Multiple sequence alignment - TraesCS7D01G136300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G136300 chr7D 100.000 4061 0 0 427 4487 87481854 87477794 0.000000e+00 7500.0
1 TraesCS7D01G136300 chr7D 100.000 109 0 0 1 109 87482280 87482172 7.610000e-48 202.0
2 TraesCS7D01G136300 chr7A 87.294 3148 206 82 766 3821 88989898 88986853 0.000000e+00 3419.0
3 TraesCS7D01G136300 chr7A 86.726 113 9 5 648 758 88990043 88989935 2.190000e-23 121.0
4 TraesCS7D01G136300 chr7B 86.526 2323 146 78 629 2846 36458854 36456594 0.000000e+00 2401.0
5 TraesCS7D01G136300 chr7B 89.398 1179 71 20 2916 4050 36456606 36455438 0.000000e+00 1435.0
6 TraesCS7D01G136300 chr7B 86.797 462 37 12 4048 4487 36455411 36454952 1.120000e-135 494.0
7 TraesCS7D01G136300 chr7B 100.000 31 0 0 4137 4167 16131055 16131025 1.740000e-04 58.4
8 TraesCS7D01G136300 chr5B 87.912 91 10 1 4336 4425 234314350 234314440 6.140000e-19 106.0
9 TraesCS7D01G136300 chr4B 89.706 68 7 0 4417 4484 25793464 25793531 2.220000e-13 87.9
10 TraesCS7D01G136300 chr4D 93.182 44 1 2 498 540 222970857 222970815 3.750000e-06 63.9
11 TraesCS7D01G136300 chr4A 76.923 117 24 3 498 611 738135183 738135067 3.750000e-06 63.9
12 TraesCS7D01G136300 chr5A 89.362 47 3 2 498 543 668766711 668766666 1.740000e-04 58.4
13 TraesCS7D01G136300 chr2B 100.000 28 0 0 498 525 529764069 529764096 8.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G136300 chr7D 87477794 87482280 4486 True 3851.000000 7500 100.000000 1 4487 2 chr7D.!!$R1 4486
1 TraesCS7D01G136300 chr7A 88986853 88990043 3190 True 1770.000000 3419 87.010000 648 3821 2 chr7A.!!$R1 3173
2 TraesCS7D01G136300 chr7B 36454952 36458854 3902 True 1443.333333 2401 87.573667 629 4487 3 chr7B.!!$R2 3858

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
480 481 0.519961 CCGAAACTTTTACCGGCTGG 59.480 55.0 11.02 11.02 42.84 4.85 F
1720 1809 0.034198 TCGGTCACCTCGAATTGCAA 59.966 50.0 0.00 0.00 33.42 4.08 F
2445 2567 0.473755 AACATGCAGTGGTCTGTGGA 59.526 50.0 0.00 0.00 43.05 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1911 2010 0.535335 CTTAGCAACGAGGTGGGCTA 59.465 55.0 0.00 0.0 37.79 3.93 R
3319 3479 0.109132 GGTTGAAAAGGCAGCCGATG 60.109 55.0 5.55 0.0 29.40 3.84 R
3849 4033 0.031449 CGTGCCGGGTGAAACAAAAT 59.969 50.0 2.18 0.0 39.98 1.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.492102 ATAACATATGCCGCCAGAAGT 57.508 42.857 1.58 0.00 0.00 3.01
21 22 2.128771 AACATATGCCGCCAGAAGTT 57.871 45.000 1.58 0.00 0.00 2.66
22 23 3.275617 AACATATGCCGCCAGAAGTTA 57.724 42.857 1.58 0.00 0.00 2.24
23 24 3.275617 ACATATGCCGCCAGAAGTTAA 57.724 42.857 1.58 0.00 0.00 2.01
24 25 3.820557 ACATATGCCGCCAGAAGTTAAT 58.179 40.909 1.58 0.00 0.00 1.40
25 26 4.968259 ACATATGCCGCCAGAAGTTAATA 58.032 39.130 1.58 0.00 0.00 0.98
26 27 5.560724 ACATATGCCGCCAGAAGTTAATAT 58.439 37.500 1.58 0.00 0.00 1.28
27 28 5.412594 ACATATGCCGCCAGAAGTTAATATG 59.587 40.000 1.58 0.00 34.45 1.78
28 29 2.571212 TGCCGCCAGAAGTTAATATGG 58.429 47.619 0.00 0.00 35.84 2.74
29 30 1.880027 GCCGCCAGAAGTTAATATGGG 59.120 52.381 0.00 0.00 33.23 4.00
30 31 2.486548 GCCGCCAGAAGTTAATATGGGA 60.487 50.000 0.00 0.00 33.23 4.37
31 32 3.815809 CCGCCAGAAGTTAATATGGGAA 58.184 45.455 0.00 0.00 33.23 3.97
32 33 4.204012 CCGCCAGAAGTTAATATGGGAAA 58.796 43.478 0.00 0.00 33.23 3.13
33 34 4.827284 CCGCCAGAAGTTAATATGGGAAAT 59.173 41.667 0.00 0.00 33.23 2.17
34 35 6.001460 CCGCCAGAAGTTAATATGGGAAATA 58.999 40.000 0.00 0.00 33.23 1.40
35 36 6.488683 CCGCCAGAAGTTAATATGGGAAATAA 59.511 38.462 0.00 0.00 33.23 1.40
36 37 7.360361 CGCCAGAAGTTAATATGGGAAATAAC 58.640 38.462 0.00 0.00 33.23 1.89
37 38 7.012894 CGCCAGAAGTTAATATGGGAAATAACA 59.987 37.037 0.00 0.00 33.23 2.41
38 39 8.352942 GCCAGAAGTTAATATGGGAAATAACAG 58.647 37.037 0.00 0.00 33.23 3.16
39 40 9.627123 CCAGAAGTTAATATGGGAAATAACAGA 57.373 33.333 0.00 0.00 32.10 3.41
51 52 7.771183 TGGGAAATAACAGAATATTGTTGAGC 58.229 34.615 0.00 0.00 41.18 4.26
52 53 7.395772 TGGGAAATAACAGAATATTGTTGAGCA 59.604 33.333 0.00 0.00 41.18 4.26
53 54 7.917505 GGGAAATAACAGAATATTGTTGAGCAG 59.082 37.037 0.00 0.00 41.18 4.24
54 55 7.917505 GGAAATAACAGAATATTGTTGAGCAGG 59.082 37.037 0.00 0.00 41.18 4.85
55 56 6.949352 ATAACAGAATATTGTTGAGCAGGG 57.051 37.500 0.00 0.00 41.18 4.45
56 57 4.574674 ACAGAATATTGTTGAGCAGGGA 57.425 40.909 0.00 0.00 0.00 4.20
57 58 5.121380 ACAGAATATTGTTGAGCAGGGAT 57.879 39.130 0.00 0.00 0.00 3.85
58 59 5.513233 ACAGAATATTGTTGAGCAGGGATT 58.487 37.500 0.00 0.00 0.00 3.01
59 60 5.359009 ACAGAATATTGTTGAGCAGGGATTG 59.641 40.000 0.00 0.00 0.00 2.67
60 61 5.359009 CAGAATATTGTTGAGCAGGGATTGT 59.641 40.000 0.00 0.00 0.00 2.71
61 62 5.359009 AGAATATTGTTGAGCAGGGATTGTG 59.641 40.000 0.00 0.00 0.00 3.33
62 63 2.655090 TTGTTGAGCAGGGATTGTGA 57.345 45.000 0.00 0.00 0.00 3.58
63 64 2.885135 TGTTGAGCAGGGATTGTGAT 57.115 45.000 0.00 0.00 0.00 3.06
64 65 2.439409 TGTTGAGCAGGGATTGTGATG 58.561 47.619 0.00 0.00 0.00 3.07
65 66 2.040145 TGTTGAGCAGGGATTGTGATGA 59.960 45.455 0.00 0.00 0.00 2.92
66 67 3.084039 GTTGAGCAGGGATTGTGATGAA 58.916 45.455 0.00 0.00 0.00 2.57
67 68 3.438216 TGAGCAGGGATTGTGATGAAA 57.562 42.857 0.00 0.00 0.00 2.69
68 69 3.765381 TGAGCAGGGATTGTGATGAAAA 58.235 40.909 0.00 0.00 0.00 2.29
69 70 4.346730 TGAGCAGGGATTGTGATGAAAAT 58.653 39.130 0.00 0.00 0.00 1.82
70 71 4.773674 TGAGCAGGGATTGTGATGAAAATT 59.226 37.500 0.00 0.00 0.00 1.82
71 72 5.080969 AGCAGGGATTGTGATGAAAATTG 57.919 39.130 0.00 0.00 0.00 2.32
72 73 4.081309 AGCAGGGATTGTGATGAAAATTGG 60.081 41.667 0.00 0.00 0.00 3.16
73 74 4.761975 CAGGGATTGTGATGAAAATTGGG 58.238 43.478 0.00 0.00 0.00 4.12
74 75 4.223477 CAGGGATTGTGATGAAAATTGGGT 59.777 41.667 0.00 0.00 0.00 4.51
75 76 5.421693 CAGGGATTGTGATGAAAATTGGGTA 59.578 40.000 0.00 0.00 0.00 3.69
76 77 6.022315 AGGGATTGTGATGAAAATTGGGTAA 58.978 36.000 0.00 0.00 0.00 2.85
77 78 6.070824 AGGGATTGTGATGAAAATTGGGTAAC 60.071 38.462 0.00 0.00 0.00 2.50
91 92 2.913777 GGTAACCTCGAATTGCAACC 57.086 50.000 0.00 0.00 0.00 3.77
92 93 2.156098 GGTAACCTCGAATTGCAACCA 58.844 47.619 0.00 0.00 0.00 3.67
93 94 2.554893 GGTAACCTCGAATTGCAACCAA 59.445 45.455 0.00 0.00 35.01 3.67
94 95 3.365969 GGTAACCTCGAATTGCAACCAAG 60.366 47.826 0.00 0.00 33.80 3.61
95 96 2.270352 ACCTCGAATTGCAACCAAGA 57.730 45.000 0.00 0.00 33.80 3.02
96 97 2.795329 ACCTCGAATTGCAACCAAGAT 58.205 42.857 0.00 0.00 33.80 2.40
97 98 3.950397 ACCTCGAATTGCAACCAAGATA 58.050 40.909 0.00 0.00 33.80 1.98
98 99 4.526970 ACCTCGAATTGCAACCAAGATAT 58.473 39.130 0.00 0.00 33.80 1.63
99 100 4.336433 ACCTCGAATTGCAACCAAGATATG 59.664 41.667 0.00 0.00 33.80 1.78
100 101 4.285292 CTCGAATTGCAACCAAGATATGC 58.715 43.478 0.00 0.00 40.45 3.14
106 107 4.374843 TGCAACCAAGATATGCATCAAC 57.625 40.909 0.19 0.00 44.52 3.18
107 108 3.762823 TGCAACCAAGATATGCATCAACA 59.237 39.130 0.19 0.00 44.52 3.33
108 109 4.403113 TGCAACCAAGATATGCATCAACAT 59.597 37.500 0.19 0.00 44.52 2.71
446 447 1.232119 AAACGACGTTCCAATCACCC 58.768 50.000 14.58 0.00 0.00 4.61
447 448 0.947180 AACGACGTTCCAATCACCCG 60.947 55.000 7.57 0.00 0.00 5.28
448 449 2.098233 CGACGTTCCAATCACCCGG 61.098 63.158 0.00 0.00 0.00 5.73
449 450 1.004200 GACGTTCCAATCACCCGGT 60.004 57.895 0.00 0.00 0.00 5.28
