Multiple sequence alignment - TraesCS7D01G133300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G133300 chr7D 100.000 3761 0 0 1 3761 84423184 84419424 0.000000e+00 6946
1 TraesCS7D01G133300 chr7D 87.450 1761 219 2 985 2745 193934991 193936749 0.000000e+00 2026
2 TraesCS7D01G133300 chr7D 82.890 1765 265 19 999 2748 531977470 531975728 0.000000e+00 1552
3 TraesCS7D01G133300 chrUn 93.980 2226 101 16 918 3132 82637493 82635290 0.000000e+00 3338
4 TraesCS7D01G133300 chrUn 88.446 251 20 4 3218 3463 82631510 82631264 1.020000e-75 294
5 TraesCS7D01G133300 chrUn 88.077 260 15 10 134 391 82638278 82638033 1.020000e-75 294
6 TraesCS7D01G133300 chrUn 82.848 309 44 5 3459 3761 339257986 339258291 6.190000e-68 268
7 TraesCS7D01G133300 chrUn 82.848 309 44 5 3459 3761 352851632 352851937 6.190000e-68 268
8 TraesCS7D01G133300 chr7A 93.980 2226 101 16 918 3132 85724143 85726346 0.000000e+00 3338
9 TraesCS7D01G133300 chr7A 87.110 1761 225 2 985 2745 203525499 203527257 0.000000e+00 1993
10 TraesCS7D01G133300 chr7A 88.077 260 15 10 134 391 85723358 85723603 1.020000e-75 294
11 TraesCS7D01G133300 chr7A 88.446 251 20 4 3218 3463 85729755 85730001 1.020000e-75 294
12 TraesCS7D01G133300 chr7A 78.105 306 39 16 429 711 64475112 64474812 6.460000e-38 169
13 TraesCS7D01G133300 chr7B 95.350 1871 77 5 900 2763 34168140 34170007 0.000000e+00 2964
14 TraesCS7D01G133300 chr7B 87.117 1762 223 4 985 2745 157687763 157689521 0.000000e+00 1993
15 TraesCS7D01G133300 chr7B 90.117 597 39 10 2882 3462 34170541 34171133 0.000000e+00 758
16 TraesCS7D01G133300 chr7B 77.684 1071 221 16 1682 2746 409220907 409221965 4.100000e-179 638
17 TraesCS7D01G133300 chr7B 82.178 303 42 7 3462 3761 21995274 21994981 2.240000e-62 250
18 TraesCS7D01G133300 chr1A 83.745 1741 241 25 1036 2745 99318646 99320375 0.000000e+00 1609
19 TraesCS7D01G133300 chr1A 82.284 1716 279 20 1036 2745 443870099 443871795 0.000000e+00 1461
20 TraesCS7D01G133300 chr1A 78.165 316 48 12 494 796 323969292 323968985 8.300000e-42 182
21 TraesCS7D01G133300 chr1A 74.495 396 59 20 428 799 553698390 553698013 2.360000e-27 134
22 TraesCS7D01G133300 chr1A 76.860 242 27 14 494 711 451854373 451854137 3.970000e-20 110
23 TraesCS7D01G133300 chr4D 86.513 304 30 5 3460 3760 289349187 289348892 1.300000e-84 324
24 TraesCS7D01G133300 chr6D 85.017 287 33 4 3477 3761 401670965 401670687 2.210000e-72 283
