Multiple sequence alignment - TraesCS7D01G136200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G136200 chr7D 100.000 7591 0 0 1 7591 87430326 87437916 0.000000e+00 14019.0
1 TraesCS7D01G136200 chr7D 87.903 1488 162 10 4352 5836 87433306 87434778 0.000000e+00 1735.0
2 TraesCS7D01G136200 chr7D 87.911 1489 160 12 2981 4453 87434677 87436161 0.000000e+00 1735.0
3 TraesCS7D01G136200 chr7D 84.858 1235 142 13 5310 6526 87433046 87434253 0.000000e+00 1203.0
4 TraesCS7D01G136200 chr7D 83.573 974 125 15 5567 6524 87434677 87435631 0.000000e+00 880.0
5 TraesCS7D01G136200 chr7D 83.573 974 125 15 4352 5306 87435892 87436849 0.000000e+00 880.0
6 TraesCS7D01G136200 chr7D 86.767 597 73 1 3921 4511 87433037 87433633 0.000000e+00 660.0
7 TraesCS7D01G136200 chr7D 86.767 597 73 1 2712 3308 87434246 87434836 0.000000e+00 660.0
8 TraesCS7D01G136200 chr7D 88.746 311 27 5 597 901 87430558 87430866 2.590000e-99 374.0
9 TraesCS7D01G136200 chr7D 88.746 311 27 5 233 541 87430922 87431226 2.590000e-99 374.0
10 TraesCS7D01G136200 chr7D 90.476 147 14 0 4524 4670 87435896 87436042 2.160000e-45 195.0
11 TraesCS7D01G136200 chr7A 94.184 6087 296 28 893 6946 88950922 88956983 0.000000e+00 9226.0
12 TraesCS7D01G136200 chr7A 89.182 1516 149 9 2981 4484 88954375 88955887 0.000000e+00 1877.0
13 TraesCS7D01G136200 chr7A 88.038 1488 160 7 4352 5836 88953004 88954476 0.000000e+00 1746.0
14 TraesCS7D01G136200 chr7A 84.915 1233 141 15 5312 6526 88952746 88953951 0.000000e+00 1205.0
15 TraesCS7D01G136200 chr7A 84.622 1242 150 20 2721 3928 88955333 88956567 0.000000e+00 1197.0
16 TraesCS7D01G136200 chr7A 85.744 968 105 11 5567 6519 88954375 88955324 0.000000e+00 992.0
17 TraesCS7D01G136200 chr7A 83.503 982 132 16 4352 5306 88955587 88956565 0.000000e+00 889.0
18 TraesCS7D01G136200 chr7A 87.329 584 68 3 3921 4498 88952735 88953318 0.000000e+00 664.0
19 TraesCS7D01G136200 chr7A 92.932 382 22 5 7082 7460 88962626 88963005 1.110000e-152 551.0
20 TraesCS7D01G136200 chr7A 86.186 333 40 5 1 330 88950365 88950694 9.370000e-94 355.0
21 TraesCS7D01G136200 chr7A 91.975 162 13 0 4184 4345 88954543 88954704 2.130000e-55 228.0
22 TraesCS7D01G136200 chr7A 93.333 120 7 1 6965 7084 88956970 88957088 7.830000e-40 176.0
23 TraesCS7D01G136200 chr7A 90.598 117 10 1 398 513 88950693 88950809 3.670000e-33 154.0
24 TraesCS7D01G136200 chr7A 87.755 49 5 1 508 555 88950911 88950959 1.000000e-03 56.5
25 TraesCS7D01G136200 chr7B 93.584 6001 316 31 893 6859 36432688 36438653 0.000000e+00 8885.0
26 TraesCS7D01G136200 chr7B 88.788 1543 155 10 2981 4511 36436140 36437676 0.000000e+00 1875.0
27 TraesCS7D01G136200 chr7B 87.970 1488 152 9 4352 5836 36434778 36436241 0.000000e+00 1731.0
28 TraesCS7D01G136200 chr7B 85.576 1241 140 15 2721 3928 36437095 36438329 0.000000e+00 1264.0
29 TraesCS7D01G136200 chr7B 84.753 1233 128 18 5310 6524 36434518 36435708 0.000000e+00 1181.0
30 TraesCS7D01G136200 chr7B 84.995 973 110 12 5567 6524 36436140 36437091 0.000000e+00 955.0
31 TraesCS7D01G136200 chr7B 84.474 979 128 11 4352 5306 36437349 36438327 0.000000e+00 944.0
32 TraesCS7D01G136200 chr7B 89.100 578 63 0 2731 3308 36435722 36436299 0.000000e+00 719.0
33 TraesCS7D01G136200 chr7B 86.935 597 72 3 3921 4511 36434509 36435105 0.000000e+00 665.0
34 TraesCS7D01G136200 chr7B 89.835 364 17 7 7103 7460 36438651 36439000 4.180000e-122 449.0
35 TraesCS7D01G136200 chr7B 84.384 333 43 8 1 327 36432128 36432457 1.230000e-82 318.0
36 TraesCS7D01G136200 chr7B 92.308 117 8 1 398 513 36432459 36432575 1.690000e-36 165.0
37 TraesCS7D01G136200 chr7B 87.755 49 6 0 508 556 36432677 36432725 2.960000e-04 58.4
38 TraesCS7D01G136200 chr6B 90.192 938 81 9 814 1750 653209248 653208321 0.000000e+00 1212.0
39 TraesCS7D01G136200 chr6B 90.805 87 8 0 455 541 653209248 653209162 4.810000e-22 117.0
40 TraesCS7D01G136200 chr6B 80.000 110 19 3 3449 3558 563290379 563290273 2.270000e-10 78.7
41 TraesCS7D01G136200 chr5B 89.909 882 77 7 869 1750 43247360 43248229 0.000000e+00 1125.0
42 TraesCS7D01G136200 chr2A 89.323 665 58 3 1083 1747 628687852 628688503 0.000000e+00 822.0
43 TraesCS7D01G136200 chr2A 93.810 210 9 4 814 1022 628687651 628687857 5.720000e-81 313.0
44 TraesCS7D01G136200 chr2A 91.954 87 7 0 455 541 628687651 628687737 1.030000e-23 122.0
45 TraesCS7D01G136200 chrUn 92.160 574 36 4 893 1466 304727608 304727044 0.000000e+00 802.0
46 TraesCS7D01G136200 chrUn 86.186 333 40 5 1 330 304728165 304727836 9.370000e-94 355.0
47 TraesCS7D01G136200 chrUn 90.598 117 10 1 398 513 304727837 304727721 3.670000e-33 154.0
48 TraesCS7D01G136200 chrUn 87.755 49 5 1 508 555 304727619 304727571 1.000000e-03 56.5
49 TraesCS7D01G136200 chr2D 89.279 569 49 9 814 1377 3458837 3459398 0.000000e+00 702.0
50 TraesCS7D01G136200 chr2D 90.400 375 36 0 1374 1748 3571769 3572143 1.900000e-135 494.0
51 TraesCS7D01G136200 chr2B 89.744 507 48 3 1244 1750 108536962 108537464 0.000000e+00 645.0
52 TraesCS7D01G136200 chr2B 91.724 435 30 6 814 1246 108528052 108528482 3.920000e-167 599.0
53 TraesCS7D01G136200 chr2B 93.103 87 6 0 455 541 108528052 108528138 2.220000e-25 128.0
54 TraesCS7D01G136200 chr3B 92.857 266 13 2 1485 1750 735246155 735246414 1.550000e-101 381.0
55 TraesCS7D01G136200 chr6A 85.430 151 22 0 1469 1619 606121464 606121314 2.840000e-34 158.0
56 TraesCS7D01G136200 chr1A 94.521 73 4 0 1116 1188 586709446 586709518 6.230000e-21 113.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G136200 chr7D 87430326 87437916 7590 False 14019.000000 14019 100.000000 1 7591 1 chr7D.!!$F1 7590
1 TraesCS7D01G136200 chr7D 87430558 87436849 6291 False 869.600000 1735 86.932000 233 6526 10 chr7D.!!$F2 6293
2 TraesCS7D01G136200 chr7A 88950365 88956983 6618 False 2447.875000 9226 89.680750 1 6946 4 chr7A.!!$F2 6945
3 TraesCS7D01G136200 chr7A 88952735 88957088 4353 False 997.111111 1877 87.626778 2721 7084 9 chr7A.!!$F3 4363
4 TraesCS7D01G136200 chr7B 36432128 36438653 6525 False 2356.600000 8885 89.507750 1 6859 4 chr7B.!!$F1 6858
5 TraesCS7D01G136200 chr7B 36434509 36439000 4491 False 1087.000000 1875 86.936222 2721 7460 9 chr7B.!!$F2 4739
6 TraesCS7D01G136200 chr6B 653208321 653209248 927 True 664.500000 1212 90.498500 455 1750 2 chr6B.!!$R2 1295
7 TraesCS7D01G136200 chr5B 43247360 43248229 869 False 1125.000000 1125 89.909000 869 1750 1 chr5B.!!$F1 881
8 TraesCS7D01G136200 chr2A 628687651 628688503 852 False 419.000000 822 91.695667 455 1747 3 chr2A.!!$F1 1292
9 TraesCS7D01G136200 chrUn 304727044 304728165 1121 True 341.875000 802 89.174750 1 1466 4 chrUn.!!$R1 1465
10 TraesCS7D01G136200 chr2D 3458837 3459398 561 False 702.000000 702 89.279000 814 1377 1 chr2D.!!$F1 563
11 TraesCS7D01G136200 chr2B 108536962 108537464 502 False 645.000000 645 89.744000 1244 1750 1 chr2B.!!$F1 506

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
781 916 0.106967 GGACTCCCCTGCTGATTTCC 60.107 60.0 0.0 0.0 0.0 3.13 F