450 451 0.604511 GACGTTCCAATCACCCGGTT 60.605 55.000 0.00 0.00 0.00 4.44
451 452 0.604511 ACGTTCCAATCACCCGGTTC 60.605 55.000 0.00 0.00 0.00 3.62
452 453 1.632046 CGTTCCAATCACCCGGTTCG 61.632 60.000 0.00 0.00 0.00 3.95
454 455 1.770749 TTCCAATCACCCGGTTCGGT 61.771 55.000 0.00 0.00 46.80 4.69
469 470 4.415783 GGTGCCCATCCGAAACTT 57.584 55.556 0.00 0.00 0.00 2.66
470 471 2.653557 GGTGCCCATCCGAAACTTT 58.346 52.632 0.00 0.00 0.00 2.66
471 472 0.966179 GGTGCCCATCCGAAACTTTT 59.034 50.000 0.00 0.00 0.00 2.27
472 473 2.164338 GGTGCCCATCCGAAACTTTTA 58.836 47.619 0.00 0.00 0.00 1.52
473 474 2.094906 GGTGCCCATCCGAAACTTTTAC 60.095 50.000 0.00 0.00 0.00 2.01
474 475 2.094906 GTGCCCATCCGAAACTTTTACC 60.095 50.000 0.00 0.00 0.00 2.85
475 476 1.131693 GCCCATCCGAAACTTTTACCG 59.868 52.381 0.00 0.00 0.00 4.02
476 477 1.741145 CCCATCCGAAACTTTTACCGG 59.259 52.381 0.00 0.00 43.02 5.28
477 478 1.131693 CCATCCGAAACTTTTACCGGC 59.868 52.381 0.00 0.00 41.55 6.13
478 479 2.081462 CATCCGAAACTTTTACCGGCT 58.919 47.619 0.00 0.00 41.55 5.52
479 480 1.515081 TCCGAAACTTTTACCGGCTG 58.485 50.000 0.00 0.00 41.55 4.85
480 481 0.519961 CCGAAACTTTTACCGGCTGG 59.480 55.000 11.02 11.02 42.84 4.85
490 491 4.395519 CCGGCTGGTCACAATGAA 57.604 55.556 2.29 0.00 0.00 2.57
491 492 2.639970 CCGGCTGGTCACAATGAAA 58.360 52.632 2.29 0.00 0.00 2.69
492 493 0.958091 CCGGCTGGTCACAATGAAAA 59.042 50.000 2.29 0.00 0.00 2.29
493 494 1.339610 CCGGCTGGTCACAATGAAAAA 59.660 47.619 2.29 0.00 0.00 1.94
494 495 2.029110 CCGGCTGGTCACAATGAAAAAT 60.029 45.455 2.29 0.00 0.00 1.82
495 496 3.192422 CCGGCTGGTCACAATGAAAAATA 59.808 43.478 2.29 0.00 0.00 1.40
496 497 4.165779 CGGCTGGTCACAATGAAAAATAC 58.834 43.478 0.00 0.00 0.00 1.89
497 498 4.494484 GGCTGGTCACAATGAAAAATACC 58.506 43.478 0.00 0.00 0.00 2.73
498 499 4.021544 GGCTGGTCACAATGAAAAATACCA 60.022 41.667 0.00 0.00 34.52 3.25
499 500 5.337491 GGCTGGTCACAATGAAAAATACCAT 60.337 40.000 0.00 0.00 35.16 3.55
500 501 6.127479 GGCTGGTCACAATGAAAAATACCATA 60.127 38.462 0.00 0.00 35.16 2.74
501 502 7.417797 GGCTGGTCACAATGAAAAATACCATAT 60.418 37.037 0.00 0.00 35.16 1.78
502 503 8.629158 GCTGGTCACAATGAAAAATACCATATA 58.371 33.333 0.00 0.00 35.16 0.86
545 546 6.874288 ACTGTCGTATTATACTACCTCCAC 57.126 41.667 4.88 0.00 0.00 4.02
546 547 6.359804 ACTGTCGTATTATACTACCTCCACA 58.640 40.000 4.88 0.00 0.00 4.17
547 548 6.830324 ACTGTCGTATTATACTACCTCCACAA 59.170 38.462 4.88 0.00 0.00 3.33
548 549 7.504911 ACTGTCGTATTATACTACCTCCACAAT 59.495 37.037 4.88 0.00 0.00 2.71
549 550 7.879070 TGTCGTATTATACTACCTCCACAATC 58.121 38.462 4.88 0.00 0.00 2.67
550 551 7.040201 TGTCGTATTATACTACCTCCACAATCC 60.040 40.741 4.88 0.00 0.00 3.01
551 552 7.005902 TCGTATTATACTACCTCCACAATCCA 58.994 38.462 0.69 0.00 0.00 3.41
552 553 7.040201 TCGTATTATACTACCTCCACAATCCAC 60.040 40.741 0.69 0.00 0.00 4.02
553 554 7.255695 CGTATTATACTACCTCCACAATCCACA 60.256 40.741 0.69 0.00 0.00 4.17
554 555 6.877668 TTATACTACCTCCACAATCCACAA 57.122 37.500 0.00 0.00 0.00 3.33
555 556 5.975988 ATACTACCTCCACAATCCACAAT 57.024 39.130 0.00 0.00 0.00 2.71
556 557 8.555896 TTATACTACCTCCACAATCCACAATA 57.444 34.615 0.00 0.00 0.00 1.90
557 558 5.975988 ACTACCTCCACAATCCACAATAT 57.024 39.130 0.00 0.00 0.00 1.28
558 559 5.930135 ACTACCTCCACAATCCACAATATC 58.070 41.667 0.00 0.00 0.00 1.63
559 560 4.860802 ACCTCCACAATCCACAATATCA 57.139 40.909 0.00 0.00 0.00 2.15
560 561 5.393068 ACCTCCACAATCCACAATATCAT 57.607 39.130 0.00 0.00 0.00 2.45
561 562 6.514012 ACCTCCACAATCCACAATATCATA 57.486 37.500 0.00 0.00 0.00 2.15
562 563 6.537355 ACCTCCACAATCCACAATATCATAG 58.463 40.000 0.00 0.00 0.00 2.23
563 564 6.101734 ACCTCCACAATCCACAATATCATAGT 59.898 38.462 0.00 0.00 0.00 2.12
564 565 7.000472 CCTCCACAATCCACAATATCATAGTT 59.000 38.462 0.00 0.00 0.00 2.24
565 566 7.503566 CCTCCACAATCCACAATATCATAGTTT 59.496 37.037 0.00 0.00 0.00 2.66
566 567 8.224389 TCCACAATCCACAATATCATAGTTTG 57.776 34.615 0.00 0.00 0.00 2.93
567 568 7.285172 TCCACAATCCACAATATCATAGTTTGG 59.715 37.037 0.00 0.00 0.00 3.28
568 569 7.068593 CCACAATCCACAATATCATAGTTTGGT 59.931 37.037 0.00 0.00 0.00 3.67
569 570 9.119418 CACAATCCACAATATCATAGTTTGGTA 57.881 33.333 0.00 0.00 0.00 3.25
570 571 9.866655 ACAATCCACAATATCATAGTTTGGTAT 57.133 29.630 0.00 0.00 32.79 2.73
579 580 9.672673 AATATCATAGTTTGGTATCATAGTGCC 57.327 33.333 0.00 0.00 29.99 5.01
580 581 6.747414 TCATAGTTTGGTATCATAGTGCCT 57.253 37.500 0.00 0.00 0.00 4.75
581 582 7.849322 TCATAGTTTGGTATCATAGTGCCTA 57.151 36.000 0.00 0.00 0.00 3.93
582 583 8.257602 TCATAGTTTGGTATCATAGTGCCTAA 57.742 34.615 0.00 0.00 0.00 2.69
583 584 8.880244 TCATAGTTTGGTATCATAGTGCCTAAT 58.120 33.333 0.00 0.00 0.00 1.73
584 585 9.507329 CATAGTTTGGTATCATAGTGCCTAATT 57.493 33.333 0.00 0.00 0.00 1.40
585 586 9.726438 ATAGTTTGGTATCATAGTGCCTAATTC 57.274 33.333 0.00 0.00 0.00 2.17
586 587 7.573710 AGTTTGGTATCATAGTGCCTAATTCA 58.426 34.615 0.00 0.00 0.00 2.57
587 588 8.220559 AGTTTGGTATCATAGTGCCTAATTCAT 58.779 33.333 0.00 0.00 0.00 2.57
588 589 8.850156 GTTTGGTATCATAGTGCCTAATTCATT 58.150 33.333 0.00 0.00 0.00 2.57
589 590 7.984422 TGGTATCATAGTGCCTAATTCATTG 57.016 36.000 0.00 0.00 0.00 2.82
590 591 7.517320 TGGTATCATAGTGCCTAATTCATTGT 58.483 34.615 0.00 0.00 0.00 2.71
591 592 7.661437 TGGTATCATAGTGCCTAATTCATTGTC 59.339 37.037 0.00 0.00 0.00 3.18
592 593 7.661437 GGTATCATAGTGCCTAATTCATTGTCA 59.339 37.037 0.00 0.00 0.00 3.58
593 594 6.925610 TCATAGTGCCTAATTCATTGTCAC 57.074 37.500 0.00 0.00 0.00 3.67
594 595 5.523552 TCATAGTGCCTAATTCATTGTCACG 59.476 40.000 0.00 0.00 0.00 4.35
595 596 2.420022 AGTGCCTAATTCATTGTCACGC 59.580 45.455 0.00 0.00 0.00 5.34
596 597 2.161410 GTGCCTAATTCATTGTCACGCA 59.839 45.455 0.00 0.00 0.00 5.24
597 598 3.016031 TGCCTAATTCATTGTCACGCAT 58.984 40.909 0.00 0.00 0.00 4.73
598 599 4.035091 GTGCCTAATTCATTGTCACGCATA 59.965 41.667 0.00 0.00 0.00 3.14
599 600 4.035091 TGCCTAATTCATTGTCACGCATAC 59.965 41.667 0.00 0.00 0.00 2.39
600 601 4.035091 GCCTAATTCATTGTCACGCATACA 59.965 41.667 0.00 0.00 0.00 2.29
601 602 5.501715 CCTAATTCATTGTCACGCATACAC 58.498 41.667 0.00 0.00 0.00 2.90
602 603 5.064579 CCTAATTCATTGTCACGCATACACA 59.935 40.000 0.00 0.00 0.00 3.72
603 604 5.565592 AATTCATTGTCACGCATACACAT 57.434 34.783 0.00 0.00 0.00 3.21
604 605 6.676237 AATTCATTGTCACGCATACACATA 57.324 33.333 0.00 0.00 0.00 2.29
605 606 5.463499 TTCATTGTCACGCATACACATAC 57.537 39.130 0.00 0.00 0.00 2.39
606 607 4.754322 TCATTGTCACGCATACACATACT 58.246 39.130 0.00 0.00 0.00 2.12
607 608 5.897050 TCATTGTCACGCATACACATACTA 58.103 37.500 0.00 0.00 0.00 1.82
608 609 5.977129 TCATTGTCACGCATACACATACTAG 59.023 40.000 0.00 0.00 0.00 2.57
609 610 4.976224 TGTCACGCATACACATACTAGT 57.024 40.909 0.00 0.00 0.00 2.57
610 611 6.439675 TTGTCACGCATACACATACTAGTA 57.560 37.500 4.77 4.77 0.00 1.82
611 612 6.439675 TGTCACGCATACACATACTAGTAA 57.560 37.500 6.70 0.00 0.00 2.24
612 613 6.260377 TGTCACGCATACACATACTAGTAAC 58.740 40.000 6.70 0.00 0.00 2.50
613 614 6.094464 TGTCACGCATACACATACTAGTAACT 59.906 38.462 6.70 0.00 0.00 2.24
614 615 7.280652 TGTCACGCATACACATACTAGTAACTA 59.719 37.037 6.70 0.00 0.00 2.24
615 616 8.124823 GTCACGCATACACATACTAGTAACTAA 58.875 37.037 6.70 0.00 0.00 2.24
