665603 GAGGTGGAAGAGGCGCTT 59.334 61.111 7.64 2.19 40.25 4.68
482 1961 1.743252 GAGGTGGAAGAGGCGCTTG 60.743 63.158 8.61 0.00 36.83 4.01
483 1962 2.747855 GGTGGAAGAGGCGCTTGG 60.748 66.667 8.61 0.00 36.83 3.61
484 1963 2.747855 GTGGAAGAGGCGCTTGGG 60.748 66.667 8.61 0.00 36.83 4.12
485 1964 4.722700 TGGAAGAGGCGCTTGGGC 62.723 66.667 8.61 0.81 36.83 5.36
486 1965 4.722700 GGAAGAGGCGCTTGGGCA 62.723 66.667 8.61 0.00 45.36 5.36
488 1967 3.909086 GAAGAGGCGCTTGGGCAGT 62.909 63.158 8.61 0.00 45.36 4.40
494 1973 2.357517 CGCTTGGGCAGTCGTCTT 60.358 61.111 0.00 0.00 38.60 3.01
495 1974 2.383527 CGCTTGGGCAGTCGTCTTC 61.384 63.158 0.00 0.00 38.60 2.87
496 1975 2.035442 GCTTGGGCAGTCGTCTTCC 61.035 63.158 0.00 0.00 38.54 3.46
502 2008 4.052229 CAGTCGTCTTCCCGCGGT 62.052 66.667 26.12 0.00 0.00 5.68
508 2014 4.735132 TCTTCCCGCGGTGCTTCG 62.735 66.667 26.12 7.54 0.00 3.79
521 2027 2.510012 CTTCGCGGCAGATGAGCA 60.510 61.111 6.13 0.00 35.83 4.26
522 2028 2.806856 CTTCGCGGCAGATGAGCAC 61.807 63.158 6.13 0.00 35.83 4.40
523 2029 3.588057 TTCGCGGCAGATGAGCACA 62.588 57.895 6.13 0.00 35.83 4.57
559 2065 4.544689 CGACGGCGCCAGAGAGAG 62.545 72.222 28.98 10.77 0.00 3.20
566 2072 1.225983 CGCCAGAGAGAGGGAGAGA 59.774 63.158 0.00 0.00 0.00 3.10
568 2075 1.109323 GCCAGAGAGAGGGAGAGAGC 61.109 65.000 0.00 0.00 0.00 4.09
570 2077 0.180171 CAGAGAGAGGGAGAGAGCGA 59.820 60.000 0.00 0.00 0.00 4.93
572 2079 1.152963 AGAGAGGGAGAGAGCGAGC 60.153 63.158 0.00 0.00 0.00 5.03
581 2088 0.610509 AGAGAGCGAGCAGAAGACCA 60.611 55.000 0.00 0.00 0.00 4.02
583 2090 0.681733 AGAGCGAGCAGAAGACCAAA 59.318 50.000 0.00 0.00 0.00 3.28
585 2092 0.394565 AGCGAGCAGAAGACCAAAGT 59.605 50.000 0.00 0.00 0.00 2.66
588 2095 2.610727 GCGAGCAGAAGACCAAAGTACT 60.611 50.000 0.00 0.00 0.00 2.73
597 2104 3.256704 AGACCAAAGTACTGGGGAATGA 58.743 45.455 17.51 0.00 41.16 2.57
599 2106 2.308866 ACCAAAGTACTGGGGAATGAGG 59.691 50.000 17.51 1.28 41.16 3.86
601 2108 3.010138 CCAAAGTACTGGGGAATGAGGAA 59.990 47.826 7.18 0.00 32.32 3.36
606 2113 2.566746 ACTGGGGAATGAGGAAGACAT 58.433 47.619 0.00 0.00 0.00 3.06
608 2115 4.111577 ACTGGGGAATGAGGAAGACATAA 58.888 43.478 0.00 0.00 0.00 1.90
609 2116 4.540099 ACTGGGGAATGAGGAAGACATAAA 59.460 41.667 0.00 0.00 0.00 1.40
610 2117 4.855340 TGGGGAATGAGGAAGACATAAAC 58.145 43.478 0.00 0.00 0.00 2.01
611 2118 4.540099 TGGGGAATGAGGAAGACATAAACT 59.460 41.667 0.00 0.00 0.00 2.66
612 2119 5.126779 GGGGAATGAGGAAGACATAAACTC 58.873 45.833 0.00 0.00 0.00 3.01
615 2122 6.180472 GGAATGAGGAAGACATAAACTCCAA 58.820 40.000 0.00 0.00 0.00 3.53
619 2126 3.267031 AGGAAGACATAAACTCCAAGGGG 59.733 47.826 0.00 0.00 0.00 4.79
622 2129 2.092323 GACATAAACTCCAAGGGGCAC 58.908 52.381 0.00 0.00 0.00 5.01
628 2135 1.304713 CTCCAAGGGGCACATTGCT 60.305 57.895 8.09 0.00 44.28 3.91
631 2138 1.203112 TCCAAGGGGCACATTGCTTAA 60.203 47.619 8.09 0.00 44.28 1.85
634 2141 3.307621 CCAAGGGGCACATTGCTTAAAAT 60.308 43.478 8.09 0.00 44.28 1.82
635 2142 4.325972 CAAGGGGCACATTGCTTAAAATT 58.674 39.130 0.00 0.00 44.28 1.82
643 2150 4.987912 CACATTGCTTAAAATTCCAACCGT 59.012 37.500 0.00 0.00 0.00 4.83
647 2154 3.886505 TGCTTAAAATTCCAACCGTCAGT 59.113 39.130 0.00 0.00 0.00 3.41
648 2155 4.023536 TGCTTAAAATTCCAACCGTCAGTC 60.024 41.667 0.00 0.00 0.00 3.51
657 2164 2.125673 CCGTCAGTCGCGGGAAAT 60.126 61.111 6.13 0.00 44.98 2.17
747 2256 0.232303 GACCTCGCGTGAACAACTTG 59.768 55.000 10.21 0.00 0.00 3.16
825 2334 4.280436 TCAGAAAAGAATTAGGACCGCA 57.720 40.909 0.00 0.00 0.00 5.69
844 2353 5.183140 ACCGCACTTGCATTTTACTCTAATT 59.817 36.000 1.48 0.00 42.21 1.40
845 2354 6.373216 ACCGCACTTGCATTTTACTCTAATTA 59.627 34.615 1.48 0.00 42.21 1.40
846 2355 7.067008 ACCGCACTTGCATTTTACTCTAATTAT 59.933 33.333 1.48 0.00 42.21 1.28
847 2356 8.556194 CCGCACTTGCATTTTACTCTAATTATA 58.444 33.333 1.48 0.00 42.21 0.98
848 2357 9.929722 CGCACTTGCATTTTACTCTAATTATAA 57.070 29.630 1.48 0.00 42.21 0.98
882 2391 7.895975 GAAAAATCTTTCTTTGGGATTCCTG 57.104 36.000 2.01 0.00 38.35 3.86
883 2392 6.364568 AAAATCTTTCTTTGGGATTCCTGG 57.635 37.500 2.01 0.00 0.00 4.45
884 2393 2.807676 TCTTTCTTTGGGATTCCTGGC 58.192 47.619 2.01 0.00 0.00 4.85
885 2394 2.109834 TCTTTCTTTGGGATTCCTGGCA 59.890 45.455 2.01 0.00 0.00 4.92
886 2395 2.925966 TTCTTTGGGATTCCTGGCAT 57.074 45.000 2.01 0.00 0.00 4.40
887 2396 2.925966 TCTTTGGGATTCCTGGCATT 57.074 45.000 2.01 0.00 0.00 3.56
888 2397 2.738743 TCTTTGGGATTCCTGGCATTC 58.261 47.619 2.01 0.00 0.00 2.67
889 2398 2.312741 TCTTTGGGATTCCTGGCATTCT 59.687 45.455 2.01 0.00 0.00 2.40
890 2399 3.527253 TCTTTGGGATTCCTGGCATTCTA 59.473 43.478 2.01 0.00 0.00 2.10
891 2400 3.297134 TTGGGATTCCTGGCATTCTAC 57.703 47.619 2.01 0.00 0.00 2.59
892 2401 1.140852 TGGGATTCCTGGCATTCTACG 59.859 52.381 2.01 0.00 0.00 3.51
893 2402 1.416401 GGGATTCCTGGCATTCTACGA 59.584 52.381 2.01 0.00 0.00 3.43
894 2403 2.484889 GGATTCCTGGCATTCTACGAC 58.515 52.381 0.00 0.00 0.00 4.34
895 2404 2.103263 GGATTCCTGGCATTCTACGACT 59.897 50.000 0.00 0.00 0.00 4.18
896 2405 2.961526 TTCCTGGCATTCTACGACTC 57.038 50.000 0.00 0.00 0.00 3.36
897 2406 2.145397 TCCTGGCATTCTACGACTCT 57.855 50.000 0.00 0.00 0.00 3.24
898 2407 2.457598 TCCTGGCATTCTACGACTCTT 58.542 47.619 0.00 0.00 0.00 2.85
899 2408 2.832129 TCCTGGCATTCTACGACTCTTT 59.168 45.455 0.00 0.00 0.00 2.52
900 2409 3.260884 TCCTGGCATTCTACGACTCTTTT 59.739 43.478 0.00 0.00 0.00 2.27
901 2410 3.619038 CCTGGCATTCTACGACTCTTTTC 59.381 47.826 0.00 0.00 0.00 2.29
902 2411 3.596214 TGGCATTCTACGACTCTTTTCC 58.404 45.455 0.00 0.00 0.00 3.13
903 2412 3.007506 TGGCATTCTACGACTCTTTTCCA 59.992 43.478 0.00 0.00 0.00 3.53
904 2413 3.619038 GGCATTCTACGACTCTTTTCCAG 59.381 47.826 0.00 0.00 0.00 3.86
905 2414 4.495422 GCATTCTACGACTCTTTTCCAGA 58.505 43.478 0.00 0.00 0.00 3.86
906 2415 4.327627 GCATTCTACGACTCTTTTCCAGAC 59.672 45.833 0.00 0.00 0.00 3.51
907 2416 5.715070 CATTCTACGACTCTTTTCCAGACT 58.285 41.667 0.00 0.00 0.00 3.24
908 2417 6.625300 GCATTCTACGACTCTTTTCCAGACTA 60.625 42.308 0.00 0.00 0.00 2.59
909 2418 6.889301 TTCTACGACTCTTTTCCAGACTAA 57.111 37.500 0.00 0.00 0.00 2.24
910 2419 7.463961 TTCTACGACTCTTTTCCAGACTAAT 57.536 36.000 0.00 0.00 0.00 1.73
911 2420 7.463961 TCTACGACTCTTTTCCAGACTAATT 57.536 36.000 0.00 0.00 0.00 1.40