782 917 0.915364 GACTCCCCTGCTGATTTCCT 59.085 55.0 0.0 0.0 0.0 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
6575 6790 2.100631 CGGTCAGTGCGGTTCCATC 61.101 63.158 0.0 0.0 0.00 3.51 R
6618 6833 0.329596 GTGCAAATCTCCTCCCAGGT 59.670 55.000 0.0 0.0 36.53 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
56 57 8.915654 CAAGTTTTTAATGCTTAGTGGAACATC 58.084 33.333 0.00 0.00 44.52 3.06
60 61 4.644103 AATGCTTAGTGGAACATCATGC 57.356 40.909 0.00 0.00 44.52 4.06
62 63 1.678101 GCTTAGTGGAACATCATGCCC 59.322 52.381 0.00 0.00 44.52 5.36
77 82 2.038975 CCCGGGGAGAACCTCTGA 59.961 66.667 14.71 0.00 40.03 3.27
78 83 1.383248 CCCGGGGAGAACCTCTGAT 60.383 63.158 14.71 0.00 40.03 2.90
89 94 4.753233 AGAACCTCTGATTCTCATGTTCG 58.247 43.478 0.00 0.00 35.89 3.95
98 103 4.152938 TGATTCTCATGTTCGAGTTGCAAG 59.847 41.667 0.00 0.00 34.46 4.01
99 104 3.385193 TCTCATGTTCGAGTTGCAAGA 57.615 42.857 0.00 0.00 34.46 3.02
104 109 6.595326 TCTCATGTTCGAGTTGCAAGAAATAT 59.405 34.615 0.00 0.00 34.46 1.28
129 134 1.296056 AATGGTTCGGTCGAAAGCCG 61.296 55.000 7.40 6.61 46.94 5.52
132 137 1.952635 GTTCGGTCGAAAGCCGTGT 60.953 57.895 12.10 0.00 46.12 4.49
185 190 1.007118 AGGTGGGAAATGGGAATGGAC 59.993 52.381 0.00 0.00 0.00 4.02
186 191 1.272985 GGTGGGAAATGGGAATGGACA 60.273 52.381 0.00 0.00 0.00 4.02
189 194 1.342374 GGGAAATGGGAATGGACAGCT 60.342 52.381 0.00 0.00 0.00 4.24
214 220 0.532115 GGCCCAATTGCTGGTTACTG 59.468 55.000 0.00 0.00 44.76 2.74
223 229 6.875195 CCAATTGCTGGTTACTGAAATTGAAT 59.125 34.615 17.12 0.00 46.52 2.57
260 393 3.266510 TGTGCTGTCATTAGATGTCCC 57.733 47.619 0.00 0.00 0.00 4.46
262 395 3.118629 TGTGCTGTCATTAGATGTCCCTC 60.119 47.826 0.00 0.00 0.00 4.30
279 412 1.264288 CCTCTTTGTGTTTCCTGCGAC 59.736 52.381 0.00 0.00 0.00 5.19
330 464 4.505191 TCAGTTCAGCGTGTTAGTTTGTAC 59.495 41.667 0.00 0.00 0.00 2.90
331 465 4.269123 CAGTTCAGCGTGTTAGTTTGTACA 59.731 41.667 0.00 0.00 0.00 2.90
350 484 7.058023 TGTACAAACTTCTACAGCTAGGAAA 57.942 36.000 0.00 0.00 0.00 3.13
354 488 7.331791 ACAAACTTCTACAGCTAGGAAATAGG 58.668 38.462 0.00 0.00 31.55 2.57
357 491 7.114866 ACTTCTACAGCTAGGAAATAGGAAC 57.885 40.000 0.00 0.00 31.55 3.62
358 492 6.898521 ACTTCTACAGCTAGGAAATAGGAACT 59.101 38.462 0.00 0.00 46.37 3.01
389 523 6.552859 TGAGCTGTGTTTTTATTTCATCGA 57.447 33.333 0.00 0.00 0.00 3.59
426 560 2.708325 GACTCCCCTGCTGATTTCCTAT 59.292 50.000 0.00 0.00 0.00 2.57
477 612 5.051409 TGATGATTGGCTTCATACCATCA 57.949 39.130 0.00 0.00 36.48 3.07
478 613 5.447757 TGATGATTGGCTTCATACCATCAA 58.552 37.500 0.00 0.00 36.48 2.57
483 618 4.389890 TGGCTTCATACCATCAAATTGC 57.610 40.909 0.00 0.00 30.29 3.56
508 643 8.552034 GCTGCCTTATCTTACAGTTTTATACAG 58.448 37.037 0.00 0.00 32.65 2.74
526 661 2.918712 AGTATATGACTGCACCTGCC 57.081 50.000 0.00 0.00 41.18 4.85
528 663 2.103771 AGTATATGACTGCACCTGCCAG 59.896 50.000 0.00 0.00 41.18 4.85
529 664 1.206878 ATATGACTGCACCTGCCAGA 58.793 50.000 0.00 0.00 41.18 3.86
530 665 0.983467 TATGACTGCACCTGCCAGAA 59.017 50.000 0.00 0.00 41.18 3.02
534 669 1.900016 CTGCACCTGCCAGAAAGCA 60.900 57.895 0.00 0.00 41.46 3.91
535 670 1.228644 TGCACCTGCCAGAAAGCAT 60.229 52.632 0.00 0.00 43.09 3.79
536 671 1.214589 GCACCTGCCAGAAAGCATG 59.785 57.895 0.00 0.00 43.09 4.06
537 672 1.530013 GCACCTGCCAGAAAGCATGT 61.530 55.000 0.00 0.00 43.09 3.21
538 673 0.963962 CACCTGCCAGAAAGCATGTT 59.036 50.000 0.00 0.00 43.09 2.71
541 676 2.040278 ACCTGCCAGAAAGCATGTTCTA 59.960 45.455 0.00 0.00 43.09 2.10
542 677 2.681848 CCTGCCAGAAAGCATGTTCTAG 59.318 50.000 0.00 0.00 43.09 2.43
544 679 4.197750 CTGCCAGAAAGCATGTTCTAGAT 58.802 43.478 0.00 0.00 43.09 1.98
545 680 4.592942 TGCCAGAAAGCATGTTCTAGATT 58.407 39.130 0.00 0.00 38.00 2.40
546 681 4.637534 TGCCAGAAAGCATGTTCTAGATTC 59.362 41.667 0.00 0.00 38.00 2.52
547 682 4.880696 GCCAGAAAGCATGTTCTAGATTCT 59.119 41.667 0.00 0.00 35.63 2.40
548 683 5.356470 GCCAGAAAGCATGTTCTAGATTCTT 59.644 40.000 0.00 0.00 35.63 2.52
549 684 6.458070 GCCAGAAAGCATGTTCTAGATTCTTC 60.458 42.308 0.00 0.00 35.63 2.87
551 686 7.011295 CCAGAAAGCATGTTCTAGATTCTTCTC 59.989 40.741 0.00 0.00 35.63 2.87
552 687 7.765360 CAGAAAGCATGTTCTAGATTCTTCTCT 59.235 37.037 0.00 0.00 35.63 3.10
554 689 8.860780 AAAGCATGTTCTAGATTCTTCTCTTT 57.139 30.769 0.00 0.00 33.17 2.52
555 690 7.846644 AGCATGTTCTAGATTCTTCTCTTTG 57.153 36.000 0.00 0.00 33.17 2.77
556 691 6.822676 AGCATGTTCTAGATTCTTCTCTTTGG 59.177 38.462 0.00 0.00 33.17 3.28
557 692 6.820656 GCATGTTCTAGATTCTTCTCTTTGGA 59.179 38.462 0.00 0.00 33.17 3.53
560 695 7.162082 TGTTCTAGATTCTTCTCTTTGGAACC 58.838 38.462 0.00 0.00 32.91 3.62
563 698 8.068892 TCTAGATTCTTCTCTTTGGAACCTAC 57.931 38.462 0.00 0.00 33.17 3.18
564 699 6.688073 AGATTCTTCTCTTTGGAACCTACA 57.312 37.500 0.00 0.00 0.00 2.74
565 700 7.079451 AGATTCTTCTCTTTGGAACCTACAA 57.921 36.000 0.00 0.00 0.00 2.41
566 701 7.164803 AGATTCTTCTCTTTGGAACCTACAAG 58.835 38.462 0.00 0.00 0.00 3.16
567 702 5.228945 TCTTCTCTTTGGAACCTACAAGG 57.771 43.478 0.00 0.00 42.49 3.61
578 713 2.143876 CCTACAAGGTGGGAAATGGG 57.856 55.000 0.00 0.00 36.20 4.00
580 715 2.042433 CCTACAAGGTGGGAAATGGGAA 59.958 50.000 0.00 0.00 36.20 3.97
582 717 2.539302 ACAAGGTGGGAAATGGGAATG 58.461 47.619 0.00 0.00 0.00 2.67
584 719 1.392407 AGGTGGGAAATGGGAATGGA 58.608 50.000 0.00 0.00 0.00 3.41
588 723 2.117865 TGGGAAATGGGAATGGATTGC 58.882 47.619 0.00 0.00 0.00 3.56
589 724 2.117865 GGGAAATGGGAATGGATTGCA 58.882 47.619 0.00 0.00 0.00 4.08
591 726 3.903090 GGGAAATGGGAATGGATTGCATA 59.097 43.478 0.00 0.00 0.00 3.14
593 728 5.484715 GGAAATGGGAATGGATTGCATATG 58.515 41.667 0.00 0.00 0.00 1.78
594 729 5.484715 GAAATGGGAATGGATTGCATATGG 58.515 41.667 4.56 0.00 0.00 2.74
595 730 2.892118 TGGGAATGGATTGCATATGGG 58.108 47.619 4.56 0.00 0.00 4.00
596 731 2.181975 GGGAATGGATTGCATATGGGG 58.818 52.381 4.56 0.00 0.00 4.96
597 732 1.551883 GGAATGGATTGCATATGGGGC 59.448 52.381 4.56 0.00 0.00 5.80
598 733 1.551883 GAATGGATTGCATATGGGGCC 59.448 52.381 4.56 0.00 0.00 5.80
600 735 0.264062 TGGATTGCATATGGGGCCAA 59.736 50.000 4.39 0.00 0.00 4.52
602 737 1.980036 GGATTGCATATGGGGCCAATT 59.020 47.619 4.39 0.00 0.00 2.32
603 738 2.372837 GGATTGCATATGGGGCCAATTT 59.627 45.455 4.39 0.00 0.00 1.82
605 740 1.876849 TGCATATGGGGCCAATTTGT 58.123 45.000 12.27 0.00 0.00 2.83
606 741 1.485480 TGCATATGGGGCCAATTTGTG 59.515 47.619 12.27 5.04 0.00 3.33
608 743 1.764134 CATATGGGGCCAATTTGTGCT 59.236 47.619 4.39 0.00 0.00 4.40
610 745 0.837260 ATGGGGCCAATTTGTGCTGT 60.837 50.000 4.39 0.00 0.00 4.40
611 746 1.293179 GGGGCCAATTTGTGCTGTC 59.707 57.895 4.39 0.00 0.00 3.51
612 747 1.470996 GGGGCCAATTTGTGCTGTCA 61.471 55.000 4.39 0.00 0.00 3.58
613 748 0.609662 GGGCCAATTTGTGCTGTCAT 59.390 50.000 4.39 0.00 0.00 3.06
614 749 1.002315 GGGCCAATTTGTGCTGTCATT 59.998 47.619 4.39 0.00 0.00 2.57
615 750 2.233431 GGGCCAATTTGTGCTGTCATTA 59.767 45.455 4.39 0.00 0.00 1.90
616 751 3.253230 GGCCAATTTGTGCTGTCATTAC 58.747 45.455 0.00 0.00 0.00 1.89
617 752 3.305950 GGCCAATTTGTGCTGTCATTACA 60.306 43.478 0.00 0.00 0.00 2.41