616 617 8.676401 TCACGCATACACATACTAGTAACTAAA 58.324 33.333 6.70 0.00 0.00 1.85
617 618 9.459640 CACGCATACACATACTAGTAACTAAAT 57.540 33.333 6.70 0.00 0.00 1.40
644 645 1.312815 GGCAGGAATGAGTGTATGCC 58.687 55.000 0.00 0.00 45.61 4.40
680 681 0.673644 AGCACGTTGGAGAATTCCCG 60.674 55.000 0.65 0.05 43.33 5.14
687 688 1.195115 TGGAGAATTCCCGAGGACAG 58.805 55.000 0.65 0.00 43.33 3.51
692 693 3.676093 AGAATTCCCGAGGACAGTTTTC 58.324 45.455 0.65 0.00 0.00 2.29
693 694 3.328050 AGAATTCCCGAGGACAGTTTTCT 59.672 43.478 0.65 0.00 0.00 2.52
694 695 2.833631 TTCCCGAGGACAGTTTTCTC 57.166 50.000 0.00 0.00 0.00 2.87
697 698 2.143925 CCCGAGGACAGTTTTCTCAAC 58.856 52.381 0.00 0.00 0.00 3.18
698 699 1.792949 CCGAGGACAGTTTTCTCAACG 59.207 52.381 0.00 0.00 0.00 4.10
723 724 6.994421 AAACAAATAAATCCCAAGGACAGT 57.006 33.333 0.00 0.00 32.98 3.55
759 766 4.649705 TCCGTCTCCCCAGCCCAA 62.650 66.667 0.00 0.00 0.00 4.12
960 1019 5.063880 CCCGAGGAAAGAAAGAAAGAAGAA 58.936 41.667 0.00 0.00 0.00 2.52
1470 1555 2.668550 TGTCTGCTGCTGCTGCTG 60.669 61.111 27.67 26.32 40.48 4.41
1534 1619 3.622060 ATCGGGTCAAACGGGGCAG 62.622 63.158 0.00 0.00 0.00 4.85
1586 1675 0.039074 CCGCTCGAGGATACATGGAC 60.039 60.000 15.58 0.00 41.41 4.02
1592 1681 1.000283 CGAGGATACATGGACTCCAGC 60.000 57.143 3.62 4.24 36.75 4.85
1593 1682 1.000283 GAGGATACATGGACTCCAGCG 60.000 57.143 3.62 0.00 36.75 5.18
1617 1706 3.596362 CCCCCTGGATTTTGACCTC 57.404 57.895 0.00 0.00 0.00 3.85
1651 1740 1.651737 TAGGTGCTGTGAAAGGGCTA 58.348 50.000 0.00 0.00 0.00 3.93
1703 1792 7.746929 AGCTGTCTGATCTTTTTAAAATCTCG 58.253 34.615 0.55 0.00 0.00 4.04
1720 1809 0.034198 TCGGTCACCTCGAATTGCAA 59.966 50.000 0.00 0.00 33.42 4.08
1741 1830 5.409826 GCAAAGTATTATCGAGCCTAAGCAT 59.590 40.000 0.00 0.00 43.56 3.79
1749 1845 3.288092 TCGAGCCTAAGCATTCTAGTCA 58.712 45.455 0.00 0.00 43.56 3.41
1762 1858 5.335897 GCATTCTAGTCAGGAAAATTGTGCA 60.336 40.000 0.00 0.00 0.00 4.57
1767 1863 7.370383 TCTAGTCAGGAAAATTGTGCAATTTC 58.630 34.615 19.25 13.65 46.76 2.17
1768 1864 5.916318 AGTCAGGAAAATTGTGCAATTTCA 58.084 33.333 19.25 3.76 46.76 2.69
1777 1873 7.551035 AAATTGTGCAATTTCAGCAAAACTA 57.449 28.000 14.88 0.00 44.98 2.24
1778 1874 5.964887 TTGTGCAATTTCAGCAAAACTAC 57.035 34.783 0.00 0.00 44.64 2.73
1788 1884 3.369546 AGCAAAACTACGCTGCAATTT 57.630 38.095 0.00 0.00 38.58 1.82
1791 1887 3.245048 GCAAAACTACGCTGCAATTTGTT 59.755 39.130 0.00 0.00 36.09 2.83
1792 1888 4.606012 GCAAAACTACGCTGCAATTTGTTC 60.606 41.667 0.00 0.00 36.09 3.18
1796 1892 2.693797 ACGCTGCAATTTGTTCTCTG 57.306 45.000 0.00 0.00 0.00 3.35
1804 1902 6.571150 GCTGCAATTTGTTCTCTGTTCCTTAT 60.571 38.462 0.00 0.00 0.00 1.73
1815 1913 6.796426 TCTCTGTTCCTTATTACATCGAGTG 58.204 40.000 0.00 0.00 0.00 3.51
1820 1918 6.070995 TGTTCCTTATTACATCGAGTGAGGTT 60.071 38.462 0.00 0.00 40.17 3.50
1827 1925 1.482182 CATCGAGTGAGGTTGGGATGA 59.518 52.381 0.00 0.00 34.65 2.92
1835 1933 4.909695 AGTGAGGTTGGGATGATGATGATA 59.090 41.667 0.00 0.00 0.00 2.15
1836 1934 5.550796 AGTGAGGTTGGGATGATGATGATAT 59.449 40.000 0.00 0.00 0.00 1.63
1838 1936 6.150641 GTGAGGTTGGGATGATGATGATATTG 59.849 42.308 0.00 0.00 0.00 1.90
1839 1937 6.044637 TGAGGTTGGGATGATGATGATATTGA 59.955 38.462 0.00 0.00 0.00 2.57
1840 1938 7.040913 AGGTTGGGATGATGATGATATTGAT 57.959 36.000 0.00 0.00 0.00 2.57
1841 1939 7.117397 AGGTTGGGATGATGATGATATTGATC 58.883 38.462 0.00 0.00 0.00 2.92
1842 1940 6.320672 GGTTGGGATGATGATGATATTGATCC 59.679 42.308 0.00 0.00 0.00 3.36
1843 1941 6.903340 TGGGATGATGATGATATTGATCCT 57.097 37.500 0.00 0.00 0.00 3.24
1844 1942 6.659824 TGGGATGATGATGATATTGATCCTG 58.340 40.000 0.00 0.00 0.00 3.86
1845 1943 6.445786 TGGGATGATGATGATATTGATCCTGA 59.554 38.462 0.00 0.00 0.00 3.86
1846 1944 6.993308 GGGATGATGATGATATTGATCCTGAG 59.007 42.308 0.00 0.00 0.00 3.35
1847 1945 6.993308 GGATGATGATGATATTGATCCTGAGG 59.007 42.308 0.00 0.00 0.00 3.86
1848 1946 5.742063 TGATGATGATATTGATCCTGAGGC 58.258 41.667 0.00 0.00 0.00 4.70
1849 1947 5.249852 TGATGATGATATTGATCCTGAGGCA 59.750 40.000 0.00 0.00 0.00 4.75
1850 1948 5.571791 TGATGATATTGATCCTGAGGCAA 57.428 39.130 0.00 0.00 0.00 4.52
1851 1949 5.311265 TGATGATATTGATCCTGAGGCAAC 58.689 41.667 0.00 0.00 0.00 4.17
1867 1965 3.944087 GGCAACTTTGGAGTAGATGACT 58.056 45.455 0.00 0.00 42.90 3.41
1868 1966 4.327680 GGCAACTTTGGAGTAGATGACTT 58.672 43.478 0.00 0.00 39.06 3.01
1869 1967 4.393371 GGCAACTTTGGAGTAGATGACTTC 59.607 45.833 0.00 0.00 39.06 3.01
1870 1968 5.241662 GCAACTTTGGAGTAGATGACTTCT 58.758 41.667 0.00 0.00 39.06 2.85
1871 1969 6.398918 GCAACTTTGGAGTAGATGACTTCTA 58.601 40.000 0.00 0.00 39.06 2.10
1892 1990 6.688578 TCTACTGTTTAAGCTAGGTTGTCTG 58.311 40.000 17.34 12.24 0.00 3.51
1914 2013 2.876079 GCTTGGCCACCTGGTATATAGC 60.876 54.545 3.88 3.43 37.57 2.97
1916 2015 0.618981 GGCCACCTGGTATATAGCCC 59.381 60.000 9.38 0.00 37.57 5.19
1918 2017 1.003233 GCCACCTGGTATATAGCCCAC 59.997 57.143 9.38 0.00 37.57 4.61
1922 2021 1.825474 CCTGGTATATAGCCCACCTCG 59.175 57.143 9.38 0.00 33.28 4.63
1930 2029 0.535335 TAGCCCACCTCGTTGCTAAG 59.465 55.000 0.00 0.00 33.64 2.18
1945 2044 3.855689 GCTAAGAGCAATCTGCCAAAA 57.144 42.857 0.00 0.00 46.52 2.44
1946 2045 4.382345 GCTAAGAGCAATCTGCCAAAAT 57.618 40.909 0.00 0.00 46.52 1.82
1950 2049 1.137675 GAGCAATCTGCCAAAATCCCC 59.862 52.381 0.00 0.00 46.52 4.81
1951 2050 0.903942 GCAATCTGCCAAAATCCCCA 59.096 50.000 0.00 0.00 37.42 4.96
1952 2051 1.278699 GCAATCTGCCAAAATCCCCAA 59.721 47.619 0.00 0.00 37.42 4.12
1953 2052 2.678769 GCAATCTGCCAAAATCCCCAAG 60.679 50.000 0.00 0.00 37.42 3.61
1964 2063 5.493809 CAAAATCCCCAAGAGCAAATTGAT 58.506 37.500 0.00 0.00 0.00 2.57
1968 2067 3.765511 TCCCCAAGAGCAAATTGATTCTG 59.234 43.478 0.00 0.00 0.00 3.02
1975 2074 8.461222 CCAAGAGCAAATTGATTCTGTTATGTA 58.539 33.333 0.00 0.00 0.00 2.29
2011 2110 9.554395 TCTTTTCACATTAAGTATCAACTGACA 57.446 29.630 0.00 0.00 35.62 3.58
2046 2146 2.965831 ACCTGTAGTCTTTGTCTCTGCA 59.034 45.455 0.00 0.00 0.00 4.41
2057 2157 3.170791 TGTCTCTGCAGCTTACTATGC 57.829 47.619 9.47 0.00 42.86 3.14
2073 2173 3.976654 ACTATGCCCCTCTTGTGATATGT 59.023 43.478 0.00 0.00 0.00 2.29
2078 2178 4.040829 TGCCCCTCTTGTGATATGTATCAG 59.959 45.833 3.05 0.00 42.84 2.90
2079 2179 4.573900 CCCCTCTTGTGATATGTATCAGC 58.426 47.826 3.05 0.80 42.84 4.26
2101 2201 4.690280 GCTAGCAATCTCCTTATGAGCTTC 59.310 45.833 10.63 0.00 41.18 3.86
2282 2382 4.521146 CCTAGTGCAGATCAAATCAACCT 58.479 43.478 0.00 0.00 0.00 3.50
2283 2383 5.396772 CCCTAGTGCAGATCAAATCAACCTA 60.397 44.000 0.00 0.00 0.00 3.08
2346 2449 6.638063 CAGTTGTTTTGTGAACACCATAGATG 59.362 38.462 2.46 0.00 0.00 2.90
2347 2450 6.545666 AGTTGTTTTGTGAACACCATAGATGA 59.454 34.615 2.46 0.00 0.00 2.92
2349 2452 7.340122 TGTTTTGTGAACACCATAGATGAAA 57.660 32.000 2.46 0.00 0.00 2.69
2351 2454 7.866898 TGTTTTGTGAACACCATAGATGAAATG 59.133 33.333 2.46 0.00 0.00 2.32
2353 2456 7.523293 TTGTGAACACCATAGATGAAATGTT 57.477 32.000 2.46 6.51 33.73 2.71
2354 2457 7.144722 TGTGAACACCATAGATGAAATGTTC 57.855 36.000 18.03 18.03 40.86 3.18
2355 2458 6.942005 TGTGAACACCATAGATGAAATGTTCT 59.058 34.615 21.66 0.00 40.96 3.01
2356 2459 8.100164 TGTGAACACCATAGATGAAATGTTCTA 58.900 33.333 21.66 14.35 40.96 2.10
2357 2460 8.607459 GTGAACACCATAGATGAAATGTTCTAG 58.393 37.037 21.66 0.00 40.96 2.43
