Multiple sequence alignment - TraesCS7D01G134900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G134900 chr7D 100.000 2044 0 0 1 2044 86145908 86147951 0.000000e+00 3775
1 TraesCS7D01G134900 chr7D 100.000 356 0 0 2470 2825 86148377 86148732 0.000000e+00 658
2 TraesCS7D01G134900 chr7D 94.944 356 11 2 2470 2825 119987113 119986765 4.110000e-153 551
3 TraesCS7D01G134900 chr5D 90.914 1860 160 8 1 1854 561593418 561595274 0.000000e+00 2490
4 TraesCS7D01G134900 chr5D 84.429 1856 281 7 1 1854 88177275 88179124 0.000000e+00 1820
5 TraesCS7D01G134900 chr4D 90.787 1856 168 3 1 1854 91068951 91067097 0.000000e+00 2477
6 TraesCS7D01G134900 chr2D 90.016 1823 167 7 34 1854 29827723 29829532 0.000000e+00 2344
7 TraesCS7D01G134900 chr2A 89.111 1855 198 4 1 1854 756354001 756352150 0.000000e+00 2303
8 TraesCS7D01G134900 chrUn 90.102 1374 120 8 485 1855 94833233 94831873 0.000000e+00 1770
9 TraesCS7D01G134900 chrUn 88.496 1330 128 9 527 1854 306064019 306065325 0.000000e+00 1585
10 TraesCS7D01G134900 chr3A 96.439 983 33 2 873 1854 215484224 215483243 0.000000e+00 1620
11 TraesCS7D01G134900 chr2B 88.571 1330 127 9 527 1854 691515561 691516867 0.000000e+00 1591
12 TraesCS7D01G134900 chr6A 79.581 1861 367 11 1 1854 549310825 549308971 0.000000e+00 1319
13 TraesCS7D01G134900 chr6A 78.885 1847 354 20 17 1854 544157020 544158839 0.000000e+00 1218
14 TraesCS7D01G134900 chr6A 79.805 1644 313 14 1 1638 180612848 180611218 0.000000e+00 1179
15 TraesCS7D01G134900 chr5A 79.345 1864 368 13 1 1854 552582992 552584848 0.000000e+00 1293
16 TraesCS7D01G134900 chr5A 94.944 356 13 1 2470 2825 153281532 153281882 1.140000e-153 553
17 TraesCS7D01G134900 chr5A 94.382 356 12 3 2470 2825 156591843 156592190 8.900000e-150 540
18 TraesCS7D01G134900 chr5A 92.697 356 17 2 2470 2825 153491292 153491638 3.250000e-139 505
19 TraesCS7D01G134900 chr5A 93.722 223 13 1 2470 2692 153465744 153465965 1.620000e-87 333
20 TraesCS7D01G134900 chr5A 92.754 69 3 2 2757 2825 153465963 153466029 6.440000e-17 99
21 TraesCS7D01G134900 chr1D 88.079 302 22 4 2470 2769 323569986 323570275 2.080000e-91 346
22 TraesCS7D01G134900 chr1D 87.310 197 13 4 1849 2044 427241826 427241641 6.130000e-52 215
23 TraesCS7D01G134900 chr1D 86.802 197 12 4 1849 2044 425863949 425864132 1.030000e-49 207
24 TraesCS7D01G134900 chr1D 86.364 198 13 8 1849 2044 428606174 428606359 1.330000e-48 204
25 TraesCS7D01G134900 chr5B 82.143 364 32 10 2470 2825 422249755 422250093 5.960000e-72 281
26 TraesCS7D01G134900 chr6B 86.294 197 15 5 1849 2044 666382710 666382525 1.330000e-48 204
27 TraesCS7D01G134900 chr6B 91.743 109 7 2 1937 2044 255758057 255757950 1.750000e-32 150
28 TraesCS7D01G134900 chr6B 90.351 114 10 1 1931 2044 264359874 264359986 6.310000e-32 148
29 TraesCS7D01G134900 chr6D 91.228 114 10 0 1931 2044 105057624 105057511 3.770000e-34 156
30 TraesCS7D01G134900 chr6D 89.474 114 11 1 1931 2044 105206634 105206522 2.930000e-30 143
31 TraesCS7D01G134900 chr4B 90.351 114 11 0 1931 2044 138475642 138475755 1.750000e-32 150


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G134900 chr7D 86145908 86148732 2824 False 2216.5 3775 100.000 1 2825 2 chr7D.!!$F1 2824
1 TraesCS7D01G134900 chr5D 561593418 561595274 1856 False 2490.0 2490 90.914 1 1854 1 chr5D.!!$F2 1853
2 TraesCS7D01G134900 chr5D 88177275 88179124 1849 False 1820.0 1820 84.429 1 1854 1 chr5D.!!$F1 1853
3 TraesCS7D01G134900 chr4D 91067097 91068951 1854 True 2477.0 2477 90.787 1 1854 1 chr4D.!!$R1 1853
4 TraesCS7D01G134900 chr2D 29827723 29829532 1809 False 2344.0 2344 90.016 34 1854 1 chr2D.!!$F1 1820
5 TraesCS7D01G134900 chr2A 756352150 756354001 1851 True 2303.0 2303 89.111 1 1854 1 chr2A.!!$R1 1853
6 TraesCS7D01G134900 chrUn 94831873 94833233 1360 True 1770.0 1770 90.102 485 1855 1 chrUn.!!$R1 1370
7 TraesCS7D01G134900 chrUn 306064019 306065325 1306 False 1585.0 1585 88.496 527 1854 1 chrUn.!!$F1 1327
8 TraesCS7D01G134900 chr3A 215483243 215484224 981 True 1620.0 1620 96.439 873 1854 1 chr3A.!!$R1 981
9 TraesCS7D01G134900 chr2B 691515561 691516867 1306 False 1591.0 1591 88.571 527 1854 1 chr2B.!!$F1 1327
10 TraesCS7D01G134900 chr6A 549308971 549310825 1854 True 1319.0 1319 79.581 1 1854 1 chr6A.!!$R2 1853
11 TraesCS7D01G134900 chr6A 544157020 544158839 1819 False 1218.0 1218 78.885 17 1854 1 chr6A.!!$F1 1837
12 TraesCS7D01G134900 chr6A 180611218 180612848 1630 True 1179.0 1179 79.805 1 1638 1 chr6A.!!$R1 1637
13 TraesCS7D01G134900 chr5A 552582992 552584848 1856 False 1293.0 1293 79.345 1 1854 1 chr5A.!!$F4 1853

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
453 457 0.539986 TGATCTGGCGGGTAGGAAAC 59.46 55.0 0.0 0.0 0.0 2.78 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1878 1902 0.037734 CGCTCTAACCCCCAAAACCT 59.962 55.0 0.0 0.0 0.0 3.5 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
129 130 3.531934 ACATGTGAAGATCTGATGCGA 57.468 42.857 0.00 0.00 0.00 5.10
138 139 1.998315 GATCTGATGCGAATGATCCGG 59.002 52.381 0.00 0.00 31.78 5.14
165 166 1.867363 TCTTGGGAGTAGAGAAGGGC 58.133 55.000 0.00 0.00 0.00 5.19
174 175 4.020128 GGAGTAGAGAAGGGCAAGAGAAAA 60.020 45.833 0.00 0.00 0.00 2.29
264 268 1.399727 CGACTTTTTAACCAGGCGCTG 60.400 52.381 7.64 3.34 34.02 5.18
381 385 1.668151 GGTTTTCTCGAGTGCGGCT 60.668 57.895 13.13 0.00 38.28 5.52
390 394 2.431942 AGTGCGGCTTCGGTTACG 60.432 61.111 0.00 0.00 42.74 3.18
453 457 0.539986 TGATCTGGCGGGTAGGAAAC 59.460 55.000 0.00 0.00 0.00 2.78
465 470 2.037144 GTAGGAAACGGGAGAGCCATA 58.963 52.381 0.00 0.00 35.15 2.74
507 512 2.361610 CCAAGGAATGGCAGCGGT 60.362 61.111 0.00 0.00 43.80 5.68
588 594 4.296621 TCATGGAGCATGGAATATGGAG 57.703 45.455 0.00 0.00 41.66 3.86
603 610 2.067365 TGGAGCTAGTTCGGAGCATA 57.933 50.000 0.05 0.00 42.69 3.14
651 661 2.627699 TGCAACAATCAAAACCTCTCCC 59.372 45.455 0.00 0.00 0.00 4.30
836 846 1.839994 CCATGCTCCTCCTAAGGTTCA 59.160 52.381 0.00 0.00 43.82 3.18
1153 1175 2.108157 TTCGCAACGAGCTGGTGT 59.892 55.556 0.71 0.00 42.61 4.16
1196 1218 4.043168 AGTGTCCAAACGCTTCCG 57.957 55.556 0.00 0.00 43.72 4.30
1280 1302 2.271800 GAAGCAGGTGGTTGATACGAG 58.728 52.381 0.00 0.00 35.69 4.18
1415 1437 2.688666 TGGAGAGGCCGGAGCAAT 60.689 61.111 5.05 0.00 42.56 3.56
1663 1685 3.325870 CAGGTTAGACGCTTGATGTCAA 58.674 45.455 0.00 0.00 38.83 3.18
1681 1703 8.260818 TGATGTCAAGAGGTAGAGAAATAAAGG 58.739 37.037 0.00 0.00 0.00 3.11
1710 1732 2.099263 TGTACGTAGAGAGCAGAATGGC 59.901 50.000 0.00 0.00 35.86 4.40
1874 1898 8.485578 AAAAAGGGTGTATTTACATTGGAGAA 57.514 30.769 0.00 0.00 38.63 2.87
1875 1899 8.485578 AAAAGGGTGTATTTACATTGGAGAAA 57.514 30.769 0.00 0.00 38.63 2.52
1876 1900 8.485578 AAAGGGTGTATTTACATTGGAGAAAA 57.514 30.769 0.00 0.00 38.63 2.29
1877 1901 8.664669 AAGGGTGTATTTACATTGGAGAAAAT 57.335 30.769 0.00 0.00 38.63 1.82
1878 1902 9.762381 AAGGGTGTATTTACATTGGAGAAAATA 57.238 29.630 0.00 0.00 38.63 1.40
1879 1903 9.408648 AGGGTGTATTTACATTGGAGAAAATAG 57.591 33.333 0.00 0.00 38.63 1.73