618 753 4.497300 GCCAATTTGTGCTGTCATTACAT 58.503 39.130 0.00 0.00 34.37 2.29
619 754 4.327898 GCCAATTTGTGCTGTCATTACATG 59.672 41.667 0.00 0.00 34.37 3.21
620 755 5.472148 CCAATTTGTGCTGTCATTACATGT 58.528 37.500 2.69 2.69 34.37 3.21
621 756 5.574055 CCAATTTGTGCTGTCATTACATGTC 59.426 40.000 0.00 0.00 34.37 3.06
622 757 4.764679 TTTGTGCTGTCATTACATGTCC 57.235 40.909 0.00 0.00 34.37 4.02
623 758 2.345876 TGTGCTGTCATTACATGTCCG 58.654 47.619 0.00 0.00 34.37 4.79
624 759 2.289382 TGTGCTGTCATTACATGTCCGT 60.289 45.455 0.00 0.00 34.37 4.69
625 760 2.094258 GTGCTGTCATTACATGTCCGTG 59.906 50.000 0.00 0.00 34.37 4.94
626 761 2.289382 TGCTGTCATTACATGTCCGTGT 60.289 45.455 0.00 0.00 34.37 4.49
627 762 2.742053 GCTGTCATTACATGTCCGTGTT 59.258 45.455 0.00 0.00 34.37 3.32
628 763 3.188460 GCTGTCATTACATGTCCGTGTTT 59.812 43.478 0.00 0.00 34.37 2.83
629 764 4.711721 CTGTCATTACATGTCCGTGTTTG 58.288 43.478 0.00 0.00 34.37 2.93
630 765 4.130857 TGTCATTACATGTCCGTGTTTGT 58.869 39.130 0.00 0.00 33.62 2.83
631 766 4.024472 TGTCATTACATGTCCGTGTTTGTG 60.024 41.667 0.00 0.00 33.62 3.33
632 767 4.024387 GTCATTACATGTCCGTGTTTGTGT 60.024 41.667 0.00 0.00 33.62 3.72
633 768 4.576873 TCATTACATGTCCGTGTTTGTGTT 59.423 37.500 0.00 0.00 33.62 3.32
634 769 4.966965 TTACATGTCCGTGTTTGTGTTT 57.033 36.364 0.00 0.00 33.62 2.83
635 770 3.414549 ACATGTCCGTGTTTGTGTTTC 57.585 42.857 0.00 0.00 0.00 2.78
636 771 2.098443 ACATGTCCGTGTTTGTGTTTCC 59.902 45.455 0.00 0.00 0.00 3.13
637 772 2.116827 TGTCCGTGTTTGTGTTTCCT 57.883 45.000 0.00 0.00 0.00 3.36
638 773 2.011222 TGTCCGTGTTTGTGTTTCCTC 58.989 47.619 0.00 0.00 0.00 3.71
639 774 1.332686 GTCCGTGTTTGTGTTTCCTCC 59.667 52.381 0.00 0.00 0.00 4.30
640 775 0.306533 CCGTGTTTGTGTTTCCTCCG 59.693 55.000 0.00 0.00 0.00 4.63
641 776 1.292061 CGTGTTTGTGTTTCCTCCGA 58.708 50.000 0.00 0.00 0.00 4.55
642 777 1.666700 CGTGTTTGTGTTTCCTCCGAA 59.333 47.619 0.00 0.00 0.00 4.30
643 778 2.289547 CGTGTTTGTGTTTCCTCCGAAT 59.710 45.455 0.00 0.00 0.00 3.34
644 779 3.606153 CGTGTTTGTGTTTCCTCCGAATC 60.606 47.826 0.00 0.00 0.00 2.52
645 780 2.882137 TGTTTGTGTTTCCTCCGAATCC 59.118 45.455 0.00 0.00 0.00 3.01
646 781 3.146847 GTTTGTGTTTCCTCCGAATCCT 58.853 45.455 0.00 0.00 0.00 3.24
647 782 2.762535 TGTGTTTCCTCCGAATCCTC 57.237 50.000 0.00 0.00 0.00 3.71
648 783 2.257207 TGTGTTTCCTCCGAATCCTCT 58.743 47.619 0.00 0.00 0.00 3.69
649 784 2.637872 TGTGTTTCCTCCGAATCCTCTT 59.362 45.455 0.00 0.00 0.00 2.85
650 785 3.072476 TGTGTTTCCTCCGAATCCTCTTT 59.928 43.478 0.00 0.00 0.00 2.52
651 786 4.072839 GTGTTTCCTCCGAATCCTCTTTT 58.927 43.478 0.00 0.00 0.00 2.27
652 787 4.072131 TGTTTCCTCCGAATCCTCTTTTG 58.928 43.478 0.00 0.00 0.00 2.44
653 788 3.350219 TTCCTCCGAATCCTCTTTTGG 57.650 47.619 0.00 0.00 0.00 3.28
654 789 1.065418 TCCTCCGAATCCTCTTTTGGC 60.065 52.381 0.00 0.00 31.15 4.52
655 790 1.340017 CCTCCGAATCCTCTTTTGGCA 60.340 52.381 0.00 0.00 31.15 4.92
656 791 2.436417 CTCCGAATCCTCTTTTGGCAA 58.564 47.619 0.00 0.00 31.15 4.52
657 792 3.019564 CTCCGAATCCTCTTTTGGCAAT 58.980 45.455 0.00 0.00 31.15 3.56
658 793 3.430453 TCCGAATCCTCTTTTGGCAATT 58.570 40.909 0.00 0.00 31.15 2.32
659 794 3.193267 TCCGAATCCTCTTTTGGCAATTG 59.807 43.478 0.00 0.00 31.15 2.32
660 795 2.925563 CGAATCCTCTTTTGGCAATTGC 59.074 45.455 22.47 22.47 41.14 3.56
661 796 3.367703 CGAATCCTCTTTTGGCAATTGCT 60.368 43.478 28.42 5.24 41.70 3.91
662 797 3.604875 ATCCTCTTTTGGCAATTGCTG 57.395 42.857 28.42 14.07 41.70 4.41
663 798 2.596346 TCCTCTTTTGGCAATTGCTGA 58.404 42.857 28.42 15.22 41.70 4.26
664 799 3.167485 TCCTCTTTTGGCAATTGCTGAT 58.833 40.909 28.42 0.00 41.70 2.90
665 800 3.579586 TCCTCTTTTGGCAATTGCTGATT 59.420 39.130 28.42 0.00 41.70 2.57
666 801 3.682858 CCTCTTTTGGCAATTGCTGATTG 59.317 43.478 28.42 16.27 46.43 2.67
667 802 4.312443 CTCTTTTGGCAATTGCTGATTGT 58.688 39.130 28.42 0.00 45.62 2.71
672 807 3.581024 GGCAATTGCTGATTGTCTTCA 57.419 42.857 28.42 0.00 44.98 3.02
673 808 3.508762 GGCAATTGCTGATTGTCTTCAG 58.491 45.455 28.42 0.00 44.98 3.02
674 809 3.057033 GGCAATTGCTGATTGTCTTCAGT 60.057 43.478 28.42 0.00 44.98 3.41
675 810 4.553323 GCAATTGCTGATTGTCTTCAGTT 58.447 39.130 23.21 0.00 45.62 3.16
676 811 4.620184 GCAATTGCTGATTGTCTTCAGTTC 59.380 41.667 23.21 0.00 45.62 3.01
677 812 5.765176 CAATTGCTGATTGTCTTCAGTTCA 58.235 37.500 0.00 0.00 44.10 3.18
678 813 5.624344 ATTGCTGATTGTCTTCAGTTCAG 57.376 39.130 3.65 0.00 44.10 3.02
679 814 3.468304 GCTGATTGTCTTCAGTTCAGC 57.532 47.619 7.38 7.38 45.19 4.26
682 817 4.971008 CTGATTGTCTTCAGTTCAGCATG 58.029 43.478 0.00 0.00 38.64 4.06
683 818 4.392047 TGATTGTCTTCAGTTCAGCATGT 58.608 39.130 0.00 0.00 37.40 3.21
684 819 4.823442 TGATTGTCTTCAGTTCAGCATGTT 59.177 37.500 0.00 0.00 37.40 2.71
685 820 5.997129 TGATTGTCTTCAGTTCAGCATGTTA 59.003 36.000 0.00 0.00 37.40 2.41
686 821 5.929697 TTGTCTTCAGTTCAGCATGTTAG 57.070 39.130 0.00 0.00 37.40 2.34
687 822 4.960938 TGTCTTCAGTTCAGCATGTTAGT 58.039 39.130 0.00 0.00 37.40 2.24
688 823 6.096673 TGTCTTCAGTTCAGCATGTTAGTA 57.903 37.500 0.00 0.00 37.40 1.82
689 824 6.701340 TGTCTTCAGTTCAGCATGTTAGTAT 58.299 36.000 0.00 0.00 37.40 2.12
690 825 6.591448 TGTCTTCAGTTCAGCATGTTAGTATG 59.409 38.462 0.00 0.00 37.40 2.39
691 826 6.591834 GTCTTCAGTTCAGCATGTTAGTATGT 59.408 38.462 0.00 0.00 37.40 2.29
692 827 7.759886 GTCTTCAGTTCAGCATGTTAGTATGTA 59.240 37.037 0.00 0.00 37.40 2.29
693 828 8.478066 TCTTCAGTTCAGCATGTTAGTATGTAT 58.522 33.333 0.00 0.00 37.40 2.29
694 829 8.424274 TTCAGTTCAGCATGTTAGTATGTATG 57.576 34.615 0.00 0.00 37.40 2.39
695 830 7.781056 TCAGTTCAGCATGTTAGTATGTATGA 58.219 34.615 0.00 0.00 37.40 2.15
696 831 8.257306 TCAGTTCAGCATGTTAGTATGTATGAA 58.743 33.333 0.00 0.00 35.49 2.57
697 832 8.331022 CAGTTCAGCATGTTAGTATGTATGAAC 58.669 37.037 19.58 19.58 45.16 3.18
698 833 8.040727 AGTTCAGCATGTTAGTATGTATGAACA 58.959 33.333 24.09 0.00 45.97 3.18
699 834 8.830580 GTTCAGCATGTTAGTATGTATGAACAT 58.169 33.333 20.89 0.00 44.78 2.71
700 835 8.593492 TCAGCATGTTAGTATGTATGAACATC 57.407 34.615 0.00 0.00 40.82 3.06
701 836 8.424133 TCAGCATGTTAGTATGTATGAACATCT 58.576 33.333 0.00 0.00 40.82 2.90
702 837 9.696917 CAGCATGTTAGTATGTATGAACATCTA 57.303 33.333 0.00 0.00 42.92 1.98
703 838 9.698309 AGCATGTTAGTATGTATGAACATCTAC 57.302 33.333 0.00 0.00 42.92 2.59
704 839 9.476202 GCATGTTAGTATGTATGAACATCTACA 57.524 33.333 0.00 0.00 42.92 2.74
707 842 9.197306 TGTTAGTATGTATGAACATCTACAGGT 57.803 33.333 0.00 0.00 42.92 4.00
710 845 8.410673 AGTATGTATGAACATCTACAGGTAGG 57.589 38.462 6.62 0.00 42.92 3.18
711 846 8.225416 AGTATGTATGAACATCTACAGGTAGGA 58.775 37.037 6.62 0.00 42.92 2.94
712 847 7.914427 ATGTATGAACATCTACAGGTAGGAA 57.086 36.000 6.62 0.00 42.92 3.36
713 848 7.108841 TGTATGAACATCTACAGGTAGGAAC 57.891 40.000 6.62 0.00 34.06 3.62
714 849 6.895756 TGTATGAACATCTACAGGTAGGAACT 59.104 38.462 6.62 0.00 46.37 3.01
715 850 8.057011 TGTATGAACATCTACAGGTAGGAACTA 58.943 37.037 6.62 0.00 41.75 2.24
716 851 7.589958 ATGAACATCTACAGGTAGGAACTAG 57.410 40.000 6.62 0.00 44.14 2.57