2359 2462 9.383519 GAACACCATAGATGAAATGTTCTAGAA 57.616 33.333 17.80 0.00 39.34 2.10
2360 2463 8.954950 ACACCATAGATGAAATGTTCTAGAAG 57.045 34.615 5.12 0.00 0.00 2.85
2443 2565 3.141398 AGTAAACATGCAGTGGTCTGTG 58.859 45.455 0.00 0.00 43.05 3.66
2445 2567 0.473755 AACATGCAGTGGTCTGTGGA 59.526 50.000 0.00 0.00 43.05 4.02
2471 2594 7.920682 AGTACTTGAACTGGCATTTTGTTTAAG 59.079 33.333 15.61 15.61 40.63 1.85
2500 2623 2.854963 TGTCAGACTTGCATTGCTTCT 58.145 42.857 10.49 6.23 0.00 2.85
2670 2793 6.757010 AGACTACAACTATGCAAGGAAATACG 59.243 38.462 0.00 0.00 0.00 3.06
2768 2891 7.016268 AGTCCTCTCCTATTAACTTTTGACACA 59.984 37.037 0.00 0.00 0.00 3.72
2817 2940 4.998671 TTGGTTCATGAACTTCTTTGCA 57.001 36.364 31.81 19.37 40.94 4.08
2818 2941 4.572985 TGGTTCATGAACTTCTTTGCAG 57.427 40.909 31.81 0.00 40.94 4.41
2822 2945 3.968649 TCATGAACTTCTTTGCAGCAAC 58.031 40.909 7.54 0.00 0.00 4.17
2849 2972 4.193240 ACACCCACCATAAACTTTTCCT 57.807 40.909 0.00 0.00 0.00 3.36
2850 2973 5.327737 ACACCCACCATAAACTTTTCCTA 57.672 39.130 0.00 0.00 0.00 2.94
2859 2983 8.028938 CACCATAAACTTTTCCTAATTGTCCTG 58.971 37.037 0.00 0.00 0.00 3.86
2895 3019 4.249661 TGTATACGAATTGACAGCTGCAA 58.750 39.130 20.64 20.64 0.00 4.08
2896 3020 4.693095 TGTATACGAATTGACAGCTGCAAA 59.307 37.500 21.71 14.12 0.00 3.68
2902 3026 4.209703 CGAATTGACAGCTGCAAATTTGTT 59.790 37.500 21.62 13.94 0.00 2.83
2905 3035 3.188492 TGACAGCTGCAAATTTGTTGTG 58.812 40.909 15.27 13.32 0.00 3.33
2907 3037 4.053295 GACAGCTGCAAATTTGTTGTGAT 58.947 39.130 15.27 3.87 0.00 3.06
2914 3044 7.227116 AGCTGCAAATTTGTTGTGATATTTGTT 59.773 29.630 19.03 0.00 39.18 2.83
2919 3049 9.852481 CAAATTTGTTGTGATATTTGTTCAGTG 57.148 29.630 10.15 0.00 34.74 3.66
2934 3064 3.758755 TCAGTGAGCACTTTCTGACAT 57.241 42.857 0.00 0.00 40.20 3.06
2939 3069 3.058639 GTGAGCACTTTCTGACATGGTTC 60.059 47.826 0.00 0.00 0.00 3.62
2944 3074 6.006449 AGCACTTTCTGACATGGTTCTATTT 58.994 36.000 0.00 0.00 0.00 1.40
2960 3090 8.271458 TGGTTCTATTTAGGATTAGTGAATGCA 58.729 33.333 0.00 0.00 35.92 3.96
2970 3100 5.278957 GGATTAGTGAATGCAACTTTGTGGT 60.279 40.000 0.00 0.00 33.76 4.16
2971 3101 5.590530 TTAGTGAATGCAACTTTGTGGTT 57.409 34.783 0.00 0.00 0.00 3.67
2972 3102 6.701145 TTAGTGAATGCAACTTTGTGGTTA 57.299 33.333 0.00 0.00 0.00 2.85
2973 3103 4.932146 AGTGAATGCAACTTTGTGGTTAC 58.068 39.130 0.00 0.00 0.00 2.50
2974 3104 4.644685 AGTGAATGCAACTTTGTGGTTACT 59.355 37.500 0.00 0.00 0.00 2.24
2975 3105 4.739716 GTGAATGCAACTTTGTGGTTACTG 59.260 41.667 0.00 0.00 0.00 2.74
2980 3110 4.334203 TGCAACTTTGTGGTTACTGTAGTG 59.666 41.667 0.00 0.00 0.00 2.74
2981 3111 4.788521 GCAACTTTGTGGTTACTGTAGTGC 60.789 45.833 0.00 0.00 0.00 4.40
2995 3125 3.013219 TGTAGTGCTTTGAGTGCAACAA 58.987 40.909 0.00 0.00 42.41 2.83
3014 3150 3.583086 ACAAAGACTGGCCTGTATGTACT 59.417 43.478 16.13 5.18 0.00 2.73
3054 3190 5.241285 TCAATCAATAGCAAAGTGAGCAACA 59.759 36.000 0.00 0.00 0.00 3.33
3057 3193 6.816134 TCAATAGCAAAGTGAGCAACATAA 57.184 33.333 0.00 0.00 0.00 1.90
3069 3205 8.565896 AGTGAGCAACATAAATTCTGACATAA 57.434 30.769 0.00 0.00 0.00 1.90
3070 3206 9.013229 AGTGAGCAACATAAATTCTGACATAAA 57.987 29.630 0.00 0.00 0.00 1.40
3107 3243 3.648339 TCAAAGACTGGAAATTGCTGC 57.352 42.857 0.00 0.00 0.00 5.25
3124 3260 5.996669 TGCTGCATGTGAATAAGTAGATG 57.003 39.130 0.00 0.00 0.00 2.90
3127 3263 5.525012 GCTGCATGTGAATAAGTAGATGACA 59.475 40.000 0.00 0.00 0.00 3.58
3153 3312 8.361889 ACTGATATGTTCTGAATCATCTCTCAG 58.638 37.037 20.33 20.33 40.42 3.35
3188 3347 5.755813 CCATGTGCTATATGAACTTGAAGC 58.244 41.667 0.00 0.00 32.68 3.86
3195 3354 7.595502 GTGCTATATGAACTTGAAGCGTAGTAT 59.404 37.037 0.00 0.00 32.67 2.12
3269 3429 2.923605 GCTTACACGACCTAACAGCGAA 60.924 50.000 0.00 0.00 0.00 4.70
3306 3466 2.284770 AGGGTGGCTACCTAAACCATT 58.715 47.619 19.72 0.00 46.66 3.16
3319 3479 6.174049 ACCTAAACCATTAGCTGTTCTCTTC 58.826 40.000 0.00 0.00 37.74 2.87
3345 3506 2.101415 GCTGCCTTTTCAACCTCTTGTT 59.899 45.455 0.00 0.00 37.80 2.83
3417 3579 0.249073 CCGCGTTGATACTCCTCCTG 60.249 60.000 4.92 0.00 0.00 3.86
3481 3643 1.073025 ACCTTGCCGACTTGCATCA 59.927 52.632 0.00 0.00 41.70 3.07
3488 3650 0.742281 CCGACTTGCATCAGGTGAGG 60.742 60.000 0.00 0.00 0.00 3.86
3489 3651 0.742281 CGACTTGCATCAGGTGAGGG 60.742 60.000 0.00 0.00 0.00 4.30
3515 3678 2.749621 CAGGGGCATATAAATTCGCCTC 59.250 50.000 0.00 0.00 45.94 4.70
3534 3699 1.165907 CGTGGTGTGCTTGTGTCCAT 61.166 55.000 0.00 0.00 0.00 3.41
3535 3700 0.311790 GTGGTGTGCTTGTGTCCATG 59.688 55.000 0.00 0.00 0.00 3.66
3541 3706 1.080298 GCTTGTGTCCATGGCTTGC 60.080 57.895 6.96 1.61 0.00 4.01
3576 3741 4.299547 AGAGCGACCGTTGCAGCA 62.300 61.111 13.37 0.00 33.85 4.41
3689 3860 2.290577 GCCTTGGATTGTGAAGACTCCT 60.291 50.000 0.00 0.00 0.00 3.69
3836 4020 7.015292 GGTCCAGTCCAATAAGTATCATCTGTA 59.985 40.741 0.00 0.00 0.00 2.74
3841 4025 6.647067 GTCCAATAAGTATCATCTGTACAGGC 59.353 42.308 22.48 6.68 0.00 4.85
3849 4033 2.831526 TCATCTGTACAGGCTGCAACTA 59.168 45.455 22.48 6.55 0.00 2.24
3854 4038 4.455533 TCTGTACAGGCTGCAACTATTTTG 59.544 41.667 22.48 2.26 0.00 2.44
3859 4044 4.099266 ACAGGCTGCAACTATTTTGTTTCA 59.901 37.500 15.89 0.00 0.00 2.69
3863 4048 3.971150 TGCAACTATTTTGTTTCACCCG 58.029 40.909 0.00 0.00 0.00 5.28
3894 4079 5.159209 GTCCTCTTCATTTGCATCTTTGTG 58.841 41.667 0.00 0.00 0.00 3.33
3927 4112 2.824041 CGCCGGGTGGATCAAAGG 60.824 66.667 2.18 0.00 37.49 3.11
3952 4137 5.865552 GGAATTTGCCATATTCGGATCATTG 59.134 40.000 0.00 0.00 33.73 2.82
3977 4162 1.146358 GCTTGACGCCGATCCTGTAC 61.146 60.000 0.00 0.00 0.00 2.90
3978 4163 0.527817 CTTGACGCCGATCCTGTACC 60.528 60.000 0.00 0.00 0.00 3.34
3979 4164 1.252215 TTGACGCCGATCCTGTACCA 61.252 55.000 0.00 0.00 0.00 3.25
3983 4168 1.146041 GCCGATCCTGTACCATGCA 59.854 57.895 0.00 0.00 0.00 3.96
3986 4171 2.549992 GCCGATCCTGTACCATGCAATA 60.550 50.000 0.00 0.00 0.00 1.90
4044 4231 4.320456 CTGCGCCCTGGACACACT 62.320 66.667 4.18 0.00 0.00 3.55
4045 4232 4.624364 TGCGCCCTGGACACACTG 62.624 66.667 4.18 0.00 0.00 3.66
4068 4283 8.844244 ACTGGCATCTATATTGAGTTTTTCATC 58.156 33.333 0.00 0.00 35.27 2.92
4076 4291 5.794687 ATTGAGTTTTTCATCGCATCGTA 57.205 34.783 0.00 0.00 35.27 3.43
4082 4297 6.378582 AGTTTTTCATCGCATCGTACAAATT 58.621 32.000 0.00 0.00 0.00 1.82
4128 4343 7.765360 GCTGCAATATGAGAGCTAGAGAAATAT 59.235 37.037 0.00 0.00 0.00 1.28
4205 4441 8.023706 GCAAATCCCCGCAAAAATAAAATAAAA 58.976 29.630 0.00 0.00 0.00 1.52
4210 4446 8.507249 TCCCCGCAAAAATAAAATAAAATTGTG 58.493 29.630 0.00 0.00 0.00 3.33
4213 4449 7.805071 CCGCAAAAATAAAATAAAATTGTGGCA 59.195 29.630 0.00 0.00 39.29 4.92
4216 4452 9.956720 CAAAAATAAAATAAAATTGTGGCACCA 57.043 25.926 16.26 4.06 0.00 4.17
4299 4535 2.019249 ACATGATCTGTTCCGCATTGG 58.981 47.619 0.00 0.00 32.90 3.16
4319 4555 3.043999 GCCCTCCCGGTACTGCAAT 62.044 63.158 0.00 0.00 0.00 3.56
4350 4586 5.009310 TGCAGCCAAATATTGACATGATCTC 59.991 40.000 0.00 0.00 0.00 2.75
4353 4589 5.699915 AGCCAAATATTGACATGATCTCGAG 59.300 40.000 5.93 5.93 0.00 4.04
4373 4609 6.447162 TCGAGTTCATATAGATGCACGAAAT 58.553 36.000 0.00 0.00 34.73 2.17
4391 4627 7.113965 GCACGAAATTCATAGAAAATAGGCATG 59.886 37.037 0.00 0.00 0.00 4.06
4392 4628 7.113965 CACGAAATTCATAGAAAATAGGCATGC 59.886 37.037 9.90 9.90 0.00 4.06