912 2421 8.571461 TCTACGACTCTTTTCCAGACTAATTA 57.429 34.615 0.00 0.00 0.00 1.40
913 2422 8.675504 TCTACGACTCTTTTCCAGACTAATTAG 58.324 37.037 11.05 11.05 0.00 1.73
914 2423 6.631962 ACGACTCTTTTCCAGACTAATTAGG 58.368 40.000 16.73 0.00 0.00 2.69
915 2424 6.436532 ACGACTCTTTTCCAGACTAATTAGGA 59.563 38.462 16.73 2.39 0.00 2.94
916 2425 7.039223 ACGACTCTTTTCCAGACTAATTAGGAA 60.039 37.037 16.73 8.40 38.31 3.36
917 2426 7.982354 CGACTCTTTTCCAGACTAATTAGGAAT 59.018 37.037 16.73 0.00 39.67 3.01
918 2427 9.674068 GACTCTTTTCCAGACTAATTAGGAATT 57.326 33.333 16.73 0.00 39.67 2.17
919 2428 9.674068 ACTCTTTTCCAGACTAATTAGGAATTC 57.326 33.333 16.73 5.22 39.67 2.17
920 2429 9.898152 CTCTTTTCCAGACTAATTAGGAATTCT 57.102 33.333 16.73 7.38 39.67 2.40
931 2440 9.807921 ACTAATTAGGAATTCTTTTCTTGGTCA 57.192 29.630 16.73 0.00 32.38 4.02
934 2443 9.933723 AATTAGGAATTCTTTTCTTGGTCATTG 57.066 29.630 5.23 0.00 0.00 2.82
935 2444 8.704849 TTAGGAATTCTTTTCTTGGTCATTGA 57.295 30.769 5.23 0.00 0.00 2.57
936 2445 7.224522 AGGAATTCTTTTCTTGGTCATTGAG 57.775 36.000 5.23 0.00 0.00 3.02
937 2446 7.006509 AGGAATTCTTTTCTTGGTCATTGAGA 58.993 34.615 5.23 0.00 0.00 3.27
938 2447 7.673082 AGGAATTCTTTTCTTGGTCATTGAGAT 59.327 33.333 5.23 0.00 0.00 2.75
939 2448 8.309656 GGAATTCTTTTCTTGGTCATTGAGATT 58.690 33.333 5.23 0.00 0.00 2.40
940 2449 9.351570 GAATTCTTTTCTTGGTCATTGAGATTC 57.648 33.333 0.00 0.00 0.00 2.52
941 2450 6.486253 TCTTTTCTTGGTCATTGAGATTCG 57.514 37.500 0.00 0.00 0.00 3.34
942 2451 5.997746 TCTTTTCTTGGTCATTGAGATTCGT 59.002 36.000 0.00 0.00 0.00 3.85
943 2452 5.611796 TTTCTTGGTCATTGAGATTCGTG 57.388 39.130 0.00 0.00 0.00 4.35
944 2453 3.599343 TCTTGGTCATTGAGATTCGTGG 58.401 45.455 0.00 0.00 0.00 4.94
945 2454 3.260632 TCTTGGTCATTGAGATTCGTGGA 59.739 43.478 0.00 0.00 0.00 4.02
946 2455 3.912496 TGGTCATTGAGATTCGTGGAT 57.088 42.857 0.00 0.00 0.00 3.41
947 2456 5.128663 TCTTGGTCATTGAGATTCGTGGATA 59.871 40.000 0.00 0.00 0.00 2.59
948 2457 5.351948 TGGTCATTGAGATTCGTGGATAA 57.648 39.130 0.00 0.00 0.00 1.75
949 2458 5.359756 TGGTCATTGAGATTCGTGGATAAG 58.640 41.667 0.00 0.00 0.00 1.73
950 2459 5.104941 TGGTCATTGAGATTCGTGGATAAGT 60.105 40.000 0.00 0.00 0.00 2.24
951 2460 5.817816 GGTCATTGAGATTCGTGGATAAGTT 59.182 40.000 0.00 0.00 0.00 2.66
952 2461 6.984474 GGTCATTGAGATTCGTGGATAAGTTA 59.016 38.462 0.00 0.00 0.00 2.24
953 2462 7.169982 GGTCATTGAGATTCGTGGATAAGTTAG 59.830 40.741 0.00 0.00 0.00 2.34
954 2463 7.921214 GTCATTGAGATTCGTGGATAAGTTAGA 59.079 37.037 0.00 0.00 0.00 2.10
955 2464 8.138074 TCATTGAGATTCGTGGATAAGTTAGAG 58.862 37.037 0.00 0.00 0.00 2.43
956 2465 7.406031 TTGAGATTCGTGGATAAGTTAGAGT 57.594 36.000 0.00 0.00 0.00 3.24
957 2466 8.515695 TTGAGATTCGTGGATAAGTTAGAGTA 57.484 34.615 0.00 0.00 0.00 2.59
958 2467 7.928103 TGAGATTCGTGGATAAGTTAGAGTAC 58.072 38.462 0.00 0.00 0.00 2.73
959 2468 7.774157 TGAGATTCGTGGATAAGTTAGAGTACT 59.226 37.037 0.00 0.00 0.00 2.73
960 2469 9.270640 GAGATTCGTGGATAAGTTAGAGTACTA 57.729 37.037 0.00 0.00 0.00 1.82
961 2470 9.796180 AGATTCGTGGATAAGTTAGAGTACTAT 57.204 33.333 0.00 0.00 0.00 2.12
966 2475 9.970243 CGTGGATAAGTTAGAGTACTATTATCG 57.030 37.037 0.00 0.00 34.61 2.92
998 2507 6.902771 TTTTTATCCCCTCGAACAAATCAA 57.097 33.333 0.00 0.00 0.00 2.57
999 2508 6.902771 TTTTATCCCCTCGAACAAATCAAA 57.097 33.333 0.00 0.00 0.00 2.69
1000 2509 6.902771 TTTATCCCCTCGAACAAATCAAAA 57.097 33.333 0.00 0.00 0.00 2.44
1001 2510 7.475137 TTTATCCCCTCGAACAAATCAAAAT 57.525 32.000 0.00 0.00 0.00 1.82
1002 2511 4.782019 TCCCCTCGAACAAATCAAAATG 57.218 40.909 0.00 0.00 0.00 2.32
1003 2512 4.402829 TCCCCTCGAACAAATCAAAATGA 58.597 39.130 0.00 0.00 0.00 2.57
1004 2513 5.016173 TCCCCTCGAACAAATCAAAATGAT 58.984 37.500 0.00 0.00 39.09 2.45
1006 2515 5.577945 CCCCTCGAACAAATCAAAATGATTG 59.422 40.000 6.37 4.33 45.57 2.67
1007 2516 6.389091 CCCTCGAACAAATCAAAATGATTGA 58.611 36.000 6.37 0.00 45.57 2.57
1008 2517 6.867816 CCCTCGAACAAATCAAAATGATTGAA 59.132 34.615 6.37 0.00 45.57 2.69
1009 2518 7.062605 CCCTCGAACAAATCAAAATGATTGAAG 59.937 37.037 6.37 3.46 45.57 3.02
1010 2519 7.596248 CCTCGAACAAATCAAAATGATTGAAGT 59.404 33.333 6.37 4.00 45.57 3.01
1011 2520 8.870160 TCGAACAAATCAAAATGATTGAAGTT 57.130 26.923 6.37 10.87 45.57 2.66
1012 2521 9.311916 TCGAACAAATCAAAATGATTGAAGTTT 57.688 25.926 6.37 0.00 45.57 2.66
1013 2522 9.919348 CGAACAAATCAAAATGATTGAAGTTTT 57.081 25.926 6.37 0.00 45.57 2.43
1027 2536 9.624697 TGATTGAAGTTTTTCTATTTGGAATCG 57.375 29.630 0.00 0.00 34.31 3.34
1028 2537 9.626045 GATTGAAGTTTTTCTATTTGGAATCGT 57.374 29.630 0.00 0.00 34.31 3.73
1029 2538 9.626045 ATTGAAGTTTTTCTATTTGGAATCGTC 57.374 29.630 0.00 0.00 34.31 4.20
1030 2539 8.391075 TGAAGTTTTTCTATTTGGAATCGTCT 57.609 30.769 0.00 0.00 34.31 4.18
1031 2540 8.846211 TGAAGTTTTTCTATTTGGAATCGTCTT 58.154 29.630 0.00 0.00 34.31 3.01
1034 2543 8.947115 AGTTTTTCTATTTGGAATCGTCTTAGG 58.053 33.333 0.00 0.00 0.00 2.69
1035 2544 6.920569 TTTCTATTTGGAATCGTCTTAGGC 57.079 37.500 0.00 0.00 0.00 3.93
1036 2545 4.957296 TCTATTTGGAATCGTCTTAGGCC 58.043 43.478 0.00 0.00 0.00 5.19
1037 2546 3.933861 ATTTGGAATCGTCTTAGGCCT 57.066 42.857 11.78 11.78 0.00 5.19
1038 2547 5.836898 TCTATTTGGAATCGTCTTAGGCCTA 59.163 40.000 8.91 8.91 0.00 3.93
1039 2548 4.829872 TTTGGAATCGTCTTAGGCCTAA 57.170 40.909 23.79 23.79 0.00 2.69
1040 2549 5.367945 TTTGGAATCGTCTTAGGCCTAAT 57.632 39.130 25.37 9.75 0.00 1.73
1041 2550 5.367945 TTGGAATCGTCTTAGGCCTAATT 57.632 39.130 25.37 16.06 0.00 1.40
1042 2551 4.957296 TGGAATCGTCTTAGGCCTAATTC 58.043 43.478 25.37 22.52 0.00 2.17
1043 2552 4.202326 TGGAATCGTCTTAGGCCTAATTCC 60.202 45.833 31.20 31.20 33.26 3.01
1044 2553 4.040584 GGAATCGTCTTAGGCCTAATTCCT 59.959 45.833 30.87 15.56 37.72 3.36
1045 2554 5.245526 GGAATCGTCTTAGGCCTAATTCCTA 59.754 44.000 30.87 17.23 35.21 2.94
1046 2555 6.070710 GGAATCGTCTTAGGCCTAATTCCTAT 60.071 42.308 30.87 18.30 36.20 2.57
1047 2556 6.936968 ATCGTCTTAGGCCTAATTCCTATT 57.063 37.500 25.37 5.35 36.20 1.73
1048 2557 8.431910 AATCGTCTTAGGCCTAATTCCTATTA 57.568 34.615 25.37 6.80 36.20 0.98
1049 2558 7.224522 TCGTCTTAGGCCTAATTCCTATTAC 57.775 40.000 25.37 11.83 36.20 1.89
1050 2559 7.008941 TCGTCTTAGGCCTAATTCCTATTACT 58.991 38.462 25.37 0.00 36.20 2.24
1051 2560 7.508296 TCGTCTTAGGCCTAATTCCTATTACTT 59.492 37.037 25.37 0.00 36.20 2.24