1880 1904 8.630037 GGGTGTATTTACATTGGAGAAAATAGG 58.370 37.037 0.00 0.00 38.63 2.57
1881 1905 9.185680 GGTGTATTTACATTGGAGAAAATAGGT 57.814 33.333 0.00 0.00 38.63 3.08
1886 1910 9.942850 ATTTACATTGGAGAAAATAGGTTTTGG 57.057 29.630 0.00 0.00 37.65 3.28
1887 1911 6.358974 ACATTGGAGAAAATAGGTTTTGGG 57.641 37.500 0.00 0.00 37.65 4.12
1888 1912 5.248248 ACATTGGAGAAAATAGGTTTTGGGG 59.752 40.000 0.00 0.00 37.65 4.96
1889 1913 3.785364 TGGAGAAAATAGGTTTTGGGGG 58.215 45.455 0.00 0.00 37.65 5.40
1890 1914 3.143168 TGGAGAAAATAGGTTTTGGGGGT 59.857 43.478 0.00 0.00 37.65 4.95
1891 1915 4.164981 GGAGAAAATAGGTTTTGGGGGTT 58.835 43.478 0.00 0.00 37.65 4.11
1892 1916 5.162859 TGGAGAAAATAGGTTTTGGGGGTTA 60.163 40.000 0.00 0.00 37.65 2.85
1893 1917 5.421056 GGAGAAAATAGGTTTTGGGGGTTAG 59.579 44.000 0.00 0.00 37.65 2.34
1894 1918 6.222227 AGAAAATAGGTTTTGGGGGTTAGA 57.778 37.500 0.00 0.00 37.65 2.10
1895 1919 6.253758 AGAAAATAGGTTTTGGGGGTTAGAG 58.746 40.000 0.00 0.00 37.65 2.43
1896 1920 3.664551 ATAGGTTTTGGGGGTTAGAGC 57.335 47.619 0.00 0.00 0.00 4.09
1897 1921 0.037734 AGGTTTTGGGGGTTAGAGCG 59.962 55.000 0.00 0.00 0.00 5.03
1898 1922 1.592400 GGTTTTGGGGGTTAGAGCGC 61.592 60.000 0.00 0.00 0.00 5.92
1899 1923 0.891904 GTTTTGGGGGTTAGAGCGCA 60.892 55.000 11.47 0.00 0.00 6.09
1900 1924 0.039035 TTTTGGGGGTTAGAGCGCAT 59.961 50.000 11.47 0.00 0.00 4.73
1901 1925 0.679640 TTTGGGGGTTAGAGCGCATG 60.680 55.000 11.47 0.00 0.00 4.06
1902 1926 2.203209 GGGGGTTAGAGCGCATGG 60.203 66.667 11.47 0.00 0.00 3.66
1903 1927 2.742116 GGGGGTTAGAGCGCATGGA 61.742 63.158 11.47 0.00 0.00 3.41
1904 1928 1.451936 GGGGTTAGAGCGCATGGAT 59.548 57.895 11.47 0.00 0.00 3.41
1905 1929 0.886490 GGGGTTAGAGCGCATGGATG 60.886 60.000 11.47 0.00 0.00 3.51
1906 1930 0.179045 GGGTTAGAGCGCATGGATGT 60.179 55.000 11.47 0.00 0.00 3.06
1907 1931 1.070134 GGGTTAGAGCGCATGGATGTA 59.930 52.381 11.47 0.00 0.00 2.29
1908 1932 2.484770 GGGTTAGAGCGCATGGATGTAA 60.485 50.000 11.47 0.00 0.00 2.41
1909 1933 3.403038 GGTTAGAGCGCATGGATGTAAT 58.597 45.455 11.47 0.00 0.00 1.89
1910 1934 3.187227 GGTTAGAGCGCATGGATGTAATG 59.813 47.826 11.47 0.00 0.00 1.90
1911 1935 1.888215 AGAGCGCATGGATGTAATGG 58.112 50.000 11.47 0.00 0.00 3.16
1912 1936 1.417517 AGAGCGCATGGATGTAATGGA 59.582 47.619 11.47 0.00 0.00 3.41
1913 1937 2.039480 AGAGCGCATGGATGTAATGGAT 59.961 45.455 11.47 0.00 0.00 3.41
1914 1938 2.156917 AGCGCATGGATGTAATGGATG 58.843 47.619 11.47 0.00 0.00 3.51
1915 1939 1.881973 GCGCATGGATGTAATGGATGT 59.118 47.619 0.30 0.00 0.00 3.06
1916 1940 3.073678 GCGCATGGATGTAATGGATGTA 58.926 45.455 0.30 0.00 0.00 2.29
1917 1941 3.691118 GCGCATGGATGTAATGGATGTAT 59.309 43.478 0.30 0.00 0.00 2.29
1918 1942 4.437794 GCGCATGGATGTAATGGATGTATG 60.438 45.833 0.30 0.00 0.00 2.39
1919 1943 4.095334 CGCATGGATGTAATGGATGTATGG 59.905 45.833 0.00 0.00 0.00 2.74
1920 1944 4.400251 GCATGGATGTAATGGATGTATGGG 59.600 45.833 0.00 0.00 0.00 4.00
1921 1945 5.807392 GCATGGATGTAATGGATGTATGGGA 60.807 44.000 0.00 0.00 0.00 4.37
1922 1946 5.921153 TGGATGTAATGGATGTATGGGAA 57.079 39.130 0.00 0.00 0.00 3.97
1923 1947 5.879763 TGGATGTAATGGATGTATGGGAAG 58.120 41.667 0.00 0.00 0.00 3.46
1924 1948 5.222109 TGGATGTAATGGATGTATGGGAAGG 60.222 44.000 0.00 0.00 0.00 3.46
1925 1949 4.722526 TGTAATGGATGTATGGGAAGGG 57.277 45.455 0.00 0.00 0.00 3.95
1926 1950 2.683211 AATGGATGTATGGGAAGGGC 57.317 50.000 0.00 0.00 0.00 5.19
1927 1951 1.838611 ATGGATGTATGGGAAGGGCT 58.161 50.000 0.00 0.00 0.00 5.19
1928 1952 1.607225 TGGATGTATGGGAAGGGCTT 58.393 50.000 0.00 0.00 0.00 4.35
1929 1953 1.929494 TGGATGTATGGGAAGGGCTTT 59.071 47.619 0.00 0.00 0.00 3.51
1930 1954 2.310538 GGATGTATGGGAAGGGCTTTG 58.689 52.381 0.00 0.00 0.00 2.77
1931 1955 2.091885 GGATGTATGGGAAGGGCTTTGA 60.092 50.000 0.00 0.00 0.00 2.69
1932 1956 2.806945 TGTATGGGAAGGGCTTTGAG 57.193 50.000 0.00 0.00 0.00 3.02
1933 1957 1.284785 TGTATGGGAAGGGCTTTGAGG 59.715 52.381 0.00 0.00 0.00 3.86
1934 1958 1.285078 GTATGGGAAGGGCTTTGAGGT 59.715 52.381 0.00 0.00 0.00 3.85
1935 1959 0.786435 ATGGGAAGGGCTTTGAGGTT 59.214 50.000 0.00 0.00 0.00 3.50
1936 1960 0.560688 TGGGAAGGGCTTTGAGGTTT 59.439 50.000 0.00 0.00 0.00 3.27
1937 1961 1.062505 TGGGAAGGGCTTTGAGGTTTT 60.063 47.619 0.00 0.00 0.00 2.43
1938 1962 2.047061 GGGAAGGGCTTTGAGGTTTTT 58.953 47.619 0.00 0.00 0.00 1.94
1968 1992 9.550406 TTACGTGGGTGAGATAAATTATTAAGG 57.450 33.333 0.00 0.00 0.00 2.69
1969 1993 6.996282 ACGTGGGTGAGATAAATTATTAAGGG 59.004 38.462 0.00 0.00 0.00 3.95
1970 1994 6.072673 CGTGGGTGAGATAAATTATTAAGGGC 60.073 42.308 0.00 0.00 0.00 5.19
1971 1995 6.775629 GTGGGTGAGATAAATTATTAAGGGCA 59.224 38.462 0.00 0.00 0.00 5.36
1972 1996 7.451566 GTGGGTGAGATAAATTATTAAGGGCAT 59.548 37.037 0.00 0.00 0.00 4.40
1973 1997 8.010105 TGGGTGAGATAAATTATTAAGGGCATT 58.990 33.333 0.00 0.00 0.00 3.56
1974 1998 8.306761 GGGTGAGATAAATTATTAAGGGCATTG 58.693 37.037 0.00 0.00 0.00 2.82
1975 1999 8.306761 GGTGAGATAAATTATTAAGGGCATTGG 58.693 37.037 0.00 0.00 0.00 3.16
1976 2000 8.860088 GTGAGATAAATTATTAAGGGCATTGGT 58.140 33.333 0.00 0.00 0.00 3.67
1977 2001 8.859090 TGAGATAAATTATTAAGGGCATTGGTG 58.141 33.333 0.00 0.00 0.00 4.17
1978 2002 8.193953 AGATAAATTATTAAGGGCATTGGTGG 57.806 34.615 0.00 0.00 0.00 4.61
1979 2003 5.628797 AAATTATTAAGGGCATTGGTGGG 57.371 39.130 0.00 0.00 0.00 4.61
1980 2004 3.767309 TTATTAAGGGCATTGGTGGGT 57.233 42.857 0.00 0.00 0.00 4.51
1981 2005 4.883021 TTATTAAGGGCATTGGTGGGTA 57.117 40.909 0.00 0.00 0.00 3.69
1982 2006 3.767309 ATTAAGGGCATTGGTGGGTAA 57.233 42.857 0.00 0.00 0.00 2.85
1983 2007 3.767309 TTAAGGGCATTGGTGGGTAAT 57.233 42.857 0.00 0.00 0.00 1.89
1984 2008 2.640284 AAGGGCATTGGTGGGTAATT 57.360 45.000 0.00 0.00 0.00 1.40
1985 2009 2.640284 AGGGCATTGGTGGGTAATTT 57.360 45.000 0.00 0.00 0.00 1.82
1986 2010 2.914536 AGGGCATTGGTGGGTAATTTT 58.085 42.857 0.00 0.00 0.00 1.82
1987 2011 3.255831 AGGGCATTGGTGGGTAATTTTT 58.744 40.909 0.00 0.00 0.00 1.94
1988 2012 4.430441 AGGGCATTGGTGGGTAATTTTTA 58.570 39.130 0.00 0.00 0.00 1.52
1989 2013 4.846940 AGGGCATTGGTGGGTAATTTTTAA 59.153 37.500 0.00 0.00 0.00 1.52
1990 2014 5.490717 AGGGCATTGGTGGGTAATTTTTAAT 59.509 36.000 0.00 0.00 0.00 1.40
1991 2015 5.820423 GGGCATTGGTGGGTAATTTTTAATC 59.180 40.000 0.00 0.00 0.00 1.75
1992 2016 6.352651 GGGCATTGGTGGGTAATTTTTAATCT 60.353 38.462 0.00 0.00 0.00 2.40
1993 2017 7.109501 GGCATTGGTGGGTAATTTTTAATCTT 58.890 34.615 0.00 0.00 0.00 2.40
1994 2018 7.609918 GGCATTGGTGGGTAATTTTTAATCTTT 59.390 33.333 0.00 0.00 0.00 2.52
1995 2019 9.008965 GCATTGGTGGGTAATTTTTAATCTTTT 57.991 29.630 0.00 0.00 0.00 2.27
2010 2034 9.844257 TTTTAATCTTTTCAATCCAATGGTTGT 57.156 25.926 0.00 0.00 0.00 3.32
2011 2035 8.830201 TTAATCTTTTCAATCCAATGGTTGTG 57.170 30.769 0.00 0.00 0.00 3.33
2012 2036 4.630111 TCTTTTCAATCCAATGGTTGTGC 58.370 39.130 0.00 0.00 0.00 4.57
2013 2037 4.344679 TCTTTTCAATCCAATGGTTGTGCT 59.655 37.500 0.00 0.00 0.00 4.40
2014 2038 4.686191 TTTCAATCCAATGGTTGTGCTT 57.314 36.364 0.00 0.00 0.00 3.91