4394 4630 6.982160 AATTCATAGAAAATAGGCATGCCA 57.018 33.333 37.18 23.40 38.92 4.92
4437 4674 4.821414 ATGCGCAATCAAACAAAATACG 57.179 36.364 17.11 0.00 0.00 3.06
4454 4691 4.864916 ATACGACATGATCAAGCACAAC 57.135 40.909 0.00 0.00 0.00 3.32
4484 4721 6.769134 TGATCAGATCAAGCAACATCATTT 57.231 33.333 10.93 0.00 36.11 2.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.492102 ACTTCTGGCGGCATATGTTAT 57.508 42.857 13.85 0.00 0.00 1.89
1 2 3.275617 AACTTCTGGCGGCATATGTTA 57.724 42.857 21.19 0.00 0.00 2.41
2 3 2.128771 AACTTCTGGCGGCATATGTT 57.871 45.000 13.85 16.74 0.00 2.71
3 4 3.275617 TTAACTTCTGGCGGCATATGT 57.724 42.857 13.85 11.21 0.00 2.29
4 5 5.163723 CCATATTAACTTCTGGCGGCATATG 60.164 44.000 13.85 14.31 0.00 1.78
5 6 4.943705 CCATATTAACTTCTGGCGGCATAT 59.056 41.667 13.85 1.44 0.00 1.78
6 7 4.323417 CCATATTAACTTCTGGCGGCATA 58.677 43.478 13.85 1.26 0.00 3.14
7 8 3.149196 CCATATTAACTTCTGGCGGCAT 58.851 45.455 13.85 0.00 0.00 4.40
8 9 2.571212 CCATATTAACTTCTGGCGGCA 58.429 47.619 12.58 12.58 0.00 5.69
9 10 1.880027 CCCATATTAACTTCTGGCGGC 59.120 52.381 0.00 0.00 0.00 6.53
10 11 3.485463 TCCCATATTAACTTCTGGCGG 57.515 47.619 0.00 0.00 0.00 6.13
11 12 7.012894 TGTTATTTCCCATATTAACTTCTGGCG 59.987 37.037 0.00 0.00 0.00 5.69
12 13 8.232913 TGTTATTTCCCATATTAACTTCTGGC 57.767 34.615 0.00 0.00 0.00 4.85
13 14 9.627123 TCTGTTATTTCCCATATTAACTTCTGG 57.373 33.333 0.00 0.00 0.00 3.86
25 26 8.416329 GCTCAACAATATTCTGTTATTTCCCAT 58.584 33.333 0.00 0.00 37.43 4.00
26 27 7.395772 TGCTCAACAATATTCTGTTATTTCCCA 59.604 33.333 0.00 0.00 37.43 4.37
27 28 7.771183 TGCTCAACAATATTCTGTTATTTCCC 58.229 34.615 0.00 0.00 37.43 3.97
28 29 7.917505 CCTGCTCAACAATATTCTGTTATTTCC 59.082 37.037 0.00 0.00 37.43 3.13
29 30 7.917505 CCCTGCTCAACAATATTCTGTTATTTC 59.082 37.037 0.00 0.00 37.43 2.17
30 31 7.615365 TCCCTGCTCAACAATATTCTGTTATTT 59.385 33.333 0.00 0.00 37.43 1.40
31 32 7.118723 TCCCTGCTCAACAATATTCTGTTATT 58.881 34.615 0.00 0.00 37.43 1.40
32 33 6.662755 TCCCTGCTCAACAATATTCTGTTAT 58.337 36.000 0.00 0.00 37.43 1.89
33 34 6.061022 TCCCTGCTCAACAATATTCTGTTA 57.939 37.500 0.00 0.00 37.43 2.41
34 35 4.922206 TCCCTGCTCAACAATATTCTGTT 58.078 39.130 0.00 0.00 40.17 3.16
35 36 4.574674 TCCCTGCTCAACAATATTCTGT 57.425 40.909 0.00 0.00 0.00 3.41
36 37 5.359009 ACAATCCCTGCTCAACAATATTCTG 59.641 40.000 0.00 0.00 0.00 3.02
37 38 5.359009 CACAATCCCTGCTCAACAATATTCT 59.641 40.000 0.00 0.00 0.00 2.40
38 39 5.357878 TCACAATCCCTGCTCAACAATATTC 59.642 40.000 0.00 0.00 0.00 1.75
39 40 5.263599 TCACAATCCCTGCTCAACAATATT 58.736 37.500 0.00 0.00 0.00 1.28
40 41 4.858850 TCACAATCCCTGCTCAACAATAT 58.141 39.130 0.00 0.00 0.00 1.28
41 42 4.299586 TCACAATCCCTGCTCAACAATA 57.700 40.909 0.00 0.00 0.00 1.90
42 43 3.159213 TCACAATCCCTGCTCAACAAT 57.841 42.857 0.00 0.00 0.00 2.71
43 44 2.655090 TCACAATCCCTGCTCAACAA 57.345 45.000 0.00 0.00 0.00 2.83
44 45 2.040145 TCATCACAATCCCTGCTCAACA 59.960 45.455 0.00 0.00 0.00 3.33
45 46 2.715046 TCATCACAATCCCTGCTCAAC 58.285 47.619 0.00 0.00 0.00 3.18
46 47 3.438216 TTCATCACAATCCCTGCTCAA 57.562 42.857 0.00 0.00 0.00 3.02
47 48 3.438216 TTTCATCACAATCCCTGCTCA 57.562 42.857 0.00 0.00 0.00 4.26
48 49 4.996788 ATTTTCATCACAATCCCTGCTC 57.003 40.909 0.00 0.00 0.00 4.26
49 50 4.081309 CCAATTTTCATCACAATCCCTGCT 60.081 41.667 0.00 0.00 0.00 4.24
50 51 4.186159 CCAATTTTCATCACAATCCCTGC 58.814 43.478 0.00 0.00 0.00 4.85
51 52 4.223477 ACCCAATTTTCATCACAATCCCTG 59.777 41.667 0.00 0.00 0.00 4.45
52 53 4.428570 ACCCAATTTTCATCACAATCCCT 58.571 39.130 0.00 0.00 0.00 4.20
53 54 4.824479 ACCCAATTTTCATCACAATCCC 57.176 40.909 0.00 0.00 0.00 3.85
54 55 6.070824 AGGTTACCCAATTTTCATCACAATCC 60.071 38.462 0.00 0.00 0.00 3.01
55 56 6.935167 AGGTTACCCAATTTTCATCACAATC 58.065 36.000 0.00 0.00 0.00 2.67
56 57 6.350110 CGAGGTTACCCAATTTTCATCACAAT 60.350 38.462 0.00 0.00 0.00 2.71
57 58 5.048364 CGAGGTTACCCAATTTTCATCACAA 60.048 40.000 0.00 0.00 0.00 3.33
58 59 4.457603 CGAGGTTACCCAATTTTCATCACA 59.542 41.667 0.00 0.00 0.00 3.58
59 60 4.698304 TCGAGGTTACCCAATTTTCATCAC 59.302 41.667 0.00 0.00 0.00 3.06
60 61 4.912586 TCGAGGTTACCCAATTTTCATCA 58.087 39.130 0.00 0.00 0.00 3.07
61 62 5.890424 TTCGAGGTTACCCAATTTTCATC 57.110 39.130 0.00 0.00 0.00 2.92
62 63 6.630071 CAATTCGAGGTTACCCAATTTTCAT 58.370 36.000 0.00 0.00 0.00 2.57
63 64 5.565834 GCAATTCGAGGTTACCCAATTTTCA 60.566 40.000 0.00 0.00 0.00 2.69
64 65 4.862574 GCAATTCGAGGTTACCCAATTTTC 59.137 41.667 0.00 0.00 0.00 2.29
65 66 4.282195 TGCAATTCGAGGTTACCCAATTTT 59.718 37.500 0.00 0.00 0.00 1.82
66 67 3.829601 TGCAATTCGAGGTTACCCAATTT 59.170 39.130 0.00 0.00 0.00 1.82
67 68 3.426615 TGCAATTCGAGGTTACCCAATT 58.573 40.909 0.00 0.00 0.00 2.32
68 69 3.080300 TGCAATTCGAGGTTACCCAAT 57.920 42.857 0.00 0.00 0.00 3.16
69 70 2.554893 GTTGCAATTCGAGGTTACCCAA 59.445 45.455 0.59 0.00 0.00 4.12
70 71 2.156098 GTTGCAATTCGAGGTTACCCA 58.844 47.619 0.59 0.00 0.00 4.51
71 72 1.471287 GGTTGCAATTCGAGGTTACCC 59.529 52.381 0.59 0.00 0.00 3.69
72 73 2.156098 TGGTTGCAATTCGAGGTTACC 58.844 47.619 0.59 0.00 0.00 2.85
73 74 3.500680 TCTTGGTTGCAATTCGAGGTTAC 59.499 43.478 0.59 0.00 0.00 2.50
74 75 3.745799 TCTTGGTTGCAATTCGAGGTTA 58.254 40.909 0.59 0.00 0.00 2.85
75 76 2.582052 TCTTGGTTGCAATTCGAGGTT 58.418 42.857 0.59 0.00 0.00 3.50
76 77 2.270352 TCTTGGTTGCAATTCGAGGT 57.730 45.000 0.59 0.00 0.00 3.85
77 78 4.790766 GCATATCTTGGTTGCAATTCGAGG 60.791 45.833 0.59 0.00 36.40 4.63
78 79 4.201940 TGCATATCTTGGTTGCAATTCGAG 60.202 41.667 0.59 7.96 42.95 4.04
79 80 3.693578 TGCATATCTTGGTTGCAATTCGA 59.306 39.130 0.59 0.00 42.95 3.71
80 81 4.031418 TGCATATCTTGGTTGCAATTCG 57.969 40.909 0.59 0.00 42.95 3.34
86 87 4.374843 TGTTGATGCATATCTTGGTTGC 57.625 40.909 0.00 0.00 36.91 4.17
426 427 1.605232 GGGTGATTGGAACGTCGTTTT 59.395 47.619 12.67 0.00 0.00 2.43
427 428 1.232119 GGGTGATTGGAACGTCGTTT 58.768 50.000 12.67 0.00 0.00 3.60
428 429 0.947180 CGGGTGATTGGAACGTCGTT 60.947 55.000 11.08 11.08 0.00 3.85
429 430 1.373748 CGGGTGATTGGAACGTCGT 60.374 57.895 0.00 0.00 0.00 4.34
430 431 2.098233 CCGGGTGATTGGAACGTCG 61.098 63.158 0.00 0.00 0.00 5.12
431 432 0.604511 AACCGGGTGATTGGAACGTC 60.605 55.000 6.32 0.00 0.00 4.34
432 433 0.604511 GAACCGGGTGATTGGAACGT 60.605 55.000 6.32 0.00 0.00 3.99
433 434 1.632046 CGAACCGGGTGATTGGAACG 61.632 60.000 6.32 0.00 0.00 3.95
434 435 1.303091 CCGAACCGGGTGATTGGAAC 61.303 60.000 6.32 0.00 44.15 3.62
435 436 1.003112 CCGAACCGGGTGATTGGAA 60.003 57.895 6.32 0.00 44.15 3.53
436 437 2.666207 CCGAACCGGGTGATTGGA 59.334 61.111 6.32 0.00 44.15 3.53
453 454 2.094906 GGTAAAAGTTTCGGATGGGCAC 60.095 50.000 0.00 0.00 0.00 5.01
454 455 2.164338 GGTAAAAGTTTCGGATGGGCA 58.836 47.619 0.00 0.00 0.00 5.36
455 456 1.131693 CGGTAAAAGTTTCGGATGGGC 59.868 52.381 0.00 0.00 0.00 5.36
456 457 1.741145 CCGGTAAAAGTTTCGGATGGG 59.259 52.381 8.18 0.00 44.69 4.00
457 458 1.131693 GCCGGTAAAAGTTTCGGATGG 59.868 52.381 16.11 4.45 44.69 3.51
458 459 2.081462 AGCCGGTAAAAGTTTCGGATG 58.919 47.619 16.11 0.00 44.69 3.51
459 460 2.081462 CAGCCGGTAAAAGTTTCGGAT 58.919 47.619 16.11 8.49 44.69 4.18
460 461 1.515081 CAGCCGGTAAAAGTTTCGGA 58.485 50.000 16.11 0.00 44.69 4.55
461 462 0.519961 CCAGCCGGTAAAAGTTTCGG 59.480 55.000 1.90 9.30 44.70 4.30