717 852 6.491383 TGAACATCTACAGGTAGGAACTAGT 58.509 40.000 6.62 0.00 44.14 2.57
718 853 7.636579 TGAACATCTACAGGTAGGAACTAGTA 58.363 38.462 0.00 0.00 44.14 1.82
719 854 8.111545 TGAACATCTACAGGTAGGAACTAGTAA 58.888 37.037 0.00 0.00 44.14 2.24
720 855 9.134055 GAACATCTACAGGTAGGAACTAGTAAT 57.866 37.037 0.00 0.00 44.14 1.89
728 863 8.858094 ACAGGTAGGAACTAGTAATATGTTAGC 58.142 37.037 0.00 0.00 44.14 3.09
729 864 9.080097 CAGGTAGGAACTAGTAATATGTTAGCT 57.920 37.037 0.00 0.00 44.14 3.32
730 865 9.080097 AGGTAGGAACTAGTAATATGTTAGCTG 57.920 37.037 0.00 0.00 44.14 4.24
731 866 8.858094 GGTAGGAACTAGTAATATGTTAGCTGT 58.142 37.037 0.00 0.00 44.14 4.40
747 882 9.950680 ATGTTAGCTGTATTTTTATTTCATCGG 57.049 29.630 0.00 0.00 0.00 4.18
748 883 8.952278 TGTTAGCTGTATTTTTATTTCATCGGT 58.048 29.630 0.00 0.00 0.00 4.69
749 884 9.221775 GTTAGCTGTATTTTTATTTCATCGGTG 57.778 33.333 0.00 0.00 0.00 4.94
750 885 7.624360 AGCTGTATTTTTATTTCATCGGTGA 57.376 32.000 0.00 0.00 0.00 4.02
751 886 8.050778 AGCTGTATTTTTATTTCATCGGTGAA 57.949 30.769 7.11 7.11 42.41 3.18
763 898 5.381174 TCATCGGTGAAATATAGGTACGG 57.619 43.478 0.00 0.00 0.00 4.02
764 899 5.072055 TCATCGGTGAAATATAGGTACGGA 58.928 41.667 0.00 0.00 0.00 4.69
765 900 4.836125 TCGGTGAAATATAGGTACGGAC 57.164 45.455 0.00 0.00 0.00 4.79
766 901 4.464008 TCGGTGAAATATAGGTACGGACT 58.536 43.478 0.00 0.00 0.00 3.85
767 902 4.516698 TCGGTGAAATATAGGTACGGACTC 59.483 45.833 0.00 0.00 0.00 3.36
768 903 4.320788 CGGTGAAATATAGGTACGGACTCC 60.321 50.000 0.00 0.00 0.00 3.85
769 904 4.021632 GGTGAAATATAGGTACGGACTCCC 60.022 50.000 0.00 0.00 0.00 4.30
770 905 4.021632 GTGAAATATAGGTACGGACTCCCC 60.022 50.000 0.00 0.00 0.00 4.81
771 906 4.140853 TGAAATATAGGTACGGACTCCCCT 60.141 45.833 0.00 0.00 0.00 4.79
772 907 2.965671 TATAGGTACGGACTCCCCTG 57.034 55.000 0.00 0.00 0.00 4.45
773 908 0.469518 ATAGGTACGGACTCCCCTGC 60.470 60.000 0.00 0.00 0.00 4.85
774 909 1.578215 TAGGTACGGACTCCCCTGCT 61.578 60.000 0.00 0.00 0.00 4.24
775 910 2.722201 GGTACGGACTCCCCTGCTG 61.722 68.421 0.00 0.00 0.00 4.41
776 911 1.681327 GTACGGACTCCCCTGCTGA 60.681 63.158 0.00 0.00 0.00 4.26
777 912 1.043673 GTACGGACTCCCCTGCTGAT 61.044 60.000 0.00 0.00 0.00 2.90
778 913 0.325296 TACGGACTCCCCTGCTGATT 60.325 55.000 0.00 0.00 0.00 2.57
779 914 1.201429 ACGGACTCCCCTGCTGATTT 61.201 55.000 0.00 0.00 0.00 2.17
780 915 0.462759 CGGACTCCCCTGCTGATTTC 60.463 60.000 0.00 0.00 0.00 2.17
781 916 0.106967 GGACTCCCCTGCTGATTTCC 60.107 60.000 0.00 0.00 0.00 3.13
782 917 0.915364 GACTCCCCTGCTGATTTCCT 59.085 55.000 0.00 0.00 0.00 3.36
783 918 1.283321 GACTCCCCTGCTGATTTCCTT 59.717 52.381 0.00 0.00 0.00 3.36
784 919 2.505819 GACTCCCCTGCTGATTTCCTTA 59.494 50.000 0.00 0.00 0.00 2.69
785 920 2.919602 ACTCCCCTGCTGATTTCCTTAA 59.080 45.455 0.00 0.00 0.00 1.85
786 921 3.054065 ACTCCCCTGCTGATTTCCTTAAG 60.054 47.826 0.00 0.00 0.00 1.85
787 922 2.242196 TCCCCTGCTGATTTCCTTAAGG 59.758 50.000 15.98 15.98 0.00 2.69
788 923 2.659428 CCCTGCTGATTTCCTTAAGGG 58.341 52.381 21.53 5.28 37.16 3.95
789 924 2.242196 CCCTGCTGATTTCCTTAAGGGA 59.758 50.000 21.53 10.56 44.84 4.20
6575 6790 4.838152 CATGACCCCGGCGTGGAG 62.838 72.222 17.19 8.17 42.00 3.86
6584 6799 2.511600 GGCGTGGAGATGGAACCG 60.512 66.667 0.00 0.00 0.00 4.44
6626 6841 4.162690 GGCGGCACTACCTGGGAG 62.163 72.222 3.79 3.79 35.61 4.30
6627 6842 4.162690 GCGGCACTACCTGGGAGG 62.163 72.222 11.44 0.24 42.49 4.30
6628 6843 2.363795 CGGCACTACCTGGGAGGA 60.364 66.667 11.44 0.00 37.67 3.71
6629 6844 2.427245 CGGCACTACCTGGGAGGAG 61.427 68.421 11.44 3.48 37.67 3.69
6630 6845 1.001760 GGCACTACCTGGGAGGAGA 59.998 63.158 11.44 0.00 37.67 3.71
6631 6846 0.399233 GGCACTACCTGGGAGGAGAT 60.399 60.000 11.44 0.00 37.67 2.75
6632 6847 1.501582 GCACTACCTGGGAGGAGATT 58.498 55.000 11.44 0.00 37.67 2.40
6633 6848 1.840635 GCACTACCTGGGAGGAGATTT 59.159 52.381 11.44 0.00 37.67 2.17
6657 6875 2.656973 GCAACGCCAACAAACCGG 60.657 61.111 0.00 0.00 0.00 5.28
6667 6885 1.064952 CAACAAACCGGCTTCGTCTTT 59.935 47.619 0.00 0.00 0.00 2.52
6669 6887 2.774687 ACAAACCGGCTTCGTCTTTAT 58.225 42.857 0.00 0.00 0.00 1.40
6671 6889 4.317488 ACAAACCGGCTTCGTCTTTATTA 58.683 39.130 0.00 0.00 0.00 0.98
6684 6902 6.551736 TCGTCTTTATTAATTCCTGCAAAGC 58.448 36.000 0.00 0.00 0.00 3.51
6687 6905 7.201350 CGTCTTTATTAATTCCTGCAAAGCAAC 60.201 37.037 0.00 0.00 38.41 4.17
6692 6910 4.612264 AATTCCTGCAAAGCAACAAGAT 57.388 36.364 0.00 0.00 38.41 2.40
6698 6916 4.866486 CCTGCAAAGCAACAAGATTTATCC 59.134 41.667 0.00 0.00 38.41 2.59
6764 6983 5.698832 TGCCTGAAACGAAACATAGAATTG 58.301 37.500 0.00 0.00 0.00 2.32
6773 6992 6.599437 ACGAAACATAGAATTGCTGTAACAC 58.401 36.000 0.00 0.00 0.00 3.32
6865 7088 3.499737 CTGGTCGTCGGCCATTGC 61.500 66.667 20.78 0.00 35.19 3.56
6884 7107 0.725784 CATTGCGTTGCGTTCCTGAC 60.726 55.000 0.00 0.00 0.00 3.51
6911 7134 2.745492 GCAGGGAGCAGTGACAGC 60.745 66.667 0.00 0.00 44.79 4.40
6926 7149 3.454573 AGCGGCGGTGAACGGATA 61.455 61.111 12.25 0.00 44.51 2.59
6991 7214 1.374758 GGAGCAGTGACAGAACCCG 60.375 63.158 0.00 0.00 0.00 5.28
7002 7225 2.742589 GACAGAACCCGAGAACAAATCC 59.257 50.000 0.00 0.00 0.00 3.01
7014 7237 6.025896 CGAGAACAAATCCATGAACAAGATG 58.974 40.000 0.00 0.00 0.00 2.90
7017 7240 6.947733 AGAACAAATCCATGAACAAGATGGTA 59.052 34.615 0.00 0.00 41.19 3.25
7072 7295 2.090658 CGAAACGAGGACGAATTCAGTG 59.909 50.000 6.22 0.00 42.66 3.66
7079 7302 1.068541 GGACGAATTCAGTGCCAAACC 60.069 52.381 6.22 0.00 0.00 3.27
7084 7307 3.610114 CGAATTCAGTGCCAAACCTCAAG 60.610 47.826 6.22 0.00 0.00 3.02
7085 7308 2.727123 TTCAGTGCCAAACCTCAAGA 57.273 45.000 0.00 0.00 0.00 3.02
7086 7309 2.957402 TCAGTGCCAAACCTCAAGAT 57.043 45.000 0.00 0.00 0.00 2.40
7087 7310 2.783135 TCAGTGCCAAACCTCAAGATC 58.217 47.619 0.00 0.00 0.00 2.75
7088 7311 1.815003 CAGTGCCAAACCTCAAGATCC 59.185 52.381 0.00 0.00 0.00 3.36
7089 7312 0.804989 GTGCCAAACCTCAAGATCCG 59.195 55.000 0.00 0.00 0.00 4.18
7090 7313 0.690192 TGCCAAACCTCAAGATCCGA 59.310 50.000 0.00 0.00 0.00 4.55
7091 7314 1.281867 TGCCAAACCTCAAGATCCGAT 59.718 47.619 0.00 0.00 0.00 4.18
7092 7315 1.672881 GCCAAACCTCAAGATCCGATG 59.327 52.381 0.00 0.00 0.00 3.84
7093 7316 1.672881 CCAAACCTCAAGATCCGATGC 59.327 52.381 0.00 0.00 0.00 3.91
7094 7317 2.358957 CAAACCTCAAGATCCGATGCA 58.641 47.619 0.00 0.00 0.00 3.96
7095 7318 2.749076 CAAACCTCAAGATCCGATGCAA 59.251 45.455 0.00 0.00 0.00 4.08
7096 7319 2.787473 ACCTCAAGATCCGATGCAAA 57.213 45.000 0.00 0.00 0.00 3.68
7097 7320 3.071874 ACCTCAAGATCCGATGCAAAA 57.928 42.857 0.00 0.00 0.00 2.44
7098 7321 3.624777 ACCTCAAGATCCGATGCAAAAT 58.375 40.909 0.00 0.00 0.00 1.82
7099 7322 4.019174 ACCTCAAGATCCGATGCAAAATT 58.981 39.130 0.00 0.00 0.00 1.82
7100 7323 4.096984 ACCTCAAGATCCGATGCAAAATTC 59.903 41.667 0.00 0.00 0.00 2.17
7101 7324 4.096833 CCTCAAGATCCGATGCAAAATTCA 59.903 41.667 0.00 0.00 0.00 2.57
7102 7325 4.985413 TCAAGATCCGATGCAAAATTCAC 58.015 39.130 0.00 0.00 0.00 3.18
7103 7326 3.680642 AGATCCGATGCAAAATTCACG 57.319 42.857 0.00 0.00 0.00 4.35