25 TraesCS7D01G133300 chr6D 76.702 382 60 19 428 788 237813425 237813052 6.420000e-43 185
26 TraesCS7D01G133300 chr6D 76.093 389 60 21 424 789 354989432 354989054 4.990000e-39 172
27 TraesCS7D01G133300 chr4A 82.848 309 44 5 3459 3761 741281449 741281144 6.190000e-68 268
28 TraesCS7D01G133300 chr4A 82.848 309 44 5 3459 3761 741293208 741292903 6.190000e-68 268
29 TraesCS7D01G133300 chr4A 74.510 408 73 19 426 807 737492561 737492159 8.420000e-32 148
30 TraesCS7D01G133300 chr2D 83.168 303 37 8 3462 3760 481652749 481652457 8.010000e-67 265
31 TraesCS7D01G133300 chr2D 80.399 301 46 9 3464 3761 499752104 499752394 2.270000e-52 217
32 TraesCS7D01G133300 chr1D 77.228 404 54 22 429 807 462015988 462015598 6.370000e-48 202
33 TraesCS7D01G133300 chr3A 76.355 406 60 17 428 809 362818689 362818296 6.420000e-43 185
34 TraesCS7D01G133300 chr4B 76.546 388 54 22 428 789 53162669 53162293 1.070000e-40 178
35 TraesCS7D01G133300 chr4B 80.663 181 27 7 626 802 656686894 656686718 2.360000e-27 134
36 TraesCS7D01G133300 chr2B 75.990 404 49 22 428 801 18172172 18172557 8.360000e-37 165
37 TraesCS7D01G133300 chr2B 81.595 163 23 7 446 601 31057535 31057373 1.100000e-25 128
38 TraesCS7D01G133300 chr5D 83.243 185 17 5 624 807 507174771 507174600 1.400000e-34 158
39 TraesCS7D01G133300 chr5D 77.076 301 46 8 428 711 541963997 541964291 6.510000e-33 152
40 TraesCS7D01G133300 chr5D 81.410 156 23 6 446 600 381499290 381499440 5.100000e-24 122
41 TraesCS7D01G133300 chr5A 79.147 211 31 8 512 711 37627796 37627588 2.360000e-27 134


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G133300 chr7D 84419424 84423184 3760 True 6946.000000 6946 100.000000 1 3761 1 chr7D.!!$R1 3760
1 TraesCS7D01G133300 chr7D 193934991 193936749 1758 False 2026.000000 2026 87.450000 985 2745 1 chr7D.!!$F1 1760
2 TraesCS7D01G133300 chr7D 531975728 531977470 1742 True 1552.000000 1552 82.890000 999 2748 1 chr7D.!!$R2 1749
3 TraesCS7D01G133300 chrUn 82631264 82638278 7014 True 1308.666667 3338 90.167667 134 3463 3 chrUn.!!$R1 3329
4 TraesCS7D01G133300 chr7A 203525499 203527257 1758 False 1993.000000 1993 87.110000 985 2745 1 chr7A.!!$F1 1760
5 TraesCS7D01G133300 chr7A 85723358 85730001 6643 False 1308.666667 3338 90.167667 134 3463 3 chr7A.!!$F2 3329
6 TraesCS7D01G133300 chr7B 157687763 157689521 1758 False 1993.000000 1993 87.117000 985 2745 1 chr7B.!!$F1 1760
7 TraesCS7D01G133300 chr7B 34168140 34171133 2993 False 1861.000000 2964 92.733500 900 3462 2 chr7B.!!$F3 2562