1052 2561 8.148999 CGTCTTAGGCCTAATTCCTATTACTTT 58.851 37.037 25.37 0.00 36.20 2.66
1055 2564 9.438228 CTTAGGCCTAATTCCTATTACTTTAGC 57.562 37.037 25.37 0.00 36.20 3.09
1056 2565 6.465084 AGGCCTAATTCCTATTACTTTAGCG 58.535 40.000 1.29 0.00 30.79 4.26
1057 2566 5.642491 GGCCTAATTCCTATTACTTTAGCGG 59.358 44.000 0.00 0.00 0.00 5.52
1058 2567 5.642491 GCCTAATTCCTATTACTTTAGCGGG 59.358 44.000 0.00 0.00 0.00 6.13
1059 2568 6.519551 GCCTAATTCCTATTACTTTAGCGGGA 60.520 42.308 0.00 0.00 0.00 5.14
1060 2569 7.621796 CCTAATTCCTATTACTTTAGCGGGAT 58.378 38.462 0.00 0.00 0.00 3.85
1061 2570 8.101419 CCTAATTCCTATTACTTTAGCGGGATT 58.899 37.037 0.00 0.00 0.00 3.01
1064 2573 9.668497 AATTCCTATTACTTTAGCGGGATTATC 57.332 33.333 0.00 0.00 0.00 1.75
1065 2574 7.179076 TCCTATTACTTTAGCGGGATTATCC 57.821 40.000 1.91 1.91 35.23 2.59
1073 2582 2.900528 CGGGATTATCCGTGACTGC 58.099 57.895 5.03 0.00 44.60 4.40
1074 2583 0.104120 CGGGATTATCCGTGACTGCA 59.896 55.000 5.03 0.00 44.60 4.41
1075 2584 1.270305 CGGGATTATCCGTGACTGCAT 60.270 52.381 5.03 0.00 44.60 3.96
1076 2585 2.029380 CGGGATTATCCGTGACTGCATA 60.029 50.000 5.03 0.00 44.60 3.14
1077 2586 3.368427 CGGGATTATCCGTGACTGCATAT 60.368 47.826 5.03 0.00 44.60 1.78
1078 2587 4.579869 GGGATTATCCGTGACTGCATATT 58.420 43.478 5.03 0.00 37.43 1.28
1079 2588 5.003804 GGGATTATCCGTGACTGCATATTT 58.996 41.667 5.03 0.00 37.43 1.40
1080 2589 5.106555 GGGATTATCCGTGACTGCATATTTG 60.107 44.000 5.03 0.00 37.43 2.32
1081 2590 8.485613 GGGATTATCCGTGACTGCATATTTGC 62.486 46.154 5.03 0.61 42.89 3.68
1095 2604 2.607631 ATTTGCAATACAGGCATGGC 57.392 45.000 12.14 12.14 41.58 4.40
1096 2605 0.173029 TTTGCAATACAGGCATGGCG 59.827 50.000 14.30 11.27 41.58 5.69
1097 2606 0.679321 TTGCAATACAGGCATGGCGA 60.679 50.000 14.30 3.74 41.58 5.54
1098 2607 0.466007 TGCAATACAGGCATGGCGAT 60.466 50.000 14.30 8.56 36.11 4.58
1099 2608 0.239347 GCAATACAGGCATGGCGATC 59.761 55.000 14.30 0.00 0.00 3.69
1100 2609 1.596603 CAATACAGGCATGGCGATCA 58.403 50.000 14.30 0.92 0.00 2.92
1101 2610 1.534163 CAATACAGGCATGGCGATCAG 59.466 52.381 14.30 5.49 0.00 2.90
1102 2611 0.761187 ATACAGGCATGGCGATCAGT 59.239 50.000 14.30 10.88 0.00 3.41
1103 2612 0.541392 TACAGGCATGGCGATCAGTT 59.459 50.000 14.30 0.00 0.00 3.16
1104 2613 1.028330 ACAGGCATGGCGATCAGTTG 61.028 55.000 14.30 7.23 0.00 3.16
1105 2614 1.452651 AGGCATGGCGATCAGTTGG 60.453 57.895 14.30 0.00 0.00 3.77
1106 2615 1.451927 GGCATGGCGATCAGTTGGA 60.452 57.895 2.41 0.00 0.00 3.53
1107 2616 0.820891 GGCATGGCGATCAGTTGGAT 60.821 55.000 2.41 0.00 39.53 3.41
1120 2629 6.998968 ATCAGTTGGATCTTTGATTGAGTC 57.001 37.500 0.00 0.00 0.00 3.36
1121 2630 5.868454 TCAGTTGGATCTTTGATTGAGTCA 58.132 37.500 0.00 0.00 34.25 3.41
1122 2631 6.479006 TCAGTTGGATCTTTGATTGAGTCAT 58.521 36.000 0.00 0.00 36.54 3.06
1123 2632 6.944290 TCAGTTGGATCTTTGATTGAGTCATT 59.056 34.615 0.00 0.00 36.54 2.57
1124 2633 7.449395 TCAGTTGGATCTTTGATTGAGTCATTT 59.551 33.333 0.00 0.00 36.54 2.32
1125 2634 8.086522 CAGTTGGATCTTTGATTGAGTCATTTT 58.913 33.333 0.00 0.00 36.54 1.82
1126 2635 8.645110 AGTTGGATCTTTGATTGAGTCATTTTT 58.355 29.630 0.00 0.00 36.54 1.94
1146 2655 4.569719 TTTTATTGACCTCCTCCAGACC 57.430 45.455 0.00 0.00 0.00 3.85
1147 2656 2.940514 TATTGACCTCCTCCAGACCA 57.059 50.000 0.00 0.00 0.00 4.02
1148 2657 1.577736 ATTGACCTCCTCCAGACCAG 58.422 55.000 0.00 0.00 0.00 4.00
1149 2658 0.487325 TTGACCTCCTCCAGACCAGA 59.513 55.000 0.00 0.00 0.00 3.86
1150 2659 0.040351 TGACCTCCTCCAGACCAGAG 59.960 60.000 0.00 0.00 0.00 3.35
1151 2660 0.333312 GACCTCCTCCAGACCAGAGA 59.667 60.000 0.00 0.00 32.86 3.10
1152 2661 0.334676 ACCTCCTCCAGACCAGAGAG 59.665 60.000 0.00 0.00 32.86 3.20
1156 2665 3.205815 CTCCAGACCAGAGAGGAGG 57.794 63.158 0.00 0.00 43.07 4.30
1157 2666 0.334676 CTCCAGACCAGAGAGGAGGT 59.665 60.000 0.00 0.00 43.07 3.85
1164 2673 3.710209 ACCAGAGAGGAGGTCAAATTG 57.290 47.619 0.00 0.00 41.22 2.32
1165 2674 3.251484 ACCAGAGAGGAGGTCAAATTGA 58.749 45.455 0.00 0.00 41.22 2.57
1166 2675 3.652869 ACCAGAGAGGAGGTCAAATTGAA 59.347 43.478 0.00 0.00 41.22 2.69
1167 2676 4.104738 ACCAGAGAGGAGGTCAAATTGAAA 59.895 41.667 0.00 0.00 41.22 2.69
1168 2677 5.222213 ACCAGAGAGGAGGTCAAATTGAAAT 60.222 40.000 0.00 0.00 41.22 2.17
1169 2678 5.713861 CCAGAGAGGAGGTCAAATTGAAATT 59.286 40.000 0.00 0.00 41.22 1.82
1170 2679 6.349944 CCAGAGAGGAGGTCAAATTGAAATTG 60.350 42.308 0.00 0.00 41.22 2.32
1171 2680 5.713861 AGAGAGGAGGTCAAATTGAAATTGG 59.286 40.000 0.00 0.00 0.00 3.16
1172 2681 5.644188 AGAGGAGGTCAAATTGAAATTGGA 58.356 37.500 0.00 0.00 0.00 3.53
1173 2682 5.713861 AGAGGAGGTCAAATTGAAATTGGAG 59.286 40.000 0.00 0.00 29.25 3.86
1174 2683 5.397360 AGGAGGTCAAATTGAAATTGGAGT 58.603 37.500 0.00 0.00 29.25 3.85
1175 2684 5.840693 AGGAGGTCAAATTGAAATTGGAGTT 59.159 36.000 0.00 0.00 29.25 3.01
1176 2685 7.010160 AGGAGGTCAAATTGAAATTGGAGTTA 58.990 34.615 0.00 0.00 29.25 2.24
1177 2686 7.039714 AGGAGGTCAAATTGAAATTGGAGTTAC 60.040 37.037 0.00 0.00 29.25 2.50
1178 2687 7.255801 GGAGGTCAAATTGAAATTGGAGTTACA 60.256 37.037 0.00 0.00 29.25 2.41
1179 2688 8.017418 AGGTCAAATTGAAATTGGAGTTACAA 57.983 30.769 0.00 0.00 29.25 2.41
1180 2689 8.650490 AGGTCAAATTGAAATTGGAGTTACAAT 58.350 29.630 0.00 0.00 42.56 2.71
1212 2721 9.872757 TTTGTTAAGTTATTTTACTCTGCTTCG 57.127 29.630 0.00 0.00 0.00 3.79
1213 2722 8.821147 TGTTAAGTTATTTTACTCTGCTTCGA 57.179 30.769 0.00 0.00 0.00 3.71
1214 2723 8.706035 TGTTAAGTTATTTTACTCTGCTTCGAC 58.294 33.333 0.00 0.00 0.00 4.20
1215 2724 8.706035 GTTAAGTTATTTTACTCTGCTTCGACA 58.294 33.333 0.00 0.00 0.00 4.35
1216 2725 7.907214 AAGTTATTTTACTCTGCTTCGACAT 57.093 32.000 0.00 0.00 0.00 3.06
1217 2726 8.997621 AAGTTATTTTACTCTGCTTCGACATA 57.002 30.769 0.00 0.00 0.00 2.29
1218 2727 8.997621 AGTTATTTTACTCTGCTTCGACATAA 57.002 30.769 0.00 0.00 0.00 1.90
1219 2728 9.088512 AGTTATTTTACTCTGCTTCGACATAAG 57.911 33.333 0.00 0.00 0.00 1.73
1220 2729 9.084164 GTTATTTTACTCTGCTTCGACATAAGA 57.916 33.333 0.00 0.00 0.00 2.10
1221 2730 9.817809 TTATTTTACTCTGCTTCGACATAAGAT 57.182 29.630 0.00 0.00 0.00 2.40
1223 2732 8.858003 TTTTACTCTGCTTCGACATAAGATAG 57.142 34.615 0.00 0.00 0.00 2.08
1224 2733 7.803279 TTACTCTGCTTCGACATAAGATAGA 57.197 36.000 0.00 0.00 0.00 1.98