7104 7327 2.355756 AGATCCGATGCAAAATTCACGG 59.644 45.455 0.00 0.00 41.39 4.94
7107 7330 0.525761 CGATGCAAAATTCACGGGGT 59.474 50.000 0.00 0.00 0.00 4.95
7156 7380 1.234821 GGCAAATGACGGTGAACAGA 58.765 50.000 0.00 0.00 0.00 3.41
7192 7416 1.078759 CTGGTGCGTCGATCTTCACC 61.079 60.000 16.40 16.40 46.78 4.02
7193 7417 1.810030 GGTGCGTCGATCTTCACCC 60.810 63.158 13.80 0.00 42.25 4.61
7194 7418 2.158959 GTGCGTCGATCTTCACCCG 61.159 63.158 0.00 0.00 0.00 5.28
7198 7427 1.810030 GTCGATCTTCACCCGTGGC 60.810 63.158 0.00 0.00 0.00 5.01
7226 7455 1.760875 TAGCCGTCCATCTCCCACC 60.761 63.158 0.00 0.00 0.00 4.61
7233 7462 3.151710 CATCTCCCACCCGGCGTA 61.152 66.667 6.01 0.00 0.00 4.42
7271 7500 3.181516 GCAATCTTCAGCGTCGATTTCTT 60.182 43.478 0.00 0.00 0.00 2.52
7328 7557 2.347490 CCTGACAACCGACCCCTG 59.653 66.667 0.00 0.00 0.00 4.45
7341 7570 1.761198 GACCCCTGCCGAATAAGTAGT 59.239 52.381 0.00 0.00 0.00 2.73
7342 7571 2.961062 GACCCCTGCCGAATAAGTAGTA 59.039 50.000 0.00 0.00 0.00 1.82
7343 7572 2.963782 ACCCCTGCCGAATAAGTAGTAG 59.036 50.000 0.00 0.00 0.00 2.57
7349 7578 5.009710 CCTGCCGAATAAGTAGTAGATCACA 59.990 44.000 0.00 0.00 0.00 3.58
7352 7581 5.147865 CCGAATAAGTAGTAGATCACAGCG 58.852 45.833 0.00 0.00 0.00 5.18
7354 7583 6.074642 CGAATAAGTAGTAGATCACAGCGAG 58.925 44.000 0.00 0.00 0.00 5.03
7403 7632 0.455815 GCCAAACCCTAAGAATGGCG 59.544 55.000 0.00 0.00 46.11 5.69
7404 7633 0.455815 CCAAACCCTAAGAATGGCGC 59.544 55.000 0.00 0.00 0.00 6.53
7405 7634 0.455815 CAAACCCTAAGAATGGCGCC 59.544 55.000 22.73 22.73 0.00 6.53
7406 7635 1.029947 AAACCCTAAGAATGGCGCCG 61.030 55.000 23.90 6.26 0.00 6.46
7407 7636 1.906105 AACCCTAAGAATGGCGCCGA 61.906 55.000 23.90 11.80 0.00 5.54
7408 7637 1.887707 CCCTAAGAATGGCGCCGAC 60.888 63.158 23.90 15.39 0.00 4.79
7409 7638 1.887707 CCTAAGAATGGCGCCGACC 60.888 63.158 23.90 12.89 0.00 4.79
7410 7639 1.153449 CTAAGAATGGCGCCGACCA 60.153 57.895 23.90 3.74 45.82 4.02
7445 7674 2.764128 GGATCCAGGTCGAGGGCA 60.764 66.667 6.95 0.00 0.00 5.36
7446 7675 2.367202 GGATCCAGGTCGAGGGCAA 61.367 63.158 6.95 0.00 0.00 4.52
7449 7678 2.822643 ATCCAGGTCGAGGGCAAGGA 62.823 60.000 0.00 0.00 0.00 3.36
7500 7729 4.426313 GGGAGGCCCAACCGGAAG 62.426 72.222 9.46 0.00 44.65 3.46
7502 7731 4.035102 GAGGCCCAACCGGAAGCT 62.035 66.667 9.46 0.00 46.52 3.74
7503 7732 4.351054 AGGCCCAACCGGAAGCTG 62.351 66.667 9.46 0.00 46.52 4.24
7526 7755 3.570638 CCATCGCAGCGAGGCAAG 61.571 66.667 23.76 6.87 39.91 4.01
7527 7756 2.510012 CATCGCAGCGAGGCAAGA 60.510 61.111 24.08 0.00 39.91 3.02
7528 7757 2.202851 ATCGCAGCGAGGCAAGAG 60.203 61.111 24.08 0.00 39.91 2.85
7529 7758 3.729965 ATCGCAGCGAGGCAAGAGG 62.730 63.158 24.08 0.00 39.91 3.69
7530 7759 4.441695 CGCAGCGAGGCAAGAGGA 62.442 66.667 9.98 0.00 0.00 3.71
7531 7760 2.511145 GCAGCGAGGCAAGAGGAG 60.511 66.667 0.00 0.00 0.00 3.69
7532 7761 3.011635 GCAGCGAGGCAAGAGGAGA 62.012 63.158 0.00 0.00 0.00 3.71
7533 7762 1.141449 CAGCGAGGCAAGAGGAGAG 59.859 63.158 0.00 0.00 0.00 3.20
7534 7763 2.202864 GCGAGGCAAGAGGAGAGC 60.203 66.667 0.00 0.00 0.00 4.09
7559 7788 4.819761 GAGCCGTCGCCATCAGCA 62.820 66.667 0.00 0.00 44.04 4.41
7560 7789 4.166888 AGCCGTCGCCATCAGCAT 62.167 61.111 0.00 0.00 44.04 3.79
7561 7790 3.643978 GCCGTCGCCATCAGCATC 61.644 66.667 0.00 0.00 44.04 3.91
7562 7791 2.202919 CCGTCGCCATCAGCATCA 60.203 61.111 0.00 0.00 44.04 3.07
7563 7792 2.528743 CCGTCGCCATCAGCATCAC 61.529 63.158 0.00 0.00 44.04 3.06
7564 7793 1.810853 CGTCGCCATCAGCATCACA 60.811 57.895 0.00 0.00 44.04 3.58
7565 7794 1.156034 CGTCGCCATCAGCATCACAT 61.156 55.000 0.00 0.00 44.04 3.21
7566 7795 0.585357 GTCGCCATCAGCATCACATC 59.415 55.000 0.00 0.00 44.04 3.06
7567 7796 0.178533 TCGCCATCAGCATCACATCA 59.821 50.000 0.00 0.00 44.04 3.07
7568 7797 0.306840 CGCCATCAGCATCACATCAC 59.693 55.000 0.00 0.00 44.04 3.06
7569 7798 1.385528 GCCATCAGCATCACATCACA 58.614 50.000 0.00 0.00 42.97 3.58
7570 7799 1.333931 GCCATCAGCATCACATCACAG 59.666 52.381 0.00 0.00 42.97 3.66
7571 7800 1.333931 CCATCAGCATCACATCACAGC 59.666 52.381 0.00 0.00 0.00 4.40
7572 7801 1.003866 CATCAGCATCACATCACAGCG 60.004 52.381 0.00 0.00 0.00 5.18
7573 7802 0.741927 TCAGCATCACATCACAGCGG 60.742 55.000 0.00 0.00 0.00 5.52
7574 7803 2.110967 AGCATCACATCACAGCGGC 61.111 57.895 0.00 0.00 0.00 6.53
7575 7804 2.705220 CATCACATCACAGCGGCG 59.295 61.111 0.51 0.51 0.00 6.46
7576 7805 1.810853 CATCACATCACAGCGGCGA 60.811 57.895 12.98 0.00 0.00 5.54
7577 7806 1.811266 ATCACATCACAGCGGCGAC 60.811 57.895 12.98 1.23 0.00 5.19
7589 7818 3.169198 GGCGACGCAAGAGGAAAG 58.831 61.111 23.09 0.00 43.62 2.62
7590 7819 2.476499 GCGACGCAAGAGGAAAGC 59.524 61.111 16.42 0.00 43.62 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 2.368439 GGCATGATGTTCCACTAAGCA 58.632 47.619 0.00 0.00 0.00 3.91
42 43 1.678101 GGGCATGATGTTCCACTAAGC 59.322 52.381 0.00 0.00 0.00 3.09
47 48 2.120909 CCCGGGCATGATGTTCCAC 61.121 63.158 8.08 0.00 0.00 4.02
56 57 3.406595 GAGGTTCTCCCCGGGCATG 62.407 68.421 17.73 7.16 0.00 4.06
60 61 0.983378 AATCAGAGGTTCTCCCCGGG 60.983 60.000 15.80 15.80 0.00 5.73
62 63 1.410882 GAGAATCAGAGGTTCTCCCCG 59.589 57.143 8.48 0.00 43.59 5.73
77 82 4.318332 TCTTGCAACTCGAACATGAGAAT 58.682 39.130 0.00 0.00 39.35 2.40
78 83 3.727726 TCTTGCAACTCGAACATGAGAA 58.272 40.909 0.00 0.00 39.35 2.87
83 88 8.213518 ACATATATTTCTTGCAACTCGAACAT 57.786 30.769 0.00 0.00 0.00 2.71
98 103 8.301730 TCGACCGAACCATTTACATATATTTC 57.698 34.615 0.00 0.00 0.00 2.17
99 104 8.665643 TTCGACCGAACCATTTACATATATTT 57.334 30.769 0.18 0.00 0.00 1.40
104 109 4.330620 GCTTTCGACCGAACCATTTACATA 59.669 41.667 4.17 0.00 33.41 2.29
129 134 3.808726 TGCCTGATTTTGCAATGAAACAC 59.191 39.130 0.00 0.00 33.87 3.32
132 137 4.059511 CACTGCCTGATTTTGCAATGAAA 58.940 39.130 0.00 0.00 36.89 2.69
172 177 3.962718 CCATAAGCTGTCCATTCCCATTT 59.037 43.478 0.00 0.00 0.00 2.32
185 190 0.754472 CAATTGGGCCCCATAAGCTG 59.246 55.000 22.27 4.96 31.53 4.24
186 191 1.050421 GCAATTGGGCCCCATAAGCT 61.050 55.000 22.27 0.00 31.53 3.74
189 194 0.690411 CCAGCAATTGGGCCCCATAA 60.690 55.000 22.27 7.56 43.75 1.90
223 229 5.943416 ACAGCACAAATATGGCTAAACACTA 59.057 36.000 0.00 0.00 33.51 2.74
231 237 5.439721 TCTAATGACAGCACAAATATGGCT 58.560 37.500 0.00 0.00 34.63 4.75
260 393 2.213499 AGTCGCAGGAAACACAAAGAG 58.787 47.619 0.00 0.00 0.00 2.85
262 395 1.264288 GGAGTCGCAGGAAACACAAAG 59.736 52.381 0.00 0.00 0.00 2.77
279 412 4.589216 TCAACAATTGCCAAAAGAGGAG 57.411 40.909 5.05 0.00 0.00 3.69
330 464 7.556844 TCCTATTTCCTAGCTGTAGAAGTTTG 58.443 38.462 0.00 0.00 0.00 2.93
331 465 7.735326 TCCTATTTCCTAGCTGTAGAAGTTT 57.265 36.000 0.00 0.00 0.00 2.66
335 469 8.834004 TTAGTTCCTATTTCCTAGCTGTAGAA 57.166 34.615 0.00 0.00 0.00 2.10
350 484 7.796054 ACACAGCTCAACATATTAGTTCCTAT 58.204 34.615 0.00 0.00 0.00 2.57
359 493 9.979578 TGAAATAAAAACACAGCTCAACATATT 57.020 25.926 0.00 0.00 0.00 1.28
362 496 7.326789 CGATGAAATAAAAACACAGCTCAACAT 59.673 33.333 0.00 0.00 0.00 2.71