2015 2039 3.663995 TCAATCCAATGGTTGTGCTTG 57.336 42.857 0.00 0.00 0.00 4.01
2016 2040 2.964464 TCAATCCAATGGTTGTGCTTGT 59.036 40.909 0.00 0.00 0.00 3.16
2017 2041 3.005684 TCAATCCAATGGTTGTGCTTGTC 59.994 43.478 0.00 0.00 0.00 3.18
2018 2042 2.363306 TCCAATGGTTGTGCTTGTCT 57.637 45.000 0.00 0.00 0.00 3.41
2019 2043 3.500448 TCCAATGGTTGTGCTTGTCTA 57.500 42.857 0.00 0.00 0.00 2.59
2020 2044 3.826524 TCCAATGGTTGTGCTTGTCTAA 58.173 40.909 0.00 0.00 0.00 2.10
2021 2045 4.406456 TCCAATGGTTGTGCTTGTCTAAT 58.594 39.130 0.00 0.00 0.00 1.73
2022 2046 4.458989 TCCAATGGTTGTGCTTGTCTAATC 59.541 41.667 0.00 0.00 0.00 1.75
2023 2047 4.218200 CCAATGGTTGTGCTTGTCTAATCA 59.782 41.667 0.00 0.00 0.00 2.57
2024 2048 5.278907 CCAATGGTTGTGCTTGTCTAATCAA 60.279 40.000 0.00 0.00 0.00 2.57
2025 2049 6.392354 CAATGGTTGTGCTTGTCTAATCAAT 58.608 36.000 0.00 0.00 0.00 2.57
2026 2050 6.594788 ATGGTTGTGCTTGTCTAATCAATT 57.405 33.333 0.00 0.00 0.00 2.32
2027 2051 6.403866 TGGTTGTGCTTGTCTAATCAATTT 57.596 33.333 0.00 0.00 0.00 1.82
2028 2052 7.517614 TGGTTGTGCTTGTCTAATCAATTTA 57.482 32.000 0.00 0.00 0.00 1.40
2029 2053 7.946207 TGGTTGTGCTTGTCTAATCAATTTAA 58.054 30.769 0.00 0.00 0.00 1.52
2030 2054 8.417106 TGGTTGTGCTTGTCTAATCAATTTAAA 58.583 29.630 0.00 0.00 0.00 1.52
2031 2055 9.423061 GGTTGTGCTTGTCTAATCAATTTAAAT 57.577 29.630 0.00 0.00 0.00 1.40
2506 2530 9.321562 AGTAAATACTAACCGTTAATCATGTGG 57.678 33.333 0.00 0.00 34.13 4.17
2507 2531 7.562454 AAATACTAACCGTTAATCATGTGGG 57.438 36.000 0.00 0.00 0.00 4.61
2508 2532 3.881220 ACTAACCGTTAATCATGTGGGG 58.119 45.455 0.00 0.00 0.00 4.96
2509 2533 1.470051 AACCGTTAATCATGTGGGGC 58.530 50.000 0.00 0.00 0.00 5.80
2510 2534 0.395173 ACCGTTAATCATGTGGGGCC 60.395 55.000 0.00 0.00 0.00 5.80
2511 2535 0.395036 CCGTTAATCATGTGGGGCCA 60.395 55.000 4.39 0.00 0.00 5.36
2512 2536 1.468985 CGTTAATCATGTGGGGCCAA 58.531 50.000 4.39 0.00 0.00 4.52
2513 2537 1.821753 CGTTAATCATGTGGGGCCAAA 59.178 47.619 4.39 0.00 0.00 3.28
2514 2538 2.232452 CGTTAATCATGTGGGGCCAAAA 59.768 45.455 4.39 0.00 0.00 2.44
2515 2539 3.118811 CGTTAATCATGTGGGGCCAAAAT 60.119 43.478 4.39 0.00 0.00 1.82
2516 2540 4.098654 CGTTAATCATGTGGGGCCAAAATA 59.901 41.667 4.39 0.00 0.00 1.40
2517 2541 5.394663 CGTTAATCATGTGGGGCCAAAATAA 60.395 40.000 4.39 0.00 0.00 1.40
2518 2542 6.591001 GTTAATCATGTGGGGCCAAAATAAT 58.409 36.000 4.39 0.00 0.00 1.28
2519 2543 7.470702 CGTTAATCATGTGGGGCCAAAATAATA 60.471 37.037 4.39 0.00 0.00 0.98
2520 2544 6.821616 AATCATGTGGGGCCAAAATAATAA 57.178 33.333 4.39 0.00 0.00 1.40
2521 2545 5.606348 TCATGTGGGGCCAAAATAATAAC 57.394 39.130 4.39 0.00 0.00 1.89
2522 2546 4.098654 TCATGTGGGGCCAAAATAATAACG 59.901 41.667 4.39 0.00 0.00 3.18
2523 2547 2.761208 TGTGGGGCCAAAATAATAACGG 59.239 45.455 4.39 0.00 0.00 4.44
2524 2548 2.761767 GTGGGGCCAAAATAATAACGGT 59.238 45.455 4.39 0.00 0.00 4.83
2525 2549 3.196039 GTGGGGCCAAAATAATAACGGTT 59.804 43.478 4.39 0.00 0.00 4.44
2526 2550 3.838903 TGGGGCCAAAATAATAACGGTTT 59.161 39.130 4.39 0.00 0.00 3.27
2527 2551 5.021458 TGGGGCCAAAATAATAACGGTTTA 58.979 37.500 4.39 0.00 0.00 2.01
2528 2552 5.127356 TGGGGCCAAAATAATAACGGTTTAG 59.873 40.000 4.39 0.00 0.00 1.85
2529 2553 5.360429 GGGGCCAAAATAATAACGGTTTAGA 59.640 40.000 4.39 0.00 0.00 2.10
2530 2554 6.041182 GGGGCCAAAATAATAACGGTTTAGAT 59.959 38.462 4.39 0.00 0.00 1.98
2531 2555 7.418139 GGGGCCAAAATAATAACGGTTTAGATT 60.418 37.037 4.39 0.00 0.00 2.40
2532 2556 8.631797 GGGCCAAAATAATAACGGTTTAGATTA 58.368 33.333 4.39 0.00 0.00 1.75
2545 2569 9.503399 AACGGTTTAGATTAATCCATAGAATCC 57.497 33.333 11.92 6.72 31.21 3.01
2546 2570 8.881262 ACGGTTTAGATTAATCCATAGAATCCT 58.119 33.333 11.92 0.00 31.21 3.24
2547 2571 9.726438 CGGTTTAGATTAATCCATAGAATCCTT 57.274 33.333 11.92 0.00 31.21 3.36
2551 2575 9.944376 TTAGATTAATCCATAGAATCCTTTCGG 57.056 33.333 11.92 0.00 36.93 4.30
2552 2576 8.207350 AGATTAATCCATAGAATCCTTTCGGA 57.793 34.615 11.92 0.00 45.16 4.55
2553 2577 8.317679 AGATTAATCCATAGAATCCTTTCGGAG 58.682 37.037 11.92 0.00 44.06 4.63
2554 2578 5.896073 AATCCATAGAATCCTTTCGGAGT 57.104 39.130 0.00 0.00 44.06 3.85
2555 2579 5.896073 ATCCATAGAATCCTTTCGGAGTT 57.104 39.130 0.00 0.00 44.06 3.01
2556 2580 5.693769 TCCATAGAATCCTTTCGGAGTTT 57.306 39.130 0.00 0.00 44.06 2.66
2557 2581 5.671493 TCCATAGAATCCTTTCGGAGTTTC 58.329 41.667 0.00 0.00 44.06 2.78
2558 2582 4.816925 CCATAGAATCCTTTCGGAGTTTCC 59.183 45.833 0.00 0.00 44.06 3.13
2559 2583 5.428253 CATAGAATCCTTTCGGAGTTTCCA 58.572 41.667 0.00 0.00 44.06 3.53
2560 2584 4.576330 AGAATCCTTTCGGAGTTTCCAT 57.424 40.909 0.00 0.00 44.06 3.41
2561 2585 4.518249 AGAATCCTTTCGGAGTTTCCATC 58.482 43.478 0.00 0.00 44.06 3.51
2562 2586 4.226168 AGAATCCTTTCGGAGTTTCCATCT 59.774 41.667 0.00 0.00 44.06 2.90
2563 2587 4.576330 ATCCTTTCGGAGTTTCCATCTT 57.424 40.909 0.00 0.00 44.06 2.40
2564 2588 5.693769 ATCCTTTCGGAGTTTCCATCTTA 57.306 39.130 0.00 0.00 44.06 2.10
2565 2589 5.492855 TCCTTTCGGAGTTTCCATCTTAA 57.507 39.130 0.00 0.00 35.91 1.85
2566 2590 5.871834 TCCTTTCGGAGTTTCCATCTTAAA 58.128 37.500 0.00 0.00 35.91 1.52
2567 2591 6.300703 TCCTTTCGGAGTTTCCATCTTAAAA 58.699 36.000 0.00 0.00 35.91 1.52
2568 2592 6.430000 TCCTTTCGGAGTTTCCATCTTAAAAG 59.570 38.462 0.00 0.00 35.91 2.27
2569 2593 6.430000 CCTTTCGGAGTTTCCATCTTAAAAGA 59.570 38.462 0.00 0.00 35.91 2.52
2570 2594 7.040686 CCTTTCGGAGTTTCCATCTTAAAAGAA 60.041 37.037 0.00 0.00 38.77 2.52
2571 2595 7.811117 TTCGGAGTTTCCATCTTAAAAGAAA 57.189 32.000 0.00 0.00 38.77 2.52
2572 2596 7.811117 TCGGAGTTTCCATCTTAAAAGAAAA 57.189 32.000 0.00 0.00 38.77 2.29
2573 2597 8.228035 TCGGAGTTTCCATCTTAAAAGAAAAA 57.772 30.769 0.00 0.00 38.77 1.94
2596 2620 6.850752 AAAAACAGGTTCCTTCTCAAAAGA 57.149 33.333 0.00 0.00 0.00 2.52
2597 2621 6.850752 AAAACAGGTTCCTTCTCAAAAGAA 57.149 33.333 0.00 0.00 39.22 2.52
2598 2622 5.836821 AACAGGTTCCTTCTCAAAAGAAC 57.163 39.130 0.00 0.00 36.59 3.01
2599 2623 4.855340 ACAGGTTCCTTCTCAAAAGAACA 58.145 39.130 0.00 0.00 37.50 3.18
2600 2624 4.884164 ACAGGTTCCTTCTCAAAAGAACAG 59.116 41.667 0.00 0.00 37.50 3.16
2601 2625 4.276926 CAGGTTCCTTCTCAAAAGAACAGG 59.723 45.833 0.00 0.00 37.50 4.00
2602 2626 4.079730 AGGTTCCTTCTCAAAAGAACAGGT 60.080 41.667 0.00 0.00 37.50 4.00
2603 2627 4.645136 GGTTCCTTCTCAAAAGAACAGGTT 59.355 41.667 0.00 0.00 37.50 3.50
2604 2628 5.127194 GGTTCCTTCTCAAAAGAACAGGTTT 59.873 40.000 0.00 0.00 37.50 3.27
2605 2629 6.266323 GTTCCTTCTCAAAAGAACAGGTTTC 58.734 40.000 0.00 0.00 36.33 2.78
2606 2630 4.887655 TCCTTCTCAAAAGAACAGGTTTCC 59.112 41.667 0.00 0.00 36.59 3.13
2607 2631 4.644685 CCTTCTCAAAAGAACAGGTTTCCA 59.355 41.667 0.00 0.00 36.59 3.53
2608 2632 5.302823 CCTTCTCAAAAGAACAGGTTTCCAT 59.697 40.000 0.00 0.00 36.59 3.41
2609 2633 6.391227 TTCTCAAAAGAACAGGTTTCCATC 57.609 37.500 0.00 0.00 36.59 3.51
2610 2634 5.694995 TCTCAAAAGAACAGGTTTCCATCT 58.305 37.500 0.00 0.00 0.00 2.90
2611 2635 5.765182 TCTCAAAAGAACAGGTTTCCATCTC 59.235 40.000 0.00 0.00 0.00 2.75
2612 2636 5.445069 TCAAAAGAACAGGTTTCCATCTCA 58.555 37.500 0.00 0.00 0.00 3.27