1225 2734 6.892658 ACTCTGCTTCGACATAAGATAGAT 57.107 37.500 0.00 0.00 0.00 1.98
1226 2735 6.676950 ACTCTGCTTCGACATAAGATAGATG 58.323 40.000 0.00 0.00 0.00 2.90
1227 2736 6.018589 TCTGCTTCGACATAAGATAGATGG 57.981 41.667 0.00 0.00 0.00 3.51
1228 2737 5.770162 TCTGCTTCGACATAAGATAGATGGA 59.230 40.000 0.00 0.00 0.00 3.41
1229 2738 6.265422 TCTGCTTCGACATAAGATAGATGGAA 59.735 38.462 0.00 0.00 0.00 3.53
1230 2739 6.997655 TGCTTCGACATAAGATAGATGGAAT 58.002 36.000 0.00 0.00 0.00 3.01
1231 2740 7.093354 TGCTTCGACATAAGATAGATGGAATC 58.907 38.462 0.00 0.00 46.04 2.52
1243 2752 2.748605 GATGGAATCACGCTCTGTAGG 58.251 52.381 0.00 0.00 44.70 3.18
1244 2753 1.847328 TGGAATCACGCTCTGTAGGA 58.153 50.000 0.00 0.00 0.00 2.94
1245 2754 2.388735 TGGAATCACGCTCTGTAGGAT 58.611 47.619 0.00 0.00 0.00 3.24
1246 2755 2.766263 TGGAATCACGCTCTGTAGGATT 59.234 45.455 0.00 0.00 0.00 3.01
1247 2756 3.197766 TGGAATCACGCTCTGTAGGATTT 59.802 43.478 0.00 0.00 0.00 2.17
1248 2757 3.557595 GGAATCACGCTCTGTAGGATTTG 59.442 47.826 0.00 0.00 0.00 2.32
1249 2758 4.433615 GAATCACGCTCTGTAGGATTTGA 58.566 43.478 0.00 0.00 0.00 2.69
1250 2759 3.953712 TCACGCTCTGTAGGATTTGAA 57.046 42.857 0.00 0.00 0.00 2.69
1251 2760 3.585862 TCACGCTCTGTAGGATTTGAAC 58.414 45.455 0.00 0.00 0.00 3.18
1252 2761 2.673368 CACGCTCTGTAGGATTTGAACC 59.327 50.000 0.00 0.00 0.00 3.62
1253 2762 2.567615 ACGCTCTGTAGGATTTGAACCT 59.432 45.455 0.00 0.00 41.05 3.50
1254 2763 2.932614 CGCTCTGTAGGATTTGAACCTG 59.067 50.000 0.00 0.00 38.31 4.00
1255 2764 2.680339 GCTCTGTAGGATTTGAACCTGC 59.320 50.000 0.00 0.00 39.85 4.85
1256 2765 3.869912 GCTCTGTAGGATTTGAACCTGCA 60.870 47.826 0.00 0.00 45.05 4.41
1257 2766 4.326826 CTCTGTAGGATTTGAACCTGCAA 58.673 43.478 0.00 0.00 46.07 4.08
1258 2767 4.724399 TCTGTAGGATTTGAACCTGCAAA 58.276 39.130 0.00 0.00 46.07 3.68
1259 2768 5.136828 TCTGTAGGATTTGAACCTGCAAAA 58.863 37.500 0.00 0.00 46.07 2.44
1260 2769 5.774690 TCTGTAGGATTTGAACCTGCAAAAT 59.225 36.000 0.00 0.00 46.07 1.82
1261 2770 6.024552 TGTAGGATTTGAACCTGCAAAATC 57.975 37.500 10.91 10.91 44.49 2.17
1262 2771 4.178545 AGGATTTGAACCTGCAAAATCG 57.821 40.909 12.40 0.00 40.72 3.34
1263 2772 3.056607 AGGATTTGAACCTGCAAAATCGG 60.057 43.478 12.40 1.64 40.72 4.18
1264 2773 2.810439 TTTGAACCTGCAAAATCGGG 57.190 45.000 0.00 0.00 35.03 5.14
1269 2778 1.834188 ACCTGCAAAATCGGGTTAGG 58.166 50.000 0.00 0.00 42.91 2.69
1411 2923 7.730084 TGGAGAATGTAGTCAGAAATCCATAG 58.270 38.462 0.00 0.00 29.63 2.23
1750 3263 7.931948 CCACTACGAAGAAATTATGGGAGTTAT 59.068 37.037 0.00 0.00 0.00 1.89
1763 3276 5.505181 TGGGAGTTATGAAAGAAGCTTCT 57.495 39.130 23.49 23.49 39.74 2.85
1779 3292 8.485976 AGAAGCTTCTTACTCATATTGTTCAC 57.514 34.615 23.49 0.00 32.55 3.18
1811 3324 1.483004 GGGAGTTGAACTCTAGGAGGC 59.517 57.143 23.06 6.18 44.46 4.70
1856 3369 1.002990 TCAGTGGTAGAGCGGTCGA 60.003 57.895 9.28 0.00 0.00 4.20
1881 3394 4.826733 TGTTAACTGACTGGTCGTAGGTTA 59.173 41.667 7.22 0.00 0.00 2.85
1989 3502 2.661593 ACCCTTAGGAGTAGGTAACCCA 59.338 50.000 0.00 0.00 36.73 4.51
1992 3505 4.725304 CCCTTAGGAGTAGGTAACCCATTT 59.275 45.833 0.00 0.00 33.47 2.32
2008 3521 4.463891 ACCCATTTGCTATCCTTGTTTCTG 59.536 41.667 0.00 0.00 0.00 3.02
2018 3531 7.665559 TGCTATCCTTGTTTCTGTTTCTATTGT 59.334 33.333 0.00 0.00 0.00 2.71
2058 3577 4.216902 TCAGTTCTACGATTCCACTTCGAA 59.783 41.667 0.00 0.00 39.81 3.71
2059 3578 5.103000 CAGTTCTACGATTCCACTTCGAAT 58.897 41.667 0.00 0.00 39.81 3.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 4.705519 CAAAAGCTGCCGCCACCG 62.706 66.667 0.00 0.00 36.60 4.94
33 34 3.294493 GGACAAAAGCTGCCGCCA 61.294 61.111 0.00 0.00 36.60 5.69
104 105 0.611062 TACCATATCGCGGAGGAGGG 60.611 60.000 6.13 2.76 0.00 4.30
128 129 4.042174 AGGATTGGGATTAGGGTTACGAA 58.958 43.478 0.00 0.00 0.00 3.85
168 169 7.014038 GGTCATTGATTCTGCCTAAATGAGAAT 59.986 37.037 0.00 0.00 37.79 2.40
173 174 4.576053 TCGGTCATTGATTCTGCCTAAATG 59.424 41.667 0.00 0.00 0.00 2.32
174 175 4.780815 TCGGTCATTGATTCTGCCTAAAT 58.219 39.130 0.00 0.00 0.00 1.40
261 268 2.017049 CTTCGATTTCCCAAATCCGCT 58.983 47.619 3.87 0.00 43.39 5.52
295 302 4.143543 TCCATCAAACACAGCATCTTTGA 58.856 39.130 0.00 0.00 38.07 2.69
304 311 5.934043 TCTACTTCACATCCATCAAACACAG 59.066 40.000 0.00 0.00 0.00 3.66
396 1875 1.836999 ATCTGCTGCCGTTGGTACCA 61.837 55.000 11.60 11.60 0.00 3.25
425 1904 2.126307 CGCCTATCTCATCGCCGG 60.126 66.667 0.00 0.00 0.00 6.13
427 1906 2.433318 GCCGCCTATCTCATCGCC 60.433 66.667 0.00 0.00 0.00 5.54
430 1909 0.598562 TTCTCGCCGCCTATCTCATC 59.401 55.000 0.00 0.00 0.00 2.92
431 1910 1.040646 TTTCTCGCCGCCTATCTCAT 58.959 50.000 0.00 0.00 0.00 2.90
435 1914 0.880718 CCCTTTTCTCGCCGCCTATC 60.881 60.000 0.00 0.00 0.00 2.08
436 1915 1.146263 CCCTTTTCTCGCCGCCTAT 59.854 57.895 0.00 0.00 0.00 2.57
437 1916 2.582436 CCCTTTTCTCGCCGCCTA 59.418 61.111 0.00 0.00 0.00 3.93
440 1919 1.095807 ATTAGCCCTTTTCTCGCCGC 61.096 55.000 0.00 0.00 0.00 6.53
441 1920 0.657840 CATTAGCCCTTTTCTCGCCG 59.342 55.000 0.00 0.00 0.00 6.46
442 1921 0.382158 GCATTAGCCCTTTTCTCGCC 59.618 55.000 0.00 0.00 33.58 5.54
443 1922 3.926289 GCATTAGCCCTTTTCTCGC 57.074 52.632 0.00 0.00 33.58 5.03
455 1934 0.830648 TCTTCCACCTCCGGCATTAG 59.169 55.000 0.00 0.00 0.00 1.73
456 1935 0.830648 CTCTTCCACCTCCGGCATTA 59.169 55.000 0.00 0.00 0.00 1.90
457 1936 1.604378 CTCTTCCACCTCCGGCATT 59.396 57.895 0.00 0.00 0.00 3.56
464 1943 1.743252 CAAGCGCCTCTTCCACCTC 60.743 63.158 2.29 0.00 31.27 3.85
465 1944 2.348998 CAAGCGCCTCTTCCACCT 59.651 61.111 2.29 0.00 31.27 4.00
472 1951 4.400961 GACTGCCCAAGCGCCTCT 62.401 66.667 2.29 0.00 44.31 3.69
485 1964 4.052229 ACCGCGGGAAGACGACTG 62.052 66.667 31.76 0.00 35.47 3.51
486 1965 4.052229 CACCGCGGGAAGACGACT 62.052 66.667 31.76 0.57 35.47 4.18
490 1969 3.119096 GAAGCACCGCGGGAAGAC 61.119 66.667 31.76 13.92 0.00 3.01
508 2014 3.857854 CGTGTGCTCATCTGCCGC 61.858 66.667 0.00 0.00 0.00 6.53
510 2016 3.503363 GCCGTGTGCTCATCTGCC 61.503 66.667 0.00 0.00 36.87 4.85
542 2048 4.544689 CTCTCTCTGGCGCCGTCG 62.545 72.222 23.90 13.07 39.07 5.12
546 2052 3.535962 CTCCCTCTCTCTGGCGCC 61.536 72.222 22.73 22.73 0.00 6.53
548 2054 0.819259 CTCTCTCCCTCTCTCTGGCG 60.819 65.000 0.00 0.00 0.00 5.69
549 2055 1.109323 GCTCTCTCCCTCTCTCTGGC 61.109 65.000 0.00 0.00 0.00 4.85