462 463 1.232119 ACCAGCCGGTAAAAGTTTCG 58.768 50.000 1.90 0.00 46.71 3.46
473 474 0.958091 TTTTCATTGTGACCAGCCGG 59.042 50.000 0.00 0.00 38.77 6.13
474 475 2.791383 TTTTTCATTGTGACCAGCCG 57.209 45.000 0.00 0.00 0.00 5.52
475 476 4.021544 TGGTATTTTTCATTGTGACCAGCC 60.022 41.667 0.00 0.00 31.94 4.85
476 477 5.132897 TGGTATTTTTCATTGTGACCAGC 57.867 39.130 0.00 0.00 31.94 4.85
520 521 8.159447 TGTGGAGGTAGTATAATACGACAGTAT 58.841 37.037 4.39 0.00 44.88 2.12
521 522 7.508687 TGTGGAGGTAGTATAATACGACAGTA 58.491 38.462 4.39 0.00 36.23 2.74
522 523 6.359804 TGTGGAGGTAGTATAATACGACAGT 58.640 40.000 4.39 0.00 36.23 3.55
523 524 6.872628 TGTGGAGGTAGTATAATACGACAG 57.127 41.667 4.39 0.00 36.23 3.51
524 525 7.040201 GGATTGTGGAGGTAGTATAATACGACA 60.040 40.741 4.39 2.66 36.23 4.35
525 526 7.040201 TGGATTGTGGAGGTAGTATAATACGAC 60.040 40.741 4.39 1.58 34.15 4.34
526 527 7.005902 TGGATTGTGGAGGTAGTATAATACGA 58.994 38.462 4.39 0.00 0.00 3.43
527 528 7.088905 GTGGATTGTGGAGGTAGTATAATACG 58.911 42.308 4.39 0.00 0.00 3.06
528 529 7.959175 TGTGGATTGTGGAGGTAGTATAATAC 58.041 38.462 1.66 1.66 0.00 1.89
529 530 8.555896 TTGTGGATTGTGGAGGTAGTATAATA 57.444 34.615 0.00 0.00 0.00 0.98
530 531 7.446106 TTGTGGATTGTGGAGGTAGTATAAT 57.554 36.000 0.00 0.00 0.00 1.28
531 532 6.877668 TTGTGGATTGTGGAGGTAGTATAA 57.122 37.500 0.00 0.00 0.00 0.98
532 533 8.736097 ATATTGTGGATTGTGGAGGTAGTATA 57.264 34.615 0.00 0.00 0.00 1.47
533 534 5.975988 ATTGTGGATTGTGGAGGTAGTAT 57.024 39.130 0.00 0.00 0.00 2.12
534 535 6.613679 TGATATTGTGGATTGTGGAGGTAGTA 59.386 38.462 0.00 0.00 0.00 1.82
535 536 5.428457 TGATATTGTGGATTGTGGAGGTAGT 59.572 40.000 0.00 0.00 0.00 2.73
536 537 5.928976 TGATATTGTGGATTGTGGAGGTAG 58.071 41.667 0.00 0.00 0.00 3.18
537 538 5.966853 TGATATTGTGGATTGTGGAGGTA 57.033 39.130 0.00 0.00 0.00 3.08
538 539 4.860802 TGATATTGTGGATTGTGGAGGT 57.139 40.909 0.00 0.00 0.00 3.85
539 540 6.537355 ACTATGATATTGTGGATTGTGGAGG 58.463 40.000 0.00 0.00 0.00 4.30
540 541 8.347771 CAAACTATGATATTGTGGATTGTGGAG 58.652 37.037 0.00 0.00 0.00 3.86
541 542 7.285172 CCAAACTATGATATTGTGGATTGTGGA 59.715 37.037 0.00 0.00 0.00 4.02
542 543 7.068593 ACCAAACTATGATATTGTGGATTGTGG 59.931 37.037 6.07 0.00 0.00 4.17
543 544 7.999679 ACCAAACTATGATATTGTGGATTGTG 58.000 34.615 6.07 0.00 0.00 3.33
544 545 9.866655 ATACCAAACTATGATATTGTGGATTGT 57.133 29.630 6.07 0.00 0.00 2.71
553 554 9.672673 GGCACTATGATACCAAACTATGATATT 57.327 33.333 0.00 0.00 0.00 1.28
554 555 9.051259 AGGCACTATGATACCAAACTATGATAT 57.949 33.333 0.00 0.00 36.02 1.63
555 556 8.435931 AGGCACTATGATACCAAACTATGATA 57.564 34.615 0.00 0.00 36.02 2.15
556 557 7.321717 AGGCACTATGATACCAAACTATGAT 57.678 36.000 0.00 0.00 36.02 2.45
557 558 6.747414 AGGCACTATGATACCAAACTATGA 57.253 37.500 0.00 0.00 36.02 2.15
558 559 9.507329 AATTAGGCACTATGATACCAAACTATG 57.493 33.333 0.00 0.00 42.38 2.23
559 560 9.726438 GAATTAGGCACTATGATACCAAACTAT 57.274 33.333 0.00 0.00 42.38 2.12
560 561 8.710239 TGAATTAGGCACTATGATACCAAACTA 58.290 33.333 0.00 0.00 42.38 2.24
561 562 7.573710 TGAATTAGGCACTATGATACCAAACT 58.426 34.615 0.00 0.00 42.38 2.66
562 563 7.801716 TGAATTAGGCACTATGATACCAAAC 57.198 36.000 0.00 0.00 42.38 2.93
563 564 8.849168 CAATGAATTAGGCACTATGATACCAAA 58.151 33.333 0.00 0.00 42.38 3.28
564 565 7.998383 ACAATGAATTAGGCACTATGATACCAA 59.002 33.333 0.00 0.00 42.38 3.67
565 566 7.517320 ACAATGAATTAGGCACTATGATACCA 58.483 34.615 0.00 0.00 42.38 3.25
566 567 7.661437 TGACAATGAATTAGGCACTATGATACC 59.339 37.037 0.00 0.00 42.38 2.73
567 568 8.499162 GTGACAATGAATTAGGCACTATGATAC 58.501 37.037 0.00 0.00 42.38 2.24
568 569 7.384932 CGTGACAATGAATTAGGCACTATGATA 59.615 37.037 0.00 0.00 42.38 2.15
569 570 6.203530 CGTGACAATGAATTAGGCACTATGAT 59.796 38.462 0.00 0.00 42.38 2.45
570 571 5.523552 CGTGACAATGAATTAGGCACTATGA 59.476 40.000 0.00 0.00 42.38 2.15
571 572 5.741425 CGTGACAATGAATTAGGCACTATG 58.259 41.667 0.00 0.00 42.38 2.23
572 573 4.273480 GCGTGACAATGAATTAGGCACTAT 59.727 41.667 0.00 0.00 42.38 2.12
573 574 3.621268 GCGTGACAATGAATTAGGCACTA 59.379 43.478 0.00 0.00 41.75 2.74
574 575 2.420022 GCGTGACAATGAATTAGGCACT 59.580 45.455 0.00 0.00 46.37 4.40
575 576 2.161410 TGCGTGACAATGAATTAGGCAC 59.839 45.455 0.00 0.00 0.00 5.01
576 577 2.431454 TGCGTGACAATGAATTAGGCA 58.569 42.857 0.00 0.00 0.00 4.75
577 578 3.698029 ATGCGTGACAATGAATTAGGC 57.302 42.857 0.00 0.00 0.00 3.93
578 579 5.064579 TGTGTATGCGTGACAATGAATTAGG 59.935 40.000 0.00 0.00 0.00 2.69
579 580 6.105657 TGTGTATGCGTGACAATGAATTAG 57.894 37.500 0.00 0.00 0.00 1.73
580 581 6.676237 ATGTGTATGCGTGACAATGAATTA 57.324 33.333 0.00 0.00 0.00 1.40
581 582 5.565592 ATGTGTATGCGTGACAATGAATT 57.434 34.783 0.00 0.00 0.00 2.17
582 583 5.817296 AGTATGTGTATGCGTGACAATGAAT 59.183 36.000 0.00 0.00 0.00 2.57
583 584 5.175127 AGTATGTGTATGCGTGACAATGAA 58.825 37.500 0.00 0.00 0.00 2.57
584 585 4.754322 AGTATGTGTATGCGTGACAATGA 58.246 39.130 0.00 0.00 0.00 2.57
585 586 5.748630 ACTAGTATGTGTATGCGTGACAATG 59.251 40.000 0.00 0.00 0.00 2.82
586 587 5.902681 ACTAGTATGTGTATGCGTGACAAT 58.097 37.500 0.00 0.00 0.00 2.71
587 588 5.319140 ACTAGTATGTGTATGCGTGACAA 57.681 39.130 0.00 0.00 0.00 3.18
588 589 4.976224 ACTAGTATGTGTATGCGTGACA 57.024 40.909 0.00 0.00 0.00 3.58
589 590 6.493116 AGTTACTAGTATGTGTATGCGTGAC 58.507 40.000 2.79 0.00 0.00 3.67
590 591 6.688637 AGTTACTAGTATGTGTATGCGTGA 57.311 37.500 2.79 0.00 0.00 4.35
591 592 8.845942 TTTAGTTACTAGTATGTGTATGCGTG 57.154 34.615 2.79 0.00 0.00 5.34
620 621 4.321899 GCATACACTCATTCCTGCCAAAAA 60.322 41.667 0.00 0.00 0.00 1.94
621 622 3.193267 GCATACACTCATTCCTGCCAAAA 59.807 43.478 0.00 0.00 0.00 2.44
622 623 2.754552 GCATACACTCATTCCTGCCAAA 59.245 45.455 0.00 0.00 0.00 3.28
623 624 2.368439 GCATACACTCATTCCTGCCAA 58.632 47.619 0.00 0.00 0.00 4.52
624 625 1.408683 GGCATACACTCATTCCTGCCA 60.409 52.381 6.50 0.00 46.54 4.92
625 626 1.312815 GGCATACACTCATTCCTGCC 58.687 55.000 0.00 0.00 42.00 4.85
626 627 0.940126 CGGCATACACTCATTCCTGC 59.060 55.000 0.00 0.00 0.00 4.85
627 628 1.935873 CACGGCATACACTCATTCCTG 59.064 52.381 0.00 0.00 0.00 3.86
632 633 2.767536 GCACACGGCATACACTCAT 58.232 52.632 0.00 0.00 43.97 2.90
692 693 7.116233 CCTTGGGATTTATTTGTTTTCGTTGAG 59.884 37.037 0.00 0.00 0.00 3.02
693 694 6.926272 CCTTGGGATTTATTTGTTTTCGTTGA 59.074 34.615 0.00 0.00 0.00 3.18
694 695 6.926272 TCCTTGGGATTTATTTGTTTTCGTTG 59.074 34.615 0.00 0.00 0.00 4.10
697 698 6.451393 TGTCCTTGGGATTTATTTGTTTTCG 58.549 36.000 0.00 0.00 32.73 3.46
698 699 7.441836 ACTGTCCTTGGGATTTATTTGTTTTC 58.558 34.615 0.00 0.00 32.73 2.29
747 748 2.359975 GTTCGTTGGGCTGGGGAG 60.360 66.667 0.00 0.00 0.00 4.30
748 749 3.961414 GGTTCGTTGGGCTGGGGA 61.961 66.667 0.00 0.00 0.00 4.81
806 848 0.242555 CCGTTGTTTAATTGGCGGCT 59.757 50.000 11.43 0.00 32.73 5.52
960 1019 1.810606 CTCTGCCGTGTGGACTCTGT 61.811 60.000 0.00 0.00 37.49 3.41
1235 1302 4.179599 GAGGGGAGGGGAGGGGAG 62.180 77.778 0.00 0.00 0.00 4.30
1236 1303 4.761304 AGAGGGGAGGGGAGGGGA 62.761 72.222 0.00 0.00 0.00 4.81
1241 1308 3.036959 GGGAGAGAGGGGAGGGGA 61.037 72.222 0.00 0.00 0.00 4.81
1287 1354 1.680338 AAAAACAACAGAGCCGCTCT 58.320 45.000 17.56 17.56 42.11 4.09
1485 1570 1.006571 CAAAACAGGCCTGCAGCAG 60.007 57.895 33.06 16.23 46.50 4.24