2613 2637 5.890985 TCAAAAGAACAGGTTTCCATCTCAA 59.109 36.000 0.00 0.00 0.00 3.02
2614 2638 6.379703 TCAAAAGAACAGGTTTCCATCTCAAA 59.620 34.615 0.00 0.00 0.00 2.69
2615 2639 6.790232 AAAGAACAGGTTTCCATCTCAAAA 57.210 33.333 0.00 0.00 0.00 2.44
2616 2640 6.396829 AAGAACAGGTTTCCATCTCAAAAG 57.603 37.500 0.00 0.00 0.00 2.27
2617 2641 5.694995 AGAACAGGTTTCCATCTCAAAAGA 58.305 37.500 0.00 0.00 35.54 2.52
2618 2642 6.129179 AGAACAGGTTTCCATCTCAAAAGAA 58.871 36.000 0.00 0.00 34.49 2.52
2619 2643 6.607198 AGAACAGGTTTCCATCTCAAAAGAAA 59.393 34.615 0.00 0.00 34.49 2.52
2620 2644 6.396829 ACAGGTTTCCATCTCAAAAGAAAG 57.603 37.500 0.00 0.00 34.49 2.62
2621 2645 6.129179 ACAGGTTTCCATCTCAAAAGAAAGA 58.871 36.000 0.00 0.00 34.49 2.52
2622 2646 6.607198 ACAGGTTTCCATCTCAAAAGAAAGAA 59.393 34.615 0.00 0.00 34.49 2.52
2623 2647 6.920210 CAGGTTTCCATCTCAAAAGAAAGAAC 59.080 38.462 0.00 0.00 34.49 3.01
2624 2648 6.607198 AGGTTTCCATCTCAAAAGAAAGAACA 59.393 34.615 0.00 0.00 34.49 3.18
2625 2649 6.697455 GGTTTCCATCTCAAAAGAAAGAACAC 59.303 38.462 0.00 0.00 34.49 3.32
2626 2650 7.257722 GTTTCCATCTCAAAAGAAAGAACACA 58.742 34.615 0.00 0.00 34.49 3.72
2627 2651 6.624352 TCCATCTCAAAAGAAAGAACACAG 57.376 37.500 0.00 0.00 34.49 3.66
2628 2652 6.356556 TCCATCTCAAAAGAAAGAACACAGA 58.643 36.000 0.00 0.00 34.49 3.41
2629 2653 6.260936 TCCATCTCAAAAGAAAGAACACAGAC 59.739 38.462 0.00 0.00 34.49 3.51
2630 2654 6.261826 CCATCTCAAAAGAAAGAACACAGACT 59.738 38.462 0.00 0.00 34.49 3.24
2631 2655 7.442364 CCATCTCAAAAGAAAGAACACAGACTA 59.558 37.037 0.00 0.00 34.49 2.59
2632 2656 8.997323 CATCTCAAAAGAAAGAACACAGACTAT 58.003 33.333 0.00 0.00 34.49 2.12
2633 2657 8.964476 TCTCAAAAGAAAGAACACAGACTATT 57.036 30.769 0.00 0.00 0.00 1.73
2634 2658 9.396022 TCTCAAAAGAAAGAACACAGACTATTT 57.604 29.630 0.00 0.00 0.00 1.40
2641 2665 9.566432 AGAAAGAACACAGACTATTTTTGATCT 57.434 29.630 0.00 0.00 0.00 2.75
2642 2666 9.604626 GAAAGAACACAGACTATTTTTGATCTG 57.395 33.333 0.00 0.00 43.47 2.90
2643 2667 8.908786 AAGAACACAGACTATTTTTGATCTGA 57.091 30.769 7.08 0.00 40.92 3.27
2644 2668 9.512588 AAGAACACAGACTATTTTTGATCTGAT 57.487 29.630 7.08 0.00 40.92 2.90
2671 2695 9.840427 ATTAGATTAAAAGAAATGTCACGGTTG 57.160 29.630 0.00 0.00 0.00 3.77
2672 2696 6.149633 AGATTAAAAGAAATGTCACGGTTGC 58.850 36.000 0.00 0.00 0.00 4.17
2673 2697 3.791973 AAAAGAAATGTCACGGTTGCA 57.208 38.095 0.00 0.00 0.00 4.08
2674 2698 3.791973 AAAGAAATGTCACGGTTGCAA 57.208 38.095 0.00 0.00 0.00 4.08
2675 2699 3.791973 AAGAAATGTCACGGTTGCAAA 57.208 38.095 0.00 0.00 0.00 3.68
2693 2717 7.916552 GTTGCAAACTCTAACTAACTTTCTCA 58.083 34.615 0.00 0.00 45.32 3.27
2694 2718 7.478520 TGCAAACTCTAACTAACTTTCTCAC 57.521 36.000 0.00 0.00 0.00 3.51
2695 2719 7.045416 TGCAAACTCTAACTAACTTTCTCACA 58.955 34.615 0.00 0.00 0.00 3.58
2696 2720 7.715249 TGCAAACTCTAACTAACTTTCTCACAT 59.285 33.333 0.00 0.00 0.00 3.21
2697 2721 8.012241 GCAAACTCTAACTAACTTTCTCACATG 58.988 37.037 0.00 0.00 0.00 3.21
2698 2722 9.046296 CAAACTCTAACTAACTTTCTCACATGT 57.954 33.333 0.00 0.00 0.00 3.21
2699 2723 8.594881 AACTCTAACTAACTTTCTCACATGTG 57.405 34.615 20.18 20.18 0.00 3.21
2700 2724 7.727181 ACTCTAACTAACTTTCTCACATGTGT 58.273 34.615 24.63 6.91 0.00 3.72
2701 2725 8.857098 ACTCTAACTAACTTTCTCACATGTGTA 58.143 33.333 24.63 12.11 0.00 2.90
2702 2726 9.347934 CTCTAACTAACTTTCTCACATGTGTAG 57.652 37.037 24.63 19.21 0.00 2.74
2703 2727 8.857098 TCTAACTAACTTTCTCACATGTGTAGT 58.143 33.333 24.63 18.63 0.00 2.73
2704 2728 7.948278 AACTAACTTTCTCACATGTGTAGTC 57.052 36.000 24.63 0.00 0.00 2.59
2705 2729 6.150318 ACTAACTTTCTCACATGTGTAGTCG 58.850 40.000 24.63 17.42 0.00 4.18
2706 2730 4.585955 ACTTTCTCACATGTGTAGTCGT 57.414 40.909 24.63 14.54 0.00 4.34
2707 2731 4.547532 ACTTTCTCACATGTGTAGTCGTC 58.452 43.478 24.63 0.00 0.00 4.20
2708 2732 4.037565 ACTTTCTCACATGTGTAGTCGTCA 59.962 41.667 24.63 2.63 0.00 4.35
2709 2733 4.577834 TTCTCACATGTGTAGTCGTCAA 57.422 40.909 24.63 8.47 0.00 3.18
2710 2734 4.577834 TCTCACATGTGTAGTCGTCAAA 57.422 40.909 24.63 1.15 0.00 2.69
2711 2735 4.939271 TCTCACATGTGTAGTCGTCAAAA 58.061 39.130 24.63 0.63 0.00 2.44
2712 2736 5.353111 TCTCACATGTGTAGTCGTCAAAAA 58.647 37.500 24.63 0.42 0.00 1.94
2737 2761 8.831715 AAAAAGAAAAACTTTCTCACATGTGT 57.168 26.923 24.63 1.92 46.55 3.72
2738 2762 7.816945 AAAGAAAAACTTTCTCACATGTGTG 57.183 32.000 24.63 21.95 44.36 3.82
2739 2763 6.515272 AGAAAAACTTTCTCACATGTGTGT 57.485 33.333 24.63 13.66 45.76 3.72
2740 2764 6.924111 AGAAAAACTTTCTCACATGTGTGTT 58.076 32.000 24.63 17.82 45.76 3.32
2741 2765 7.029563 AGAAAAACTTTCTCACATGTGTGTTC 58.970 34.615 24.63 17.77 45.76 3.18
2742 2766 6.515272 AAAACTTTCTCACATGTGTGTTCT 57.485 33.333 24.63 8.17 45.76 3.01
2743 2767 7.624360 AAAACTTTCTCACATGTGTGTTCTA 57.376 32.000 24.63 4.13 45.76 2.10
2744 2768 7.624360 AAACTTTCTCACATGTGTGTTCTAA 57.376 32.000 24.63 10.17 45.76 2.10
2745 2769 7.624360 AACTTTCTCACATGTGTGTTCTAAA 57.376 32.000 24.63 16.15 45.76 1.85
2746 2770 7.624360 ACTTTCTCACATGTGTGTTCTAAAA 57.376 32.000 24.63 15.84 45.76 1.52
2747 2771 7.697691 ACTTTCTCACATGTGTGTTCTAAAAG 58.302 34.615 24.63 23.95 45.76 2.27
2748 2772 7.552687 ACTTTCTCACATGTGTGTTCTAAAAGA 59.447 33.333 27.86 18.52 45.76 2.52
2749 2773 7.857734 TTCTCACATGTGTGTTCTAAAAGAA 57.142 32.000 24.63 18.35 45.76 2.52
2763 2787 7.566760 TTCTAAAAGAACAATGCTCTCAACA 57.433 32.000 0.00 0.00 0.00 3.33
2764 2788 7.750229 TCTAAAAGAACAATGCTCTCAACAT 57.250 32.000 0.00 0.00 0.00 2.71
2765 2789 8.846943 TCTAAAAGAACAATGCTCTCAACATA 57.153 30.769 0.00 0.00 0.00 2.29
2766 2790 9.283768 TCTAAAAGAACAATGCTCTCAACATAA 57.716 29.630 0.00 0.00 0.00 1.90
2769 2793 9.768662 AAAAGAACAATGCTCTCAACATAATTT 57.231 25.926 0.00 0.00 0.00 1.82
2772 2796 9.236006 AGAACAATGCTCTCAACATAATTTAGT 57.764 29.630 0.00 0.00 0.00 2.24
2773 2797 9.846248 GAACAATGCTCTCAACATAATTTAGTT 57.154 29.630 0.00 0.00 0.00 2.24
2775 2799 9.846248 ACAATGCTCTCAACATAATTTAGTTTC 57.154 29.630 0.00 0.00 0.00 2.78
2776 2800 9.294030 CAATGCTCTCAACATAATTTAGTTTCC 57.706 33.333 0.00 0.00 0.00 3.13
2777 2801 7.994425 TGCTCTCAACATAATTTAGTTTCCA 57.006 32.000 0.00 0.00 0.00 3.53
2778 2802 8.579850 TGCTCTCAACATAATTTAGTTTCCAT 57.420 30.769 0.00 0.00 0.00 3.41
2779 2803 8.677300 TGCTCTCAACATAATTTAGTTTCCATC 58.323 33.333 0.00 0.00 0.00 3.51
2780 2804 8.897752 GCTCTCAACATAATTTAGTTTCCATCT 58.102 33.333 0.00 0.00 0.00 2.90
2784 2808 9.739276 TCAACATAATTTAGTTTCCATCTCTGT 57.261 29.630 0.00 0.00 0.00 3.41
2787 2811 9.178758 ACATAATTTAGTTTCCATCTCTGTTCC 57.821 33.333 0.00 0.00 0.00 3.62
2788 2812 6.743575 AATTTAGTTTCCATCTCTGTTCCG 57.256 37.500 0.00 0.00 0.00 4.30
2789 2813 2.770164 AGTTTCCATCTCTGTTCCGG 57.230 50.000 0.00 0.00 0.00 5.14
2790 2814 1.087501 GTTTCCATCTCTGTTCCGGC 58.912 55.000 0.00 0.00 0.00 6.13
2791 2815 0.984230 TTTCCATCTCTGTTCCGGCT 59.016 50.000 0.00 0.00 0.00 5.52
2792 2816 0.537188 TTCCATCTCTGTTCCGGCTC 59.463 55.000 0.00 0.00 0.00 4.70
2793 2817 0.324738 TCCATCTCTGTTCCGGCTCT 60.325 55.000 0.00 0.00 0.00 4.09
