Multiple sequence alignment - TraesCS7D01G133700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G133700 chr7D 100.000 5741 0 0 701 6441 84808029 84802289 0.000000e+00 10602.0
1 TraesCS7D01G133700 chr7D 81.985 816 119 15 3834 4634 85208288 85207486 0.000000e+00 667.0
2 TraesCS7D01G133700 chr7D 100.000 259 0 0 1 259 84808729 84808471 4.520000e-131 479.0
3 TraesCS7D01G133700 chr7D 83.871 403 35 15 5315 5694 85207062 85206667 2.210000e-94 357.0
4 TraesCS7D01G133700 chr7D 77.419 527 100 16 4107 4628 85349473 85348961 4.880000e-76 296.0
5 TraesCS7D01G133700 chr7B 91.390 2230 148 27 701 2919 34501859 34499663 0.000000e+00 3014.0
6 TraesCS7D01G133700 chr7B 93.276 1517 81 12 1408 2917 34520454 34518952 0.000000e+00 2217.0
7 TraesCS7D01G133700 chr7B 91.555 1421 86 21 5027 6441 34498061 34496669 0.000000e+00 1929.0
8 TraesCS7D01G133700 chr7B 93.973 1095 47 12 3608 4693 34499145 34498061 0.000000e+00 1639.0
9 TraesCS7D01G133700 chr7B 93.416 1048 56 9 3657 4700 34518129 34517091 0.000000e+00 1541.0
10 TraesCS7D01G133700 chr7B 90.672 997 68 16 5023 6013 34517098 34516121 0.000000e+00 1303.0
11 TraesCS7D01G133700 chr7B 92.190 653 25 14 701 1351 34521079 34520451 0.000000e+00 900.0
12 TraesCS7D01G133700 chr7B 95.216 439 16 4 2919 3353 34518851 34518414 0.000000e+00 689.0
13 TraesCS7D01G133700 chr7B 81.985 816 117 17 3834 4633 34823283 34822482 0.000000e+00 665.0
14 TraesCS7D01G133700 chr7B 94.253 435 22 2 2919 3353 34499573 34499142 0.000000e+00 662.0
15 TraesCS7D01G133700 chr7B 83.472 720 68 30 5027 5724 34515713 34515023 1.970000e-174 623.0
16 TraesCS7D01G133700 chr7B 95.396 391 16 1 4303 4693 34516101 34515713 7.090000e-174 621.0
17 TraesCS7D01G133700 chr7B 93.050 259 15 1 1 259 34521591 34521336 6.100000e-100 375.0
18 TraesCS7D01G133700 chr7B 91.353 266 19 3 3348 3610 514515236 514515500 1.710000e-95 361.0
19 TraesCS7D01G133700 chr7B 77.352 627 121 18 4007 4628 34893432 34892822 1.030000e-92 351.0
20 TraesCS7D01G133700 chr7B 88.971 272 17 4 1 259 34502565 34502294 2.240000e-84 324.0
21 TraesCS7D01G133700 chr7B 81.865 386 37 12 5307 5668 34822055 34821679 1.760000e-75 294.0
22 TraesCS7D01G133700 chr7B 83.117 231 11 17 5724 5954 34515067 34514865 1.100000e-42 185.0
23 TraesCS7D01G133700 chr7B 97.872 94 1 1 4773 4866 652980500 652980408 1.860000e-35 161.0
24 TraesCS7D01G133700 chr7B 95.000 100 5 0 4766 4865 157808007 157808106 2.400000e-34 158.0
25 TraesCS7D01G133700 chr7B 96.429 84 3 0 4692 4775 532214867 532214950 8.710000e-29 139.0
26 TraesCS7D01G133700 chr7A 94.275 1607 81 10 1316 2919 85968691 85967093 0.000000e+00 2447.0
27 TraesCS7D01G133700 chr7A 94.153 838 40 7 3608 4442 85966615 85965784 0.000000e+00 1267.0
28 TraesCS7D01G133700 chr7A 87.967 856 56 15 5027 5874 85965439 85964623 0.000000e+00 966.0
29 TraesCS7D01G133700 chr7A 96.546 579 15 3 701 1278 85969260 85968686 0.000000e+00 953.0
30 TraesCS7D01G133700 chr7A 92.115 558 38 4 5885 6441 85964580 85964028 0.000000e+00 782.0
31 TraesCS7D01G133700 chr7A 92.727 440 25 5 2919 3353 85967051 85966614 4.240000e-176 628.0
32 TraesCS7D01G133700 chr7A 80.294 817 107 40 3834 4633 86229264 86228485 9.370000e-158 568.0
33 TraesCS7D01G133700 chr7A 94.595 259 11 1 1 259 85969587 85969332 1.300000e-106 398.0
34 TraesCS7D01G133700 chr7A 93.870 261 9 1 4440 4693 85965699 85965439 2.820000e-103 387.0
35 TraesCS7D01G133700 chr7A 91.985 262 18 3 3351 3609 202997239 202996978 1.320000e-96 364.0
36 TraesCS7D01G133700 chr7A 82.482 411 43 16 5307 5694 86228010 86227606 3.720000e-87 333.0
37 TraesCS7D01G133700 chr7A 95.833 168 7 0 4859 5026 206757372 206757205 8.230000e-69 272.0
38 TraesCS7D01G133700 chr2B 92.395 263 18 2 3352 3612 357919818 357919556 2.190000e-99 374.0
39 TraesCS7D01G133700 chr2B 91.860 258 17 3 3353 3609 417366836 417366582 2.210000e-94 357.0
40 TraesCS7D01G133700 chr2B 91.255 263 20 2 3351 3610 772348761 772348499 7.940000e-94 355.0
41 TraesCS7D01G133700 chr2B 94.828 174 8 1 4859 5031 576085334 576085161 2.960000e-68 270.0
42 TraesCS7D01G133700 chr3D 92.366 262 16 4 3351 3609 447584883 447585143 2.840000e-98 370.0
43 TraesCS7D01G133700 chr3D 91.288 264 19 4 3349 3609 226986766 226986504 2.210000e-94 357.0
44 TraesCS7D01G133700 chr3D 90.000 120 7 3 4773 4887 339850269 339850150 4.020000e-32 150.0
45 TraesCS7D01G133700 chr4D 90.943 265 20 3 3352 3613 479154484 479154221 2.860000e-93 353.0
46 TraesCS7D01G133700 chr4D 94.737 171 9 0 4859 5029 252186984 252186814 3.830000e-67 267.0
47 TraesCS7D01G133700 chr4D 96.296 81 3 0 4693 4773 252187066 252186986 4.050000e-27 134.0
48 TraesCS7D01G133700 chr1D 91.188 261 20 2 3352 3609 97740152 97740412 1.030000e-92 351.0
49 TraesCS7D01G133700 chr2D 96.532 173 6 0 4859 5031 491802787 491802615 2.940000e-73 287.0
50 TraesCS7D01G133700 chr2A 95.376 173 8 0 4859 5031 636904605 636904433 6.360000e-70 276.0
51 TraesCS7D01G133700 chr2A 94.220 173 10 0 4859 5031 232387305 232387133 1.380000e-66 265.0
52 TraesCS7D01G133700 chr2A 89.130 46 4 1 5884 5929 704759871 704759915 1.000000e-03 56.5
53 TraesCS7D01G133700 chr4A 94.706 170 9 0 4860 5029 560903953 560904122 1.380000e-66 265.0
54 TraesCS7D01G133700 chr4A 96.296 81 3 0 4693 4773 560903870 560903950 4.050000e-27 134.0
55 TraesCS7D01G133700 chr3B 94.737 171 7 1 4861 5031 144814510 144814342 1.380000e-66 265.0
56 TraesCS7D01G133700 chr3B 93.714 175 11 0 4857 5031 571760381 571760207 4.950000e-66 263.0
57 TraesCS7D01G133700 chr3B 96.386 83 3 0 4693 4775 571760461 571760379 3.130000e-28 137.0
58 TraesCS7D01G133700 chr3B 96.296 81 3 0 4693 4773 224152406 224152486 4.050000e-27 134.0
59 TraesCS7D01G133700 chr5D 94.000 100 6 0 4765 4864 218761040 218760941 1.120000e-32 152.0
60 TraesCS7D01G133700 chr5A 92.453 106 6 2 4762 4866 546827514 546827618 4.020000e-32 150.0
61 TraesCS7D01G133700 chr4B 93.939 99 6 0 4773 4871 392046783 392046685 4.020000e-32 150.0
62 TraesCS7D01G133700 chr4B 91.818 110 5 4 4773 4881 631442113 631442219 4.020000e-32 150.0
63 TraesCS7D01G133700 chr3A 93.204 103 5 2 4765 4866 488042539 488042640 4.020000e-32 150.0
64 TraesCS7D01G133700 chr1B 85.417 144 14 5 4717 4855 400585358 400585499 6.730000e-30 143.0
65 TraesCS7D01G133700 chr1B 93.976 83 5 0 4691 4773 255482791 255482709 6.780000e-25 126.0
66 TraesCS7D01G133700 chr5B 96.471 85 2 1 4690 4773 253166348 253166432 8.710000e-29 139.0
67 TraesCS7D01G133700 chr1A 96.296 81 3 0 4693 4773 533464756 533464836 4.050000e-27 134.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G133700 chr7D 84802289 84808729 6440 True 5540.500000 10602 100.000000 1 6441 2 chr7D.!!$R2 6440