8 TraesCS7D01G133300 chr7B 409220907 409221965 1058 False 638.000000 638 77.684000 1682 2746 1 chr7B.!!$F2 1064
9 TraesCS7D01G133300 chr1A 99318646 99320375 1729 False 1609.000000 1609 83.745000 1036 2745 1 chr1A.!!$F1 1709
10 TraesCS7D01G133300 chr1A 443870099 443871795 1696 False 1461.000000 1461 82.284000 1036 2745 1 chr1A.!!$F2 1709

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
970 1032 0.252467 AAGCTGGAGCAGAGGTACCT 60.252 55.0 16.26 16.26 45.16 3.08 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2763 3197 0.366871 CTTGAAGTGATTCGCGGTCG 59.633 55.0 6.13 0.0 0.0 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 9.046296 ACATCAGAAGACGATAAACATTTATCC 57.954 33.333 15.49 5.91 43.77 2.59
28 29 9.045223 CATCAGAAGACGATAAACATTTATCCA 57.955 33.333 15.49 0.00 43.77 3.41
29 30 8.420374 TCAGAAGACGATAAACATTTATCCAC 57.580 34.615 15.49 10.91 43.77 4.02
30 31 7.494625 TCAGAAGACGATAAACATTTATCCACC 59.505 37.037 15.49 7.55 43.77 4.61
31 32 6.766467 AGAAGACGATAAACATTTATCCACCC 59.234 38.462 15.49 5.74 43.77 4.61
32 33 6.248569 AGACGATAAACATTTATCCACCCT 57.751 37.500 15.49 7.34 43.77 4.34
33 34 6.289064 AGACGATAAACATTTATCCACCCTC 58.711 40.000 15.49 5.99 43.77 4.30
34 35 5.374071 ACGATAAACATTTATCCACCCTCC 58.626 41.667 15.49 0.00 43.77 4.30
35 36 5.104277 ACGATAAACATTTATCCACCCTCCA 60.104 40.000 15.49 0.00 43.77 3.86
36 37 6.003950 CGATAAACATTTATCCACCCTCCAT 58.996 40.000 15.49 0.00 43.77 3.41
37 38 6.490040 CGATAAACATTTATCCACCCTCCATT 59.510 38.462 15.49 0.00 43.77 3.16
38 39 7.014230 CGATAAACATTTATCCACCCTCCATTT 59.986 37.037 15.49 0.00 43.77 2.32
39 40 9.362151 GATAAACATTTATCCACCCTCCATTTA 57.638 33.333 11.72 0.00 41.88 1.40
40 41 9.897040 ATAAACATTTATCCACCCTCCATTTAT 57.103 29.630 0.00 0.00 0.00 1.40
42 43 9.897040 AAACATTTATCCACCCTCCATTTATAT 57.103 29.630 0.00 0.00 0.00 0.86
49 50 8.949798 ATCCACCCTCCATTTATATATAGGTT 57.050 34.615 0.00 0.00 0.00 3.50
50 51 8.158025 TCCACCCTCCATTTATATATAGGTTG 57.842 38.462 0.00 0.00 0.00 3.77
51 52 7.964867 TCCACCCTCCATTTATATATAGGTTGA 59.035 37.037 0.00 0.00 0.00 3.18
52 53 8.611257 CCACCCTCCATTTATATATAGGTTGAA 58.389 37.037 0.00 0.00 0.00 2.69
65 66 9.982651 ATATATAGGTTGAATATGATGCGGTAC 57.017 33.333 0.00 0.00 0.00 3.34
66 67 4.689612 AGGTTGAATATGATGCGGTACT 57.310 40.909 0.00 0.00 0.00 2.73
67 68 5.801531 AGGTTGAATATGATGCGGTACTA 57.198 39.130 0.00 0.00 0.00 1.82