363 497 6.636447 CGATGAAATAAAAACACAGCTCAACA 59.364 34.615 0.00 0.00 0.00 3.33
364 498 6.855914 TCGATGAAATAAAAACACAGCTCAAC 59.144 34.615 0.00 0.00 0.00 3.18
365 499 6.964908 TCGATGAAATAAAAACACAGCTCAA 58.035 32.000 0.00 0.00 0.00 3.02
366 500 6.552859 TCGATGAAATAAAAACACAGCTCA 57.447 33.333 0.00 0.00 0.00 4.26
367 501 7.243487 TCATCGATGAAATAAAAACACAGCTC 58.757 34.615 25.44 0.00 33.08 4.09
477 612 6.840780 AACTGTAAGATAAGGCAGCAATTT 57.159 33.333 0.00 0.00 37.43 1.82
478 613 6.840780 AAACTGTAAGATAAGGCAGCAATT 57.159 33.333 0.00 0.00 37.43 2.32
483 618 9.601217 ACTGTATAAAACTGTAAGATAAGGCAG 57.399 33.333 0.00 0.00 38.38 4.85
508 643 2.103094 TCTGGCAGGTGCAGTCATATAC 59.897 50.000 15.73 0.00 44.36 1.47
513 648 0.535780 CTTTCTGGCAGGTGCAGTCA 60.536 55.000 15.73 0.00 44.36 3.41
514 649 1.860484 GCTTTCTGGCAGGTGCAGTC 61.860 60.000 15.73 0.00 44.36 3.51
515 650 1.900498 GCTTTCTGGCAGGTGCAGT 60.900 57.895 15.73 0.00 44.36 4.40
517 652 1.228644 ATGCTTTCTGGCAGGTGCA 60.229 52.632 23.69 23.69 45.75 4.57
518 653 1.214589 CATGCTTTCTGGCAGGTGC 59.785 57.895 15.73 16.05 45.75 5.01
522 657 3.603532 TCTAGAACATGCTTTCTGGCAG 58.396 45.455 8.58 8.58 45.75 4.85
524 659 4.880696 AGAATCTAGAACATGCTTTCTGGC 59.119 41.667 8.46 0.00 36.48 4.85
525 660 6.822676 AGAAGAATCTAGAACATGCTTTCTGG 59.177 38.462 8.46 6.08 36.48 3.86
526 661 7.765360 AGAGAAGAATCTAGAACATGCTTTCTG 59.235 37.037 8.46 0.90 36.48 3.02
528 663 8.491331 AAGAGAAGAATCTAGAACATGCTTTC 57.509 34.615 0.00 0.00 35.54 2.62
529 664 8.728833 CAAAGAGAAGAATCTAGAACATGCTTT 58.271 33.333 0.00 0.00 35.54 3.51
530 665 7.336427 CCAAAGAGAAGAATCTAGAACATGCTT 59.664 37.037 0.00 0.00 35.54 3.91
534 669 7.826744 GGTTCCAAAGAGAAGAATCTAGAACAT 59.173 37.037 0.00 0.00 36.57 2.71
535 670 7.016661 AGGTTCCAAAGAGAAGAATCTAGAACA 59.983 37.037 0.00 0.00 36.57 3.18
536 671 7.390823 AGGTTCCAAAGAGAAGAATCTAGAAC 58.609 38.462 0.00 0.00 35.54 3.01
537 672 7.560796 AGGTTCCAAAGAGAAGAATCTAGAA 57.439 36.000 0.00 0.00 35.54 2.10
538 673 7.674348 TGTAGGTTCCAAAGAGAAGAATCTAGA 59.326 37.037 0.00 0.00 34.68 2.43
541 676 6.688073 TGTAGGTTCCAAAGAGAAGAATCT 57.312 37.500 0.00 0.00 39.10 2.40
542 677 6.372937 CCTTGTAGGTTCCAAAGAGAAGAATC 59.627 42.308 0.00 0.00 0.00 2.52
544 679 5.621193 CCTTGTAGGTTCCAAAGAGAAGAA 58.379 41.667 0.00 0.00 0.00 2.52
545 680 5.228945 CCTTGTAGGTTCCAAAGAGAAGA 57.771 43.478 0.00 0.00 0.00 2.87
560 695 3.449746 TTCCCATTTCCCACCTTGTAG 57.550 47.619 0.00 0.00 0.00 2.74
563 698 1.832998 CCATTCCCATTTCCCACCTTG 59.167 52.381 0.00 0.00 0.00 3.61
564 699 1.721691 TCCATTCCCATTTCCCACCTT 59.278 47.619 0.00 0.00 0.00 3.50
565 700 1.392407 TCCATTCCCATTTCCCACCT 58.608 50.000 0.00 0.00 0.00 4.00
566 701 2.435437 CAATCCATTCCCATTTCCCACC 59.565 50.000 0.00 0.00 0.00 4.61
567 702 2.158914 GCAATCCATTCCCATTTCCCAC 60.159 50.000 0.00 0.00 0.00 4.61
568 703 2.117865 GCAATCCATTCCCATTTCCCA 58.882 47.619 0.00 0.00 0.00 4.37
569 704 2.117865 TGCAATCCATTCCCATTTCCC 58.882 47.619 0.00 0.00 0.00 3.97
571 706 5.484715 CCATATGCAATCCATTCCCATTTC 58.515 41.667 0.00 0.00 35.34 2.17
572 707 4.287585 CCCATATGCAATCCATTCCCATTT 59.712 41.667 0.00 0.00 35.34 2.32
574 709 3.446968 CCCATATGCAATCCATTCCCAT 58.553 45.455 0.00 0.00 35.34 4.00
575 710 2.493126 CCCCATATGCAATCCATTCCCA 60.493 50.000 0.00 0.00 35.34 4.37
576 711 2.181975 CCCCATATGCAATCCATTCCC 58.818 52.381 0.00 0.00 35.34 3.97
577 712 1.551883 GCCCCATATGCAATCCATTCC 59.448 52.381 0.00 0.00 35.34 3.01
578 713 1.551883 GGCCCCATATGCAATCCATTC 59.448 52.381 0.00 0.00 35.34 2.67
580 715 0.488220 TGGCCCCATATGCAATCCAT 59.512 50.000 0.00 0.00 37.97 3.41
582 717 1.648116 ATTGGCCCCATATGCAATCC 58.352 50.000 0.00 0.00 0.00 3.01
584 719 2.778850 ACAAATTGGCCCCATATGCAAT 59.221 40.909 0.00 0.00 0.00 3.56
588 723 1.764134 AGCACAAATTGGCCCCATATG 59.236 47.619 0.00 0.00 0.00 1.78
589 724 1.764134 CAGCACAAATTGGCCCCATAT 59.236 47.619 0.00 0.00 0.00 1.78
591 726 0.837260 ACAGCACAAATTGGCCCCAT 60.837 50.000 0.00 0.00 0.00 4.00
593 728 1.293179 GACAGCACAAATTGGCCCC 59.707 57.895 0.00 0.00 0.00 5.80
594 729 0.609662 ATGACAGCACAAATTGGCCC 59.390 50.000 0.00 0.00 0.00 5.80
595 730 2.460757 AATGACAGCACAAATTGGCC 57.539 45.000 0.00 0.00 0.00 5.36
596 731 3.911868 TGTAATGACAGCACAAATTGGC 58.088 40.909 0.00 0.00 0.00 4.52
612 747 5.506649 GGAAACACAAACACGGACATGTAAT 60.507 40.000 0.00 0.00 30.75 1.89
613 748 4.201930 GGAAACACAAACACGGACATGTAA 60.202 41.667 0.00 0.00 30.75 2.41
614 749 3.312973 GGAAACACAAACACGGACATGTA 59.687 43.478 0.00 0.00 30.75 2.29
615 750 2.098443 GGAAACACAAACACGGACATGT 59.902 45.455 0.00 0.00 0.00 3.21
616 751 2.357637 AGGAAACACAAACACGGACATG 59.642 45.455 0.00 0.00 0.00 3.21
617 752 2.616842 GAGGAAACACAAACACGGACAT 59.383 45.455 0.00 0.00 0.00 3.06
618 753 2.011222 GAGGAAACACAAACACGGACA 58.989 47.619 0.00 0.00 0.00 4.02
619 754 1.332686 GGAGGAAACACAAACACGGAC 59.667 52.381 0.00 0.00 0.00 4.79
620 755 1.670791 GGAGGAAACACAAACACGGA 58.329 50.000 0.00 0.00 0.00 4.69
621 756 0.306533 CGGAGGAAACACAAACACGG 59.693 55.000 0.00 0.00 0.00 4.94
622 757 1.292061 TCGGAGGAAACACAAACACG 58.708 50.000 0.00 0.00 0.00 4.49
623 758 3.304458 GGATTCGGAGGAAACACAAACAC 60.304 47.826 0.00 0.00 35.40 3.32
624 759 2.882137 GGATTCGGAGGAAACACAAACA 59.118 45.455 0.00 0.00 35.40 2.83
625 760 3.146847 AGGATTCGGAGGAAACACAAAC 58.853 45.455 0.00 0.00 35.40 2.93
626 761 3.072476 AGAGGATTCGGAGGAAACACAAA 59.928 43.478 0.00 0.00 35.40 2.83
627 762 2.637872 AGAGGATTCGGAGGAAACACAA 59.362 45.455 0.00 0.00 35.40 3.33
628 763 2.257207 AGAGGATTCGGAGGAAACACA 58.743 47.619 0.00 0.00 35.40 3.72
629 764 3.336138 AAGAGGATTCGGAGGAAACAC 57.664 47.619 0.00 0.00 35.40 3.32
630 765 4.072131 CAAAAGAGGATTCGGAGGAAACA 58.928 43.478 0.00 0.00 35.40 2.83
631 766 3.440522 CCAAAAGAGGATTCGGAGGAAAC 59.559 47.826 0.00 0.00 35.40 2.78
632 767 3.686016 CCAAAAGAGGATTCGGAGGAAA 58.314 45.455 0.00 0.00 35.40 3.13
633 768 2.618045 GCCAAAAGAGGATTCGGAGGAA 60.618 50.000 0.00 0.00 36.41 3.36
634 769 1.065418 GCCAAAAGAGGATTCGGAGGA 60.065 52.381 0.00 0.00 0.00 3.71
635 770 1.340017 TGCCAAAAGAGGATTCGGAGG 60.340 52.381 0.00 0.00 0.00 4.30
636 771 2.113860 TGCCAAAAGAGGATTCGGAG 57.886 50.000 0.00 0.00 0.00 4.63
637 772 2.577606 TTGCCAAAAGAGGATTCGGA 57.422 45.000 0.00 0.00 0.00 4.55
638 773 3.514645 CAATTGCCAAAAGAGGATTCGG 58.485 45.455 0.00 0.00 0.00 4.30
639 774 2.925563 GCAATTGCCAAAAGAGGATTCG 59.074 45.455 20.06 0.00 34.31 3.34
640 775 3.930848 CAGCAATTGCCAAAAGAGGATTC 59.069 43.478 26.45 0.00 43.38 2.52
641 776 3.579586 TCAGCAATTGCCAAAAGAGGATT 59.420 39.130 26.45 0.38 43.38 3.01
642 777 3.167485 TCAGCAATTGCCAAAAGAGGAT 58.833 40.909 26.45 0.94 43.38 3.24
643 778 2.596346 TCAGCAATTGCCAAAAGAGGA 58.404 42.857 26.45 8.79 43.38 3.71
644 779 3.604875 ATCAGCAATTGCCAAAAGAGG 57.395 42.857 26.45 6.70 43.38 3.69
645 780 4.921470 CAATCAGCAATTGCCAAAAGAG 57.079 40.909 26.45 7.56 43.38 2.85
661 796 4.392047 ACATGCTGAACTGAAGACAATCA 58.608 39.130 0.00 0.00 0.00 2.57
662 797 5.368256 AACATGCTGAACTGAAGACAATC 57.632 39.130 0.00 0.00 0.00 2.67