1 TraesCS7D01G133700 chr7D 85206667 85208288 1621 True 512.000000 667 82.928000 3834 5694 2 chr7D.!!$R3 1860
2 TraesCS7D01G133700 chr7D 85348961 85349473 512 True 296.000000 296 77.419000 4107 4628 1 chr7D.!!$R1 521
3 TraesCS7D01G133700 chr7B 34496669 34502565 5896 True 1513.600000 3014 92.028400 1 6441 5 chr7B.!!$R3 6440
4 TraesCS7D01G133700 chr7B 34514865 34521591 6726 True 939.333333 2217 91.089444 1 6013 9 chr7B.!!$R4 6012
5 TraesCS7D01G133700 chr7B 34821679 34823283 1604 True 479.500000 665 81.925000 3834 5668 2 chr7B.!!$R5 1834
6 TraesCS7D01G133700 chr7B 34892822 34893432 610 True 351.000000 351 77.352000 4007 4628 1 chr7B.!!$R1 621
7 TraesCS7D01G133700 chr7A 85964028 85969587 5559 True 978.500000 2447 93.281000 1 6441 8 chr7A.!!$R3 6440
8 TraesCS7D01G133700 chr7A 86227606 86229264 1658 True 450.500000 568 81.388000 3834 5694 2 chr7A.!!$R4 1860

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
875 890 1.152860 ACCCGTCACAATGGTTGCA 60.153 52.632 0.00 0.0 0.00 4.08 F
1581 1602 0.386113 GGCGGATCTAGCGTTCTTCT 59.614 55.000 7.43 0.0 35.00 2.85 F
1835 1857 0.391263 CGACCCCTAAAGCACCTGAC 60.391 60.000 0.00 0.0 0.00 3.51 F
2048 2071 1.065926 GGTAAACCCACCCCTCTAACG 60.066 57.143 0.00 0.0 31.91 3.18 F
2899 2935 1.377725 CCTGGCCGATGCTGAACTT 60.378 57.895 0.00 0.0 37.74 2.66 F
3640 3785 2.033194 GGAGGGACGTTTTGGCTCG 61.033 63.158 0.00 0.0 0.00 5.03 F
4940 5450 0.110056 GTGTTGAGCGCTCACCATTG 60.110 55.000 35.40 0.0 39.66 2.82 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2832 2868 0.036010 ATGAAGTGGACTCTTGGGCG 60.036 55.000 0.00 0.0 0.00 6.13 R
2899 2935 3.269906 AGAAGGAGTAGGAAGAGCTACCA 59.730 47.826 6.80 0.0 0.00 3.25 R
3714 4097 0.250295 TCCACTCTGCTTTGAACCCG 60.250 55.000 0.00 0.0 0.00 5.28 R
3726 4111 1.955080 GATCCGGTCGTTATCCACTCT 59.045 52.381 0.00 0.0 0.00 3.24 R
4702 5212 0.041663 AACATGCGTTGCACGTACAC 60.042 50.000 9.76 0.0 44.73 2.90 R
4974 5484 0.032217 ATCCAACAAATCCCGGCCAT 60.032 50.000 2.24 0.0 0.00 4.40 R
6124 6934 2.111878 GATGCCGTCCCCATCCTG 59.888 66.667 0.00 0.0 34.43 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 9.591220 ATTATCTTATACTCCCCTCCTAGTCTA 57.409 37.037 0.00 0.00 0.00 2.59
34 35 3.385314 ACTCCCCTCCTAGTCTACAAC 57.615 52.381 0.00 0.00 0.00 3.32
130 131 1.270907 CAAGCTGGACCAGACTACCT 58.729 55.000 26.25 9.20 32.44 3.08
131 132 2.457598 CAAGCTGGACCAGACTACCTA 58.542 52.381 26.25 0.00 32.44 3.08
187 188 3.206150 CACCTTACTGCCATGTCATACC 58.794 50.000 0.00 0.00 0.00 2.73
214 228 2.805671 CTCAACAATGTAGCCGACACAA 59.194 45.455 0.00 0.00 42.17 3.33
735 749 1.545651 CCACAAACCTCCTGTTCTCCC 60.546 57.143 0.00 0.00 35.67 4.30
875 890 1.152860 ACCCGTCACAATGGTTGCA 60.153 52.632 0.00 0.00 0.00 4.08
961 979 2.009108 CGCATGGTGGATCAACTCG 58.991 57.895 0.00 0.00 0.00 4.18
1172 1190 6.606395 GGAGGTAGTGAAGAGTAAGGTCATTA 59.394 42.308 0.00 0.00 0.00 1.90
1281 1301 5.785423 TCTTTATTTCACTCTCTCCCCTTCA 59.215 40.000 0.00 0.00 0.00 3.02
1401 1422 5.452341 AATAATCTTTCCCCGGTTCTTCT 57.548 39.130 0.00 0.00 0.00 2.85
1457 1478 1.291132 GGCTCATCGTTCTGTTAGGC 58.709 55.000 0.00 0.00 0.00 3.93
1463 1484 0.530744 TCGTTCTGTTAGGCAGCGAT 59.469 50.000 0.00 0.00 44.66 4.58
1581 1602 0.386113 GGCGGATCTAGCGTTCTTCT 59.614 55.000 7.43 0.00 35.00 2.85
1594 1615 9.067986 TCTAGCGTTCTTCTAGAATATCATTGA 57.932 33.333 5.44 0.00 39.46 2.57
1629 1650 1.699634 AGAGCTAAGCCCAAGTCAACA 59.300 47.619 0.00 0.00 0.00 3.33
1637 1658 1.612199 GCCCAAGTCAACACGGGATTA 60.612 52.381 10.25 0.00 41.62 1.75
1689 1711 2.478894 ACGTGTGTATTCTTCGCCTTTG 59.521 45.455 0.00 0.00 0.00 2.77
1761 1783 3.683802 CTTCTCTTCCAATGAGCACCTT 58.316 45.455 0.00 0.00 0.00 3.50
1835 1857 0.391263 CGACCCCTAAAGCACCTGAC 60.391 60.000 0.00 0.00 0.00 3.51
1869 1891 1.660019 TTGTGGGGGCTTTCCTGGAA 61.660 55.000 4.68 4.68 35.33 3.53
1996 2018 8.525290 AAATTCTGATCATTCCGAACCTAAAT 57.475 30.769 0.00 0.00 29.36 1.40
2048 2071 1.065926 GGTAAACCCACCCCTCTAACG 60.066 57.143 0.00 0.00 31.91 3.18
2346 2372 5.945310 TGAATGAGAATCCAAAGATAGGGG 58.055 41.667 0.00 0.00 30.42 4.79
2419 2450 2.040813 ACTGATGTGCCATCTTTGGAGT 59.959 45.455 13.94 7.58 46.92 3.85
2473 2504 4.299586 TCATTTGTAGTTCTGCCATGGA 57.700 40.909 18.40 0.00 0.00 3.41
2477 2508 4.574674 TTGTAGTTCTGCCATGGATTCT 57.425 40.909 18.40 8.14 0.00 2.40
2721 2753 5.618561 CATCGAGTTACCAGTAAAACAAGC 58.381 41.667 0.00 0.00 0.00 4.01
2745 2778 3.947834 AGGGTTTCTTCTGTTTGTGTCAG 59.052 43.478 0.00 0.00 0.00 3.51
2746 2779 3.694566 GGGTTTCTTCTGTTTGTGTCAGT 59.305 43.478 0.00 0.00 34.86 3.41
2898 2934 2.270205 CCTGGCCGATGCTGAACT 59.730 61.111 0.00 0.00 37.74 3.01
2899 2935 1.377725 CCTGGCCGATGCTGAACTT 60.378 57.895 0.00 0.00 37.74 2.66
3215 3358 6.817765 TTAGAATGTCCAATTGAAGTGGTC 57.182 37.500 11.74 6.76 37.43 4.02
3314 3459 6.145338 ACCTCTACTTAACGATATGTGTGG 57.855 41.667 0.00 0.00 0.00 4.17
3327 3472 7.143340 ACGATATGTGTGGTGTACATATGTAC 58.857 38.462 30.81 30.81 46.34 2.90
3353 3498 9.229784 CATTGAAATGACTTGCACTTGATATAC 57.770 33.333 0.00 0.00 38.70 1.47
3354 3499 8.565896 TTGAAATGACTTGCACTTGATATACT 57.434 30.769 0.00 0.00 0.00 2.12
3355 3500 8.201554 TGAAATGACTTGCACTTGATATACTC 57.798 34.615 0.00 0.00 0.00 2.59
3356 3501 8.043113 TGAAATGACTTGCACTTGATATACTCT 58.957 33.333 0.00 0.00 0.00 3.24
3357 3502 8.430801 AAATGACTTGCACTTGATATACTCTC 57.569 34.615 0.00 0.00 0.00 3.20
3358 3503 6.782082 TGACTTGCACTTGATATACTCTCT 57.218 37.500 0.00 0.00 0.00 3.10
3359 3504 7.175347 TGACTTGCACTTGATATACTCTCTT 57.825 36.000 0.00 0.00 0.00 2.85
3360 3505 7.261325 TGACTTGCACTTGATATACTCTCTTC 58.739 38.462 0.00 0.00 0.00 2.87
3361 3506 6.269315 ACTTGCACTTGATATACTCTCTTCG 58.731 40.000 0.00 0.00 0.00 3.79
3362 3507 5.836821 TGCACTTGATATACTCTCTTCGT 57.163 39.130 0.00 0.00 0.00 3.85
3363 3508 6.208988 TGCACTTGATATACTCTCTTCGTT 57.791 37.500 0.00 0.00 0.00 3.85
3364 3509 6.631016 TGCACTTGATATACTCTCTTCGTTT 58.369 36.000 0.00 0.00 0.00 3.60
3365 3510 6.752351 TGCACTTGATATACTCTCTTCGTTTC 59.248 38.462 0.00 0.00 0.00 2.78
3366 3511 6.975772 GCACTTGATATACTCTCTTCGTTTCT 59.024 38.462 0.00 0.00 0.00 2.52
3367 3512 7.489757 GCACTTGATATACTCTCTTCGTTTCTT 59.510 37.037 0.00 0.00 0.00 2.52
3368 3513 9.360093 CACTTGATATACTCTCTTCGTTTCTTT 57.640 33.333 0.00 0.00 0.00 2.52
3369 3514 9.575783 ACTTGATATACTCTCTTCGTTTCTTTC 57.424 33.333 0.00 0.00 0.00 2.62
3370 3515 9.796120 CTTGATATACTCTCTTCGTTTCTTTCT 57.204 33.333 0.00 0.00 0.00 2.52
3375 3520 6.887626 ACTCTCTTCGTTTCTTTCTACTCT 57.112 37.500 0.00 0.00 0.00 3.24
3376 3521 6.674066 ACTCTCTTCGTTTCTTTCTACTCTG 58.326 40.000 0.00 0.00 0.00 3.35
3377 3522 5.462405 TCTCTTCGTTTCTTTCTACTCTGC 58.538 41.667 0.00 0.00 0.00 4.26