550 2056 0.819259 CGCTCTCTCCCTCTCTCTGG 60.819 65.000 0.00 0.00 0.00 3.86
551 2057 0.180171 TCGCTCTCTCCCTCTCTCTG 59.820 60.000 0.00 0.00 0.00 3.35
552 2058 0.469917 CTCGCTCTCTCCCTCTCTCT 59.530 60.000 0.00 0.00 0.00 3.10
554 2060 1.152963 GCTCGCTCTCTCCCTCTCT 60.153 63.158 0.00 0.00 0.00 3.10
555 2061 1.447317 CTGCTCGCTCTCTCCCTCTC 61.447 65.000 0.00 0.00 0.00 3.20
557 2063 1.034838 TTCTGCTCGCTCTCTCCCTC 61.035 60.000 0.00 0.00 0.00 4.30
559 2065 1.034838 TCTTCTGCTCGCTCTCTCCC 61.035 60.000 0.00 0.00 0.00 4.30
561 2067 0.100503 GGTCTTCTGCTCGCTCTCTC 59.899 60.000 0.00 0.00 0.00 3.20
566 2072 0.394565 ACTTTGGTCTTCTGCTCGCT 59.605 50.000 0.00 0.00 0.00 4.93
568 2075 2.989840 CAGTACTTTGGTCTTCTGCTCG 59.010 50.000 0.00 0.00 0.00 5.03
570 2077 2.039084 CCCAGTACTTTGGTCTTCTGCT 59.961 50.000 0.00 0.00 36.45 4.24
572 2079 2.637872 TCCCCAGTACTTTGGTCTTCTG 59.362 50.000 0.00 0.00 36.45 3.02
581 2088 4.019231 GTCTTCCTCATTCCCCAGTACTTT 60.019 45.833 0.00 0.00 0.00 2.66
583 2090 3.108376 GTCTTCCTCATTCCCCAGTACT 58.892 50.000 0.00 0.00 0.00 2.73
585 2092 3.199442 TGTCTTCCTCATTCCCCAGTA 57.801 47.619 0.00 0.00 0.00 2.74
588 2095 4.540099 AGTTTATGTCTTCCTCATTCCCCA 59.460 41.667 0.00 0.00 0.00 4.96
597 2104 3.267031 CCCCTTGGAGTTTATGTCTTCCT 59.733 47.826 0.00 0.00 0.00 3.36
599 2106 3.017442 GCCCCTTGGAGTTTATGTCTTC 58.983 50.000 0.00 0.00 0.00 2.87
601 2108 1.992557 TGCCCCTTGGAGTTTATGTCT 59.007 47.619 0.00 0.00 0.00 3.41
606 2113 2.524306 CAATGTGCCCCTTGGAGTTTA 58.476 47.619 0.00 0.00 0.00 2.01
608 2115 1.187567 GCAATGTGCCCCTTGGAGTT 61.188 55.000 0.00 0.00 37.42 3.01
609 2116 1.607467 GCAATGTGCCCCTTGGAGT 60.607 57.895 0.00 0.00 37.42 3.85
610 2117 0.901580 AAGCAATGTGCCCCTTGGAG 60.902 55.000 0.00 0.00 46.52 3.86
611 2118 0.407528 TAAGCAATGTGCCCCTTGGA 59.592 50.000 0.00 0.00 46.52 3.53
612 2119 1.265236 TTAAGCAATGTGCCCCTTGG 58.735 50.000 0.00 0.00 46.52 3.61
615 2122 3.055167 GGAATTTTAAGCAATGTGCCCCT 60.055 43.478 0.00 0.00 46.52 4.79
619 2126 4.143137 CGGTTGGAATTTTAAGCAATGTGC 60.143 41.667 0.00 0.00 45.46 4.57
622 2129 5.226396 TGACGGTTGGAATTTTAAGCAATG 58.774 37.500 0.00 0.00 0.00 2.82
628 2135 3.058777 GCGACTGACGGTTGGAATTTTAA 60.059 43.478 3.77 0.00 42.83 1.52
631 2138 0.872388 GCGACTGACGGTTGGAATTT 59.128 50.000 3.77 0.00 42.83 1.82
634 2141 2.355363 CGCGACTGACGGTTGGAA 60.355 61.111 0.00 0.00 42.83 3.53
635 2142 4.351938 CCGCGACTGACGGTTGGA 62.352 66.667 8.23 0.00 45.70 3.53
643 2150 1.515954 GGAGATTTCCCGCGACTGA 59.484 57.895 8.23 0.00 37.53 3.41
690 2199 4.368808 CGTGTGGCGCTTTGACCG 62.369 66.667 7.64 0.00 0.00 4.79
699 2208 4.662961 TGACCAGCTCGTGTGGCG 62.663 66.667 0.00 0.00 38.83 5.69
700 2209 2.740055 CTGACCAGCTCGTGTGGC 60.740 66.667 0.00 0.00 38.83 5.01
701 2210 1.373497 GTCTGACCAGCTCGTGTGG 60.373 63.158 0.00 0.00 41.30 4.17
702 2211 1.730902 CGTCTGACCAGCTCGTGTG 60.731 63.158 1.55 0.00 0.00 3.82
703 2212 2.645567 CGTCTGACCAGCTCGTGT 59.354 61.111 1.55 0.00 0.00 4.49
704 2213 2.126307 CCGTCTGACCAGCTCGTG 60.126 66.667 1.55 0.00 0.00 4.35
705 2214 3.374402 CCCGTCTGACCAGCTCGT 61.374 66.667 1.55 0.00 0.00 4.18
706 2215 1.949847 AATCCCGTCTGACCAGCTCG 61.950 60.000 1.55 0.00 0.00 5.03
707 2216 1.067821 CTAATCCCGTCTGACCAGCTC 59.932 57.143 1.55 0.00 0.00 4.09
708 2217 1.115467 CTAATCCCGTCTGACCAGCT 58.885 55.000 1.55 0.00 0.00 4.24
709 2218 0.105039 CCTAATCCCGTCTGACCAGC 59.895 60.000 1.55 0.00 0.00 4.85
710 2219 1.409427 GTCCTAATCCCGTCTGACCAG 59.591 57.143 1.55 0.00 0.00 4.00
711 2220 1.481871 GTCCTAATCCCGTCTGACCA 58.518 55.000 1.55 0.00 0.00 4.02
747 2256 6.319658 TGCATATCTGAGTCCCAAATCTTTTC 59.680 38.462 0.00 0.00 0.00 2.29
857 2366 7.256439 CCAGGAATCCCAAAGAAAGATTTTTCT 60.256 37.037 5.43 5.43 43.90 2.52
858 2367 6.875726 CCAGGAATCCCAAAGAAAGATTTTTC 59.124 38.462 0.00 0.46 37.97 2.29
859 2368 6.745190 GCCAGGAATCCCAAAGAAAGATTTTT 60.745 38.462 0.00 0.00 30.52 1.94
860 2369 5.280164 GCCAGGAATCCCAAAGAAAGATTTT 60.280 40.000 0.00 0.00 30.52 1.82
861 2370 4.223700 GCCAGGAATCCCAAAGAAAGATTT 59.776 41.667 0.00 0.00 30.52 2.17
862 2371 3.771479 GCCAGGAATCCCAAAGAAAGATT 59.229 43.478 0.00 0.00 33.01 2.40
863 2372 3.245730 TGCCAGGAATCCCAAAGAAAGAT 60.246 43.478 0.00 0.00 33.88 2.40
864 2373 2.109834 TGCCAGGAATCCCAAAGAAAGA 59.890 45.455 0.00 0.00 33.88 2.52
865 2374 2.528564 TGCCAGGAATCCCAAAGAAAG 58.471 47.619 0.00 0.00 33.88 2.62
866 2375 2.692709 TGCCAGGAATCCCAAAGAAA 57.307 45.000 0.00 0.00 33.88 2.52
867 2376 2.925966 ATGCCAGGAATCCCAAAGAA 57.074 45.000 0.00 0.00 33.88 2.52
868 2377 2.312741 AGAATGCCAGGAATCCCAAAGA 59.687 45.455 0.00 0.00 33.88 2.52
869 2378 2.743553 AGAATGCCAGGAATCCCAAAG 58.256 47.619 0.00 0.00 33.88 2.77
870 2379 2.925966 AGAATGCCAGGAATCCCAAA 57.074 45.000 0.00 0.00 33.88 3.28
871 2380 2.421388 CGTAGAATGCCAGGAATCCCAA 60.421 50.000 0.00 0.00 33.88 4.12
872 2381 1.140852 CGTAGAATGCCAGGAATCCCA 59.859 52.381 0.00 0.00 33.88 4.37
873 2382 1.416401 TCGTAGAATGCCAGGAATCCC 59.584 52.381 0.00 0.00 0.00 3.85
874 2383 2.103263 AGTCGTAGAATGCCAGGAATCC 59.897 50.000 0.00 0.00 39.69 3.01
875 2384 3.068873 AGAGTCGTAGAATGCCAGGAATC 59.931 47.826 0.00 0.00 39.69 2.52
876 2385 3.034635 AGAGTCGTAGAATGCCAGGAAT 58.965 45.455 0.00 0.00 39.69 3.01
877 2386 2.457598 AGAGTCGTAGAATGCCAGGAA 58.542 47.619 0.00 0.00 39.69 3.36
878 2387 2.145397 AGAGTCGTAGAATGCCAGGA 57.855 50.000 0.00 0.00 39.69 3.86
879 2388 2.969628 AAGAGTCGTAGAATGCCAGG 57.030 50.000 0.00 0.00 39.69 4.45
880 2389 3.619038 GGAAAAGAGTCGTAGAATGCCAG 59.381 47.826 0.00 0.00 39.69 4.85
881 2390 3.007506 TGGAAAAGAGTCGTAGAATGCCA 59.992 43.478 0.00 0.00 39.69 4.92
882 2391 3.596214 TGGAAAAGAGTCGTAGAATGCC 58.404 45.455 0.00 0.00 39.69 4.40
883 2392 4.327627 GTCTGGAAAAGAGTCGTAGAATGC 59.672 45.833 0.00 0.00 39.69 3.56
884 2393 5.715070 AGTCTGGAAAAGAGTCGTAGAATG 58.285 41.667 0.00 0.00 39.69 2.67
885 2394 5.986501 AGTCTGGAAAAGAGTCGTAGAAT 57.013 39.130 0.00 0.00 39.69 2.40
886 2395 6.889301 TTAGTCTGGAAAAGAGTCGTAGAA 57.111 37.500 0.00 0.00 39.69 2.10
887 2396 7.463961 AATTAGTCTGGAAAAGAGTCGTAGA 57.536 36.000 0.00 0.00 39.43 2.59
888 2397 7.916450 CCTAATTAGTCTGGAAAAGAGTCGTAG 59.084 40.741 11.50 0.00 39.43 3.51
889 2398 7.613022 TCCTAATTAGTCTGGAAAAGAGTCGTA 59.387 37.037 11.50 0.00 39.43 3.43