663 798 6.000219 ACTAACATGCTGAACTGAAGACAAT 59.000 36.000 0.00 0.00 0.00 2.71
664 799 5.368145 ACTAACATGCTGAACTGAAGACAA 58.632 37.500 0.00 0.00 0.00 3.18
665 800 4.960938 ACTAACATGCTGAACTGAAGACA 58.039 39.130 0.00 0.00 0.00 3.41
666 801 6.591834 ACATACTAACATGCTGAACTGAAGAC 59.408 38.462 0.00 0.00 0.00 3.01
667 802 6.701340 ACATACTAACATGCTGAACTGAAGA 58.299 36.000 0.00 0.00 0.00 2.87
668 803 6.974932 ACATACTAACATGCTGAACTGAAG 57.025 37.500 0.00 0.00 0.00 3.02
669 804 8.257306 TCATACATACTAACATGCTGAACTGAA 58.743 33.333 0.00 0.00 0.00 3.02
670 805 7.781056 TCATACATACTAACATGCTGAACTGA 58.219 34.615 0.00 0.00 0.00 3.41
671 806 8.331022 GTTCATACATACTAACATGCTGAACTG 58.669 37.037 16.76 0.00 42.09 3.16
672 807 8.040727 TGTTCATACATACTAACATGCTGAACT 58.959 33.333 20.73 0.00 43.61 3.01
673 808 8.196802 TGTTCATACATACTAACATGCTGAAC 57.803 34.615 16.99 16.99 43.57 3.18
674 809 8.962884 ATGTTCATACATACTAACATGCTGAA 57.037 30.769 0.00 0.00 43.12 3.02
675 810 8.424133 AGATGTTCATACATACTAACATGCTGA 58.576 33.333 4.41 0.00 44.90 4.26
676 811 8.599055 AGATGTTCATACATACTAACATGCTG 57.401 34.615 4.41 0.00 44.90 4.41
677 812 9.698309 GTAGATGTTCATACATACTAACATGCT 57.302 33.333 4.41 4.89 44.90 3.79
678 813 9.476202 TGTAGATGTTCATACATACTAACATGC 57.524 33.333 4.41 0.00 44.90 4.06
681 816 9.197306 ACCTGTAGATGTTCATACATACTAACA 57.803 33.333 0.00 0.00 44.90 2.41
684 819 9.516546 CCTACCTGTAGATGTTCATACATACTA 57.483 37.037 5.89 0.00 44.90 1.82
685 820 8.225416 TCCTACCTGTAGATGTTCATACATACT 58.775 37.037 5.89 0.00 44.90 2.12
686 821 8.405418 TCCTACCTGTAGATGTTCATACATAC 57.595 38.462 5.89 0.00 44.90 2.39
687 822 8.857098 GTTCCTACCTGTAGATGTTCATACATA 58.143 37.037 5.89 0.00 44.90 2.29
689 824 6.895756 AGTTCCTACCTGTAGATGTTCATACA 59.104 38.462 5.89 0.00 38.95 2.29
690 825 7.349412 AGTTCCTACCTGTAGATGTTCATAC 57.651 40.000 5.89 0.00 35.21 2.39
691 826 8.280084 ACTAGTTCCTACCTGTAGATGTTCATA 58.720 37.037 5.89 0.00 35.21 2.15
692 827 7.126733 ACTAGTTCCTACCTGTAGATGTTCAT 58.873 38.462 5.89 0.00 35.21 2.57
693 828 6.491383 ACTAGTTCCTACCTGTAGATGTTCA 58.509 40.000 5.89 0.00 35.21 3.18
694 829 8.517062 TTACTAGTTCCTACCTGTAGATGTTC 57.483 38.462 0.00 0.00 35.21 3.18
702 837 8.858094 GCTAACATATTACTAGTTCCTACCTGT 58.142 37.037 0.00 0.00 0.00 4.00
703 838 9.080097 AGCTAACATATTACTAGTTCCTACCTG 57.920 37.037 0.00 0.00 0.00 4.00
704 839 9.080097 CAGCTAACATATTACTAGTTCCTACCT 57.920 37.037 0.00 0.00 0.00 3.08
705 840 8.858094 ACAGCTAACATATTACTAGTTCCTACC 58.142 37.037 0.00 0.00 0.00 3.18
721 856 9.950680 CCGATGAAATAAAAATACAGCTAACAT 57.049 29.630 0.00 0.00 0.00 2.71
722 857 8.952278 ACCGATGAAATAAAAATACAGCTAACA 58.048 29.630 0.00 0.00 0.00 2.41
723 858 9.221775 CACCGATGAAATAAAAATACAGCTAAC 57.778 33.333 0.00 0.00 0.00 2.34
724 859 9.168451 TCACCGATGAAATAAAAATACAGCTAA 57.832 29.630 0.00 0.00 0.00 3.09
725 860 8.725405 TCACCGATGAAATAAAAATACAGCTA 57.275 30.769 0.00 0.00 0.00 3.32
726 861 7.624360 TCACCGATGAAATAAAAATACAGCT 57.376 32.000 0.00 0.00 0.00 4.24
740 875 5.535783 TCCGTACCTATATTTCACCGATGAA 59.464 40.000 0.00 0.00 43.28 2.57
741 876 5.048504 GTCCGTACCTATATTTCACCGATGA 60.049 44.000 0.00 0.00 0.00 2.92
742 877 5.048224 AGTCCGTACCTATATTTCACCGATG 60.048 44.000 0.00 0.00 0.00 3.84
743 878 5.075493 AGTCCGTACCTATATTTCACCGAT 58.925 41.667 0.00 0.00 0.00 4.18
744 879 4.464008 AGTCCGTACCTATATTTCACCGA 58.536 43.478 0.00 0.00 0.00 4.69
745 880 4.320788 GGAGTCCGTACCTATATTTCACCG 60.321 50.000 0.00 0.00 0.00 4.94
746 881 4.021632 GGGAGTCCGTACCTATATTTCACC 60.022 50.000 2.26 0.00 0.00 4.02
747 882 4.021632 GGGGAGTCCGTACCTATATTTCAC 60.022 50.000 2.26 0.00 0.00 3.18
748 883 4.140853 AGGGGAGTCCGTACCTATATTTCA 60.141 45.833 2.26 0.00 41.52 2.69
749 884 4.220163 CAGGGGAGTCCGTACCTATATTTC 59.780 50.000 2.26 0.00 41.52 2.17
750 885 4.158015 CAGGGGAGTCCGTACCTATATTT 58.842 47.826 2.26 0.00 41.52 1.40
751 886 3.775910 CAGGGGAGTCCGTACCTATATT 58.224 50.000 2.26 0.00 41.52 1.28
752 887 2.557005 GCAGGGGAGTCCGTACCTATAT 60.557 54.545 2.26 0.00 41.52 0.86
753 888 1.202976 GCAGGGGAGTCCGTACCTATA 60.203 57.143 2.26 0.00 41.52 1.31
754 889 0.469518 GCAGGGGAGTCCGTACCTAT 60.470 60.000 2.26 0.00 41.52 2.57
755 890 1.076485 GCAGGGGAGTCCGTACCTA 60.076 63.158 2.26 0.00 41.52 3.08
756 891 2.363925 GCAGGGGAGTCCGTACCT 60.364 66.667 2.26 0.87 41.52 3.08
757 892 2.363925 AGCAGGGGAGTCCGTACC 60.364 66.667 2.26 0.00 41.52 3.34
758 893 1.043673 ATCAGCAGGGGAGTCCGTAC 61.044 60.000 2.26 0.00 41.52 3.67
759 894 0.325296 AATCAGCAGGGGAGTCCGTA 60.325 55.000 2.26 0.00 41.52 4.02
760 895 1.201429 AAATCAGCAGGGGAGTCCGT 61.201 55.000 2.26 0.00 41.52 4.69
761 896 0.462759 GAAATCAGCAGGGGAGTCCG 60.463 60.000 2.26 0.00 41.52 4.79
762 897 0.106967 GGAAATCAGCAGGGGAGTCC 60.107 60.000 0.00 0.00 0.00 3.85
763 898 0.915364 AGGAAATCAGCAGGGGAGTC 59.085 55.000 0.00 0.00 0.00 3.36
764 899 1.376649 AAGGAAATCAGCAGGGGAGT 58.623 50.000 0.00 0.00 0.00 3.85
765 900 3.549794 CTTAAGGAAATCAGCAGGGGAG 58.450 50.000 0.00 0.00 0.00 4.30
766 901 2.242196 CCTTAAGGAAATCAGCAGGGGA 59.758 50.000 17.21 0.00 37.39 4.81
767 902 2.659428 CCTTAAGGAAATCAGCAGGGG 58.341 52.381 17.21 0.00 37.39 4.79
768 903 2.242196 TCCCTTAAGGAAATCAGCAGGG 59.758 50.000 23.74 1.92 43.78 4.45
769 904 3.652057 TCCCTTAAGGAAATCAGCAGG 57.348 47.619 23.74 1.91 43.78 4.85
791 926 8.063200 TCAATCATGATCAGAAGCTCATTTTT 57.937 30.769 9.06 0.00 28.55 1.94
792 927 7.640597 TCAATCATGATCAGAAGCTCATTTT 57.359 32.000 9.06 0.00 28.55 1.82
793 928 7.502561 TCATCAATCATGATCAGAAGCTCATTT 59.497 33.333 9.06 0.00 44.53 2.32
794 929 6.998673 TCATCAATCATGATCAGAAGCTCATT 59.001 34.615 9.06 0.00 44.53 2.57
795 930 6.534634 TCATCAATCATGATCAGAAGCTCAT 58.465 36.000 9.06 0.00 44.53 2.90
796 931 5.925509 TCATCAATCATGATCAGAAGCTCA 58.074 37.500 9.06 0.00 44.53 4.26
807 942 7.724951 TGGTATAAAGCCAATCATCAATCATGA 59.275 33.333 0.00 0.00 46.01 3.07
808 943 7.888424 TGGTATAAAGCCAATCATCAATCATG 58.112 34.615 0.00 0.00 32.29 3.07
809 944 8.660295 ATGGTATAAAGCCAATCATCAATCAT 57.340 30.769 0.00 0.00 39.72 2.45
810 945 7.094677 CGATGGTATAAAGCCAATCATCAATCA 60.095 37.037 0.00 0.00 39.72 2.57
811 946 7.246311 CGATGGTATAAAGCCAATCATCAATC 58.754 38.462 0.00 0.00 39.72 2.67
812 947 6.349611 GCGATGGTATAAAGCCAATCATCAAT 60.350 38.462 0.00 0.00 39.72 2.57
827 962 7.497579 ACATAAAGACAACAATGCGATGGTATA 59.502 33.333 0.00 0.00 0.00 1.47
6575 6790 2.100631 CGGTCAGTGCGGTTCCATC 61.101 63.158 0.00 0.00 0.00 3.51
6613 6828 1.501582 AATCTCCTCCCAGGTAGTGC 58.498 55.000 0.00 0.00 36.53 4.40
6617 6832 1.559682 GTGCAAATCTCCTCCCAGGTA 59.440 52.381 0.00 0.00 36.53 3.08
6618 6833 0.329596 GTGCAAATCTCCTCCCAGGT 59.670 55.000 0.00 0.00 36.53 4.00
6620 6835 0.745845 CGGTGCAAATCTCCTCCCAG 60.746 60.000 0.00 0.00 0.00 4.45
6621 6836 1.299648 CGGTGCAAATCTCCTCCCA 59.700 57.895 0.00 0.00 0.00 4.37
6622 6837 1.452108 CCGGTGCAAATCTCCTCCC 60.452 63.158 0.00 0.00 0.00 4.30
6623 6838 2.115291 GCCGGTGCAAATCTCCTCC 61.115 63.158 1.90 0.00 37.47 4.30