3378 3523 5.009710 TCTCTTCGTTTCTTTCTACTCTGCA 59.990 40.000 0.00 0.00 0.00 4.41
3379 3524 5.784177 TCTTCGTTTCTTTCTACTCTGCAT 58.216 37.500 0.00 0.00 0.00 3.96
3380 3525 6.920817 TCTTCGTTTCTTTCTACTCTGCATA 58.079 36.000 0.00 0.00 0.00 3.14
3381 3526 7.548097 TCTTCGTTTCTTTCTACTCTGCATAT 58.452 34.615 0.00 0.00 0.00 1.78
3382 3527 8.683615 TCTTCGTTTCTTTCTACTCTGCATATA 58.316 33.333 0.00 0.00 0.00 0.86
3383 3528 9.302345 CTTCGTTTCTTTCTACTCTGCATATAA 57.698 33.333 0.00 0.00 0.00 0.98
3384 3529 8.858003 TCGTTTCTTTCTACTCTGCATATAAG 57.142 34.615 0.00 0.00 0.00 1.73
3385 3530 8.683615 TCGTTTCTTTCTACTCTGCATATAAGA 58.316 33.333 0.00 0.00 0.00 2.10
3386 3531 9.469807 CGTTTCTTTCTACTCTGCATATAAGAT 57.530 33.333 0.00 0.00 0.00 2.40
3390 3535 9.770097 TCTTTCTACTCTGCATATAAGATTTGG 57.230 33.333 0.00 0.00 0.00 3.28
3391 3536 9.553064 CTTTCTACTCTGCATATAAGATTTGGT 57.447 33.333 0.00 0.00 0.00 3.67
3392 3537 9.547753 TTTCTACTCTGCATATAAGATTTGGTC 57.452 33.333 0.00 0.00 0.00 4.02
3393 3538 8.250143 TCTACTCTGCATATAAGATTTGGTCA 57.750 34.615 0.00 0.00 0.00 4.02
3394 3539 8.704668 TCTACTCTGCATATAAGATTTGGTCAA 58.295 33.333 0.00 0.00 0.00 3.18
3395 3540 9.330063 CTACTCTGCATATAAGATTTGGTCAAA 57.670 33.333 0.00 0.00 34.46 2.69
3396 3541 8.218338 ACTCTGCATATAAGATTTGGTCAAAG 57.782 34.615 2.55 0.00 33.32 2.77
3397 3542 7.831193 ACTCTGCATATAAGATTTGGTCAAAGT 59.169 33.333 2.55 0.00 33.32 2.66
3398 3543 8.213518 TCTGCATATAAGATTTGGTCAAAGTC 57.786 34.615 2.55 1.51 33.32 3.01
3399 3544 7.828717 TCTGCATATAAGATTTGGTCAAAGTCA 59.171 33.333 2.55 0.00 33.32 3.41
3400 3545 8.347004 TGCATATAAGATTTGGTCAAAGTCAA 57.653 30.769 2.55 0.00 33.32 3.18
3401 3546 8.801299 TGCATATAAGATTTGGTCAAAGTCAAA 58.199 29.630 2.55 0.00 37.29 2.69
3402 3547 9.076596 GCATATAAGATTTGGTCAAAGTCAAAC 57.923 33.333 2.55 0.00 35.97 2.93
3408 3553 8.519799 AGATTTGGTCAAAGTCAAACTTTAGA 57.480 30.769 4.86 3.55 45.84 2.10
3409 3554 8.966868 AGATTTGGTCAAAGTCAAACTTTAGAA 58.033 29.630 4.86 0.00 45.84 2.10
3410 3555 9.581099 GATTTGGTCAAAGTCAAACTTTAGAAA 57.419 29.630 4.86 3.49 45.84 2.52
3411 3556 8.980143 TTTGGTCAAAGTCAAACTTTAGAAAG 57.020 30.769 4.86 0.37 45.84 2.62
3412 3557 7.696992 TGGTCAAAGTCAAACTTTAGAAAGT 57.303 32.000 4.86 1.72 45.84 2.66
3585 3730 9.076596 GTTTGACTTTGACCAAATCTTATATGC 57.923 33.333 0.00 0.00 35.14 3.14
3586 3731 7.936496 TGACTTTGACCAAATCTTATATGCA 57.064 32.000 0.00 0.00 0.00 3.96
3587 3732 8.347004 TGACTTTGACCAAATCTTATATGCAA 57.653 30.769 0.00 0.00 0.00 4.08
3588 3733 8.801299 TGACTTTGACCAAATCTTATATGCAAA 58.199 29.630 0.00 0.00 0.00 3.68
3589 3734 8.986477 ACTTTGACCAAATCTTATATGCAAAC 57.014 30.769 0.00 0.00 0.00 2.93
3590 3735 8.806146 ACTTTGACCAAATCTTATATGCAAACT 58.194 29.630 0.00 0.00 0.00 2.66
3640 3785 2.033194 GGAGGGACGTTTTGGCTCG 61.033 63.158 0.00 0.00 0.00 5.03
3718 4101 8.826293 TCCTTTACCATATTTATTTTTCGGGT 57.174 30.769 0.00 0.00 0.00 5.28
3720 4103 9.524106 CCTTTACCATATTTATTTTTCGGGTTC 57.476 33.333 0.00 0.00 0.00 3.62
3726 4111 7.547370 CCATATTTATTTTTCGGGTTCAAAGCA 59.453 33.333 0.00 0.00 0.00 3.91
3806 4191 4.759693 CGGGATAGCAATGCTTATTTGGTA 59.240 41.667 14.85 0.00 40.44 3.25
3856 4242 9.430838 CTCTTTCTTGATTTATTATTCAGCACG 57.569 33.333 0.00 0.00 0.00 5.34
3930 4319 2.777692 TGGTGTTGTCCCTCTCTTTTCT 59.222 45.455 0.00 0.00 0.00 2.52
4151 4547 4.436183 GCTTCTCCGCTTGAAACAGTTATC 60.436 45.833 0.00 0.00 0.00 1.75
4198 4599 8.758633 TTAGCTTGAATCTGTACACTAGAAAC 57.241 34.615 0.00 0.00 0.00 2.78
4284 4687 6.374565 AAGCAAAATGAGATGTGAGATAGC 57.625 37.500 0.00 0.00 0.00 2.97
4286 4689 5.884232 AGCAAAATGAGATGTGAGATAGCAA 59.116 36.000 0.00 0.00 0.00 3.91
4319 4728 8.793592 AGATTGTCTAATTGTTTCCTTTACCAC 58.206 33.333 0.00 0.00 0.00 4.16
4335 4744 3.577649 ACCACCATAGAGAATATCGCG 57.422 47.619 0.00 0.00 0.00 5.87
4657 5167 8.094284 TCTTGCTCCATATATACCAATAGCAT 57.906 34.615 0.00 0.00 38.41 3.79
4693 5203 7.824779 AGACCAACTAAGATCTTTGTTCCATAC 59.175 37.037 25.91 17.07 36.64 2.39
4694 5204 7.690256 ACCAACTAAGATCTTTGTTCCATACT 58.310 34.615 25.91 7.19 36.64 2.12
4695 5205 8.822805 ACCAACTAAGATCTTTGTTCCATACTA 58.177 33.333 25.91 0.00 36.64 1.82
4696 5206 9.319143 CCAACTAAGATCTTTGTTCCATACTAG 57.681 37.037 25.91 15.18 36.64 2.57
4697 5207 9.877178 CAACTAAGATCTTTGTTCCATACTAGT 57.123 33.333 25.91 11.56 36.64 2.57
4705 5215 9.959721 ATCTTTGTTCCATACTAGTAAATGTGT 57.040 29.630 6.70 0.00 0.00 3.72
4708 5218 8.692110 TTGTTCCATACTAGTAAATGTGTACG 57.308 34.615 6.70 0.00 0.00 3.67
4709 5219 7.829725 TGTTCCATACTAGTAAATGTGTACGT 58.170 34.615 6.70 0.00 0.00 3.57
4710 5220 7.756272 TGTTCCATACTAGTAAATGTGTACGTG 59.244 37.037 6.70 0.00 0.00 4.49
4711 5221 6.267817 TCCATACTAGTAAATGTGTACGTGC 58.732 40.000 6.70 0.00 0.00 5.34
4712 5222 6.037726 CCATACTAGTAAATGTGTACGTGCA 58.962 40.000 6.70 0.82 0.00 4.57
4713 5223 6.532302 CCATACTAGTAAATGTGTACGTGCAA 59.468 38.462 8.25 0.00 0.00 4.08
4714 5224 5.834239 ACTAGTAAATGTGTACGTGCAAC 57.166 39.130 8.25 2.31 0.00 4.17
4782 5292 8.307582 AGGTAGGATATTATTTACTCCATCCG 57.692 38.462 0.00 0.00 37.58 4.18
4783 5293 7.899709 AGGTAGGATATTATTTACTCCATCCGT 59.100 37.037 0.00 0.00 37.58 4.69
4784 5294 8.537858 GGTAGGATATTATTTACTCCATCCGTT 58.462 37.037 0.00 0.00 37.58 4.44
4785 5295 9.583765 GTAGGATATTATTTACTCCATCCGTTC 57.416 37.037 0.00 0.00 37.58 3.95
4786 5296 7.621796 AGGATATTATTTACTCCATCCGTTCC 58.378 38.462 0.00 0.00 37.58 3.62
4787 5297 7.236847 AGGATATTATTTACTCCATCCGTTCCA 59.763 37.037 0.00 0.00 37.58 3.53
4788 5298 7.881232 GGATATTATTTACTCCATCCGTTCCAA 59.119 37.037 0.00 0.00 0.00 3.53
4789 5299 9.280174 GATATTATTTACTCCATCCGTTCCAAA 57.720 33.333 0.00 0.00 0.00 3.28
4790 5300 7.948034 ATTATTTACTCCATCCGTTCCAAAA 57.052 32.000 0.00 0.00 0.00 2.44
4791 5301 7.948034 TTATTTACTCCATCCGTTCCAAAAT 57.052 32.000 0.00 0.00 0.00 1.82
4792 5302 9.635404 ATTATTTACTCCATCCGTTCCAAAATA 57.365 29.630 0.00 0.00 0.00 1.40
4793 5303 6.995511 TTTACTCCATCCGTTCCAAAATAG 57.004 37.500 0.00 0.00 0.00 1.73
4794 5304 4.837093 ACTCCATCCGTTCCAAAATAGA 57.163 40.909 0.00 0.00 0.00 1.98
4795 5305 5.373812 ACTCCATCCGTTCCAAAATAGAT 57.626 39.130 0.00 0.00 0.00 1.98
4796 5306 5.126067 ACTCCATCCGTTCCAAAATAGATG 58.874 41.667 0.00 0.00 31.49 2.90
4797 5307 5.104527 ACTCCATCCGTTCCAAAATAGATGA 60.105 40.000 0.00 0.00 32.55 2.92
4798 5308 5.123227 TCCATCCGTTCCAAAATAGATGAC 58.877 41.667 0.00 0.00 32.55 3.06
4799 5309 5.104527 TCCATCCGTTCCAAAATAGATGACT 60.105 40.000 0.00 0.00 32.55 3.41
4800 5310 5.237344 CCATCCGTTCCAAAATAGATGACTC 59.763 44.000 0.00 0.00 32.55 3.36
4801 5311 5.414789 TCCGTTCCAAAATAGATGACTCA 57.585 39.130 0.00 0.00 0.00 3.41
4802 5312 5.800296 TCCGTTCCAAAATAGATGACTCAA 58.200 37.500 0.00 0.00 0.00 3.02