2794 2818 0.103937 CCATCTCTGTTCCGGCTCTC 59.896 60.000 0.00 0.00 0.00 3.20
2795 2819 0.103937 CATCTCTGTTCCGGCTCTCC 59.896 60.000 0.00 0.00 0.00 3.71
2796 2820 0.032615 ATCTCTGTTCCGGCTCTCCT 60.033 55.000 0.00 0.00 0.00 3.69
2797 2821 0.967887 TCTCTGTTCCGGCTCTCCTG 60.968 60.000 0.00 0.00 0.00 3.86
2798 2822 1.954362 CTCTGTTCCGGCTCTCCTGG 61.954 65.000 0.00 0.00 0.00 4.45
2799 2823 3.672295 CTGTTCCGGCTCTCCTGGC 62.672 68.421 0.00 0.00 0.00 4.85
2800 2824 4.475135 GTTCCGGCTCTCCTGGCC 62.475 72.222 0.00 0.00 45.57 5.36
2801 2825 4.722535 TTCCGGCTCTCCTGGCCT 62.723 66.667 3.32 0.00 46.73 5.19
2802 2826 4.722535 TCCGGCTCTCCTGGCCTT 62.723 66.667 3.32 0.00 46.73 4.35
2803 2827 4.168291 CCGGCTCTCCTGGCCTTC 62.168 72.222 3.32 0.00 46.73 3.46
2804 2828 4.168291 CGGCTCTCCTGGCCTTCC 62.168 72.222 3.32 0.00 46.73 3.46
2805 2829 2.690510 GGCTCTCCTGGCCTTCCT 60.691 66.667 3.32 0.00 45.57 3.36
2806 2830 2.741055 GGCTCTCCTGGCCTTCCTC 61.741 68.421 3.32 0.00 45.57 3.71
2807 2831 3.087666 GCTCTCCTGGCCTTCCTCG 62.088 68.421 3.32 0.00 0.00 4.63
2808 2832 1.380515 CTCTCCTGGCCTTCCTCGA 60.381 63.158 3.32 0.00 0.00 4.04
2809 2833 1.671901 CTCTCCTGGCCTTCCTCGAC 61.672 65.000 3.32 0.00 0.00 4.20
2810 2834 2.683933 TCCTGGCCTTCCTCGACC 60.684 66.667 3.32 0.00 0.00 4.79
2811 2835 2.685380 CCTGGCCTTCCTCGACCT 60.685 66.667 3.32 0.00 0.00 3.85
2812 2836 1.381327 CCTGGCCTTCCTCGACCTA 60.381 63.158 3.32 0.00 0.00 3.08
2813 2837 0.760945 CCTGGCCTTCCTCGACCTAT 60.761 60.000 3.32 0.00 0.00 2.57
2814 2838 1.480683 CCTGGCCTTCCTCGACCTATA 60.481 57.143 3.32 0.00 0.00 1.31
2815 2839 1.614413 CTGGCCTTCCTCGACCTATAC 59.386 57.143 3.32 0.00 0.00 1.47
2816 2840 0.597072 GGCCTTCCTCGACCTATACG 59.403 60.000 0.00 0.00 0.00 3.06
2817 2841 0.039346 GCCTTCCTCGACCTATACGC 60.039 60.000 0.00 0.00 0.00 4.42
2818 2842 0.597072 CCTTCCTCGACCTATACGCC 59.403 60.000 0.00 0.00 0.00 5.68
2819 2843 1.315690 CTTCCTCGACCTATACGCCA 58.684 55.000 0.00 0.00 0.00 5.69
2820 2844 1.887198 CTTCCTCGACCTATACGCCAT 59.113 52.381 0.00 0.00 0.00 4.40
2821 2845 1.531423 TCCTCGACCTATACGCCATC 58.469 55.000 0.00 0.00 0.00 3.51
2822 2846 0.168348 CCTCGACCTATACGCCATCG 59.832 60.000 0.00 0.00 42.43 3.84
2823 2847 0.454620 CTCGACCTATACGCCATCGC 60.455 60.000 0.00 0.00 39.84 4.58
2824 2848 1.443872 CGACCTATACGCCATCGCC 60.444 63.158 0.00 0.00 39.84 5.54
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 1.019673 CAAGTTGCGATCCATCCCAG 58.980 55.000 0.00 0.00 0.00 4.45
107 108 3.867493 TCGCATCAGATCTTCACATGTTC 59.133 43.478 0.00 0.00 0.00 3.18
108 109 3.865446 TCGCATCAGATCTTCACATGTT 58.135 40.909 0.00 0.00 0.00 2.71
149 150 1.078823 TCTTGCCCTTCTCTACTCCCA 59.921 52.381 0.00 0.00 0.00 4.37
165 166 2.669434 CCGCCAATGCATTTTTCTCTTG 59.331 45.455 9.83 0.00 37.32 3.02
174 175 2.502093 CATGCCCGCCAATGCATT 59.498 55.556 5.99 5.99 45.52 3.56
276 280 2.435059 GTCAGGAGTCGCCAAGCC 60.435 66.667 0.00 0.00 40.02 4.35
341 345 0.322816 GTCTTCCAGATTGCCCTGCA 60.323 55.000 0.00 0.00 36.47 4.41
381 385 2.357760 GCCTGCCACGTAACCGAA 60.358 61.111 0.00 0.00 37.88 4.30
390 394 0.378257 CATGTTGTATCGCCTGCCAC 59.622 55.000 0.00 0.00 0.00 5.01
453 457 1.274728 CAGATCCTTATGGCTCTCCCG 59.725 57.143 0.00 0.00 36.75 5.14
465 470 0.472734 AGCTATCCCGCCAGATCCTT 60.473 55.000 0.00 0.00 0.00 3.36
477 482 4.566488 CCATTCCTTGGTATCCAGCTATCC 60.566 50.000 0.00 0.00 40.99 2.59
507 512 3.053917 GTCCTTGAGGGGTAATTGGCTTA 60.054 47.826 0.00 0.00 35.41 3.09
514 519 1.141053 GCATCGTCCTTGAGGGGTAAT 59.859 52.381 0.00 0.00 35.41 1.89
561 567 7.061054 CCATATTCCATGCTCCATGATTATCT 58.939 38.462 6.77 0.00 43.81 1.98
567 573 3.560668 GCTCCATATTCCATGCTCCATGA 60.561 47.826 6.77 0.00 43.81 3.07
588 594 4.282873 GCAAAAATATGCTCCGAACTAGC 58.717 43.478 0.00 0.00 43.06 3.42
603 610 1.215117 CGCATCCACCGGCAAAAAT 59.785 52.632 0.00 0.00 0.00 1.82
651 661 1.302511 CAAGTCGTCCCCCAACCTG 60.303 63.158 0.00 0.00 0.00 4.00
663 673 1.675310 TTCCCATGCCAGCAAGTCG 60.675 57.895 0.00 0.00 0.00 4.18
818 828 4.476479 AGATTTGAACCTTAGGAGGAGCAT 59.524 41.667 4.77 0.00 46.74 3.79
836 846 2.084546 GTAGCCGCCAAGTGAAGATTT 58.915 47.619 0.00 0.00 0.00 2.17
1070 1092 0.620556 ATCCGGCAGATCACAAAGGT 59.379 50.000 0.00 0.00 0.00 3.50
1153 1175 2.047655 CGGCGGCTTCTTGTGGTA 60.048 61.111 7.61 0.00 0.00 3.25
1196 1218 1.514443 GAGTCGACGTAGCTGGTGC 60.514 63.158 10.46 0.00 40.05 5.01
1280 1302 1.004200 ACGATCCGTTTGGGGACAC 60.004 57.895 0.00 0.00 39.34 3.67
1415 1437 0.175531 TTCGCTGCGAAGGATCATGA 59.824 50.000 31.14 8.29 41.05 3.07
1435 1457 2.564947 AGGAGAAGATGATATCACCGGC 59.435 50.000 7.78 0.00 0.00 6.13
1520 1542 1.357258 CTGCAGTGCTAGGTTGAGCG 61.357 60.000 17.60 0.00 45.99 5.03
1617 1639 3.722082 CGACAAGCATAGCAAAACGAGAC 60.722 47.826 0.00 0.00 0.00 3.36
1663 1685 8.896722 TGAACTACCTTTATTTCTCTACCTCT 57.103 34.615 0.00 0.00 0.00 3.69
1681 1703 5.293814 TCTGCTCTCTACGTACATGAACTAC 59.706 44.000 0.00 0.00 0.00 2.73
1710 1732 2.203800 TCGCAAGATAGTGGCTTACG 57.796 50.000 0.00 0.00 45.01 3.18
1855 1879 9.185680 ACCTATTTTCTCCAATGTAAATACACC 57.814 33.333 0.00 0.00 39.30 4.16
1860 1884 9.942850 CCAAAACCTATTTTCTCCAATGTAAAT 57.057 29.630 0.00 0.00 35.79 1.40
1861 1885 8.371699 CCCAAAACCTATTTTCTCCAATGTAAA 58.628 33.333 0.00 0.00 35.79 2.01
1862 1886 7.038658 CCCCAAAACCTATTTTCTCCAATGTAA 60.039 37.037 0.00 0.00 35.79 2.41
1863 1887 6.439058 CCCCAAAACCTATTTTCTCCAATGTA 59.561 38.462 0.00 0.00 35.79 2.29
1864 1888 5.248248 CCCCAAAACCTATTTTCTCCAATGT 59.752 40.000 0.00 0.00 35.79 2.71
1865 1889 5.338300 CCCCCAAAACCTATTTTCTCCAATG 60.338 44.000 0.00 0.00 35.79 2.82
1866 1890 4.782691 CCCCCAAAACCTATTTTCTCCAAT 59.217 41.667 0.00 0.00 35.79 3.16
1867 1891 4.164204 CCCCCAAAACCTATTTTCTCCAA 58.836 43.478 0.00 0.00 35.79 3.53
1868 1892 3.143168 ACCCCCAAAACCTATTTTCTCCA 59.857 43.478 0.00 0.00 35.79 3.86
1869 1893 3.786553 ACCCCCAAAACCTATTTTCTCC 58.213 45.455 0.00 0.00 35.79 3.71
1870 1894 6.250711 TCTAACCCCCAAAACCTATTTTCTC 58.749 40.000 0.00 0.00 35.79 2.87
1871 1895 6.222227 TCTAACCCCCAAAACCTATTTTCT 57.778 37.500 0.00 0.00 35.79 2.52
1872 1896 5.105473 GCTCTAACCCCCAAAACCTATTTTC 60.105 44.000 0.00 0.00 35.79 2.29
1873 1897 4.775780 GCTCTAACCCCCAAAACCTATTTT 59.224 41.667 0.00 0.00 38.61 1.82
1874 1898 4.350245 GCTCTAACCCCCAAAACCTATTT 58.650 43.478 0.00 0.00 0.00 1.40
1875 1899 3.623954 CGCTCTAACCCCCAAAACCTATT 60.624 47.826 0.00 0.00 0.00 1.73
1876 1900 2.092592 CGCTCTAACCCCCAAAACCTAT 60.093 50.000 0.00 0.00 0.00 2.57
1877 1901 1.279846 CGCTCTAACCCCCAAAACCTA 59.720 52.381 0.00 0.00 0.00 3.08
1878 1902 0.037734 CGCTCTAACCCCCAAAACCT 59.962 55.000 0.00 0.00 0.00 3.50
1879 1903 1.592400 GCGCTCTAACCCCCAAAACC 61.592 60.000 0.00 0.00 0.00 3.27
1880 1904 0.891904 TGCGCTCTAACCCCCAAAAC 60.892 55.000 9.73 0.00 0.00 2.43
1881 1905 0.039035 ATGCGCTCTAACCCCCAAAA 59.961 50.000 9.73 0.00 0.00 2.44
1882 1906 0.679640 CATGCGCTCTAACCCCCAAA 60.680 55.000 9.73 0.00 0.00 3.28
1883 1907 1.077787 CATGCGCTCTAACCCCCAA 60.078 57.895 9.73 0.00 0.00 4.12