6624 6839 1.377202 TGCCGGTGCAAATCTCCTC 60.377 57.895 1.90 0.00 46.66 3.71
6625 6840 2.756400 TGCCGGTGCAAATCTCCT 59.244 55.556 1.90 0.00 46.66 3.69
6646 6861 1.164041 AGACGAAGCCGGTTTGTTGG 61.164 55.000 8.82 0.00 40.78 3.77
6655 6873 5.738370 CAGGAATTAATAAAGACGAAGCCG 58.262 41.667 0.00 0.00 42.50 5.52
6657 6875 6.119144 TGCAGGAATTAATAAAGACGAAGC 57.881 37.500 0.00 0.00 0.00 3.86
6667 6885 7.225784 TCTTGTTGCTTTGCAGGAATTAATA 57.774 32.000 0.00 0.00 40.61 0.98
6669 6887 5.528043 TCTTGTTGCTTTGCAGGAATTAA 57.472 34.783 0.00 0.00 40.61 1.40
6671 6889 4.612264 ATCTTGTTGCTTTGCAGGAATT 57.388 36.364 0.00 0.00 40.61 2.17
6684 6902 6.668323 ACACAAGTTCGGATAAATCTTGTTG 58.332 36.000 6.19 5.60 43.68 3.33
6687 6905 7.974675 ACATACACAAGTTCGGATAAATCTTG 58.025 34.615 0.00 0.00 40.54 3.02
6735 6953 1.264288 GTTTCGTTTCAGGCAGAGGTG 59.736 52.381 0.00 0.00 0.00 4.00
6764 6983 3.326747 ACGGAGAATTCTGTGTTACAGC 58.673 45.455 14.00 0.00 45.54 4.40
6773 6992 0.804989 GGCAACCACGGAGAATTCTG 59.195 55.000 14.00 1.55 35.72 3.02
6775 6994 1.087501 GAGGCAACCACGGAGAATTC 58.912 55.000 0.00 0.00 37.17 2.17
6822 7041 3.586174 AGATCACAGGTCATATCCCCATG 59.414 47.826 0.00 0.00 0.00 3.66
6865 7088 0.725784 GTCAGGAACGCAACGCAATG 60.726 55.000 0.00 0.00 0.00 2.82
6884 7107 2.818714 CTCCCTGCTTCTGCTGCG 60.819 66.667 0.00 0.00 40.48 5.18
6911 7134 2.952783 CGTATCCGTTCACCGCCG 60.953 66.667 0.00 0.00 34.38 6.46
6969 7192 0.952984 GTTCTGTCACTGCTCCCTGC 60.953 60.000 0.00 0.00 43.25 4.85
6970 7193 0.321122 GGTTCTGTCACTGCTCCCTG 60.321 60.000 0.00 0.00 0.00 4.45
6991 7214 6.071728 ACCATCTTGTTCATGGATTTGTTCTC 60.072 38.462 5.70 0.00 43.32 2.87
7035 7258 3.168193 GTTTCGGTGCCAATTTGTATCG 58.832 45.455 0.00 0.00 0.00 2.92
7036 7259 3.120130 TCGTTTCGGTGCCAATTTGTATC 60.120 43.478 0.00 0.00 0.00 2.24
7072 7295 1.672881 CATCGGATCTTGAGGTTTGGC 59.327 52.381 0.00 0.00 0.00 4.52
7079 7302 5.032863 GTGAATTTTGCATCGGATCTTGAG 58.967 41.667 0.00 0.00 0.00 3.02
7084 7307 2.541588 CCCGTGAATTTTGCATCGGATC 60.542 50.000 0.00 0.00 40.29 3.36
7085 7308 1.405105 CCCGTGAATTTTGCATCGGAT 59.595 47.619 0.00 0.00 40.29 4.18
7086 7309 0.808125 CCCGTGAATTTTGCATCGGA 59.192 50.000 0.00 0.00 40.29 4.55
7087 7310 0.179140 CCCCGTGAATTTTGCATCGG 60.179 55.000 0.00 0.00 38.05 4.18
7088 7311 0.525761 ACCCCGTGAATTTTGCATCG 59.474 50.000 0.00 0.00 0.00 3.84
7089 7312 2.606108 GAACCCCGTGAATTTTGCATC 58.394 47.619 0.00 0.00 0.00 3.91
7090 7313 1.067915 CGAACCCCGTGAATTTTGCAT 60.068 47.619 0.00 0.00 0.00 3.96
7091 7314 0.312416 CGAACCCCGTGAATTTTGCA 59.688 50.000 0.00 0.00 0.00 4.08
7092 7315 0.594110 TCGAACCCCGTGAATTTTGC 59.406 50.000 0.00 0.00 39.75 3.68
7093 7316 2.606065 GGTTCGAACCCCGTGAATTTTG 60.606 50.000 33.02 0.00 43.43 2.44
7094 7317 1.610038 GGTTCGAACCCCGTGAATTTT 59.390 47.619 33.02 0.00 43.43 1.82
7095 7318 1.241165 GGTTCGAACCCCGTGAATTT 58.759 50.000 33.02 0.00 43.43 1.82
7096 7319 2.936928 GGTTCGAACCCCGTGAATT 58.063 52.632 33.02 0.00 43.43 2.17
7097 7320 4.707791 GGTTCGAACCCCGTGAAT 57.292 55.556 33.02 0.00 43.43 2.57
7156 7380 1.074926 AGATGGACCGATGCCTCCT 60.075 57.895 0.00 0.00 0.00 3.69
7271 7500 2.654877 GAAACTGACGAGGCCCGA 59.345 61.111 18.74 0.00 41.76 5.14
7277 7506 1.409412 CACCTGACGAAACTGACGAG 58.591 55.000 0.00 0.00 34.70 4.18
7279 7508 1.853319 GCACCTGACGAAACTGACG 59.147 57.895 0.00 0.00 0.00 4.35
7310 7539 2.122547 AGGGGTCGGTTGTCAGGT 60.123 61.111 0.00 0.00 0.00 4.00
7328 7557 4.918583 GCTGTGATCTACTACTTATTCGGC 59.081 45.833 0.00 0.00 0.00 5.54
7341 7570 1.109920 GCCTCCCTCGCTGTGATCTA 61.110 60.000 0.00 0.00 0.00 1.98
7342 7571 2.430610 GCCTCCCTCGCTGTGATCT 61.431 63.158 0.00 0.00 0.00 2.75
7343 7572 2.107953 GCCTCCCTCGCTGTGATC 59.892 66.667 0.00 0.00 0.00 2.92
7349 7578 2.443016 AAGATCGCCTCCCTCGCT 60.443 61.111 0.00 0.00 0.00 4.93
7352 7581 1.144936 CCACAAGATCGCCTCCCTC 59.855 63.158 0.00 0.00 0.00 4.30
7354 7583 0.744771 GAACCACAAGATCGCCTCCC 60.745 60.000 0.00 0.00 0.00 4.30
7404 7633 4.778415 CTCGTCCTGCGTGGTCGG 62.778 72.222 13.10 3.55 45.13 4.79
7405 7634 4.778415 CCTCGTCCTGCGTGGTCG 62.778 72.222 8.41 8.41 45.93 4.79
7428 7657 2.317149 CTTGCCCTCGACCTGGATCC 62.317 65.000 4.20 4.20 0.00 3.36
7483 7712 4.426313 CTTCCGGTTGGGCCTCCC 62.426 72.222 4.53 3.21 45.71 4.30
7485 7714 4.035102 AGCTTCCGGTTGGGCCTC 62.035 66.667 4.53 0.00 35.24 4.70
7486 7715 4.351054 CAGCTTCCGGTTGGGCCT 62.351 66.667 4.53 0.00 35.24 5.19
7509 7738 3.570638 CTTGCCTCGCTGCGATGG 61.571 66.667 26.15 25.92 34.61 3.51
7510 7739 2.510012 TCTTGCCTCGCTGCGATG 60.510 61.111 26.15 23.07 34.61 3.84
7511 7740 2.202851 CTCTTGCCTCGCTGCGAT 60.203 61.111 26.15 0.00 34.61 4.58
7512 7741 4.441695 CCTCTTGCCTCGCTGCGA 62.442 66.667 24.43 24.43 0.00 5.10
7513 7742 4.441695 TCCTCTTGCCTCGCTGCG 62.442 66.667 17.25 17.25 0.00 5.18
7514 7743 2.511145 CTCCTCTTGCCTCGCTGC 60.511 66.667 0.00 0.00 0.00 5.25
7515 7744 1.141449 CTCTCCTCTTGCCTCGCTG 59.859 63.158 0.00 0.00 0.00 5.18
7516 7745 2.720134 GCTCTCCTCTTGCCTCGCT 61.720 63.158 0.00 0.00 0.00 4.93
7517 7746 2.202864 GCTCTCCTCTTGCCTCGC 60.203 66.667 0.00 0.00 0.00 5.03
7518 7747 2.498726 GGCTCTCCTCTTGCCTCG 59.501 66.667 0.00 0.00 43.05 4.63
7542 7771 4.819761 TGCTGATGGCGACGGCTC 62.820 66.667 22.70 16.50 45.43 4.70
7543 7772 4.166888 ATGCTGATGGCGACGGCT 62.167 61.111 22.70 7.99 45.43 5.52
7544 7773 3.643978 GATGCTGATGGCGACGGC 61.644 66.667 15.43 15.43 45.43 5.68
7545 7774 2.202919 TGATGCTGATGGCGACGG 60.203 61.111 0.00 0.00 45.43 4.79
7546 7775 1.156034 ATGTGATGCTGATGGCGACG 61.156 55.000 0.00 0.00 45.43 5.12
7547 7776 0.585357 GATGTGATGCTGATGGCGAC 59.415 55.000 0.00 0.00 45.43 5.19
7548 7777 0.178533 TGATGTGATGCTGATGGCGA 59.821 50.000 0.00 0.00 45.43 5.54
7549 7778 0.306840 GTGATGTGATGCTGATGGCG 59.693 55.000 0.00 0.00 45.43 5.69
7550 7779 1.333931 CTGTGATGTGATGCTGATGGC 59.666 52.381 0.00 0.00 42.22 4.40
7551 7780 1.333931 GCTGTGATGTGATGCTGATGG 59.666 52.381 0.00 0.00 0.00 3.51
7552 7781 1.003866 CGCTGTGATGTGATGCTGATG 60.004 52.381 0.00 0.00 0.00 3.07
7553 7782 1.296727 CGCTGTGATGTGATGCTGAT 58.703 50.000 0.00 0.00 0.00 2.90
7554 7783 0.741927 CCGCTGTGATGTGATGCTGA 60.742 55.000 0.00 0.00 0.00 4.26
7555 7784 1.719709 CCGCTGTGATGTGATGCTG 59.280 57.895 0.00 0.00 0.00 4.41
7556 7785 2.110967 GCCGCTGTGATGTGATGCT 61.111 57.895 0.00 0.00 0.00 3.79
7557 7786 2.406401 GCCGCTGTGATGTGATGC 59.594 61.111 0.00 0.00 0.00 3.91
7558 7787 1.810853 TCGCCGCTGTGATGTGATG 60.811 57.895 0.00 0.00 0.00 3.07
7559 7788 1.811266 GTCGCCGCTGTGATGTGAT 60.811 57.895 0.00 0.00 32.72 3.06
7560 7789 2.432456 GTCGCCGCTGTGATGTGA 60.432 61.111 0.00 0.00 32.72 3.58
7561 7790 3.842126 CGTCGCCGCTGTGATGTG 61.842 66.667 2.98 0.00 34.08 3.21
7571 7800 2.730672 CTTTCCTCTTGCGTCGCCG 61.731 63.158 15.88 6.00 37.07 6.46
7572 7801 3.028366 GCTTTCCTCTTGCGTCGCC 62.028 63.158 15.88 0.00 0.00 5.54
7573 7802 2.476499 GCTTTCCTCTTGCGTCGC 59.524 61.111 11.10 11.10 0.00 5.19


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.