4803 5313 5.642063 TCCGTTCCAAAATAGATGACTCAAC 59.358 40.000 0.00 0.00 0.00 3.18
4804 5314 5.643777 CCGTTCCAAAATAGATGACTCAACT 59.356 40.000 0.00 0.00 0.00 3.16
4805 5315 6.149474 CCGTTCCAAAATAGATGACTCAACTT 59.851 38.462 0.00 0.00 0.00 2.66
4806 5316 7.308589 CCGTTCCAAAATAGATGACTCAACTTT 60.309 37.037 0.00 0.00 0.00 2.66
4807 5317 7.535258 CGTTCCAAAATAGATGACTCAACTTTG 59.465 37.037 0.00 0.00 0.00 2.77
4808 5318 8.352942 GTTCCAAAATAGATGACTCAACTTTGT 58.647 33.333 0.00 0.00 0.00 2.83
4809 5319 9.567776 TTCCAAAATAGATGACTCAACTTTGTA 57.432 29.630 0.00 0.00 0.00 2.41
4810 5320 8.999431 TCCAAAATAGATGACTCAACTTTGTAC 58.001 33.333 0.00 0.00 0.00 2.90
4811 5321 9.003658 CCAAAATAGATGACTCAACTTTGTACT 57.996 33.333 0.00 0.00 0.00 2.73
4844 5354 9.003658 AGTACAAAGTTGAGTCATCTATTTTGG 57.996 33.333 14.35 0.00 40.00 3.28
4845 5355 8.999431 GTACAAAGTTGAGTCATCTATTTTGGA 58.001 33.333 14.35 6.88 40.00 3.53
4846 5356 8.463930 ACAAAGTTGAGTCATCTATTTTGGAA 57.536 30.769 14.35 0.00 40.00 3.53
4847 5357 8.352942 ACAAAGTTGAGTCATCTATTTTGGAAC 58.647 33.333 14.35 0.00 40.00 3.62
4848 5358 6.727824 AGTTGAGTCATCTATTTTGGAACG 57.272 37.500 1.70 0.00 0.00 3.95
4849 5359 5.643777 AGTTGAGTCATCTATTTTGGAACGG 59.356 40.000 1.70 0.00 0.00 4.44
4850 5360 5.414789 TGAGTCATCTATTTTGGAACGGA 57.585 39.130 0.00 0.00 0.00 4.69
4851 5361 5.419542 TGAGTCATCTATTTTGGAACGGAG 58.580 41.667 0.00 0.00 0.00 4.63
4852 5362 4.770795 AGTCATCTATTTTGGAACGGAGG 58.229 43.478 0.00 0.00 0.00 4.30
4853 5363 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
4854 5364 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
4855 5365 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
4856 5366 3.178865 TCTATTTTGGAACGGAGGGAGT 58.821 45.455 0.00 0.00 0.00 3.85
4857 5367 4.355549 TCTATTTTGGAACGGAGGGAGTA 58.644 43.478 0.00 0.00 0.00 2.59
4858 5368 2.845363 TTTTGGAACGGAGGGAGTAC 57.155 50.000 0.00 0.00 0.00 2.73
4859 5369 0.604578 TTTGGAACGGAGGGAGTACG 59.395 55.000 0.00 0.00 0.00 3.67
4860 5370 0.540365 TTGGAACGGAGGGAGTACGT 60.540 55.000 0.00 0.00 43.43 3.57
4861 5371 0.327924 TGGAACGGAGGGAGTACGTA 59.672 55.000 0.00 0.00 40.31 3.57
4862 5372 1.064463 TGGAACGGAGGGAGTACGTAT 60.064 52.381 0.00 0.00 40.31 3.06
4863 5373 2.027385 GGAACGGAGGGAGTACGTATT 58.973 52.381 0.00 0.00 40.31 1.89
4864 5374 3.214328 GGAACGGAGGGAGTACGTATTA 58.786 50.000 0.00 0.00 40.31 0.98
4865 5375 3.632145 GGAACGGAGGGAGTACGTATTAA 59.368 47.826 0.00 0.00 40.31 1.40
4866 5376 4.279420 GGAACGGAGGGAGTACGTATTAAT 59.721 45.833 0.00 0.00 40.31 1.40
4867 5377 5.221322 GGAACGGAGGGAGTACGTATTAATT 60.221 44.000 0.00 0.00 40.31 1.40
4868 5378 6.016276 GGAACGGAGGGAGTACGTATTAATTA 60.016 42.308 0.00 0.00 40.31 1.40
4869 5379 7.309438 GGAACGGAGGGAGTACGTATTAATTAT 60.309 40.741 0.00 0.00 40.31 1.28
4870 5380 6.917533 ACGGAGGGAGTACGTATTAATTATG 58.082 40.000 0.00 0.00 39.30 1.90
4871 5381 6.491403 ACGGAGGGAGTACGTATTAATTATGT 59.509 38.462 0.00 0.00 39.30 2.29
4872 5382 6.805271 CGGAGGGAGTACGTATTAATTATGTG 59.195 42.308 0.00 0.00 32.26 3.21
4873 5383 7.308770 CGGAGGGAGTACGTATTAATTATGTGA 60.309 40.741 0.00 0.00 32.26 3.58
4874 5384 8.529476 GGAGGGAGTACGTATTAATTATGTGAT 58.471 37.037 0.00 0.00 32.26 3.06
4875 5385 9.924650 GAGGGAGTACGTATTAATTATGTGATT 57.075 33.333 0.00 0.00 32.26 2.57
4916 5426 8.752005 ATTTGGTATGATATAAACTGCACACT 57.248 30.769 0.00 0.00 0.00 3.55
4917 5427 9.845740 ATTTGGTATGATATAAACTGCACACTA 57.154 29.630 0.00 0.00 0.00 2.74
4918 5428 9.674068 TTTGGTATGATATAAACTGCACACTAA 57.326 29.630 0.00 0.00 0.00 2.24
4919 5429 9.674068 TTGGTATGATATAAACTGCACACTAAA 57.326 29.630 0.00 0.00 0.00 1.85
4920 5430 9.104965 TGGTATGATATAAACTGCACACTAAAC 57.895 33.333 0.00 0.00 0.00 2.01
4921 5431 8.273557 GGTATGATATAAACTGCACACTAAACG 58.726 37.037 0.00 0.00 0.00 3.60
4922 5432 7.843490 ATGATATAAACTGCACACTAAACGT 57.157 32.000 0.00 0.00 0.00 3.99
4931 5441 3.345087 CACTAAACGTGTTGAGCGC 57.655 52.632 0.00 0.00 38.84 5.92
4932 5442 0.859232 CACTAAACGTGTTGAGCGCT 59.141 50.000 11.27 11.27 38.84 5.92
4933 5443 1.136611 CACTAAACGTGTTGAGCGCTC 60.137 52.381 30.42 30.42 38.84 5.03
4934 5444 1.136690 CTAAACGTGTTGAGCGCTCA 58.863 50.000 35.30 35.30 37.91 4.26
4935 5445 0.856641 TAAACGTGTTGAGCGCTCAC 59.143 50.000 38.36 29.97 39.66 3.51
4936 5446 1.772063 AAACGTGTTGAGCGCTCACC 61.772 55.000 38.36 32.16 39.66 4.02
4937 5447 2.661537 CGTGTTGAGCGCTCACCA 60.662 61.111 38.36 34.47 39.66 4.17
4938 5448 2.029288 CGTGTTGAGCGCTCACCAT 61.029 57.895 35.40 1.89 39.66 3.55
4939 5449 1.568612 CGTGTTGAGCGCTCACCATT 61.569 55.000 35.40 1.02 39.66 3.16
4940 5450 0.110056 GTGTTGAGCGCTCACCATTG 60.110 55.000 35.40 0.00 39.66 2.82
4941 5451 1.236616 TGTTGAGCGCTCACCATTGG 61.237 55.000 38.36 0.00 39.66 3.16
4942 5452 0.955428 GTTGAGCGCTCACCATTGGA 60.955 55.000 38.36 20.24 39.66 3.53
4943 5453 0.674581 TTGAGCGCTCACCATTGGAG 60.675 55.000 38.36 0.83 39.66 3.86
4948 5458 3.915575 CTCACCATTGGAGCAGCC 58.084 61.111 10.37 0.00 37.10 4.85
4949 5459 1.302285 CTCACCATTGGAGCAGCCT 59.698 57.895 10.37 0.00 37.63 4.58
4950 5460 1.001764 TCACCATTGGAGCAGCCTG 60.002 57.895 10.37 0.00 37.63 4.85
4951 5461 1.001764 CACCATTGGAGCAGCCTGA 60.002 57.895 10.37 0.00 37.63 3.86
4952 5462 1.030488 CACCATTGGAGCAGCCTGAG 61.030 60.000 10.37 0.00 37.63 3.35
4953 5463 1.302285 CCATTGGAGCAGCCTGAGT 59.698 57.895 0.00 0.00 37.63 3.41
4954 5464 0.747283 CCATTGGAGCAGCCTGAGTC 60.747 60.000 0.00 0.00 37.63 3.36
4955 5465 1.088340 CATTGGAGCAGCCTGAGTCG 61.088 60.000 0.00 0.00 37.63 4.18
4956 5466 1.548357 ATTGGAGCAGCCTGAGTCGT 61.548 55.000 0.00 0.00 37.63 4.34
4957 5467 1.758440 TTGGAGCAGCCTGAGTCGTT 61.758 55.000 0.00 0.00 37.63 3.85
4958 5468 1.739562 GGAGCAGCCTGAGTCGTTG 60.740 63.158 0.00 0.00 0.00 4.10
4959 5469 1.739562 GAGCAGCCTGAGTCGTTGG 60.740 63.158 0.00 0.00 0.00 3.77
4960 5470 2.159819 GAGCAGCCTGAGTCGTTGGA 62.160 60.000 0.00 0.00 0.00 3.53
4961 5471 1.078848 GCAGCCTGAGTCGTTGGAT 60.079 57.895 0.00 0.00 0.00 3.41
4962 5472 0.674895 GCAGCCTGAGTCGTTGGATT 60.675 55.000 0.00 0.00 0.00 3.01
4963 5473 1.081892 CAGCCTGAGTCGTTGGATTG 58.918 55.000 0.00 0.00 0.00 2.67
4964 5474 0.976641 AGCCTGAGTCGTTGGATTGA 59.023 50.000 1.44 0.00 0.00 2.57
4965 5475 1.079503 GCCTGAGTCGTTGGATTGAC 58.920 55.000 1.44 0.00 35.33 3.18
4966 5476 1.726853 CCTGAGTCGTTGGATTGACC 58.273 55.000 0.00 0.00 35.71 4.02
4967 5477 1.276421 CCTGAGTCGTTGGATTGACCT 59.724 52.381 0.00 0.00 39.86 3.85
4968 5478 2.341257 CTGAGTCGTTGGATTGACCTG 58.659 52.381 0.00 0.00 39.86 4.00
4969 5479 1.967779 TGAGTCGTTGGATTGACCTGA 59.032 47.619 0.00 0.00 39.86 3.86
4970 5480 2.567169 TGAGTCGTTGGATTGACCTGAT 59.433 45.455 0.00 0.00 39.86 2.90