1884 1908 2.589540 CATGCGCTCTAACCCCCA 59.410 61.111 9.73 0.00 0.00 4.96
1885 1909 2.056906 ATCCATGCGCTCTAACCCCC 62.057 60.000 9.73 0.00 0.00 5.40
1886 1910 0.886490 CATCCATGCGCTCTAACCCC 60.886 60.000 9.73 0.00 0.00 4.95
1887 1911 0.179045 ACATCCATGCGCTCTAACCC 60.179 55.000 9.73 0.00 0.00 4.11
1888 1912 2.526304 TACATCCATGCGCTCTAACC 57.474 50.000 9.73 0.00 0.00 2.85
1889 1913 3.187227 CCATTACATCCATGCGCTCTAAC 59.813 47.826 9.73 0.00 0.00 2.34
1890 1914 3.070878 TCCATTACATCCATGCGCTCTAA 59.929 43.478 9.73 0.00 0.00 2.10
1891 1915 2.632512 TCCATTACATCCATGCGCTCTA 59.367 45.455 9.73 0.00 0.00 2.43
1892 1916 1.417517 TCCATTACATCCATGCGCTCT 59.582 47.619 9.73 0.00 0.00 4.09
1893 1917 1.882912 TCCATTACATCCATGCGCTC 58.117 50.000 9.73 0.00 0.00 5.03
1894 1918 2.156917 CATCCATTACATCCATGCGCT 58.843 47.619 9.73 0.00 0.00 5.92
1895 1919 1.881973 ACATCCATTACATCCATGCGC 59.118 47.619 0.00 0.00 0.00 6.09
1896 1920 4.095334 CCATACATCCATTACATCCATGCG 59.905 45.833 0.00 0.00 0.00 4.73
1897 1921 4.400251 CCCATACATCCATTACATCCATGC 59.600 45.833 0.00 0.00 0.00 4.06
1898 1922 5.818887 TCCCATACATCCATTACATCCATG 58.181 41.667 0.00 0.00 0.00 3.66
1899 1923 6.467490 TTCCCATACATCCATTACATCCAT 57.533 37.500 0.00 0.00 0.00 3.41
1900 1924 5.222109 CCTTCCCATACATCCATTACATCCA 60.222 44.000 0.00 0.00 0.00 3.41
1901 1925 5.256474 CCTTCCCATACATCCATTACATCC 58.744 45.833 0.00 0.00 0.00 3.51
1902 1926 5.256474 CCCTTCCCATACATCCATTACATC 58.744 45.833 0.00 0.00 0.00 3.06
1903 1927 4.509122 GCCCTTCCCATACATCCATTACAT 60.509 45.833 0.00 0.00 0.00 2.29
1904 1928 3.181434 GCCCTTCCCATACATCCATTACA 60.181 47.826 0.00 0.00 0.00 2.41
1905 1929 3.074538 AGCCCTTCCCATACATCCATTAC 59.925 47.826 0.00 0.00 0.00 1.89
1906 1930 3.335748 AGCCCTTCCCATACATCCATTA 58.664 45.455 0.00 0.00 0.00 1.90
1907 1931 2.146998 AGCCCTTCCCATACATCCATT 58.853 47.619 0.00 0.00 0.00 3.16
1908 1932 1.838611 AGCCCTTCCCATACATCCAT 58.161 50.000 0.00 0.00 0.00 3.41
1909 1933 1.607225 AAGCCCTTCCCATACATCCA 58.393 50.000 0.00 0.00 0.00 3.41
1910 1934 2.091885 TCAAAGCCCTTCCCATACATCC 60.092 50.000 0.00 0.00 0.00 3.51
1911 1935 3.217626 CTCAAAGCCCTTCCCATACATC 58.782 50.000 0.00 0.00 0.00 3.06
1912 1936 2.091665 CCTCAAAGCCCTTCCCATACAT 60.092 50.000 0.00 0.00 0.00 2.29
1913 1937 1.284785 CCTCAAAGCCCTTCCCATACA 59.715 52.381 0.00 0.00 0.00 2.29
1914 1938 1.285078 ACCTCAAAGCCCTTCCCATAC 59.715 52.381 0.00 0.00 0.00 2.39
1915 1939 1.681229 ACCTCAAAGCCCTTCCCATA 58.319 50.000 0.00 0.00 0.00 2.74
1916 1940 0.786435 AACCTCAAAGCCCTTCCCAT 59.214 50.000 0.00 0.00 0.00 4.00
1917 1941 0.560688 AAACCTCAAAGCCCTTCCCA 59.439 50.000 0.00 0.00 0.00 4.37
1918 1942 1.717032 AAAACCTCAAAGCCCTTCCC 58.283 50.000 0.00 0.00 0.00 3.97
1942 1966 9.550406 CCTTAATAATTTATCTCACCCACGTAA 57.450 33.333 0.00 0.00 0.00 3.18
1943 1967 8.152246 CCCTTAATAATTTATCTCACCCACGTA 58.848 37.037 0.00 0.00 0.00 3.57
1944 1968 6.996282 CCCTTAATAATTTATCTCACCCACGT 59.004 38.462 0.00 0.00 0.00 4.49
1945 1969 6.072673 GCCCTTAATAATTTATCTCACCCACG 60.073 42.308 0.00 0.00 0.00 4.94
1946 1970 6.775629 TGCCCTTAATAATTTATCTCACCCAC 59.224 38.462 0.00 0.00 0.00 4.61
1947 1971 6.916909 TGCCCTTAATAATTTATCTCACCCA 58.083 36.000 0.00 0.00 0.00 4.51
1948 1972 8.306761 CAATGCCCTTAATAATTTATCTCACCC 58.693 37.037 0.00 0.00 0.00 4.61
1949 1973 8.306761 CCAATGCCCTTAATAATTTATCTCACC 58.693 37.037 0.00 0.00 0.00 4.02
1950 1974 8.860088 ACCAATGCCCTTAATAATTTATCTCAC 58.140 33.333 0.00 0.00 0.00 3.51
1951 1975 8.859090 CACCAATGCCCTTAATAATTTATCTCA 58.141 33.333 0.00 0.00 0.00 3.27
1952 1976 8.306761 CCACCAATGCCCTTAATAATTTATCTC 58.693 37.037 0.00 0.00 0.00 2.75
1953 1977 7.235399 CCCACCAATGCCCTTAATAATTTATCT 59.765 37.037 0.00 0.00 0.00 1.98
1954 1978 7.016170 ACCCACCAATGCCCTTAATAATTTATC 59.984 37.037 0.00 0.00 0.00 1.75
1955 1979 6.849164 ACCCACCAATGCCCTTAATAATTTAT 59.151 34.615 0.00 0.00 0.00 1.40
1956 1980 6.206042 ACCCACCAATGCCCTTAATAATTTA 58.794 36.000 0.00 0.00 0.00 1.40
1957 1981 5.036236 ACCCACCAATGCCCTTAATAATTT 58.964 37.500 0.00 0.00 0.00 1.82
1958 1982 4.630177 ACCCACCAATGCCCTTAATAATT 58.370 39.130 0.00 0.00 0.00 1.40
1959 1983 4.279288 ACCCACCAATGCCCTTAATAAT 57.721 40.909 0.00 0.00 0.00 1.28
1960 1984 3.767309 ACCCACCAATGCCCTTAATAA 57.233 42.857 0.00 0.00 0.00 1.40
1961 1985 4.883021 TTACCCACCAATGCCCTTAATA 57.117 40.909 0.00 0.00 0.00 0.98
1962 1986 3.767309 TTACCCACCAATGCCCTTAAT 57.233 42.857 0.00 0.00 0.00 1.40
1963 1987 3.767309 ATTACCCACCAATGCCCTTAA 57.233 42.857 0.00 0.00 0.00 1.85
1964 1988 3.767309 AATTACCCACCAATGCCCTTA 57.233 42.857 0.00 0.00 0.00 2.69
1965 1989 2.640284 AATTACCCACCAATGCCCTT 57.360 45.000 0.00 0.00 0.00 3.95
1966 1990 2.640284 AAATTACCCACCAATGCCCT 57.360 45.000 0.00 0.00 0.00 5.19
1967 1991 3.712016 AAAAATTACCCACCAATGCCC 57.288 42.857 0.00 0.00 0.00 5.36
1968 1992 6.649155 AGATTAAAAATTACCCACCAATGCC 58.351 36.000 0.00 0.00 0.00 4.40
1969 1993 8.560355 AAAGATTAAAAATTACCCACCAATGC 57.440 30.769 0.00 0.00 0.00 3.56
1984 2008 9.844257 ACAACCATTGGATTGAAAAGATTAAAA 57.156 25.926 10.37 0.00 34.12 1.52
1985 2009 9.270640 CACAACCATTGGATTGAAAAGATTAAA 57.729 29.630 10.37 0.00 34.12 1.52
1986 2010 7.387397 GCACAACCATTGGATTGAAAAGATTAA 59.613 33.333 10.37 0.00 34.12 1.40
1987 2011 6.873076 GCACAACCATTGGATTGAAAAGATTA 59.127 34.615 10.37 0.00 34.12 1.75
1988 2012 5.702209 GCACAACCATTGGATTGAAAAGATT 59.298 36.000 10.37 0.00 34.12 2.40
1989 2013 5.012354 AGCACAACCATTGGATTGAAAAGAT 59.988 36.000 10.37 1.11 34.12 2.40
1990 2014 4.344679 AGCACAACCATTGGATTGAAAAGA 59.655 37.500 10.37 0.00 34.12 2.52
1991 2015 4.634199 AGCACAACCATTGGATTGAAAAG 58.366 39.130 10.37 5.36 34.12 2.27
1992 2016 4.686191 AGCACAACCATTGGATTGAAAA 57.314 36.364 10.37 0.00 34.12 2.29
1993 2017 4.141756 ACAAGCACAACCATTGGATTGAAA 60.142 37.500 10.37 0.00 34.03 2.69
1994 2018 3.387374 ACAAGCACAACCATTGGATTGAA 59.613 39.130 10.37 0.00 34.03 2.69
1995 2019 2.964464 ACAAGCACAACCATTGGATTGA 59.036 40.909 10.37 0.00 34.03 2.57
1996 2020 3.006110 AGACAAGCACAACCATTGGATTG 59.994 43.478 10.37 12.22 35.13 2.67
1997 2021 3.233507 AGACAAGCACAACCATTGGATT 58.766 40.909 10.37 0.00 34.12 3.01
1998 2022 2.880443 AGACAAGCACAACCATTGGAT 58.120 42.857 10.37 0.00 34.12 3.41
1999 2023 2.363306 AGACAAGCACAACCATTGGA 57.637 45.000 10.37 0.00 34.12 3.53
2000 2024 4.218200 TGATTAGACAAGCACAACCATTGG 59.782 41.667 0.00 0.00 34.12 3.16
2001 2025 5.375417 TGATTAGACAAGCACAACCATTG 57.625 39.130 0.00 0.00 0.00 2.82
2002 2026 6.594788 ATTGATTAGACAAGCACAACCATT 57.405 33.333 0.00 0.00 33.22 3.16
2003 2027 6.594788 AATTGATTAGACAAGCACAACCAT 57.405 33.333 0.00 0.00 33.22 3.55
2004 2028 6.403866 AAATTGATTAGACAAGCACAACCA 57.596 33.333 0.00 0.00 33.22 3.67
2005 2029 8.810652 TTTAAATTGATTAGACAAGCACAACC 57.189 30.769 0.00 0.00 33.22 3.77
2469 2493 9.301153 ACGGTTAGTATTTACTAATTAACGTGG 57.699 33.333 19.48 7.27 46.73 4.94
2480 2504 9.321562 CCACATGATTAACGGTTAGTATTTACT 57.678 33.333 0.00 0.00 40.24 2.24
2481 2505 8.553696 CCCACATGATTAACGGTTAGTATTTAC 58.446 37.037 0.00 0.00 0.00 2.01