1486 1571 2.500714 CCAAAACAGGCCTGCAGCA 61.501 57.895 33.06 0.00 46.50 4.41
1487 1572 2.341176 CCAAAACAGGCCTGCAGC 59.659 61.111 33.06 3.68 42.60 5.25
1488 1573 2.576832 CCCCAAAACAGGCCTGCAG 61.577 63.158 33.06 18.66 0.00 4.41
1534 1619 3.243201 GCCCTGAATCAATCCGAACAATC 60.243 47.826 0.00 0.00 0.00 2.67
1570 1655 2.556189 CTGGAGTCCATGTATCCTCGAG 59.444 54.545 13.56 5.13 34.04 4.04
1617 1706 1.393539 CACCTAATGCGTTTGACCTCG 59.606 52.381 0.00 0.00 0.00 4.63
1647 1736 6.271566 AGCTAAACGATAAACACTAGTAGCC 58.728 40.000 0.00 0.00 33.52 3.93
1651 1740 8.738106 AGAGTTAGCTAAACGATAAACACTAGT 58.262 33.333 7.99 0.00 43.29 2.57
1703 1792 1.880027 ACTTTGCAATTCGAGGTGACC 59.120 47.619 0.00 0.00 0.00 4.02
1720 1809 6.998802 AGAATGCTTAGGCTCGATAATACTT 58.001 36.000 0.00 0.00 39.59 2.24
1741 1830 6.899393 ATTGCACAATTTTCCTGACTAGAA 57.101 33.333 0.00 0.00 0.00 2.10
1768 1864 3.052036 CAAATTGCAGCGTAGTTTTGCT 58.948 40.909 0.00 0.00 43.58 3.91
1777 1873 1.949525 ACAGAGAACAAATTGCAGCGT 59.050 42.857 0.00 0.00 0.00 5.07
1778 1874 2.693797 ACAGAGAACAAATTGCAGCG 57.306 45.000 0.00 0.00 0.00 5.18
1788 1884 7.093902 ACTCGATGTAATAAGGAACAGAGAACA 60.094 37.037 0.00 0.00 0.00 3.18
1791 1887 6.602009 TCACTCGATGTAATAAGGAACAGAGA 59.398 38.462 0.00 0.00 0.00 3.10
1792 1888 6.796426 TCACTCGATGTAATAAGGAACAGAG 58.204 40.000 0.00 0.00 0.00 3.35
1796 1892 5.903810 ACCTCACTCGATGTAATAAGGAAC 58.096 41.667 0.00 0.00 0.00 3.62
1804 1902 2.531771 TCCCAACCTCACTCGATGTAA 58.468 47.619 0.00 0.00 0.00 2.41
1810 1908 1.482182 TCATCATCCCAACCTCACTCG 59.518 52.381 0.00 0.00 0.00 4.18
1815 1913 6.479006 TCAATATCATCATCATCCCAACCTC 58.521 40.000 0.00 0.00 0.00 3.85
1820 1918 6.445786 TCAGGATCAATATCATCATCATCCCA 59.554 38.462 0.00 0.00 33.41 4.37
1827 1925 5.774102 TGCCTCAGGATCAATATCATCAT 57.226 39.130 0.00 0.00 33.41 2.45
1835 1933 3.094572 CCAAAGTTGCCTCAGGATCAAT 58.905 45.455 0.00 0.00 0.00 2.57
1836 1934 2.108075 TCCAAAGTTGCCTCAGGATCAA 59.892 45.455 0.00 0.00 0.00 2.57
1838 1936 2.290577 ACTCCAAAGTTGCCTCAGGATC 60.291 50.000 0.00 0.00 28.74 3.36
1839 1937 1.707427 ACTCCAAAGTTGCCTCAGGAT 59.293 47.619 0.00 0.00 28.74 3.24
1840 1938 1.140312 ACTCCAAAGTTGCCTCAGGA 58.860 50.000 0.00 0.00 28.74 3.86
1841 1939 2.303022 TCTACTCCAAAGTTGCCTCAGG 59.697 50.000 0.00 0.00 36.92 3.86
1842 1940 3.685139 TCTACTCCAAAGTTGCCTCAG 57.315 47.619 0.00 0.00 36.92 3.35
1843 1941 3.582647 TCATCTACTCCAAAGTTGCCTCA 59.417 43.478 0.00 0.00 36.92 3.86
1844 1942 3.935828 GTCATCTACTCCAAAGTTGCCTC 59.064 47.826 0.00 0.00 36.92 4.70
1845 1943 3.584848 AGTCATCTACTCCAAAGTTGCCT 59.415 43.478 0.00 0.00 36.92 4.75
1846 1944 3.944087 AGTCATCTACTCCAAAGTTGCC 58.056 45.455 0.00 0.00 36.92 4.52
1847 1945 5.241662 AGAAGTCATCTACTCCAAAGTTGC 58.758 41.667 0.00 0.00 37.50 4.17
1859 1957 8.904834 CCTAGCTTAAACAGTAGAAGTCATCTA 58.095 37.037 0.00 0.00 39.71 1.98
1860 1958 7.397761 ACCTAGCTTAAACAGTAGAAGTCATCT 59.602 37.037 0.00 0.00 42.48 2.90
1861 1959 7.548967 ACCTAGCTTAAACAGTAGAAGTCATC 58.451 38.462 0.00 0.00 0.00 2.92
1862 1960 7.483580 ACCTAGCTTAAACAGTAGAAGTCAT 57.516 36.000 0.00 0.00 0.00 3.06
1863 1961 6.912951 ACCTAGCTTAAACAGTAGAAGTCA 57.087 37.500 0.00 0.00 0.00 3.41
1864 1962 7.153315 ACAACCTAGCTTAAACAGTAGAAGTC 58.847 38.462 0.00 0.00 0.00 3.01
1865 1963 7.015389 AGACAACCTAGCTTAAACAGTAGAAGT 59.985 37.037 0.00 0.00 0.00 3.01
1866 1964 7.329717 CAGACAACCTAGCTTAAACAGTAGAAG 59.670 40.741 0.00 0.00 0.00 2.85
1867 1965 7.152645 CAGACAACCTAGCTTAAACAGTAGAA 58.847 38.462 0.00 0.00 0.00 2.10
1868 1966 6.295123 CCAGACAACCTAGCTTAAACAGTAGA 60.295 42.308 0.00 0.00 0.00 2.59
1869 1967 5.869888 CCAGACAACCTAGCTTAAACAGTAG 59.130 44.000 0.00 0.00 0.00 2.57
1870 1968 5.790593 CCAGACAACCTAGCTTAAACAGTA 58.209 41.667 0.00 0.00 0.00 2.74
1871 1969 4.642429 CCAGACAACCTAGCTTAAACAGT 58.358 43.478 0.00 0.00 0.00 3.55
1872 1970 3.437049 GCCAGACAACCTAGCTTAAACAG 59.563 47.826 0.00 0.00 0.00 3.16
1901 2000 2.822006 CGAGGTGGGCTATATACCAGGT 60.822 54.545 0.00 0.00 37.45 4.00
1911 2010 0.535335 CTTAGCAACGAGGTGGGCTA 59.465 55.000 0.00 0.00 37.79 3.93
1912 2011 1.192146 TCTTAGCAACGAGGTGGGCT 61.192 55.000 0.00 0.00 40.26 5.19
1914 2013 0.741221 GCTCTTAGCAACGAGGTGGG 60.741 60.000 0.00 0.00 41.89 4.61
1930 2029 1.137675 GGGGATTTTGGCAGATTGCTC 59.862 52.381 0.67 0.00 44.28 4.26
1940 2039 3.986996 ATTTGCTCTTGGGGATTTTGG 57.013 42.857 0.00 0.00 0.00 3.28
1945 2044 4.404715 CAGAATCAATTTGCTCTTGGGGAT 59.595 41.667 0.00 0.00 0.00 3.85
1946 2045 3.765511 CAGAATCAATTTGCTCTTGGGGA 59.234 43.478 0.00 0.00 0.00 4.81
1950 2049 9.282247 GTACATAACAGAATCAATTTGCTCTTG 57.718 33.333 0.00 0.00 0.00 3.02
1951 2050 9.236006 AGTACATAACAGAATCAATTTGCTCTT 57.764 29.630 0.00 0.00 0.00 2.85
1952 2051 8.798859 AGTACATAACAGAATCAATTTGCTCT 57.201 30.769 0.00 0.00 0.00 4.09
2000 2099 9.817809 GTATGAACCTTTAGATGTCAGTTGATA 57.182 33.333 0.00 0.00 0.00 2.15
2003 2102 7.308782 GGTATGAACCTTTAGATGTCAGTTG 57.691 40.000 0.00 0.00 43.08 3.16
2034 2133 4.033817 GCATAGTAAGCTGCAGAGACAAAG 59.966 45.833 20.43 6.18 38.28 2.77
2046 2146 2.171448 CACAAGAGGGGCATAGTAAGCT 59.829 50.000 0.00 0.00 0.00 3.74
2057 2157 4.285517 AGCTGATACATATCACAAGAGGGG 59.714 45.833 0.00 0.00 37.76 4.79
2101 2201 4.351131 GGATACGCCCTACAACAAAAAG 57.649 45.455 0.00 0.00 0.00 2.27
2208 2308 2.924290 GAGAACCCTTGAGAATTCGTCG 59.076 50.000 0.00 0.00 0.00 5.12
2282 2382 2.503765 TGACTGATTTCGCCCCTCATTA 59.496 45.455 0.00 0.00 0.00 1.90
2283 2383 1.281867 TGACTGATTTCGCCCCTCATT 59.718 47.619 0.00 0.00 0.00 2.57
2289 2389 2.622064 ATACCTGACTGATTTCGCCC 57.378 50.000 0.00 0.00 0.00 6.13
2319 2419 4.433186 TGGTGTTCACAAAACAACTGAG 57.567 40.909 7.40 0.00 38.60 3.35
2443 2565 4.278419 ACAAAATGCCAGTTCAAGTACTCC 59.722 41.667 0.00 0.00 0.00 3.85
2445 2567 5.852282 AACAAAATGCCAGTTCAAGTACT 57.148 34.783 0.00 0.00 0.00 2.73
2471 2594 2.872245 TGCAAGTCTGACAACTAGCAAC 59.128 45.455 10.88 0.00 0.00 4.17
2500 2623 2.039613 TGGGTAACATGCATCTGACACA 59.960 45.455 0.00 0.00 39.74 3.72
2670 2793 4.467735 GAGCTTGTCTTTTGAATCGAACC 58.532 43.478 0.00 0.00 0.00 3.62
2817 2940 0.400594 GGTGGGTGTAGAAGGTTGCT 59.599 55.000 0.00 0.00 0.00 3.91
2818 2941 0.109723 TGGTGGGTGTAGAAGGTTGC 59.890 55.000 0.00 0.00 0.00 4.17
2822 2945 4.569719 AGTTTATGGTGGGTGTAGAAGG 57.430 45.455 0.00 0.00 0.00 3.46
2849 2972 9.685276 ACATTGAAGTGAATATCAGGACAATTA 57.315 29.630 0.00 0.00 0.00 1.40
2850 2973 8.585471 ACATTGAAGTGAATATCAGGACAATT 57.415 30.769 0.00 0.00 0.00 2.32
2874 2998 4.857871 TTGCAGCTGTCAATTCGTATAC 57.142 40.909 16.64 0.00 0.00 1.47
2878 3002 3.648339 AATTTGCAGCTGTCAATTCGT 57.352 38.095 16.64 4.65 0.00 3.85
2883 3007 3.617706 CACAACAAATTTGCAGCTGTCAA 59.382 39.130 18.12 16.47 0.00 3.18
2887 3011 6.715344 AATATCACAACAAATTTGCAGCTG 57.285 33.333 18.12 10.11 0.00 4.24
2895 3019 9.467258 CTCACTGAACAAATATCACAACAAATT 57.533 29.630 0.00 0.00 0.00 1.82
2896 3020 7.596248 GCTCACTGAACAAATATCACAACAAAT 59.404 33.333 0.00 0.00 0.00 2.32
2902 3026 5.308014 AGTGCTCACTGAACAAATATCACA 58.692 37.500 1.15 0.00 40.75 3.58
2905 3035 7.020010 CAGAAAGTGCTCACTGAACAAATATC 58.980 38.462 2.97 0.00 41.58 1.63
2907 3037 6.017934 GTCAGAAAGTGCTCACTGAACAAATA 60.018 38.462 2.97 0.00 41.58 1.40