4971 5481 3.007940 TGAGTCGTTGGATTGACCTGATT 59.992 43.478 0.00 0.00 39.86 2.57
4972 5482 4.003648 GAGTCGTTGGATTGACCTGATTT 58.996 43.478 0.00 0.00 39.86 2.17
4973 5483 3.753272 AGTCGTTGGATTGACCTGATTTG 59.247 43.478 0.00 0.00 39.86 2.32
4974 5484 3.751175 GTCGTTGGATTGACCTGATTTGA 59.249 43.478 0.00 0.00 39.86 2.69
4975 5485 4.396166 GTCGTTGGATTGACCTGATTTGAT 59.604 41.667 0.00 0.00 39.86 2.57
4976 5486 4.395854 TCGTTGGATTGACCTGATTTGATG 59.604 41.667 0.00 0.00 39.86 3.07
4977 5487 4.439153 CGTTGGATTGACCTGATTTGATGG 60.439 45.833 0.00 0.00 39.86 3.51
4978 5488 3.025978 TGGATTGACCTGATTTGATGGC 58.974 45.455 0.00 0.00 39.86 4.40
4979 5489 2.363359 GGATTGACCTGATTTGATGGCC 59.637 50.000 0.00 0.00 35.41 5.36
4980 5490 1.462616 TTGACCTGATTTGATGGCCG 58.537 50.000 0.00 0.00 0.00 6.13
4981 5491 0.394216 TGACCTGATTTGATGGCCGG 60.394 55.000 0.00 0.00 0.00 6.13
4982 5492 1.076777 ACCTGATTTGATGGCCGGG 60.077 57.895 2.18 0.00 0.00 5.73
4983 5493 1.227102 CCTGATTTGATGGCCGGGA 59.773 57.895 2.18 0.00 0.00 5.14
4984 5494 0.178981 CCTGATTTGATGGCCGGGAT 60.179 55.000 2.18 0.00 0.00 3.85
4985 5495 1.696063 CTGATTTGATGGCCGGGATT 58.304 50.000 2.18 0.00 0.00 3.01
4986 5496 2.034124 CTGATTTGATGGCCGGGATTT 58.966 47.619 2.18 0.00 0.00 2.17
4987 5497 1.755959 TGATTTGATGGCCGGGATTTG 59.244 47.619 2.18 0.00 0.00 2.32
4988 5498 1.756538 GATTTGATGGCCGGGATTTGT 59.243 47.619 2.18 0.00 0.00 2.83
4989 5499 1.638529 TTTGATGGCCGGGATTTGTT 58.361 45.000 2.18 0.00 0.00 2.83
4990 5500 0.894141 TTGATGGCCGGGATTTGTTG 59.106 50.000 2.18 0.00 0.00 3.33
4991 5501 0.969917 TGATGGCCGGGATTTGTTGG 60.970 55.000 2.18 0.00 0.00 3.77
4992 5502 0.682855 GATGGCCGGGATTTGTTGGA 60.683 55.000 2.18 0.00 0.00 3.53
4993 5503 0.032217 ATGGCCGGGATTTGTTGGAT 60.032 50.000 2.18 0.00 0.00 3.41
4994 5504 0.682855 TGGCCGGGATTTGTTGGATC 60.683 55.000 2.18 0.00 0.00 3.36
4995 5505 0.395724 GGCCGGGATTTGTTGGATCT 60.396 55.000 2.18 0.00 0.00 2.75
4996 5506 0.740737 GCCGGGATTTGTTGGATCTG 59.259 55.000 2.18 0.00 0.00 2.90
4997 5507 0.740737 CCGGGATTTGTTGGATCTGC 59.259 55.000 0.00 0.00 0.00 4.26
4998 5508 0.740737 CGGGATTTGTTGGATCTGCC 59.259 55.000 0.00 0.00 37.10 4.85
4999 5509 1.114627 GGGATTTGTTGGATCTGCCC 58.885 55.000 0.00 0.00 34.97 5.36
5000 5510 1.114627 GGATTTGTTGGATCTGCCCC 58.885 55.000 0.00 0.00 34.97 5.80
5001 5511 1.342374 GGATTTGTTGGATCTGCCCCT 60.342 52.381 0.00 0.00 34.97 4.79
5002 5512 2.460669 GATTTGTTGGATCTGCCCCTT 58.539 47.619 0.00 0.00 34.97 3.95
5003 5513 2.397044 TTTGTTGGATCTGCCCCTTT 57.603 45.000 0.00 0.00 34.97 3.11
5004 5514 1.631405 TTGTTGGATCTGCCCCTTTG 58.369 50.000 0.00 0.00 34.97 2.77
5005 5515 0.251742 TGTTGGATCTGCCCCTTTGG 60.252 55.000 0.00 0.00 34.97 3.28
5020 5530 5.343307 CCCTTTGGGTCTTTTGATATTGG 57.657 43.478 0.00 0.00 38.25 3.16
5021 5531 4.777366 CCCTTTGGGTCTTTTGATATTGGT 59.223 41.667 0.00 0.00 38.25 3.67
5022 5532 5.955355 CCCTTTGGGTCTTTTGATATTGGTA 59.045 40.000 0.00 0.00 38.25 3.25
5023 5533 6.611236 CCCTTTGGGTCTTTTGATATTGGTAT 59.389 38.462 0.00 0.00 38.25 2.73
5024 5534 7.782644 CCCTTTGGGTCTTTTGATATTGGTATA 59.217 37.037 0.00 0.00 38.25 1.47
5025 5535 8.850156 CCTTTGGGTCTTTTGATATTGGTATAG 58.150 37.037 0.00 0.00 0.00 1.31
5115 5639 8.934825 TGCTTCCTACATTTTGAAATAAAATGC 58.065 29.630 19.40 8.73 46.23 3.56
5144 5670 9.299963 GCTGCAAATGATTTACATTGTATACAA 57.700 29.630 20.14 20.14 46.90 2.41
5179 5708 8.806429 TTAATACTCCTGCTGAAAATCATGAA 57.194 30.769 0.00 0.00 0.00 2.57
5231 5764 2.031683 GGGAAATAGCATCGTTTCACGG 59.968 50.000 0.00 0.00 42.81 4.94
5276 5813 4.390264 AGAACCTTGTGCTTTCTCCTAAC 58.610 43.478 0.00 0.00 0.00 2.34
5294 5831 5.067413 TCCTAACGGTTTGCATTTTGTTGTA 59.933 36.000 0.00 0.00 0.00 2.41
5331 5967 0.971386 ATTGGAAGGTTTGCAGCTGG 59.029 50.000 17.12 0.00 30.85 4.85
5346 5982 2.810852 CAGCTGGTGAAAAAGAGGAGAC 59.189 50.000 5.57 0.00 0.00 3.36
5447 6188 1.009829 CCCATCAAACTAGAGTGCGC 58.990 55.000 0.00 0.00 0.00 6.09
5471 6212 2.507484 CACATTCAACTCCAGCTTCCA 58.493 47.619 0.00 0.00 0.00 3.53
5473 6214 3.318839 CACATTCAACTCCAGCTTCCAAA 59.681 43.478 0.00 0.00 0.00 3.28
5508 6252 4.642437 AGCCAGCTTAAATTCCTAGCTTTC 59.358 41.667 0.00 2.95 42.30 2.62
5571 6336 6.592607 TCGTACTTGTTGAACTTTTCAGTCTT 59.407 34.615 0.00 0.00 41.38 3.01
5680 6450 3.463533 TGTTTCATTGTCGTATTGCGG 57.536 42.857 0.00 0.00 41.72 5.69
5683 6453 1.273688 TCATTGTCGTATTGCGGACG 58.726 50.000 0.00 0.00 41.72 4.79
5977 6778 4.848299 GCTATGAGAAAAACAAACTCAGCG 59.152 41.667 0.00 0.00 42.55 5.18
6105 6907 1.227089 CTGACGAATGGAGAGCGGG 60.227 63.158 0.00 0.00 0.00 6.13
6158 6968 3.385384 CGCTCCTCACCCTGCTGA 61.385 66.667 0.00 0.00 0.00 4.26
6160 6970 2.575993 CTCCTCACCCTGCTGACG 59.424 66.667 0.00 0.00 0.00 4.35
6161 6971 1.979155 CTCCTCACCCTGCTGACGA 60.979 63.158 0.00 0.00 0.00 4.20
6162 6972 1.305297 TCCTCACCCTGCTGACGAT 60.305 57.895 0.00 0.00 0.00 3.73
6163 6973 1.142748 CCTCACCCTGCTGACGATC 59.857 63.158 0.00 0.00 0.00 3.69
6165 6975 0.102120 CTCACCCTGCTGACGATCTC 59.898 60.000 0.00 0.00 0.00 2.75
6166 6976 0.323816 TCACCCTGCTGACGATCTCT 60.324 55.000 0.00 0.00 0.00 3.10
6178 6988 3.006430 TGACGATCTCTTGGTGTAAAGCA 59.994 43.478 0.00 0.00 0.00 3.91
6302 7112 2.985311 TGGCATACATACATGGGGATGA 59.015 45.455 9.83 0.00 0.00 2.92
6433 7243 2.150719 TCCCTTCCCGTTGCCTGAA 61.151 57.895 0.00 0.00 0.00 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 1.302949 CGATGATGGTGGGGGTTGT 59.697 57.895 0.00 0.00 0.00 3.32
34 35 2.374525 TGGACGATGATGGTGGGGG 61.375 63.158 0.00 0.00 0.00 5.40
187 188 3.185594 TCGGCTACATTGTTGAGAAAACG 59.814 43.478 2.29 0.00 0.00 3.60
214 228 7.227512 CACCTAGAATAAGGCGATGAAGAATTT 59.772 37.037 0.00 0.00 40.62 1.82
735 749 2.094700 TGTCGGAGTCGAGATTGAAAGG 60.095 50.000 0.00 0.00 46.91 3.11
875 890 2.807247 GGTTGTCCACCTTGTGCTT 58.193 52.632 0.00 0.00 43.29 3.91
1172 1190 3.503748 GCCTATTCCGCTTATGCTTCATT 59.496 43.478 0.00 0.00 36.97 2.57
1401 1422 3.295093 TCTTTGAAGTCACCATGGCAAA 58.705 40.909 13.04 11.80 0.00 3.68
1457 1478 7.393551 ACAAACTGAAAAACAAATATCGCTG 57.606 32.000 0.00 0.00 0.00 5.18
1463 1484 9.658799 TTCCATCAACAAACTGAAAAACAAATA 57.341 25.926 0.00 0.00 0.00 1.40
1526 1547 1.003118 TCGCTCCAAAGCCACTATTGT 59.997 47.619 0.00 0.00 46.34 2.71
1594 1615 6.321181 GGCTTAGCTCTGTCTATATATCAGCT 59.679 42.308 3.59 0.00 0.00 4.24
1612 1633 0.517316 CGTGTTGACTTGGGCTTAGC 59.483 55.000 0.00 0.00 0.00 3.09
1629 1650 3.443145 TTGGTTGTGGAATAATCCCGT 57.557 42.857 0.00 0.00 45.95 5.28
1689 1711 2.036475 TGCCATCGCTAGAGAGGATTTC 59.964 50.000 9.84 0.00 35.36 2.17
1761 1783 2.555006 CCACCAACCTCAATCACCATCA 60.555 50.000 0.00 0.00 0.00 3.07
1835 1857 7.337938 AGCCCCCACAAAATAGAAAAATAATG 58.662 34.615 0.00 0.00 0.00 1.90