2482 2506 7.716123 CCCCACATGATTAACGGTTAGTATTTA 59.284 37.037 0.00 0.00 0.00 1.40
2483 2507 6.544564 CCCCACATGATTAACGGTTAGTATTT 59.455 38.462 0.00 0.00 0.00 1.40
2484 2508 6.059484 CCCCACATGATTAACGGTTAGTATT 58.941 40.000 0.00 0.00 0.00 1.89
2485 2509 5.617252 CCCCACATGATTAACGGTTAGTAT 58.383 41.667 0.00 0.00 0.00 2.12
2486 2510 4.683942 GCCCCACATGATTAACGGTTAGTA 60.684 45.833 0.00 0.00 0.00 1.82
2487 2511 3.881220 CCCCACATGATTAACGGTTAGT 58.119 45.455 0.00 0.00 0.00 2.24
2488 2512 2.616842 GCCCCACATGATTAACGGTTAG 59.383 50.000 0.00 0.00 0.00 2.34
2489 2513 2.645802 GCCCCACATGATTAACGGTTA 58.354 47.619 0.00 0.00 0.00 2.85
2490 2514 1.470051 GCCCCACATGATTAACGGTT 58.530 50.000 0.00 0.00 0.00 4.44
2491 2515 0.395173 GGCCCCACATGATTAACGGT 60.395 55.000 0.00 0.00 0.00 4.83
2492 2516 0.395036 TGGCCCCACATGATTAACGG 60.395 55.000 0.00 0.00 0.00 4.44
2493 2517 1.468985 TTGGCCCCACATGATTAACG 58.531 50.000 0.00 0.00 0.00 3.18
2494 2518 3.971245 TTTTGGCCCCACATGATTAAC 57.029 42.857 0.00 0.00 0.00 2.01
2495 2519 6.821616 ATTATTTTGGCCCCACATGATTAA 57.178 33.333 0.00 0.00 0.00 1.40
2496 2520 7.470702 CGTTATTATTTTGGCCCCACATGATTA 60.471 37.037 0.00 0.00 0.00 1.75
2497 2521 6.591001 GTTATTATTTTGGCCCCACATGATT 58.409 36.000 0.00 0.00 0.00 2.57
2498 2522 5.221422 CGTTATTATTTTGGCCCCACATGAT 60.221 40.000 0.00 0.00 0.00 2.45
2499 2523 4.098654 CGTTATTATTTTGGCCCCACATGA 59.901 41.667 0.00 0.00 0.00 3.07
2500 2524 4.367450 CGTTATTATTTTGGCCCCACATG 58.633 43.478 0.00 0.00 0.00 3.21
2501 2525 3.386402 CCGTTATTATTTTGGCCCCACAT 59.614 43.478 0.00 0.00 0.00 3.21
2502 2526 2.761208 CCGTTATTATTTTGGCCCCACA 59.239 45.455 0.00 0.00 0.00 4.17
2503 2527 2.761767 ACCGTTATTATTTTGGCCCCAC 59.238 45.455 0.00 0.00 0.00 4.61
2504 2528 3.103080 ACCGTTATTATTTTGGCCCCA 57.897 42.857 0.00 0.00 0.00 4.96
2505 2529 4.475051 AAACCGTTATTATTTTGGCCCC 57.525 40.909 0.00 0.00 0.00 5.80
2506 2530 6.453926 TCTAAACCGTTATTATTTTGGCCC 57.546 37.500 0.00 0.00 0.00 5.80
2519 2543 9.503399 GGATTCTATGGATTAATCTAAACCGTT 57.497 33.333 14.95 0.00 33.69 4.44
2520 2544 8.881262 AGGATTCTATGGATTAATCTAAACCGT 58.119 33.333 14.95 3.09 33.69 4.83
2521 2545 9.726438 AAGGATTCTATGGATTAATCTAAACCG 57.274 33.333 14.95 0.65 33.69 4.44
2544 2568 7.040686 TTCTTTTAAGATGGAAACTCCGAAAGG 60.041 37.037 0.00 0.00 43.78 3.11
2545 2569 7.435068 TCTTTTAAGATGGAAACTCCGAAAG 57.565 36.000 0.00 0.00 40.17 2.62
2546 2570 7.811117 TTCTTTTAAGATGGAAACTCCGAAA 57.189 32.000 0.00 0.00 40.17 3.46
2547 2571 7.811117 TTTCTTTTAAGATGGAAACTCCGAA 57.189 32.000 0.00 0.00 40.17 4.30
2548 2572 7.811117 TTTTCTTTTAAGATGGAAACTCCGA 57.189 32.000 0.00 0.00 40.17 4.55
2573 2597 6.850752 TCTTTTGAGAAGGAACCTGTTTTT 57.149 33.333 0.00 0.00 0.00 1.94
2574 2598 6.210584 TGTTCTTTTGAGAAGGAACCTGTTTT 59.789 34.615 10.36 0.00 45.90 2.43
2575 2599 5.714806 TGTTCTTTTGAGAAGGAACCTGTTT 59.285 36.000 10.36 0.00 45.90 2.83
2576 2600 5.261216 TGTTCTTTTGAGAAGGAACCTGTT 58.739 37.500 10.36 0.00 45.90 3.16
2577 2601 4.855340 TGTTCTTTTGAGAAGGAACCTGT 58.145 39.130 10.36 0.00 45.90 4.00
2578 2602 4.276926 CCTGTTCTTTTGAGAAGGAACCTG 59.723 45.833 10.36 5.16 45.90 4.00
2579 2603 4.079730 ACCTGTTCTTTTGAGAAGGAACCT 60.080 41.667 10.36 0.00 45.90 3.50
2580 2604 4.207955 ACCTGTTCTTTTGAGAAGGAACC 58.792 43.478 10.36 0.00 45.90 3.62
2581 2605 5.836821 AACCTGTTCTTTTGAGAAGGAAC 57.163 39.130 7.06 7.06 46.36 3.62
2582 2606 5.359860 GGAAACCTGTTCTTTTGAGAAGGAA 59.640 40.000 0.00 0.00 36.75 3.36
2583 2607 4.887655 GGAAACCTGTTCTTTTGAGAAGGA 59.112 41.667 0.00 0.00 36.75 3.36
2584 2608 4.644685 TGGAAACCTGTTCTTTTGAGAAGG 59.355 41.667 0.00 0.00 38.26 3.46
2585 2609 5.835113 TGGAAACCTGTTCTTTTGAGAAG 57.165 39.130 0.00 0.00 0.00 2.85
2586 2610 6.129179 AGATGGAAACCTGTTCTTTTGAGAA 58.871 36.000 0.00 0.00 0.00 2.87
2587 2611 5.694995 AGATGGAAACCTGTTCTTTTGAGA 58.305 37.500 0.00 0.00 0.00 3.27
2588 2612 5.532406 TGAGATGGAAACCTGTTCTTTTGAG 59.468 40.000 0.00 0.00 0.00 3.02
2589 2613 5.445069 TGAGATGGAAACCTGTTCTTTTGA 58.555 37.500 0.00 0.00 0.00 2.69
2590 2614 5.772825 TGAGATGGAAACCTGTTCTTTTG 57.227 39.130 0.00 0.00 0.00 2.44
2591 2615 6.790232 TTTGAGATGGAAACCTGTTCTTTT 57.210 33.333 0.00 0.00 0.00 2.27
2592 2616 6.607198 TCTTTTGAGATGGAAACCTGTTCTTT 59.393 34.615 0.00 0.00 0.00 2.52
2593 2617 6.129179 TCTTTTGAGATGGAAACCTGTTCTT 58.871 36.000 0.00 0.00 0.00 2.52
2594 2618 5.694995 TCTTTTGAGATGGAAACCTGTTCT 58.305 37.500 0.00 0.00 0.00 3.01
2595 2619 6.391227 TTCTTTTGAGATGGAAACCTGTTC 57.609 37.500 0.00 0.00 0.00 3.18
2596 2620 6.607198 TCTTTCTTTTGAGATGGAAACCTGTT 59.393 34.615 0.00 0.00 0.00 3.16
2597 2621 6.129179 TCTTTCTTTTGAGATGGAAACCTGT 58.871 36.000 0.00 0.00 0.00 4.00
2598 2622 6.639632 TCTTTCTTTTGAGATGGAAACCTG 57.360 37.500 0.00 0.00 0.00 4.00
2599 2623 6.607198 TGTTCTTTCTTTTGAGATGGAAACCT 59.393 34.615 0.00 0.00 0.00 3.50
2600 2624 6.697455 GTGTTCTTTCTTTTGAGATGGAAACC 59.303 38.462 0.00 0.00 0.00 3.27
2601 2625 7.257722 TGTGTTCTTTCTTTTGAGATGGAAAC 58.742 34.615 0.00 0.00 0.00 2.78
2602 2626 7.339212 TCTGTGTTCTTTCTTTTGAGATGGAAA 59.661 33.333 0.00 0.00 0.00 3.13
2603 2627 6.828273 TCTGTGTTCTTTCTTTTGAGATGGAA 59.172 34.615 0.00 0.00 0.00 3.53
2604 2628 6.260936 GTCTGTGTTCTTTCTTTTGAGATGGA 59.739 38.462 0.00 0.00 0.00 3.41
2605 2629 6.261826 AGTCTGTGTTCTTTCTTTTGAGATGG 59.738 38.462 0.00 0.00 0.00 3.51
2606 2630 7.256756 AGTCTGTGTTCTTTCTTTTGAGATG 57.743 36.000 0.00 0.00 0.00 2.90
2607 2631 9.566432 AATAGTCTGTGTTCTTTCTTTTGAGAT 57.434 29.630 0.00 0.00 0.00 2.75
2608 2632 8.964476 AATAGTCTGTGTTCTTTCTTTTGAGA 57.036 30.769 0.00 0.00 0.00 3.27
2615 2639 9.566432 AGATCAAAAATAGTCTGTGTTCTTTCT 57.434 29.630 0.00 0.00 0.00 2.52
2616 2640 9.604626 CAGATCAAAAATAGTCTGTGTTCTTTC 57.395 33.333 0.00 0.00 34.76 2.62
2617 2641 9.342308 TCAGATCAAAAATAGTCTGTGTTCTTT 57.658 29.630 0.00 0.00 39.22 2.52
2618 2642 8.908786 TCAGATCAAAAATAGTCTGTGTTCTT 57.091 30.769 0.00 0.00 39.22 2.52
2645 2669 9.840427 CAACCGTGACATTTCTTTTAATCTAAT 57.160 29.630 0.00 0.00 0.00 1.73
2646 2670 7.806014 GCAACCGTGACATTTCTTTTAATCTAA 59.194 33.333 0.00 0.00 0.00 2.10
2647 2671 7.041030 TGCAACCGTGACATTTCTTTTAATCTA 60.041 33.333 0.00 0.00 0.00 1.98
2648 2672 6.149633 GCAACCGTGACATTTCTTTTAATCT 58.850 36.000 0.00 0.00 0.00 2.40
2649 2673 5.918011 TGCAACCGTGACATTTCTTTTAATC 59.082 36.000 0.00 0.00 0.00 1.75
2650 2674 5.837437 TGCAACCGTGACATTTCTTTTAAT 58.163 33.333 0.00 0.00 0.00 1.40
2651 2675 5.250235 TGCAACCGTGACATTTCTTTTAA 57.750 34.783 0.00 0.00 0.00 1.52
2652 2676 4.902443 TGCAACCGTGACATTTCTTTTA 57.098 36.364 0.00 0.00 0.00 1.52
2653 2677 3.791973 TGCAACCGTGACATTTCTTTT 57.208 38.095 0.00 0.00 0.00 2.27
2654 2678 3.791973 TTGCAACCGTGACATTTCTTT 57.208 38.095 0.00 0.00 0.00 2.52
2655 2679 3.130340 AGTTTGCAACCGTGACATTTCTT 59.870 39.130 0.00 0.00 0.00 2.52
2656 2680 2.687935 AGTTTGCAACCGTGACATTTCT 59.312 40.909 0.00 0.00 0.00 2.52
2657 2681 3.042887 GAGTTTGCAACCGTGACATTTC 58.957 45.455 0.00 0.00 0.00 2.17
2658 2682 2.687935 AGAGTTTGCAACCGTGACATTT 59.312 40.909 0.00 0.00 0.00 2.32