68 69 5.539048 AGGTTGAATATGATGCGGTACTAC 58.461 41.667 0.00 0.00 0.00 2.73
69 70 5.304614 AGGTTGAATATGATGCGGTACTACT 59.695 40.000 0.00 0.00 0.00 2.57
70 71 5.634020 GGTTGAATATGATGCGGTACTACTC 59.366 44.000 0.00 0.00 0.00 2.59
71 72 6.448006 GTTGAATATGATGCGGTACTACTCT 58.552 40.000 0.00 0.00 0.00 3.24
72 73 6.255596 TGAATATGATGCGGTACTACTCTC 57.744 41.667 0.00 0.00 0.00 3.20
73 74 4.948608 ATATGATGCGGTACTACTCTCG 57.051 45.455 0.00 0.00 0.00 4.04
74 75 2.034104 TGATGCGGTACTACTCTCGT 57.966 50.000 0.00 0.00 0.00 4.18
75 76 3.183793 TGATGCGGTACTACTCTCGTA 57.816 47.619 0.00 0.00 0.00 3.43
76 77 3.736720 TGATGCGGTACTACTCTCGTAT 58.263 45.455 0.00 0.00 0.00 3.06
77 78 4.886579 TGATGCGGTACTACTCTCGTATA 58.113 43.478 0.00 0.00 0.00 1.47
78 79 5.485620 TGATGCGGTACTACTCTCGTATAT 58.514 41.667 0.00 0.00 0.00 0.86
79 80 5.936372 TGATGCGGTACTACTCTCGTATATT 59.064 40.000 0.00 0.00 0.00 1.28
80 81 5.852738 TGCGGTACTACTCTCGTATATTC 57.147 43.478 0.00 0.00 0.00 1.75
81 82 5.545588 TGCGGTACTACTCTCGTATATTCT 58.454 41.667 0.00 0.00 0.00 2.40
82 83 6.691508 TGCGGTACTACTCTCGTATATTCTA 58.308 40.000 0.00 0.00 0.00 2.10
83 84 7.154656 TGCGGTACTACTCTCGTATATTCTAA 58.845 38.462 0.00 0.00 0.00 2.10
84 85 7.657354 TGCGGTACTACTCTCGTATATTCTAAA 59.343 37.037 0.00 0.00 0.00 1.85
85 86 8.499162 GCGGTACTACTCTCGTATATTCTAAAA 58.501 37.037 0.00 0.00 0.00 1.52
148 149 7.178074 GCGCAACGTTATCTAGTTTTCTTTAT 58.822 34.615 0.30 0.00 0.00 1.40
149 150 7.370059 GCGCAACGTTATCTAGTTTTCTTTATC 59.630 37.037 0.30 0.00 0.00 1.75
150 151 8.592998 CGCAACGTTATCTAGTTTTCTTTATCT 58.407 33.333 0.00 0.00 0.00 1.98
167 168 8.301252 TCTTTATCTTTTATTTAGGGGTTGCC 57.699 34.615 0.00 0.00 0.00 4.52
171 172 2.721425 TTATTTAGGGGTTGCCGGAG 57.279 50.000 5.05 0.00 0.00 4.63
181 182 1.601166 GTTGCCGGAGTGGTAGTTTT 58.399 50.000 5.05 0.00 41.21 2.43
195 196 8.511604 AGTGGTAGTTTTATCAATTGATCTGG 57.488 34.615 23.95 0.00 36.05 3.86
200 201 9.178758 GTAGTTTTATCAATTGATCTGGACCTT 57.821 33.333 23.95 0.87 36.05 3.50
221 222 7.305474 ACCTTTTCGCAAAATAATAGACACAG 58.695 34.615 0.00 0.00 0.00 3.66
226 227 7.841915 TCGCAAAATAATAGACACAGATGAA 57.158 32.000 0.00 0.00 0.00 2.57
227 228 8.262715 TCGCAAAATAATAGACACAGATGAAA 57.737 30.769 0.00 0.00 0.00 2.69
228 229 8.726068 TCGCAAAATAATAGACACAGATGAAAA 58.274 29.630 0.00 0.00 0.00 2.29
256 257 5.925509 AGAAGGCTAACACAAAGTTGACTA 58.074 37.500 0.00 0.00 41.50 2.59
259 260 7.502561 AGAAGGCTAACACAAAGTTGACTAAAT 59.497 33.333 0.00 0.00 41.50 1.40