1996 2018 5.276461 AGCCGACTTTATACATGACATGA 57.724 39.130 22.19 6.26 0.00 3.07
2048 2071 6.724263 TGGATTTACAATGCGTGAATGATAC 58.276 36.000 0.00 0.00 34.17 2.24
2276 2302 9.693739 TTCATTTATTACTTGCTATCTTTGGGA 57.306 29.630 0.00 0.00 0.00 4.37
2458 2489 5.415701 TCAAAAGAATCCATGGCAGAACTAC 59.584 40.000 6.96 0.00 0.00 2.73
2473 2504 8.802267 TCCTATTTCACGGATTTTCAAAAGAAT 58.198 29.630 0.00 0.00 0.00 2.40
2477 2508 8.172352 TCTTCCTATTTCACGGATTTTCAAAA 57.828 30.769 0.00 0.00 0.00 2.44
2618 2649 0.780637 TGGGTATTCTTTGGGGTGCA 59.219 50.000 0.00 0.00 0.00 4.57
2721 2753 2.943033 ACACAAACAGAAGAAACCCTCG 59.057 45.455 0.00 0.00 0.00 4.63
2745 2778 0.521291 AGCACAACACACACACACAC 59.479 50.000 0.00 0.00 0.00 3.82
2746 2779 0.801872 GAGCACAACACACACACACA 59.198 50.000 0.00 0.00 0.00 3.72
2831 2867 1.376037 GAAGTGGACTCTTGGGCGG 60.376 63.158 0.00 0.00 0.00 6.13
2832 2868 0.036010 ATGAAGTGGACTCTTGGGCG 60.036 55.000 0.00 0.00 0.00 6.13
2898 2934 3.759815 AGGAGTAGGAAGAGCTACCAA 57.240 47.619 6.80 0.00 0.00 3.67
2899 2935 3.269906 AGAAGGAGTAGGAAGAGCTACCA 59.730 47.826 6.80 0.00 0.00 3.25
3131 3271 3.779759 CACTGAATGTCTCTAGGAGCAC 58.220 50.000 0.00 0.00 0.00 4.40
3291 3436 5.655532 ACCACACATATCGTTAAGTAGAGGT 59.344 40.000 0.00 0.00 0.00 3.85
3327 3472 9.229784 GTATATCAAGTGCAAGTCATTTCAATG 57.770 33.333 0.00 0.00 37.75 2.82
3353 3498 5.571357 GCAGAGTAGAAAGAAACGAAGAGAG 59.429 44.000 0.00 0.00 0.00 3.20
3354 3499 5.009710 TGCAGAGTAGAAAGAAACGAAGAGA 59.990 40.000 0.00 0.00 0.00 3.10
3355 3500 5.223382 TGCAGAGTAGAAAGAAACGAAGAG 58.777 41.667 0.00 0.00 0.00 2.85
3356 3501 5.196341 TGCAGAGTAGAAAGAAACGAAGA 57.804 39.130 0.00 0.00 0.00 2.87
3357 3502 7.763172 ATATGCAGAGTAGAAAGAAACGAAG 57.237 36.000 0.00 0.00 0.00 3.79
3358 3503 9.302345 CTTATATGCAGAGTAGAAAGAAACGAA 57.698 33.333 0.00 0.00 0.00 3.85
3359 3504 8.683615 TCTTATATGCAGAGTAGAAAGAAACGA 58.316 33.333 0.00 0.00 0.00 3.85
3360 3505 8.858003 TCTTATATGCAGAGTAGAAAGAAACG 57.142 34.615 0.00 0.00 0.00 3.60
3364 3509 9.770097 CCAAATCTTATATGCAGAGTAGAAAGA 57.230 33.333 0.00 0.00 0.00 2.52
3365 3510 9.553064 ACCAAATCTTATATGCAGAGTAGAAAG 57.447 33.333 0.00 0.00 0.00 2.62
3366 3511 9.547753 GACCAAATCTTATATGCAGAGTAGAAA 57.452 33.333 0.00 0.00 0.00 2.52
3367 3512 8.704668 TGACCAAATCTTATATGCAGAGTAGAA 58.295 33.333 0.00 0.00 0.00 2.10
3368 3513 8.250143 TGACCAAATCTTATATGCAGAGTAGA 57.750 34.615 0.00 0.00 0.00 2.59
3369 3514 8.893219 TTGACCAAATCTTATATGCAGAGTAG 57.107 34.615 0.00 0.00 0.00 2.57
3370 3515 9.330063 CTTTGACCAAATCTTATATGCAGAGTA 57.670 33.333 0.00 0.00 0.00 2.59
3371 3516 7.831193 ACTTTGACCAAATCTTATATGCAGAGT 59.169 33.333 0.00 0.00 0.00 3.24
3372 3517 8.218338 ACTTTGACCAAATCTTATATGCAGAG 57.782 34.615 0.00 0.00 0.00 3.35
3373 3518 7.828717 TGACTTTGACCAAATCTTATATGCAGA 59.171 33.333 0.00 0.00 0.00 4.26
3374 3519 7.988737 TGACTTTGACCAAATCTTATATGCAG 58.011 34.615 0.00 0.00 0.00 4.41
3375 3520 7.936496 TGACTTTGACCAAATCTTATATGCA 57.064 32.000 0.00 0.00 0.00 3.96
3376 3521 9.076596 GTTTGACTTTGACCAAATCTTATATGC 57.923 33.333 0.00 0.00 35.14 3.14
3382 3527 8.966868 TCTAAAGTTTGACTTTGACCAAATCTT 58.033 29.630 14.50 0.70 46.83 2.40
3383 3528 8.519799 TCTAAAGTTTGACTTTGACCAAATCT 57.480 30.769 14.50 0.00 46.83 2.40
3384 3529 9.581099 TTTCTAAAGTTTGACTTTGACCAAATC 57.419 29.630 14.50 0.00 46.83 2.17
3385 3530 9.586435 CTTTCTAAAGTTTGACTTTGACCAAAT 57.414 29.630 14.50 0.00 46.83 2.32
3386 3531 8.581578 ACTTTCTAAAGTTTGACTTTGACCAAA 58.418 29.630 14.50 7.93 46.83 3.28
3387 3532 8.117813 ACTTTCTAAAGTTTGACTTTGACCAA 57.882 30.769 14.50 3.84 46.83 3.67
3388 3533 7.696992 ACTTTCTAAAGTTTGACTTTGACCA 57.303 32.000 14.50 0.00 46.83 4.02
3559 3704 9.076596 GCATATAAGATTTGGTCAAAGTCAAAC 57.923 33.333 2.55 0.00 35.97 2.93
3560 3705 8.801299 TGCATATAAGATTTGGTCAAAGTCAAA 58.199 29.630 2.55 0.00 37.29 2.69
3561 3706 8.347004 TGCATATAAGATTTGGTCAAAGTCAA 57.653 30.769 2.55 0.00 33.32 3.18
3562 3707 7.936496 TGCATATAAGATTTGGTCAAAGTCA 57.064 32.000 2.55 0.00 33.32 3.41
3563 3708 9.076596 GTTTGCATATAAGATTTGGTCAAAGTC 57.923 33.333 2.55 1.51 33.32 3.01
3564 3709 8.806146 AGTTTGCATATAAGATTTGGTCAAAGT 58.194 29.630 2.55 0.00 33.32 2.66
3621 3766 1.375326 GAGCCAAAACGTCCCTCCT 59.625 57.895 0.00 0.00 0.00 3.69
3640 3785 1.692411 GTTTACATCCCATCTGCCCC 58.308 55.000 0.00 0.00 0.00 5.80
3714 4097 0.250295 TCCACTCTGCTTTGAACCCG 60.250 55.000 0.00 0.00 0.00 5.28
3715 4098 2.206576 ATCCACTCTGCTTTGAACCC 57.793 50.000 0.00 0.00 0.00 4.11
3718 4101 3.994392 GTCGTTATCCACTCTGCTTTGAA 59.006 43.478 0.00 0.00 0.00 2.69
3720 4103 2.673368 GGTCGTTATCCACTCTGCTTTG 59.327 50.000 0.00 0.00 0.00 2.77
3721 4104 2.674177 CGGTCGTTATCCACTCTGCTTT 60.674 50.000 0.00 0.00 0.00 3.51
3726 4111 1.955080 GATCCGGTCGTTATCCACTCT 59.045 52.381 0.00 0.00 0.00 3.24
4017 4413 3.998913 TGCTACATCCTGAAACCATGA 57.001 42.857 0.00 0.00 0.00 3.07
4151 4547 7.702348 GCTAAAACAATAGAGCAAACCTTATGG 59.298 37.037 0.00 0.00 34.96 2.74
4272 4675 9.142515 CAATCTCTCTAATTGCTATCTCACATC 57.857 37.037 0.00 0.00 0.00 3.06
4319 4728 3.017442 TCCCTCGCGATATTCTCTATGG 58.983 50.000 10.36 2.52 0.00 2.74
4657 5167 8.302515 AGATCTTAGTTGGTCTTTCGGTAATA 57.697 34.615 0.00 0.00 0.00 0.98
4664 5174 7.228706 TGGAACAAAGATCTTAGTTGGTCTTTC 59.771 37.037 18.59 9.52 38.70 2.62
4693 5203 4.720110 GCGTTGCACGTACACATTTACTAG 60.720 45.833 9.76 0.00 44.73 2.57
4694 5204 3.121611 GCGTTGCACGTACACATTTACTA 59.878 43.478 9.76 0.00 44.73 1.82
4695 5205 2.096614 GCGTTGCACGTACACATTTACT 60.097 45.455 9.76 0.00 44.73 2.24
4696 5206 2.227556 GCGTTGCACGTACACATTTAC 58.772 47.619 9.76 0.00 44.73 2.01
4697 5207 1.865340 TGCGTTGCACGTACACATTTA 59.135 42.857 9.76 0.00 44.73 1.40
4698 5208 0.658368 TGCGTTGCACGTACACATTT 59.342 45.000 9.76 0.00 44.73 2.32
4699 5209 0.871722 ATGCGTTGCACGTACACATT 59.128 45.000 9.76 0.00 44.73 2.71
4700 5210 0.165727 CATGCGTTGCACGTACACAT 59.834 50.000 9.76 0.00 44.73 3.21
4701 5211 1.154814 ACATGCGTTGCACGTACACA 61.155 50.000 9.76 0.00 44.73 3.72
4702 5212 0.041663 AACATGCGTTGCACGTACAC 60.042 50.000 9.76 0.00 44.73 2.90
4703 5213 0.041751 CAACATGCGTTGCACGTACA 60.042 50.000 9.76 0.00 45.64 2.90
4704 5214 2.695087 CAACATGCGTTGCACGTAC 58.305 52.632 9.76 0.00 45.64 3.67
4710 5220 8.450964 ATATTACCTAATATCAACATGCGTTGC 58.549 33.333 0.00 0.00 39.74 4.17
4756 5266 9.417561 CGGATGGAGTAAATAATATCCTACCTA 57.582 37.037 0.00 0.00 33.58 3.08
4757 5267 7.899709 ACGGATGGAGTAAATAATATCCTACCT 59.100 37.037 0.00 0.00 33.58 3.08
4758 5268 8.075761 ACGGATGGAGTAAATAATATCCTACC 57.924 38.462 0.00 0.00 33.58 3.18
4759 5269 9.583765 GAACGGATGGAGTAAATAATATCCTAC 57.416 37.037 0.00 0.00 33.58 3.18
4760 5270 8.755977 GGAACGGATGGAGTAAATAATATCCTA 58.244 37.037 0.00 0.00 33.58 2.94