2659 2683 2.297701 AGAGTTTGCAACCGTGACATT 58.702 42.857 0.00 0.00 0.00 2.71
2660 2684 1.967319 AGAGTTTGCAACCGTGACAT 58.033 45.000 0.00 0.00 0.00 3.06
2661 2685 2.605837 TAGAGTTTGCAACCGTGACA 57.394 45.000 0.00 0.00 0.00 3.58
2662 2686 2.870411 AGTTAGAGTTTGCAACCGTGAC 59.130 45.455 0.00 0.00 0.00 3.67
2663 2687 3.188159 AGTTAGAGTTTGCAACCGTGA 57.812 42.857 0.00 0.00 0.00 4.35
2664 2688 4.510340 AGTTAGTTAGAGTTTGCAACCGTG 59.490 41.667 0.00 0.00 0.00 4.94
2665 2689 4.700700 AGTTAGTTAGAGTTTGCAACCGT 58.299 39.130 0.00 0.00 0.00 4.83
2666 2690 5.668558 AAGTTAGTTAGAGTTTGCAACCG 57.331 39.130 0.00 0.00 0.00 4.44
2667 2691 7.012044 TGAGAAAGTTAGTTAGAGTTTGCAACC 59.988 37.037 0.00 0.00 0.00 3.77
2668 2692 7.851472 GTGAGAAAGTTAGTTAGAGTTTGCAAC 59.149 37.037 0.00 0.00 0.00 4.17
2669 2693 7.551262 TGTGAGAAAGTTAGTTAGAGTTTGCAA 59.449 33.333 0.00 0.00 0.00 4.08
2670 2694 7.045416 TGTGAGAAAGTTAGTTAGAGTTTGCA 58.955 34.615 0.00 0.00 0.00 4.08
2671 2695 7.478520 TGTGAGAAAGTTAGTTAGAGTTTGC 57.521 36.000 0.00 0.00 0.00 3.68
2672 2696 9.046296 ACATGTGAGAAAGTTAGTTAGAGTTTG 57.954 33.333 0.00 0.00 0.00 2.93
2673 2697 9.046296 CACATGTGAGAAAGTTAGTTAGAGTTT 57.954 33.333 21.64 0.00 0.00 2.66
2674 2698 8.204836 ACACATGTGAGAAAGTTAGTTAGAGTT 58.795 33.333 31.94 0.00 0.00 3.01
2675 2699 7.727181 ACACATGTGAGAAAGTTAGTTAGAGT 58.273 34.615 31.94 0.00 0.00 3.24
2676 2700 9.347934 CTACACATGTGAGAAAGTTAGTTAGAG 57.652 37.037 31.94 0.00 0.00 2.43
2677 2701 8.857098 ACTACACATGTGAGAAAGTTAGTTAGA 58.143 33.333 31.94 0.00 0.00 2.10
2678 2702 9.130312 GACTACACATGTGAGAAAGTTAGTTAG 57.870 37.037 31.94 18.63 0.00 2.34
2679 2703 7.806487 CGACTACACATGTGAGAAAGTTAGTTA 59.194 37.037 31.94 8.36 0.00 2.24
2680 2704 6.641314 CGACTACACATGTGAGAAAGTTAGTT 59.359 38.462 31.94 7.59 0.00 2.24
2681 2705 6.150318 CGACTACACATGTGAGAAAGTTAGT 58.850 40.000 31.94 23.82 0.00 2.24
2682 2706 6.150318 ACGACTACACATGTGAGAAAGTTAG 58.850 40.000 31.94 21.05 0.00 2.34
2683 2707 6.080648 ACGACTACACATGTGAGAAAGTTA 57.919 37.500 31.94 10.98 0.00 2.24
2684 2708 4.945246 ACGACTACACATGTGAGAAAGTT 58.055 39.130 31.94 10.37 0.00 2.66
2685 2709 4.037565 TGACGACTACACATGTGAGAAAGT 59.962 41.667 31.94 24.70 0.00 2.66
2686 2710 4.546570 TGACGACTACACATGTGAGAAAG 58.453 43.478 31.94 22.09 0.00 2.62
2687 2711 4.577834 TGACGACTACACATGTGAGAAA 57.422 40.909 31.94 12.79 0.00 2.52
2688 2712 4.577834 TTGACGACTACACATGTGAGAA 57.422 40.909 31.94 15.16 0.00 2.87
2689 2713 4.577834 TTTGACGACTACACATGTGAGA 57.422 40.909 31.94 17.44 0.00 3.27
2690 2714 5.651172 TTTTTGACGACTACACATGTGAG 57.349 39.130 31.94 23.79 0.00 3.51
2712 2736 8.831715 ACACATGTGAGAAAGTTTTTCTTTTT 57.168 26.923 31.94 0.00 45.15 1.94
2739 2763 7.566760 TGTTGAGAGCATTGTTCTTTTAGAA 57.433 32.000 4.42 0.00 0.00 2.10
2740 2764 7.750229 ATGTTGAGAGCATTGTTCTTTTAGA 57.250 32.000 4.42 0.00 0.00 2.10
2743 2767 9.768662 AAATTATGTTGAGAGCATTGTTCTTTT 57.231 25.926 4.42 0.00 0.00 2.27
2746 2770 9.236006 ACTAAATTATGTTGAGAGCATTGTTCT 57.764 29.630 2.32 2.32 0.00 3.01
2747 2771 9.846248 AACTAAATTATGTTGAGAGCATTGTTC 57.154 29.630 0.00 0.00 0.00 3.18
2749 2773 9.846248 GAAACTAAATTATGTTGAGAGCATTGT 57.154 29.630 0.00 0.00 0.00 2.71
2750 2774 9.294030 GGAAACTAAATTATGTTGAGAGCATTG 57.706 33.333 0.00 0.00 0.00 2.82
2751 2775 9.023962 TGGAAACTAAATTATGTTGAGAGCATT 57.976 29.630 0.00 0.00 0.00 3.56
2752 2776 8.579850 TGGAAACTAAATTATGTTGAGAGCAT 57.420 30.769 0.00 0.00 0.00 3.79
2753 2777 7.994425 TGGAAACTAAATTATGTTGAGAGCA 57.006 32.000 0.00 0.00 0.00 4.26
2754 2778 8.897752 AGATGGAAACTAAATTATGTTGAGAGC 58.102 33.333 0.00 0.00 0.00 4.09
2758 2782 9.739276 ACAGAGATGGAAACTAAATTATGTTGA 57.261 29.630 0.00 0.00 0.00 3.18
2761 2785 9.178758 GGAACAGAGATGGAAACTAAATTATGT 57.821 33.333 0.00 0.00 0.00 2.29
2762 2786 8.338259 CGGAACAGAGATGGAAACTAAATTATG 58.662 37.037 0.00 0.00 0.00 1.90
2763 2787 7.499232 CCGGAACAGAGATGGAAACTAAATTAT 59.501 37.037 0.00 0.00 0.00 1.28
2764 2788 6.821665 CCGGAACAGAGATGGAAACTAAATTA 59.178 38.462 0.00 0.00 0.00 1.40
2765 2789 5.648092 CCGGAACAGAGATGGAAACTAAATT 59.352 40.000 0.00 0.00 0.00 1.82
2766 2790 5.186198 CCGGAACAGAGATGGAAACTAAAT 58.814 41.667 0.00 0.00 0.00 1.40
2767 2791 4.575885 CCGGAACAGAGATGGAAACTAAA 58.424 43.478 0.00 0.00 0.00 1.85
2768 2792 3.618997 GCCGGAACAGAGATGGAAACTAA 60.619 47.826 5.05 0.00 0.00 2.24
2769 2793 2.093658 GCCGGAACAGAGATGGAAACTA 60.094 50.000 5.05 0.00 0.00 2.24
2770 2794 1.339151 GCCGGAACAGAGATGGAAACT 60.339 52.381 5.05 0.00 0.00 2.66
2771 2795 1.087501 GCCGGAACAGAGATGGAAAC 58.912 55.000 5.05 0.00 0.00 2.78
2772 2796 0.984230 AGCCGGAACAGAGATGGAAA 59.016 50.000 5.05 0.00 0.00 3.13
2773 2797 0.537188 GAGCCGGAACAGAGATGGAA 59.463 55.000 5.05 0.00 0.00 3.53
2774 2798 0.324738 AGAGCCGGAACAGAGATGGA 60.325 55.000 5.05 0.00 0.00 3.41
2775 2799 0.103937 GAGAGCCGGAACAGAGATGG 59.896 60.000 5.05 0.00 0.00 3.51
2776 2800 0.103937 GGAGAGCCGGAACAGAGATG 59.896 60.000 5.05 0.00 0.00 2.90
2777 2801 0.032615 AGGAGAGCCGGAACAGAGAT 60.033 55.000 5.05 0.00 39.96 2.75
2778 2802 0.967887 CAGGAGAGCCGGAACAGAGA 60.968 60.000 5.05 0.00 39.96 3.10
2779 2803 1.515020 CAGGAGAGCCGGAACAGAG 59.485 63.158 5.05 0.00 39.96 3.35
2780 2804 1.984570 CCAGGAGAGCCGGAACAGA 60.985 63.158 5.05 0.00 39.96 3.41
2781 2805 2.581354 CCAGGAGAGCCGGAACAG 59.419 66.667 5.05 0.00 39.96 3.16
2782 2806 3.706373 GCCAGGAGAGCCGGAACA 61.706 66.667 5.05 0.00 39.96 3.18
2783 2807 4.475135 GGCCAGGAGAGCCGGAAC 62.475 72.222 5.05 0.00 41.41 3.62
2789 2813 2.907236 GAGGAAGGCCAGGAGAGC 59.093 66.667 5.01 0.00 36.29 4.09
2790 2814 1.380515 TCGAGGAAGGCCAGGAGAG 60.381 63.158 5.01 0.00 36.29 3.20
2791 2815 1.682684 GTCGAGGAAGGCCAGGAGA 60.683 63.158 5.01 0.00 36.29 3.71
2792 2816 2.726351 GGTCGAGGAAGGCCAGGAG 61.726 68.421 5.01 0.00 35.58 3.69
2793 2817 1.870941 TAGGTCGAGGAAGGCCAGGA 61.871 60.000 5.01 0.00 38.64 3.86
2794 2818 0.760945 ATAGGTCGAGGAAGGCCAGG 60.761 60.000 5.01 0.00 38.64 4.45
2795 2819 1.614413 GTATAGGTCGAGGAAGGCCAG 59.386 57.143 5.01 0.00 38.64 4.85
2796 2820 1.700955 GTATAGGTCGAGGAAGGCCA 58.299 55.000 5.01 0.00 38.64 5.36
2797 2821 0.597072 CGTATAGGTCGAGGAAGGCC 59.403 60.000 0.00 0.00 35.78 5.19
2798 2822 0.039346 GCGTATAGGTCGAGGAAGGC 60.039 60.000 0.00 0.00 0.00 4.35
2799 2823 0.597072 GGCGTATAGGTCGAGGAAGG 59.403 60.000 0.00 0.00 0.00 3.46
2800 2824 1.315690 TGGCGTATAGGTCGAGGAAG 58.684 55.000 0.00 0.00 0.00 3.46
2801 2825 1.884579 GATGGCGTATAGGTCGAGGAA 59.115 52.381 0.00 0.00 0.00 3.36
2802 2826 1.531423 GATGGCGTATAGGTCGAGGA 58.469 55.000 0.00 0.00 0.00 3.71
2803 2827 0.168348 CGATGGCGTATAGGTCGAGG 59.832 60.000 0.00 0.00 34.46 4.63
2804 2828 0.454620 GCGATGGCGTATAGGTCGAG 60.455 60.000 7.78 0.00 40.36 4.04
2805 2829 1.577922 GCGATGGCGTATAGGTCGA 59.422 57.895 7.78 0.00 40.36 4.20
2806 2830 1.443872 GGCGATGGCGTATAGGTCG 60.444 63.158 0.00 0.00 41.24 4.79
2807 2831 4.573162 GGCGATGGCGTATAGGTC 57.427 61.111 0.00 0.00 41.24 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.