890 2399 6.436532 TCCTAATTAGTCTGGAAAAGAGTCGT 59.563 38.462 11.50 0.00 39.43 4.34
891 2400 6.864342 TCCTAATTAGTCTGGAAAAGAGTCG 58.136 40.000 11.50 0.00 39.43 4.18
892 2401 9.674068 AATTCCTAATTAGTCTGGAAAAGAGTC 57.326 33.333 11.50 0.00 41.22 3.36
893 2402 9.674068 GAATTCCTAATTAGTCTGGAAAAGAGT 57.326 33.333 11.50 0.00 41.22 3.24
894 2403 9.898152 AGAATTCCTAATTAGTCTGGAAAAGAG 57.102 33.333 11.50 0.00 41.22 2.85
905 2414 9.807921 TGACCAAGAAAAGAATTCCTAATTAGT 57.192 29.630 11.50 0.00 0.00 2.24
908 2417 9.933723 CAATGACCAAGAAAAGAATTCCTAATT 57.066 29.630 0.65 0.00 0.00 1.40
909 2418 9.312904 TCAATGACCAAGAAAAGAATTCCTAAT 57.687 29.630 0.65 0.00 0.00 1.73
910 2419 8.704849 TCAATGACCAAGAAAAGAATTCCTAA 57.295 30.769 0.65 0.00 0.00 2.69
911 2420 8.163408 TCTCAATGACCAAGAAAAGAATTCCTA 58.837 33.333 0.65 0.00 0.00 2.94
912 2421 7.006509 TCTCAATGACCAAGAAAAGAATTCCT 58.993 34.615 0.65 0.00 0.00 3.36
913 2422 7.219484 TCTCAATGACCAAGAAAAGAATTCC 57.781 36.000 0.65 0.00 0.00 3.01
914 2423 9.351570 GAATCTCAATGACCAAGAAAAGAATTC 57.648 33.333 0.00 0.00 0.00 2.17
915 2424 8.025445 CGAATCTCAATGACCAAGAAAAGAATT 58.975 33.333 0.00 0.00 0.00 2.17
916 2425 7.175641 ACGAATCTCAATGACCAAGAAAAGAAT 59.824 33.333 0.00 0.00 0.00 2.40
917 2426 6.486657 ACGAATCTCAATGACCAAGAAAAGAA 59.513 34.615 0.00 0.00 0.00 2.52
918 2427 5.997746 ACGAATCTCAATGACCAAGAAAAGA 59.002 36.000 0.00 0.00 0.00 2.52
919 2428 6.082338 CACGAATCTCAATGACCAAGAAAAG 58.918 40.000 0.00 0.00 0.00 2.27
920 2429 5.048782 CCACGAATCTCAATGACCAAGAAAA 60.049 40.000 0.00 0.00 0.00 2.29
921 2430 4.455533 CCACGAATCTCAATGACCAAGAAA 59.544 41.667 0.00 0.00 0.00 2.52
922 2431 4.002982 CCACGAATCTCAATGACCAAGAA 58.997 43.478 0.00 0.00 0.00 2.52
923 2432 3.260632 TCCACGAATCTCAATGACCAAGA 59.739 43.478 0.00 0.00 0.00 3.02
924 2433 3.599343 TCCACGAATCTCAATGACCAAG 58.401 45.455 0.00 0.00 0.00 3.61
925 2434 3.694043 TCCACGAATCTCAATGACCAA 57.306 42.857 0.00 0.00 0.00 3.67
926 2435 3.912496 ATCCACGAATCTCAATGACCA 57.088 42.857 0.00 0.00 0.00 4.02
927 2436 5.360591 ACTTATCCACGAATCTCAATGACC 58.639 41.667 0.00 0.00 0.00 4.02
928 2437 6.910536 AACTTATCCACGAATCTCAATGAC 57.089 37.500 0.00 0.00 0.00 3.06
929 2438 8.007405 TCTAACTTATCCACGAATCTCAATGA 57.993 34.615 0.00 0.00 0.00 2.57
930 2439 7.923344 ACTCTAACTTATCCACGAATCTCAATG 59.077 37.037 0.00 0.00 0.00 2.82
931 2440 8.012957 ACTCTAACTTATCCACGAATCTCAAT 57.987 34.615 0.00 0.00 0.00 2.57
932 2441 7.406031 ACTCTAACTTATCCACGAATCTCAA 57.594 36.000 0.00 0.00 0.00 3.02
933 2442 7.774157 AGTACTCTAACTTATCCACGAATCTCA 59.226 37.037 0.00 0.00 0.00 3.27
934 2443 8.156994 AGTACTCTAACTTATCCACGAATCTC 57.843 38.462 0.00 0.00 0.00 2.75
935 2444 9.796180 ATAGTACTCTAACTTATCCACGAATCT 57.204 33.333 0.00 0.00 0.00 2.40
940 2449 9.970243 CGATAATAGTACTCTAACTTATCCACG 57.030 37.037 0.00 0.00 31.32 4.94
975 2484 6.902771 TTGATTTGTTCGAGGGGATAAAAA 57.097 33.333 0.00 0.00 0.00 1.94
976 2485 6.902771 TTTGATTTGTTCGAGGGGATAAAA 57.097 33.333 0.00 0.00 0.00 1.52
977 2486 6.902771 TTTTGATTTGTTCGAGGGGATAAA 57.097 33.333 0.00 0.00 0.00 1.40
978 2487 6.661377 TCATTTTGATTTGTTCGAGGGGATAA 59.339 34.615 0.00 0.00 0.00 1.75
979 2488 6.184068 TCATTTTGATTTGTTCGAGGGGATA 58.816 36.000 0.00 0.00 0.00 2.59
980 2489 5.016173 TCATTTTGATTTGTTCGAGGGGAT 58.984 37.500 0.00 0.00 0.00 3.85
981 2490 4.402829 TCATTTTGATTTGTTCGAGGGGA 58.597 39.130 0.00 0.00 0.00 4.81
982 2491 4.782019 TCATTTTGATTTGTTCGAGGGG 57.218 40.909 0.00 0.00 0.00 4.79
983 2492 6.389091 TCAATCATTTTGATTTGTTCGAGGG 58.611 36.000 0.07 0.00 44.03 4.30
984 2493 7.596248 ACTTCAATCATTTTGATTTGTTCGAGG 59.404 33.333 0.07 0.00 44.03 4.63
985 2494 8.511465 ACTTCAATCATTTTGATTTGTTCGAG 57.489 30.769 0.07 0.00 44.03 4.04
986 2495 8.870160 AACTTCAATCATTTTGATTTGTTCGA 57.130 26.923 0.07 0.00 44.03 3.71
987 2496 9.919348 AAAACTTCAATCATTTTGATTTGTTCG 57.081 25.926 0.07 0.00 44.03 3.95
1001 2510 9.624697 CGATTCCAAATAGAAAAACTTCAATCA 57.375 29.630 0.00 0.00 0.00 2.57
1002 2511 9.626045 ACGATTCCAAATAGAAAAACTTCAATC 57.374 29.630 0.00 0.00 0.00 2.67
1003 2512 9.626045 GACGATTCCAAATAGAAAAACTTCAAT 57.374 29.630 0.00 0.00 0.00 2.57
1004 2513 8.846211 AGACGATTCCAAATAGAAAAACTTCAA 58.154 29.630 0.00 0.00 0.00 2.69
1005 2514 8.391075 AGACGATTCCAAATAGAAAAACTTCA 57.609 30.769 0.00 0.00 0.00 3.02
1008 2517 8.947115 CCTAAGACGATTCCAAATAGAAAAACT 58.053 33.333 0.00 0.00 0.00 2.66
1009 2518 7.696872 GCCTAAGACGATTCCAAATAGAAAAAC 59.303 37.037 0.00 0.00 0.00 2.43
1010 2519 7.148137 GGCCTAAGACGATTCCAAATAGAAAAA 60.148 37.037 0.00 0.00 0.00 1.94
1011 2520 6.317893 GGCCTAAGACGATTCCAAATAGAAAA 59.682 38.462 0.00 0.00 0.00 2.29
1012 2521 5.820947 GGCCTAAGACGATTCCAAATAGAAA 59.179 40.000 0.00 0.00 0.00 2.52
1013 2522 5.130477 AGGCCTAAGACGATTCCAAATAGAA 59.870 40.000 1.29 0.00 0.00 2.10
1014 2523 4.654262 AGGCCTAAGACGATTCCAAATAGA 59.346 41.667 1.29 0.00 0.00 1.98
1015 2524 4.962155 AGGCCTAAGACGATTCCAAATAG 58.038 43.478 1.29 0.00 0.00 1.73
1016 2525 6.488769 TTAGGCCTAAGACGATTCCAAATA 57.511 37.500 21.68 0.00 0.00 1.40
1017 2526 3.933861 AGGCCTAAGACGATTCCAAAT 57.066 42.857 1.29 0.00 0.00 2.32
1018 2527 4.829872 TTAGGCCTAAGACGATTCCAAA 57.170 40.909 21.68 0.00 0.00 3.28
1019 2528 5.365619 GAATTAGGCCTAAGACGATTCCAA 58.634 41.667 28.35 4.99 0.00 3.53
1020 2529 4.202326 GGAATTAGGCCTAAGACGATTCCA 60.202 45.833 32.08 11.60 33.05 3.53
1021 2530 4.040584 AGGAATTAGGCCTAAGACGATTCC 59.959 45.833 30.97 30.97 33.01 3.01
1022 2531 5.216614 AGGAATTAGGCCTAAGACGATTC 57.783 43.478 28.35 23.95 32.92 2.52
1023 2532 6.936968 ATAGGAATTAGGCCTAAGACGATT 57.063 37.500 28.35 18.04 41.10 3.34
1024 2533 6.936968 AATAGGAATTAGGCCTAAGACGAT 57.063 37.500 28.35 18.56 41.10 3.73
1025 2534 7.008941 AGTAATAGGAATTAGGCCTAAGACGA 58.991 38.462 28.35 17.33 41.10 4.20
1026 2535 7.229581 AGTAATAGGAATTAGGCCTAAGACG 57.770 40.000 28.35 0.00 41.10 4.18
1029 2538 9.438228 GCTAAAGTAATAGGAATTAGGCCTAAG 57.562 37.037 28.35 11.31 41.10 2.18
1030 2539 8.092687 CGCTAAAGTAATAGGAATTAGGCCTAA 58.907 37.037 27.11 27.11 41.10 2.69
1031 2540 7.310237 CCGCTAAAGTAATAGGAATTAGGCCTA 60.310 40.741 8.91 8.91 41.91 3.93
1032 2541 6.465084 CGCTAAAGTAATAGGAATTAGGCCT 58.535 40.000 11.78 11.78 39.56 5.19
1033 2542 5.642491 CCGCTAAAGTAATAGGAATTAGGCC 59.358 44.000 0.00 0.00 0.00 5.19