4761 5271 7.236847 TGGAACGGATGGAGTAAATAATATCCT 59.763 37.037 0.00 0.00 33.58 3.24
4762 5272 7.391620 TGGAACGGATGGAGTAAATAATATCC 58.608 38.462 0.00 0.00 0.00 2.59
4763 5273 8.842358 TTGGAACGGATGGAGTAAATAATATC 57.158 34.615 0.00 0.00 0.00 1.63
4764 5274 9.635404 TTTTGGAACGGATGGAGTAAATAATAT 57.365 29.630 0.00 0.00 0.00 1.28
4765 5275 9.635404 ATTTTGGAACGGATGGAGTAAATAATA 57.365 29.630 0.00 0.00 0.00 0.98
4766 5276 7.948034 TTTTGGAACGGATGGAGTAAATAAT 57.052 32.000 0.00 0.00 0.00 1.28
4767 5277 7.948034 ATTTTGGAACGGATGGAGTAAATAA 57.052 32.000 0.00 0.00 0.00 1.40
4768 5278 8.487848 TCTATTTTGGAACGGATGGAGTAAATA 58.512 33.333 0.00 0.00 0.00 1.40
4769 5279 7.343357 TCTATTTTGGAACGGATGGAGTAAAT 58.657 34.615 0.00 0.00 0.00 1.40
4770 5280 6.713276 TCTATTTTGGAACGGATGGAGTAAA 58.287 36.000 0.00 0.00 0.00 2.01
4771 5281 6.302535 TCTATTTTGGAACGGATGGAGTAA 57.697 37.500 0.00 0.00 0.00 2.24
4772 5282 5.943349 TCTATTTTGGAACGGATGGAGTA 57.057 39.130 0.00 0.00 0.00 2.59
4773 5283 4.837093 TCTATTTTGGAACGGATGGAGT 57.163 40.909 0.00 0.00 0.00 3.85
4774 5284 5.237344 GTCATCTATTTTGGAACGGATGGAG 59.763 44.000 0.00 0.00 32.58 3.86
4775 5285 5.104527 AGTCATCTATTTTGGAACGGATGGA 60.105 40.000 0.00 0.00 32.58 3.41
4776 5286 5.126067 AGTCATCTATTTTGGAACGGATGG 58.874 41.667 0.00 0.00 32.58 3.51
4777 5287 5.817296 TGAGTCATCTATTTTGGAACGGATG 59.183 40.000 0.00 0.00 32.78 3.51
4778 5288 5.989477 TGAGTCATCTATTTTGGAACGGAT 58.011 37.500 0.00 0.00 0.00 4.18
4779 5289 5.414789 TGAGTCATCTATTTTGGAACGGA 57.585 39.130 0.00 0.00 0.00 4.69
4780 5290 5.643777 AGTTGAGTCATCTATTTTGGAACGG 59.356 40.000 1.70 0.00 0.00 4.44
4781 5291 6.727824 AGTTGAGTCATCTATTTTGGAACG 57.272 37.500 1.70 0.00 0.00 3.95
4782 5292 8.352942 ACAAAGTTGAGTCATCTATTTTGGAAC 58.647 33.333 14.35 0.00 40.00 3.62
4783 5293 8.463930 ACAAAGTTGAGTCATCTATTTTGGAA 57.536 30.769 14.35 0.00 40.00 3.53
4784 5294 8.999431 GTACAAAGTTGAGTCATCTATTTTGGA 58.001 33.333 14.35 6.88 40.00 3.53
4785 5295 9.003658 AGTACAAAGTTGAGTCATCTATTTTGG 57.996 33.333 14.35 0.00 40.00 3.28
4818 5328 9.003658 CCAAAATAGATGACTCAACTTTGTACT 57.996 33.333 0.00 0.00 0.00 2.73
4819 5329 8.999431 TCCAAAATAGATGACTCAACTTTGTAC 58.001 33.333 0.00 0.00 0.00 2.90
4820 5330 9.567776 TTCCAAAATAGATGACTCAACTTTGTA 57.432 29.630 0.00 0.00 0.00 2.41
4821 5331 8.352942 GTTCCAAAATAGATGACTCAACTTTGT 58.647 33.333 0.00 0.00 0.00 2.83
4822 5332 7.535258 CGTTCCAAAATAGATGACTCAACTTTG 59.465 37.037 0.00 0.00 0.00 2.77
4823 5333 7.308589 CCGTTCCAAAATAGATGACTCAACTTT 60.309 37.037 0.00 0.00 0.00 2.66
4824 5334 6.149474 CCGTTCCAAAATAGATGACTCAACTT 59.851 38.462 0.00 0.00 0.00 2.66
4825 5335 5.643777 CCGTTCCAAAATAGATGACTCAACT 59.356 40.000 0.00 0.00 0.00 3.16
4826 5336 5.642063 TCCGTTCCAAAATAGATGACTCAAC 59.358 40.000 0.00 0.00 0.00 3.18
4827 5337 5.800296 TCCGTTCCAAAATAGATGACTCAA 58.200 37.500 0.00 0.00 0.00 3.02
4828 5338 5.414789 TCCGTTCCAAAATAGATGACTCA 57.585 39.130 0.00 0.00 0.00 3.41
4829 5339 4.811557 CCTCCGTTCCAAAATAGATGACTC 59.188 45.833 0.00 0.00 0.00 3.36
4830 5340 4.384208 CCCTCCGTTCCAAAATAGATGACT 60.384 45.833 0.00 0.00 0.00 3.41
4831 5341 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
4832 5342 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
4833 5343 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
4834 5344 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
4835 5345 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
4836 5346 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
4837 5347 3.119029 CGTACTCCCTCCGTTCCAAAATA 60.119 47.826 0.00 0.00 0.00 1.40
4838 5348 2.354403 CGTACTCCCTCCGTTCCAAAAT 60.354 50.000 0.00 0.00 0.00 1.82
4839 5349 1.001181 CGTACTCCCTCCGTTCCAAAA 59.999 52.381 0.00 0.00 0.00 2.44
4840 5350 0.604578 CGTACTCCCTCCGTTCCAAA 59.395 55.000 0.00 0.00 0.00 3.28
4841 5351 0.540365 ACGTACTCCCTCCGTTCCAA 60.540 55.000 0.00 0.00 0.00 3.53
4842 5352 0.327924 TACGTACTCCCTCCGTTCCA 59.672 55.000 0.00 0.00 36.12 3.53
4843 5353 1.685148 ATACGTACTCCCTCCGTTCC 58.315 55.000 0.00 0.00 36.12 3.62
4844 5354 4.900635 TTAATACGTACTCCCTCCGTTC 57.099 45.455 0.00 0.00 36.12 3.95
4845 5355 5.859205 AATTAATACGTACTCCCTCCGTT 57.141 39.130 0.00 0.00 36.12 4.44
4846 5356 6.491403 ACATAATTAATACGTACTCCCTCCGT 59.509 38.462 0.00 0.00 38.53 4.69
4847 5357 6.805271 CACATAATTAATACGTACTCCCTCCG 59.195 42.308 0.00 0.00 0.00 4.63
4848 5358 7.889469 TCACATAATTAATACGTACTCCCTCC 58.111 38.462 0.00 0.00 0.00 4.30
4849 5359 9.924650 AATCACATAATTAATACGTACTCCCTC 57.075 33.333 0.00 0.00 0.00 4.30
4890 5400 9.845740 AGTGTGCAGTTTATATCATACCAAATA 57.154 29.630 0.00 0.00 0.00 1.40
4891 5401 8.752005 AGTGTGCAGTTTATATCATACCAAAT 57.248 30.769 0.00 0.00 0.00 2.32
4892 5402 9.674068 TTAGTGTGCAGTTTATATCATACCAAA 57.326 29.630 0.00 0.00 0.00 3.28
4893 5403 9.674068 TTTAGTGTGCAGTTTATATCATACCAA 57.326 29.630 0.00 0.00 0.00 3.67
4894 5404 9.104965 GTTTAGTGTGCAGTTTATATCATACCA 57.895 33.333 0.00 0.00 0.00 3.25
4895 5405 8.273557 CGTTTAGTGTGCAGTTTATATCATACC 58.726 37.037 0.00 0.00 0.00 2.73
4896 5406 8.814235 ACGTTTAGTGTGCAGTTTATATCATAC 58.186 33.333 0.00 0.00 0.00 2.39
4897 5407 8.813282 CACGTTTAGTGTGCAGTTTATATCATA 58.187 33.333 0.00 0.00 45.51 2.15
4898 5408 7.684670 CACGTTTAGTGTGCAGTTTATATCAT 58.315 34.615 0.00 0.00 45.51 2.45
4899 5409 7.056002 CACGTTTAGTGTGCAGTTTATATCA 57.944 36.000 0.00 0.00 45.51 2.15
4913 5423 3.675666 TGAGCGCTCAACACGTTTAGTG 61.676 50.000 36.62 1.23 44.66 2.74
4914 5424 1.137513 GAGCGCTCAACACGTTTAGT 58.862 50.000 31.91 0.00 0.00 2.24
4915 5425 1.136611 GTGAGCGCTCAACACGTTTAG 60.137 52.381 39.63 0.00 41.85 1.85
4916 5426 0.856641 GTGAGCGCTCAACACGTTTA 59.143 50.000 39.63 13.11 41.85 2.01
4917 5427 1.641677 GTGAGCGCTCAACACGTTT 59.358 52.632 39.63 0.00 41.85 3.60
4918 5428 2.244651 GGTGAGCGCTCAACACGTT 61.245 57.895 42.62 4.93 46.18 3.99
4919 5429 2.661866 GGTGAGCGCTCAACACGT 60.662 61.111 42.62 5.80 46.18 4.49
4924 5434 0.674581 CTCCAATGGTGAGCGCTCAA 60.675 55.000 39.63 26.77 41.85 3.02
4925 5435 1.078918 CTCCAATGGTGAGCGCTCA 60.079 57.895 35.30 35.30 37.24 4.26
4926 5436 2.467826 GCTCCAATGGTGAGCGCTC 61.468 63.158 30.42 30.42 45.05 5.03
4927 5437 2.437359 GCTCCAATGGTGAGCGCT 60.437 61.111 11.27 11.27 45.05 5.92
4931 5441 1.030488 CAGGCTGCTCCAATGGTGAG 61.030 60.000 0.00 0.00 37.29 3.51
4932 5442 1.001764 CAGGCTGCTCCAATGGTGA 60.002 57.895 0.00 0.00 37.29 4.02
4933 5443 1.001764 TCAGGCTGCTCCAATGGTG 60.002 57.895 10.34 0.00 37.29 4.17
4934 5444 1.302285 CTCAGGCTGCTCCAATGGT 59.698 57.895 10.34 0.00 37.29 3.55
4935 5445 0.747283 GACTCAGGCTGCTCCAATGG 60.747 60.000 10.34 0.00 37.29 3.16