260 261 7.582667 AGGCTAACACAAAGTTGACTAAATT 57.417 32.000 0.00 0.00 41.50 1.82
298 299 4.527509 TCAAAAGTCAACTTGCAACCAA 57.472 36.364 0.00 0.00 36.12 3.67
303 304 1.021202 TCAACTTGCAACCAACGAGG 58.979 50.000 0.00 0.00 45.67 4.63
304 305 0.594796 CAACTTGCAACCAACGAGGC 60.595 55.000 0.00 0.00 43.14 4.70
305 306 1.034838 AACTTGCAACCAACGAGGCA 61.035 50.000 0.00 0.00 43.14 4.75
306 307 1.034838 ACTTGCAACCAACGAGGCAA 61.035 50.000 0.00 0.00 43.32 4.52
307 308 1.732917 TTGCAACCAACGAGGCAAG 59.267 52.632 0.00 0.00 40.94 4.01
308 309 0.749818 TTGCAACCAACGAGGCAAGA 60.750 50.000 0.00 0.00 40.94 3.02
309 310 1.165907 TGCAACCAACGAGGCAAGAG 61.166 55.000 0.00 0.00 43.14 2.85
310 311 1.166531 GCAACCAACGAGGCAAGAGT 61.167 55.000 0.00 0.00 43.14 3.24
368 369 5.324409 AGACCATTTTTATGGACAGAAGCA 58.676 37.500 10.96 0.00 44.39 3.91
377 378 1.134075 GACAGAAGCATGCGCAGTG 59.866 57.895 18.32 15.28 42.27 3.66
397 428 1.754745 GCAGTCCCCTTGAGACACA 59.245 57.895 0.00 0.00 36.68 3.72
399 430 0.321122 CAGTCCCCTTGAGACACAGC 60.321 60.000 0.00 0.00 36.68 4.40
400 431 0.764369 AGTCCCCTTGAGACACAGCA 60.764 55.000 0.00 0.00 36.68 4.41
406 437 2.744202 CCCTTGAGACACAGCAATGTAC 59.256 50.000 0.00 0.00 31.24 2.90
412 443 3.059884 AGACACAGCAATGTACGACAAG 58.940 45.455 0.00 0.00 31.24 3.16
423 454 6.402118 GCAATGTACGACAAGAGAGCAATTTA 60.402 38.462 0.00 0.00 0.00 1.40
425 456 4.927425 TGTACGACAAGAGAGCAATTTACC 59.073 41.667 0.00 0.00 0.00 2.85
426 457 3.335579 ACGACAAGAGAGCAATTTACCC 58.664 45.455 0.00 0.00 0.00 3.69
438 469 9.077885 GAGAGCAATTTACCCAATATCCATTTA 57.922 33.333 0.00 0.00 0.00 1.40
447 478 5.771666 ACCCAATATCCATTTATGAGTGCAG 59.228 40.000 0.00 0.00 0.00 4.41
471 502 6.211584 AGACTCATCTGCACCTAGTTAAGAAA 59.788 38.462 0.00 0.00 32.29 2.52
472 503 6.769512 ACTCATCTGCACCTAGTTAAGAAAA 58.230 36.000 0.00 0.00 0.00 2.29
548 583 2.607892 GGTGTGTGAGGTGCGCTTC 61.608 63.158 9.73 1.81 0.00 3.86
560 595 3.989817 AGGTGCGCTTCAAATTTCAAATC 59.010 39.130 9.73 0.00 0.00 2.17
565 600 6.301372 GTGCGCTTCAAATTTCAAATCATTTG 59.699 34.615 9.73 3.46 40.39 2.32
583 618 8.865420 ATCATTTGAATATATGAGCAGCTCTT 57.135 30.769 23.15 18.80 34.52 2.85
586 621 7.664082 TTTGAATATATGAGCAGCTCTTAGC 57.336 36.000 23.15 11.88 42.84 3.09
667 724 6.992063 CAGCTACTTAGATGTCCAAATGTT 57.008 37.500 0.00 0.00 35.15 2.71
675 732 8.517878 ACTTAGATGTCCAAATGTTCTGAAATG 58.482 33.333 0.00 0.00 0.00 2.32