1034 2543 5.642491 CCCGCTAAAGTAATAGGAATTAGGC 59.358 44.000 0.00 0.00 0.00 3.93
1035 2544 7.001099 TCCCGCTAAAGTAATAGGAATTAGG 57.999 40.000 0.00 0.00 0.00 2.69
1038 2547 9.668497 GATAATCCCGCTAAAGTAATAGGAATT 57.332 33.333 0.00 0.00 0.00 2.17
1039 2548 8.265764 GGATAATCCCGCTAAAGTAATAGGAAT 58.734 37.037 0.00 0.00 0.00 3.01
1040 2549 7.578189 CGGATAATCCCGCTAAAGTAATAGGAA 60.578 40.741 0.00 0.00 43.25 3.36
1041 2550 6.127535 CGGATAATCCCGCTAAAGTAATAGGA 60.128 42.308 0.00 0.00 43.25 2.94
1042 2551 6.040878 CGGATAATCCCGCTAAAGTAATAGG 58.959 44.000 0.00 0.00 43.25 2.57
1056 2565 2.550830 ATGCAGTCACGGATAATCCC 57.449 50.000 0.00 0.00 31.13 3.85
1057 2566 5.931532 CAAATATGCAGTCACGGATAATCC 58.068 41.667 0.00 0.00 0.00 3.01
1073 2582 3.991773 GCCATGCCTGTATTGCAAATATG 59.008 43.478 1.71 1.08 42.92 1.78
1074 2583 3.305539 CGCCATGCCTGTATTGCAAATAT 60.306 43.478 1.71 0.00 42.92 1.28
1075 2584 2.034432 CGCCATGCCTGTATTGCAAATA 59.966 45.455 1.71 0.00 42.92 1.40
1076 2585 1.202440 CGCCATGCCTGTATTGCAAAT 60.202 47.619 1.71 0.00 42.92 2.32
1077 2586 0.173029 CGCCATGCCTGTATTGCAAA 59.827 50.000 1.71 0.00 42.92 3.68
1078 2587 0.679321 TCGCCATGCCTGTATTGCAA 60.679 50.000 0.00 0.00 42.92 4.08
1079 2588 0.466007 ATCGCCATGCCTGTATTGCA 60.466 50.000 0.00 0.00 43.97 4.08
1080 2589 0.239347 GATCGCCATGCCTGTATTGC 59.761 55.000 0.00 0.00 0.00 3.56
1081 2590 1.534163 CTGATCGCCATGCCTGTATTG 59.466 52.381 0.00 0.00 0.00 1.90
1082 2591 1.141657 ACTGATCGCCATGCCTGTATT 59.858 47.619 0.00 0.00 0.00 1.89
1083 2592 0.761187 ACTGATCGCCATGCCTGTAT 59.239 50.000 0.00 0.00 0.00 2.29
1084 2593 0.541392 AACTGATCGCCATGCCTGTA 59.459 50.000 0.00 0.00 0.00 2.74
1085 2594 1.028330 CAACTGATCGCCATGCCTGT 61.028 55.000 0.00 0.00 0.00 4.00
1086 2595 1.721664 CCAACTGATCGCCATGCCTG 61.722 60.000 0.00 0.00 0.00 4.85
1087 2596 1.452651 CCAACTGATCGCCATGCCT 60.453 57.895 0.00 0.00 0.00 4.75
1088 2597 0.820891 ATCCAACTGATCGCCATGCC 60.821 55.000 0.00 0.00 0.00 4.40
1089 2598 0.590195 GATCCAACTGATCGCCATGC 59.410 55.000 0.00 0.00 40.53 4.06
1095 2604 8.532923 TGACTCAATCAAAGATCCAACTGATCG 61.533 40.741 0.00 0.00 43.84 3.69
1096 2605 6.596888 TGACTCAATCAAAGATCCAACTGATC 59.403 38.462 0.00 0.00 41.54 2.92
1097 2606 6.479006 TGACTCAATCAAAGATCCAACTGAT 58.521 36.000 0.00 0.00 33.02 2.90
1098 2607 5.868454 TGACTCAATCAAAGATCCAACTGA 58.132 37.500 0.00 0.00 33.02 3.41
1099 2608 6.754702 ATGACTCAATCAAAGATCCAACTG 57.245 37.500 0.00 0.00 41.93 3.16
1100 2609 7.771927 AAATGACTCAATCAAAGATCCAACT 57.228 32.000 0.00 0.00 41.93 3.16
1101 2610 8.822652 AAAAATGACTCAATCAAAGATCCAAC 57.177 30.769 0.00 0.00 41.93 3.77
1124 2633 4.352595 TGGTCTGGAGGAGGTCAATAAAAA 59.647 41.667 0.00 0.00 0.00 1.94
1125 2634 3.913799 TGGTCTGGAGGAGGTCAATAAAA 59.086 43.478 0.00 0.00 0.00 1.52
1126 2635 3.519510 CTGGTCTGGAGGAGGTCAATAAA 59.480 47.826 0.00 0.00 0.00 1.40
1127 2636 3.107601 CTGGTCTGGAGGAGGTCAATAA 58.892 50.000 0.00 0.00 0.00 1.40
1128 2637 2.314852 TCTGGTCTGGAGGAGGTCAATA 59.685 50.000 0.00 0.00 0.00 1.90
1129 2638 1.079490 TCTGGTCTGGAGGAGGTCAAT 59.921 52.381 0.00 0.00 0.00 2.57
1130 2639 0.487325 TCTGGTCTGGAGGAGGTCAA 59.513 55.000 0.00 0.00 0.00 3.18
1131 2640 0.040351 CTCTGGTCTGGAGGAGGTCA 59.960 60.000 0.00 0.00 0.00 4.02
1132 2641 0.333312 TCTCTGGTCTGGAGGAGGTC 59.667 60.000 0.00 0.00 0.00 3.85
1133 2642 0.334676 CTCTCTGGTCTGGAGGAGGT 59.665 60.000 0.00 0.00 0.00 3.85
1134 2643 0.396974 CCTCTCTGGTCTGGAGGAGG 60.397 65.000 2.40 0.00 46.82 4.30
1135 2644 3.205815 CCTCTCTGGTCTGGAGGAG 57.794 63.158 2.40 0.00 46.82 3.69
1137 2646 3.205815 CTCCTCTCTGGTCTGGAGG 57.794 63.158 0.00 0.00 45.65 4.30
1138 2647 0.334676 ACCTCCTCTCTGGTCTGGAG 59.665 60.000 0.00 0.00 44.06 3.86
1139 2648 0.333312 GACCTCCTCTCTGGTCTGGA 59.667 60.000 5.05 0.00 46.65 3.86
1140 2649 2.894858 GACCTCCTCTCTGGTCTGG 58.105 63.158 5.05 0.00 46.65 3.86
1144 2653 3.251484 TCAATTTGACCTCCTCTCTGGT 58.749 45.455 0.00 0.00 39.60 4.00
1145 2654 3.988976 TCAATTTGACCTCCTCTCTGG 57.011 47.619 0.00 0.00 37.10 3.86
1146 2655 6.349944 CCAATTTCAATTTGACCTCCTCTCTG 60.350 42.308 0.00 0.00 0.00 3.35
1147 2656 5.713861 CCAATTTCAATTTGACCTCCTCTCT 59.286 40.000 0.00 0.00 0.00 3.10
1148 2657 5.711976 TCCAATTTCAATTTGACCTCCTCTC 59.288 40.000 0.00 0.00 0.00 3.20
1149 2658 5.644188 TCCAATTTCAATTTGACCTCCTCT 58.356 37.500 0.00 0.00 0.00 3.69
1150 2659 5.478332 ACTCCAATTTCAATTTGACCTCCTC 59.522 40.000 0.00 0.00 0.00 3.71
1151 2660 5.397360 ACTCCAATTTCAATTTGACCTCCT 58.603 37.500 0.00 0.00 0.00 3.69
1152 2661 5.728637 ACTCCAATTTCAATTTGACCTCC 57.271 39.130 0.00 0.00 0.00 4.30
1153 2662 7.657336 TGTAACTCCAATTTCAATTTGACCTC 58.343 34.615 0.00 0.00 0.00 3.85
1154 2663 7.595819 TGTAACTCCAATTTCAATTTGACCT 57.404 32.000 0.00 0.00 0.00 3.85
1155 2664 8.831715 ATTGTAACTCCAATTTCAATTTGACC 57.168 30.769 0.00 0.00 31.01 4.02
1186 2695 9.872757 CGAAGCAGAGTAAAATAACTTAACAAA 57.127 29.630 0.00 0.00 0.00 2.83
1187 2696 9.263538 TCGAAGCAGAGTAAAATAACTTAACAA 57.736 29.630 0.00 0.00 0.00 2.83
1188 2697 8.706035 GTCGAAGCAGAGTAAAATAACTTAACA 58.294 33.333 0.00 0.00 0.00 2.41
1189 2698 8.706035 TGTCGAAGCAGAGTAAAATAACTTAAC 58.294 33.333 0.00 0.00 0.00 2.01
1190 2699 8.821147 TGTCGAAGCAGAGTAAAATAACTTAA 57.179 30.769 0.00 0.00 0.00 1.85
1191 2700 8.997621 ATGTCGAAGCAGAGTAAAATAACTTA 57.002 30.769 0.00 0.00 0.00 2.24
1192 2701 7.907214 ATGTCGAAGCAGAGTAAAATAACTT 57.093 32.000 0.00 0.00 0.00 2.66
1193 2702 8.997621 TTATGTCGAAGCAGAGTAAAATAACT 57.002 30.769 0.00 0.00 0.00 2.24
1194 2703 9.084164 TCTTATGTCGAAGCAGAGTAAAATAAC 57.916 33.333 0.00 0.00 0.00 1.89
1195 2704 9.817809 ATCTTATGTCGAAGCAGAGTAAAATAA 57.182 29.630 0.00 0.00 0.00 1.40
1197 2706 9.469807 CTATCTTATGTCGAAGCAGAGTAAAAT 57.530 33.333 0.00 0.00 0.00 1.82
1198 2707 8.683615 TCTATCTTATGTCGAAGCAGAGTAAAA 58.316 33.333 0.00 0.00 0.00 1.52
1199 2708 8.221965 TCTATCTTATGTCGAAGCAGAGTAAA 57.778 34.615 0.00 0.00 0.00 2.01
1200 2709 7.803279 TCTATCTTATGTCGAAGCAGAGTAA 57.197 36.000 0.00 0.00 0.00 2.24
1201 2710 7.094592 CCATCTATCTTATGTCGAAGCAGAGTA 60.095 40.741 0.00 0.00 0.00 2.59
1202 2711 6.294453 CCATCTATCTTATGTCGAAGCAGAGT 60.294 42.308 0.00 0.00 0.00 3.24
1203 2712 6.072230 TCCATCTATCTTATGTCGAAGCAGAG 60.072 42.308 0.00 0.00 0.00 3.35