4936 5446 1.088340 CGACTCAGGCTGCTCCAATG 61.088 60.000 10.34 0.00 37.29 2.82
4937 5447 1.220206 CGACTCAGGCTGCTCCAAT 59.780 57.895 10.34 0.00 37.29 3.16
4938 5448 1.758440 AACGACTCAGGCTGCTCCAA 61.758 55.000 10.34 0.00 37.29 3.53
4939 5449 2.210013 AACGACTCAGGCTGCTCCA 61.210 57.895 10.34 0.00 37.29 3.86
4940 5450 1.739562 CAACGACTCAGGCTGCTCC 60.740 63.158 10.34 0.00 0.00 4.70
4941 5451 1.739562 CCAACGACTCAGGCTGCTC 60.740 63.158 10.34 5.79 0.00 4.26
4942 5452 1.548357 ATCCAACGACTCAGGCTGCT 61.548 55.000 10.34 0.00 0.00 4.24
4943 5453 0.674895 AATCCAACGACTCAGGCTGC 60.675 55.000 10.34 0.00 0.00 5.25
4944 5454 1.081892 CAATCCAACGACTCAGGCTG 58.918 55.000 8.58 8.58 0.00 4.85
4945 5455 0.976641 TCAATCCAACGACTCAGGCT 59.023 50.000 0.00 0.00 0.00 4.58
4946 5456 1.079503 GTCAATCCAACGACTCAGGC 58.920 55.000 0.00 0.00 0.00 4.85
4947 5457 1.276421 AGGTCAATCCAACGACTCAGG 59.724 52.381 0.00 0.00 39.02 3.86
4948 5458 2.029020 TCAGGTCAATCCAACGACTCAG 60.029 50.000 0.00 0.00 39.02 3.35
4949 5459 1.967779 TCAGGTCAATCCAACGACTCA 59.032 47.619 0.00 0.00 39.02 3.41
4950 5460 2.743636 TCAGGTCAATCCAACGACTC 57.256 50.000 0.00 0.00 39.02 3.36
4951 5461 3.703001 AATCAGGTCAATCCAACGACT 57.297 42.857 0.00 0.00 39.02 4.18
4952 5462 3.751175 TCAAATCAGGTCAATCCAACGAC 59.249 43.478 0.00 0.00 39.02 4.34
4953 5463 4.014569 TCAAATCAGGTCAATCCAACGA 57.985 40.909 0.00 0.00 39.02 3.85
4954 5464 4.439153 CCATCAAATCAGGTCAATCCAACG 60.439 45.833 0.00 0.00 39.02 4.10
4955 5465 4.678840 GCCATCAAATCAGGTCAATCCAAC 60.679 45.833 0.00 0.00 39.02 3.77
4956 5466 3.448301 GCCATCAAATCAGGTCAATCCAA 59.552 43.478 0.00 0.00 39.02 3.53
4957 5467 3.025978 GCCATCAAATCAGGTCAATCCA 58.974 45.455 0.00 0.00 39.02 3.41
4958 5468 2.363359 GGCCATCAAATCAGGTCAATCC 59.637 50.000 0.00 0.00 0.00 3.01
4959 5469 2.033801 CGGCCATCAAATCAGGTCAATC 59.966 50.000 2.24 0.00 0.00 2.67
4960 5470 2.026641 CGGCCATCAAATCAGGTCAAT 58.973 47.619 2.24 0.00 0.00 2.57
4961 5471 1.462616 CGGCCATCAAATCAGGTCAA 58.537 50.000 2.24 0.00 0.00 3.18
4962 5472 0.394216 CCGGCCATCAAATCAGGTCA 60.394 55.000 2.24 0.00 0.00 4.02
4963 5473 1.103398 CCCGGCCATCAAATCAGGTC 61.103 60.000 2.24 0.00 0.00 3.85
4964 5474 1.076777 CCCGGCCATCAAATCAGGT 60.077 57.895 2.24 0.00 0.00 4.00
4965 5475 0.178981 ATCCCGGCCATCAAATCAGG 60.179 55.000 2.24 0.00 0.00 3.86
4966 5476 1.696063 AATCCCGGCCATCAAATCAG 58.304 50.000 2.24 0.00 0.00 2.90
4967 5477 1.755959 CAAATCCCGGCCATCAAATCA 59.244 47.619 2.24 0.00 0.00 2.57
4968 5478 1.756538 ACAAATCCCGGCCATCAAATC 59.243 47.619 2.24 0.00 0.00 2.17
4969 5479 1.864669 ACAAATCCCGGCCATCAAAT 58.135 45.000 2.24 0.00 0.00 2.32
4970 5480 1.274728 CAACAAATCCCGGCCATCAAA 59.725 47.619 2.24 0.00 0.00 2.69
4971 5481 0.894141 CAACAAATCCCGGCCATCAA 59.106 50.000 2.24 0.00 0.00 2.57
4972 5482 0.969917 CCAACAAATCCCGGCCATCA 60.970 55.000 2.24 0.00 0.00 3.07
4973 5483 0.682855 TCCAACAAATCCCGGCCATC 60.683 55.000 2.24 0.00 0.00 3.51
4974 5484 0.032217 ATCCAACAAATCCCGGCCAT 60.032 50.000 2.24 0.00 0.00 4.40
4975 5485 0.682855 GATCCAACAAATCCCGGCCA 60.683 55.000 2.24 0.00 0.00 5.36
4976 5486 0.395724 AGATCCAACAAATCCCGGCC 60.396 55.000 0.00 0.00 0.00 6.13
4977 5487 0.740737 CAGATCCAACAAATCCCGGC 59.259 55.000 0.00 0.00 0.00 6.13
4978 5488 0.740737 GCAGATCCAACAAATCCCGG 59.259 55.000 0.00 0.00 0.00 5.73
4979 5489 0.740737 GGCAGATCCAACAAATCCCG 59.259 55.000 0.00 0.00 34.01 5.14
4980 5490 1.114627 GGGCAGATCCAACAAATCCC 58.885 55.000 0.00 0.00 36.21 3.85
4981 5491 1.114627 GGGGCAGATCCAACAAATCC 58.885 55.000 0.00 0.00 36.21 3.01
4982 5492 2.149973 AGGGGCAGATCCAACAAATC 57.850 50.000 0.00 0.00 36.21 2.17
4983 5493 2.568509 CAAAGGGGCAGATCCAACAAAT 59.431 45.455 0.00 0.00 36.21 2.32
4984 5494 1.969923 CAAAGGGGCAGATCCAACAAA 59.030 47.619 0.00 0.00 36.21 2.83
4985 5495 1.631405 CAAAGGGGCAGATCCAACAA 58.369 50.000 0.00 0.00 36.21 2.83
4986 5496 0.251742 CCAAAGGGGCAGATCCAACA 60.252 55.000 0.00 0.00 36.21 3.33
4987 5497 2.583472 CCAAAGGGGCAGATCCAAC 58.417 57.895 0.00 0.00 36.21 3.77
4999 5509 7.660030 ATACCAATATCAAAAGACCCAAAGG 57.340 36.000 0.00 0.00 40.04 3.11
5000 5510 9.627123 TCTATACCAATATCAAAAGACCCAAAG 57.373 33.333 0.00 0.00 0.00 2.77
5099 5613 6.185852 GCAGCAGGCATTTTATTTCAAAAT 57.814 33.333 0.00 0.00 43.97 1.82
5115 5639 5.172934 ACAATGTAAATCATTTGCAGCAGG 58.827 37.500 7.03 0.00 43.33 4.85
5149 5675 9.023962 TGATTTTCAGCAGGAGTATTAATTTGT 57.976 29.630 0.00 0.00 0.00 2.83
5152 5678 9.412460 TCATGATTTTCAGCAGGAGTATTAATT 57.588 29.630 0.00 0.00 0.00 1.40
5160 5688 4.674623 GCACTTCATGATTTTCAGCAGGAG 60.675 45.833 0.00 0.00 0.00 3.69
5165 5693 5.056894 AGAAGCACTTCATGATTTTCAGC 57.943 39.130 12.65 0.00 36.94 4.26
5179 5708 7.112779 AGCTATGTACCATAAAAAGAAGCACT 58.887 34.615 0.00 0.00 0.00 4.40
5231 5764 5.568482 TCAACTGCAATATATGTGCGTTTC 58.432 37.500 16.83 0.00 45.27 2.78
5276 5813 4.355437 TCAGTACAACAAAATGCAAACCG 58.645 39.130 0.00 0.00 0.00 4.44
5294 5831 2.046892 GACCACCTGCGCATCAGT 60.047 61.111 12.24 6.26 41.25 3.41
5331 5967 4.036852 CCTGTTTGGTCTCCTCTTTTTCAC 59.963 45.833 0.00 0.00 0.00 3.18
5346 5982 0.540365 ACTGGCCACATCCTGTTTGG 60.540 55.000 0.00 0.00 35.13 3.28
5418 6156 1.642762 AGTTTGATGGGCTTCCTGGAT 59.357 47.619 0.00 0.00 0.00 3.41
5447 6188 0.445436 GCTGGAGTTGAATGTGCGAG 59.555 55.000 0.00 0.00 0.00 5.03
5471 6212 1.481871 CTGGCTGGCATCTGGAATTT 58.518 50.000 3.74 0.00 0.00 1.82
5473 6214 1.455217 GCTGGCTGGCATCTGGAAT 60.455 57.895 3.74 0.00 0.00 3.01
5508 6252 7.228706 AGCATTTGGAAATAATAGTAGGAACGG 59.771 37.037 0.00 0.00 0.00 4.44
5543 6308 4.873827 TGAAAAGTTCAACAAGTACGAGCT 59.126 37.500 0.00 0.00 36.59 4.09
5571 6336 4.018506 CCAGGGGCCATACATCATATAACA 60.019 45.833 4.39 0.00 0.00 2.41
5680 6450 3.312973 AGAACCGATACTCATCAGACGTC 59.687 47.826 7.70 7.70 0.00 4.34
5683 6453 4.902443 TCAGAACCGATACTCATCAGAC 57.098 45.455 0.00 0.00 0.00 3.51
5745 6515 7.796054 AGCTAGGAGTTATCTAAGCATTTCAA 58.204 34.615 0.00 0.00 36.33 2.69
5814 6584 8.150945 AGTTTCTCTTGACTTATGAGCAGTTAA 58.849 33.333 0.00 0.00 32.20 2.01
6120 6930 4.838152 CCGTCCCCATCCTGCACG 62.838 72.222 0.00 0.00 0.00 5.34
6123 6933 4.195334 ATGCCGTCCCCATCCTGC 62.195 66.667 0.00 0.00 0.00 4.85
6124 6934 2.111878 GATGCCGTCCCCATCCTG 59.888 66.667 0.00 0.00 34.43 3.86
6128 6938 4.241555 GAGCGATGCCGTCCCCAT 62.242 66.667 0.00 0.00 38.24 4.00
6132 6942 3.838271 TGAGGAGCGATGCCGTCC 61.838 66.667 0.00 0.00 38.24 4.79
6158 6968 3.326747 GTGCTTTACACCAAGAGATCGT 58.673 45.455 0.00 0.00 44.02 3.73
6253 7063 9.373603 GGTTGTGTACTTGTATATGTATCAACA 57.626 33.333 21.60 12.06 40.69 3.33
6302 7112 6.431722 AGAGGAAGAGATAGTAGCTTCAACT 58.568 40.000 0.00 0.00 39.72 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.