2914 3044 3.396560 CATGTCAGAAAGTGCTCACTGA 58.603 45.455 2.97 0.00 41.58 3.41
2919 3049 3.406764 AGAACCATGTCAGAAAGTGCTC 58.593 45.455 0.00 0.00 0.00 4.26
2934 3064 8.271458 TGCATTCACTAATCCTAAATAGAACCA 58.729 33.333 0.00 0.00 0.00 3.67
2944 3074 6.150976 CCACAAAGTTGCATTCACTAATCCTA 59.849 38.462 0.00 0.00 0.00 2.94
2960 3090 4.777463 AGCACTACAGTAACCACAAAGTT 58.223 39.130 0.00 0.00 0.00 2.66
2970 3100 4.066646 TGCACTCAAAGCACTACAGTAA 57.933 40.909 0.00 0.00 37.02 2.24
2971 3101 3.744238 TGCACTCAAAGCACTACAGTA 57.256 42.857 0.00 0.00 37.02 2.74
2972 3102 2.614057 GTTGCACTCAAAGCACTACAGT 59.386 45.455 0.00 0.00 42.54 3.55
2973 3103 2.613595 TGTTGCACTCAAAGCACTACAG 59.386 45.455 0.00 0.00 42.54 2.74
2974 3104 2.637947 TGTTGCACTCAAAGCACTACA 58.362 42.857 0.00 0.00 42.54 2.74
2975 3105 3.691049 TTGTTGCACTCAAAGCACTAC 57.309 42.857 0.00 0.00 42.54 2.73
2980 3110 3.111098 CAGTCTTTGTTGCACTCAAAGC 58.889 45.455 25.93 21.93 46.27 3.51
2995 3125 3.838317 TGAAGTACATACAGGCCAGTCTT 59.162 43.478 3.04 0.95 0.00 3.01
3032 3168 5.710513 TGTTGCTCACTTTGCTATTGATT 57.289 34.783 0.00 0.00 0.00 2.57
3033 3169 5.909621 ATGTTGCTCACTTTGCTATTGAT 57.090 34.783 0.00 0.00 0.00 2.57
3040 3176 6.088616 GTCAGAATTTATGTTGCTCACTTTGC 59.911 38.462 0.00 0.00 0.00 3.68
3069 3205 9.082313 AGTCTTTGAATCAACCATAAGACAATT 57.918 29.630 20.31 4.29 42.27 2.32
3070 3206 8.517878 CAGTCTTTGAATCAACCATAAGACAAT 58.482 33.333 20.31 4.83 42.27 2.71
3073 3209 6.655003 TCCAGTCTTTGAATCAACCATAAGAC 59.345 38.462 13.85 13.85 40.91 3.01
3078 3214 6.923199 ATTTCCAGTCTTTGAATCAACCAT 57.077 33.333 0.00 0.00 0.00 3.55
3083 3219 5.775686 CAGCAATTTCCAGTCTTTGAATCA 58.224 37.500 0.00 0.00 0.00 2.57
3085 3221 4.039488 TGCAGCAATTTCCAGTCTTTGAAT 59.961 37.500 0.00 0.00 0.00 2.57
3086 3222 3.384146 TGCAGCAATTTCCAGTCTTTGAA 59.616 39.130 0.00 0.00 0.00 2.69
3087 3223 2.957680 TGCAGCAATTTCCAGTCTTTGA 59.042 40.909 0.00 0.00 0.00 2.69
3107 3243 8.883954 ATCAGTGTCATCTACTTATTCACATG 57.116 34.615 0.00 0.00 0.00 3.21
3124 3260 8.143193 AGAGATGATTCAGAACATATCAGTGTC 58.857 37.037 16.20 4.18 37.25 3.67
3127 3263 8.247666 TGAGAGATGATTCAGAACATATCAGT 57.752 34.615 16.20 4.02 37.25 3.41
3138 3297 6.396450 TCAAGTTCACTGAGAGATGATTCAG 58.604 40.000 0.27 0.27 44.93 3.02
3153 3312 2.056094 GCACATGGCTTCAAGTTCAC 57.944 50.000 0.00 0.00 40.25 3.18
3188 3347 5.972382 GGAGCTTCAGACTAAACATACTACG 59.028 44.000 0.00 0.00 0.00 3.51
3195 3354 3.898123 ACAGAGGAGCTTCAGACTAAACA 59.102 43.478 0.00 0.00 0.00 2.83
3269 3429 6.916360 CCACCCTTGGCATATAAATACAAT 57.084 37.500 0.00 0.00 35.56 2.71
3306 3466 2.103373 AGCCGATGAAGAGAACAGCTA 58.897 47.619 0.00 0.00 0.00 3.32
3319 3479 0.109132 GGTTGAAAAGGCAGCCGATG 60.109 55.000 5.55 0.00 29.40 3.84
3417 3579 5.721232 AGGGCGATGTATACTATTACAAGC 58.279 41.667 4.17 0.00 38.23 4.01
3512 3675 1.498865 GACACAAGCACACCACGAGG 61.499 60.000 0.00 0.00 42.21 4.63
3515 3678 1.165907 ATGGACACAAGCACACCACG 61.166 55.000 0.00 0.00 33.38 4.94
3534 3699 2.853542 TGGGAGACAGGCAAGCCA 60.854 61.111 14.40 0.00 38.92 4.75
3535 3700 2.045536 CTGGGAGACAGGCAAGCC 60.046 66.667 2.02 2.02 43.70 4.35
3576 3741 2.591715 GCGACTGGTTGCACTGGT 60.592 61.111 7.97 0.00 39.74 4.00
3689 3860 2.481185 GGCACTCGATTACGTTCCAAAA 59.519 45.455 0.00 0.00 40.69 2.44
3836 4020 4.099266 TGAAACAAAATAGTTGCAGCCTGT 59.901 37.500 0.00 0.00 32.14 4.00
3841 4025 3.980775 CGGGTGAAACAAAATAGTTGCAG 59.019 43.478 0.00 0.00 37.71 4.41
3849 4033 0.031449 CGTGCCGGGTGAAACAAAAT 59.969 50.000 2.18 0.00 39.98 1.82
3863 4048 3.665675 ATGAAGAGGACGGCGTGCC 62.666 63.158 27.88 21.81 0.00 5.01
3872 4057 5.048504 GTCACAAAGATGCAAATGAAGAGGA 60.049 40.000 0.00 0.00 0.00 3.71
3894 4079 0.872021 GGCGTCACGATCTGATGGTC 60.872 60.000 0.00 0.00 36.51 4.02
3927 4112 3.826157 TGATCCGAATATGGCAAATTCCC 59.174 43.478 0.00 0.00 30.98 3.97
3977 4162 1.499056 GGCGCTCGATATTGCATGG 59.501 57.895 7.64 0.00 0.00 3.66
3978 4163 1.131218 CGGCGCTCGATATTGCATG 59.869 57.895 7.64 0.00 42.43 4.06
3979 4164 1.300931 ACGGCGCTCGATATTGCAT 60.301 52.632 22.10 0.00 42.43 3.96
3983 4168 1.087202 TTTGCACGGCGCTCGATATT 61.087 50.000 22.10 0.00 43.06 1.28
3986 4171 3.788766 GTTTGCACGGCGCTCGAT 61.789 61.111 22.10 6.45 43.06 3.59
4037 4224 5.605534 ACTCAATATAGATGCCAGTGTGTC 58.394 41.667 0.00 0.00 0.00 3.67
4038 4225 5.620738 ACTCAATATAGATGCCAGTGTGT 57.379 39.130 0.00 0.00 0.00 3.72
4039 4226 6.932356 AAACTCAATATAGATGCCAGTGTG 57.068 37.500 0.00 0.00 0.00 3.82
4040 4227 7.611467 TGAAAAACTCAATATAGATGCCAGTGT 59.389 33.333 0.00 0.00 0.00 3.55
4041 4228 7.988737 TGAAAAACTCAATATAGATGCCAGTG 58.011 34.615 0.00 0.00 0.00 3.66
4042 4229 8.757982 ATGAAAAACTCAATATAGATGCCAGT 57.242 30.769 0.00 0.00 37.67 4.00
4043 4230 8.013947 CGATGAAAAACTCAATATAGATGCCAG 58.986 37.037 0.00 0.00 37.67 4.85
4044 4231 7.520453 GCGATGAAAAACTCAATATAGATGCCA 60.520 37.037 0.00 0.00 37.67 4.92
4045 4232 6.798959 GCGATGAAAAACTCAATATAGATGCC 59.201 38.462 0.00 0.00 37.67 4.40
4046 4233 7.355017 TGCGATGAAAAACTCAATATAGATGC 58.645 34.615 0.00 0.00 37.67 3.91
4068 4283 3.783943 GGCAACTTAATTTGTACGATGCG 59.216 43.478 7.31 0.00 32.30 4.73
4179 4401 5.559427 ATTTTATTTTTGCGGGGATTTGC 57.441 34.783 0.00 0.00 0.00 3.68
4187 4409 7.805071 TGCCACAATTTTATTTTATTTTTGCGG 59.195 29.630 0.00 0.00 0.00 5.69
4188 4410 8.625726 GTGCCACAATTTTATTTTATTTTTGCG 58.374 29.630 0.00 0.00 0.00 4.85
4189 4411 8.910666 GGTGCCACAATTTTATTTTATTTTTGC 58.089 29.630 0.00 0.00 0.00 3.68
4190 4412 9.956720 TGGTGCCACAATTTTATTTTATTTTTG 57.043 25.926 0.00 0.00 0.00 2.44
4216 4452 2.105821 TCTGTTCCATCGAAACCCTTGT 59.894 45.455 0.00 0.00 0.00 3.16
4218 4454 3.610911 GATCTGTTCCATCGAAACCCTT 58.389 45.455 0.00 0.00 0.00 3.95
4255 4491 9.959749 TGTAAACTCATACCACAAGAAATTTTC 57.040 29.630 0.66 0.66 0.00 2.29
4257 4493 9.912634 CATGTAAACTCATACCACAAGAAATTT 57.087 29.630 0.00 0.00 0.00 1.82
4259 4495 8.862325 TCATGTAAACTCATACCACAAGAAAT 57.138 30.769 0.00 0.00 0.00 2.17
4263 4499 7.550551 ACAGATCATGTAAACTCATACCACAAG 59.449 37.037 0.00 0.00 41.60 3.16
4272 4508 3.932710 GCGGAACAGATCATGTAAACTCA 59.067 43.478 0.00 0.00 43.00 3.41
4273 4509 3.932710 TGCGGAACAGATCATGTAAACTC 59.067 43.478 0.00 0.00 43.00 3.01
4282 4518 2.013563 GCTCCAATGCGGAACAGATCA 61.014 52.381 0.00 0.00 45.75 2.92
4331 4567 7.225341 TGAACTCGAGATCATGTCAATATTTGG 59.775 37.037 20.20 0.00 0.00 3.28
4332 4568 8.134905 TGAACTCGAGATCATGTCAATATTTG 57.865 34.615 20.20 0.00 0.00 2.32
4350 4586 6.696825 ATTTCGTGCATCTATATGAACTCG 57.303 37.500 0.00 0.00 39.27 4.18
4353 4589 9.964253 CTATGAATTTCGTGCATCTATATGAAC 57.036 33.333 1.25 0.00 38.19 3.18
4362 4598 7.324616 GCCTATTTTCTATGAATTTCGTGCATC 59.675 37.037 1.25 0.00 0.00 3.91
4373 4609 5.199723 TGTGGCATGCCTATTTTCTATGAA 58.800 37.500 35.53 9.43 36.94 2.57
4391 4627 1.255882 TGGATGTGAACCATTGTGGC 58.744 50.000 0.00 0.00 42.67 5.01
4392 4628 4.333913 TTTTGGATGTGAACCATTGTGG 57.666 40.909 0.00 0.00 45.02 4.17
4394 4630 6.594937 GCATAATTTTGGATGTGAACCATTGT 59.405 34.615 0.00 0.00 37.26 2.71
4437 4674 1.131126 CCGGTTGTGCTTGATCATGTC 59.869 52.381 10.05 3.88 0.00 3.06
4454 4691 1.520494 CTTGATCTGATCATGGCCGG 58.480 55.000 20.16 0.00 39.39 6.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.