678 735 5.199024 TGTCCAAATGTTCTGAAATGTGG 57.801 39.130 12.09 12.09 0.00 4.17
706 763 4.189231 ACCTCACGCACCAAATTATCTAC 58.811 43.478 0.00 0.00 0.00 2.59
711 768 4.574421 CACGCACCAAATTATCTACCATGA 59.426 41.667 0.00 0.00 0.00 3.07
714 771 6.321181 ACGCACCAAATTATCTACCATGATTT 59.679 34.615 0.00 0.00 0.00 2.17
716 773 7.167968 CGCACCAAATTATCTACCATGATTTTG 59.832 37.037 0.00 0.00 30.22 2.44
770 827 8.871742 TTTGTTTTGAATTTTTCATCAACGTG 57.128 26.923 0.00 0.00 39.84 4.49
777 834 1.393603 TTTCATCAACGTGGGTGCAA 58.606 45.000 0.00 0.00 0.00 4.08
783 840 0.664166 CAACGTGGGTGCAAATGAGC 60.664 55.000 0.00 0.00 0.00 4.26
788 845 2.353610 GGGTGCAAATGAGCCTGGG 61.354 63.158 0.00 0.00 0.00 4.45
826 883 4.685628 TCTCGCAATTTGCCTCAATTTTTC 59.314 37.500 15.45 0.00 41.12 2.29
827 884 3.428198 TCGCAATTTGCCTCAATTTTTCG 59.572 39.130 15.45 0.00 41.12 3.46
828 885 3.423384 CGCAATTTGCCTCAATTTTTCGG 60.423 43.478 15.45 0.00 41.12 4.30
829 886 3.120234 GCAATTTGCCTCAATTTTTCGGG 60.120 43.478 10.34 0.00 37.42 5.14
835 892 2.926586 GCCTCAATTTTTCGGGAAGTGC 60.927 50.000 0.00 0.00 0.00 4.40
836 893 2.352715 CCTCAATTTTTCGGGAAGTGCC 60.353 50.000 0.00 0.00 0.00 5.01
847 904 1.754226 GGGAAGTGCCAGACAAACAAA 59.246 47.619 0.00 0.00 38.95 2.83
848 905 2.481276 GGGAAGTGCCAGACAAACAAAC 60.481 50.000 0.00 0.00 38.95 2.93
862 919 8.924691 CAGACAAACAAACAAAAATTGAGAGAA 58.075 29.630 0.00 0.00 0.00 2.87
882 939 8.100508 AGAGAAAAGCCAGACAAACTAATTAC 57.899 34.615 0.00 0.00 0.00 1.89
883 940 7.719633 AGAGAAAAGCCAGACAAACTAATTACA 59.280 33.333 0.00 0.00 0.00 2.41
884 941 8.232913 AGAAAAGCCAGACAAACTAATTACAA 57.767 30.769 0.00 0.00 0.00 2.41
885 942 8.860088 AGAAAAGCCAGACAAACTAATTACAAT 58.140 29.630 0.00 0.00 0.00 2.71
886 943 8.816640 AAAAGCCAGACAAACTAATTACAATG 57.183 30.769 0.00 0.00 0.00 2.82
887 944 7.759489 AAGCCAGACAAACTAATTACAATGA 57.241 32.000 0.00 0.00 0.00 2.57
888 945 7.944729 AGCCAGACAAACTAATTACAATGAT 57.055 32.000 0.00 0.00 0.00 2.45
889 946 9.461312 AAGCCAGACAAACTAATTACAATGATA 57.539 29.630 0.00 0.00 0.00 2.15
890 947 9.632638 AGCCAGACAAACTAATTACAATGATAT 57.367 29.630 0.00 0.00 0.00 1.63
957 1017 7.821359 TCAATCTAGCTATATAAAGCAAGCTGG 59.179 37.037 5.97 3.26 44.70 4.85
968 1030 0.742635 GCAAGCTGGAGCAGAGGTAC 60.743 60.000 0.65 0.00 45.16 3.34
970 1032 0.252467 AAGCTGGAGCAGAGGTACCT 60.252 55.000 16.26 16.26 45.16 3.08
971 1033 0.631753 AGCTGGAGCAGAGGTACCTA 59.368 55.000 16.29 0.00 45.16 3.08