1204 2713 5.770162 TCCATCTATCTTATGTCGAAGCAGA 59.230 40.000 0.00 0.00 0.00 4.26
1205 2714 6.018589 TCCATCTATCTTATGTCGAAGCAG 57.981 41.667 0.00 0.00 0.00 4.24
1206 2715 6.405278 TTCCATCTATCTTATGTCGAAGCA 57.595 37.500 0.00 0.00 0.00 3.91
1207 2716 7.062839 GTGATTCCATCTATCTTATGTCGAAGC 59.937 40.741 0.00 0.00 0.00 3.86
1208 2717 7.272299 CGTGATTCCATCTATCTTATGTCGAAG 59.728 40.741 0.00 0.00 0.00 3.79
1209 2718 7.084486 CGTGATTCCATCTATCTTATGTCGAA 58.916 38.462 0.00 0.00 0.00 3.71
1210 2719 6.612306 CGTGATTCCATCTATCTTATGTCGA 58.388 40.000 0.00 0.00 0.00 4.20
1211 2720 5.287274 GCGTGATTCCATCTATCTTATGTCG 59.713 44.000 0.00 0.00 0.00 4.35
1212 2721 6.393990 AGCGTGATTCCATCTATCTTATGTC 58.606 40.000 0.00 0.00 0.00 3.06
1213 2722 6.210385 AGAGCGTGATTCCATCTATCTTATGT 59.790 38.462 0.00 0.00 0.00 2.29
1214 2723 6.530887 CAGAGCGTGATTCCATCTATCTTATG 59.469 42.308 0.00 0.00 0.00 1.90
1215 2724 6.210385 ACAGAGCGTGATTCCATCTATCTTAT 59.790 38.462 0.00 0.00 0.00 1.73
1216 2725 5.536538 ACAGAGCGTGATTCCATCTATCTTA 59.463 40.000 0.00 0.00 0.00 2.10
1217 2726 4.343526 ACAGAGCGTGATTCCATCTATCTT 59.656 41.667 0.00 0.00 0.00 2.40
1218 2727 3.894427 ACAGAGCGTGATTCCATCTATCT 59.106 43.478 0.00 0.00 0.00 1.98
1219 2728 4.250116 ACAGAGCGTGATTCCATCTATC 57.750 45.455 0.00 0.00 0.00 2.08
1220 2729 4.219507 CCTACAGAGCGTGATTCCATCTAT 59.780 45.833 0.00 0.00 0.00 1.98
1221 2730 3.570125 CCTACAGAGCGTGATTCCATCTA 59.430 47.826 0.00 0.00 0.00 1.98
1222 2731 2.363680 CCTACAGAGCGTGATTCCATCT 59.636 50.000 0.00 0.00 0.00 2.90
1223 2732 2.362397 TCCTACAGAGCGTGATTCCATC 59.638 50.000 0.00 0.00 0.00 3.51
1224 2733 2.388735 TCCTACAGAGCGTGATTCCAT 58.611 47.619 0.00 0.00 0.00 3.41
1225 2734 1.847328 TCCTACAGAGCGTGATTCCA 58.153 50.000 0.00 0.00 0.00 3.53
1226 2735 3.460857 AATCCTACAGAGCGTGATTCC 57.539 47.619 0.00 0.00 0.00 3.01
1227 2736 4.433615 TCAAATCCTACAGAGCGTGATTC 58.566 43.478 0.00 0.00 0.00 2.52
1228 2737 4.471904 TCAAATCCTACAGAGCGTGATT 57.528 40.909 0.00 0.00 0.00 2.57
1229 2738 4.184629 GTTCAAATCCTACAGAGCGTGAT 58.815 43.478 0.00 0.00 0.00 3.06
1230 2739 3.585862 GTTCAAATCCTACAGAGCGTGA 58.414 45.455 0.00 0.00 0.00 4.35
1231 2740 2.673368 GGTTCAAATCCTACAGAGCGTG 59.327 50.000 0.00 0.00 0.00 5.34
1232 2741 2.567615 AGGTTCAAATCCTACAGAGCGT 59.432 45.455 0.00 0.00 33.04 5.07
1233 2742 2.932614 CAGGTTCAAATCCTACAGAGCG 59.067 50.000 0.00 0.00 33.54 5.03
1234 2743 2.680339 GCAGGTTCAAATCCTACAGAGC 59.320 50.000 0.00 0.00 33.54 4.09
1235 2744 3.942829 TGCAGGTTCAAATCCTACAGAG 58.057 45.455 0.00 0.00 33.54 3.35
1236 2745 4.365514 TTGCAGGTTCAAATCCTACAGA 57.634 40.909 0.00 0.00 31.10 3.41
1237 2746 5.452078 TTTTGCAGGTTCAAATCCTACAG 57.548 39.130 0.00 0.00 36.04 2.74
1238 2747 5.335583 CGATTTTGCAGGTTCAAATCCTACA 60.336 40.000 12.83 0.00 36.04 2.74
1239 2748 5.095490 CGATTTTGCAGGTTCAAATCCTAC 58.905 41.667 12.83 0.00 36.04 3.18
1240 2749 4.157656 CCGATTTTGCAGGTTCAAATCCTA 59.842 41.667 12.83 0.00 36.04 2.94
1241 2750 3.056607 CCGATTTTGCAGGTTCAAATCCT 60.057 43.478 12.83 0.00 36.04 3.24
1242 2751 3.253230 CCGATTTTGCAGGTTCAAATCC 58.747 45.455 12.83 0.27 36.04 3.01
1243 2752 3.253230 CCCGATTTTGCAGGTTCAAATC 58.747 45.455 9.73 9.73 36.04 2.17
1244 2753 2.632512 ACCCGATTTTGCAGGTTCAAAT 59.367 40.909 0.00 0.00 36.04 2.32
1245 2754 2.035632 ACCCGATTTTGCAGGTTCAAA 58.964 42.857 0.00 0.00 34.47 2.69
1246 2755 1.698506 ACCCGATTTTGCAGGTTCAA 58.301 45.000 0.00 0.00 0.00 2.69
1247 2756 1.698506 AACCCGATTTTGCAGGTTCA 58.301 45.000 0.16 0.00 38.17 3.18
1248 2757 2.163613 CCTAACCCGATTTTGCAGGTTC 59.836 50.000 8.90 0.00 41.63 3.62
1249 2758 2.167662 CCTAACCCGATTTTGCAGGTT 58.832 47.619 10.30 10.30 44.61 3.50
1250 2759 1.615919 CCCTAACCCGATTTTGCAGGT 60.616 52.381 0.00 0.00 0.00 4.00
1251 2760 1.102978 CCCTAACCCGATTTTGCAGG 58.897 55.000 0.00 0.00 0.00 4.85
1252 2761 1.102978 CCCCTAACCCGATTTTGCAG 58.897 55.000 0.00 0.00 0.00 4.41
1253 2762 0.406361 ACCCCTAACCCGATTTTGCA 59.594 50.000 0.00 0.00 0.00 4.08
1254 2763 0.815095 CACCCCTAACCCGATTTTGC 59.185 55.000 0.00 0.00 0.00 3.68
1255 2764 1.004979 TCCACCCCTAACCCGATTTTG 59.995 52.381 0.00 0.00 0.00 2.44
1256 2765 1.374572 TCCACCCCTAACCCGATTTT 58.625 50.000 0.00 0.00 0.00 1.82
1257 2766 1.603634 ATCCACCCCTAACCCGATTT 58.396 50.000 0.00 0.00 0.00 2.17
1258 2767 2.500269 TATCCACCCCTAACCCGATT 57.500 50.000 0.00 0.00 0.00 3.34
1259 2768 2.500269 TTATCCACCCCTAACCCGAT 57.500 50.000 0.00 0.00 0.00 4.18
1260 2769 2.500269 ATTATCCACCCCTAACCCGA 57.500 50.000 0.00 0.00 0.00 5.14
1261 2770 3.513517 TCTATTATCCACCCCTAACCCG 58.486 50.000 0.00 0.00 0.00 5.28
1262 2771 4.161754 CGATCTATTATCCACCCCTAACCC 59.838 50.000 0.00 0.00 0.00 4.11
1263 2772 5.021458 TCGATCTATTATCCACCCCTAACC 58.979 45.833 0.00 0.00 0.00 2.85
1264 2773 6.793505 ATCGATCTATTATCCACCCCTAAC 57.206 41.667 0.00 0.00 0.00 2.34
1265 2774 8.286620 TCATATCGATCTATTATCCACCCCTAA 58.713 37.037 0.00 0.00 0.00 2.69
1266 2775 7.822600 TCATATCGATCTATTATCCACCCCTA 58.177 38.462 0.00 0.00 0.00 3.53
1267 2776 6.683537 TCATATCGATCTATTATCCACCCCT 58.316 40.000 0.00 0.00 0.00 4.79
1268 2777 6.978674 TCATATCGATCTATTATCCACCCC 57.021 41.667 0.00 0.00 0.00 4.95
1269 2778 8.239038 TCTTCATATCGATCTATTATCCACCC 57.761 38.462 0.00 0.00 0.00 4.61
1411 2923 0.877071 TCGTTGTGGTCGGACTCTAC 59.123 55.000 8.23 7.91 0.00 2.59
1663 3176 9.638176 AAGTGGCTCTATTTCATTCTATTTCAT 57.362 29.630 0.00 0.00 0.00 2.57
1750 3263 9.507329 AACAATATGAGTAAGAAGCTTCTTTCA 57.493 29.630 38.82 34.61 44.70 2.69
1763 3276 5.795972 TCAACCCGTGAACAATATGAGTAA 58.204 37.500 0.00 0.00 31.51 2.24
1764 3277 5.186215 TCTCAACCCGTGAACAATATGAGTA 59.814 40.000 0.00 0.00 35.22 2.59
1779 3292 2.943978 AACTCCCGCTCTCAACCCG 61.944 63.158 0.00 0.00 0.00 5.28
1856 3369 3.255149 CCTACGACCAGTCAGTTAACAGT 59.745 47.826 8.61 0.00 0.00 3.55
1881 3394 7.713704 ATAAAATCTCCCCAAGTAGGATTCT 57.286 36.000 0.00 0.00 41.22 2.40
1989 3502 7.530426 AGAAACAGAAACAAGGATAGCAAAT 57.470 32.000 0.00 0.00 0.00 2.32
1992 3505 7.665559 ACAATAGAAACAGAAACAAGGATAGCA 59.334 33.333 0.00 0.00 0.00 3.49
2058 3577 8.548877 TGAACTTAGGTATGCTCTTTCCTTTAT 58.451 33.333 0.00 0.00 0.00 1.40
2059 3578 7.913789 TGAACTTAGGTATGCTCTTTCCTTTA 58.086 34.615 0.00 0.00 0.00 1.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.