972 1034 1.219213 AGCTGGAGCAGAGGTACCTAT 59.781 52.381 16.29 9.38 45.16 2.57
973 1035 2.447429 AGCTGGAGCAGAGGTACCTATA 59.553 50.000 16.29 0.00 45.16 1.31
974 1036 2.823154 GCTGGAGCAGAGGTACCTATAG 59.177 54.545 16.29 6.65 41.59 1.31
979 1041 6.692008 CTGGAGCAGAGGTACCTATAGTACTT 60.692 46.154 16.29 0.00 43.48 2.24
1024 1086 0.108233 GCAAGGACAGAGAGGAGCAG 60.108 60.000 0.00 0.00 0.00 4.24
1029 1091 1.611851 ACAGAGAGGAGCAGTGGGG 60.612 63.158 0.00 0.00 0.00 4.96
1069 1137 0.399091 CCTAGCCATCCTCCTCCACA 60.399 60.000 0.00 0.00 0.00 4.17
1335 1409 0.253044 ACGGCACCATCATAAGCACT 59.747 50.000 0.00 0.00 0.00 4.40
1576 1656 2.711922 GGGCTGAGGATCGTGACGT 61.712 63.158 4.40 0.00 38.61 4.34
1580 1660 2.324332 CTGAGGATCGTGACGTCGGG 62.324 65.000 11.62 5.15 38.61 5.14
2187 2277 4.048970 TGGCTCCTTCTACTACAACTCT 57.951 45.455 0.00 0.00 0.00 3.24
2539 2632 1.806623 CGGGAGCTGGTAAATTCCTCG 60.807 57.143 0.00 0.00 0.00 4.63
2563 2656 1.203376 TGAAGGACAGGTATGACCCCA 60.203 52.381 0.00 0.00 41.58 4.96
2610 2703 2.110967 CCAGGTGCTCGGCATCAAG 61.111 63.158 11.02 4.01 42.90 3.02
2748 2844 0.886490 AGGCCAGAGTTTGCTCGTTG 60.886 55.000 5.01 0.00 46.03 4.10
2787 3221 2.563976 CGCGAATCACTTCAAGTGTTG 58.436 47.619 17.27 4.37 46.03 3.33
2789 3223 3.303066 CGCGAATCACTTCAAGTGTTGAA 60.303 43.478 17.27 0.00 46.03 2.69
2819 3253 0.979665 TCACCTCTTGCTTCTCAGGG 59.020 55.000 0.00 0.00 0.00 4.45
2837 3271 1.658409 GTTCTGCGCAACCAACTGC 60.658 57.895 13.05 0.00 39.04 4.40
2838 3272 2.117779 TTCTGCGCAACCAACTGCA 61.118 52.632 13.05 0.00 42.77 4.41
2841 3277 4.645921 GCGCAACCAACTGCACCC 62.646 66.667 0.30 0.00 42.77 4.61
2866 3302 5.533482 AGTGACTTTGTGTAGTTAGAGCAG 58.467 41.667 0.00 0.00 0.00 4.24
2877 3313 7.224753 TGTGTAGTTAGAGCAGAAACTTTTCAG 59.775 37.037 4.58 0.00 39.61 3.02
2896 3412 4.116961 TCAGCTTATCCGTATTCGTTTGG 58.883 43.478 0.00 0.00 35.01 3.28
2900 3416 1.375551 ATCCGTATTCGTTTGGCACC 58.624 50.000 0.00 0.00 35.01 5.01
2925 3443 7.093771 CCTTGTCTATGTATTTGGAAGGCTTTT 60.094 37.037 0.00 0.00 0.00 2.27
2950 3468 9.691362 TTTTATTGTCTTTATCAGCTGGAAAAC 57.309 29.630 15.13 14.13 0.00 2.43
2951 3469 5.356882 TTGTCTTTATCAGCTGGAAAACG 57.643 39.130 15.13 8.73 0.00 3.60
3003 3523 7.631377 GCCCATGTTAATTTGCATCTAGACTTT 60.631 37.037 0.00 0.00 0.00 2.66
3004 3524 8.253113 CCCATGTTAATTTGCATCTAGACTTTT 58.747 33.333 0.00 0.00 0.00 2.27
3151 3679 5.120208 CGAAGTCATTGTTACACCTAGTTGG 59.880 44.000 0.00 0.00 42.93 3.77
3158 3686 8.356657 TCATTGTTACACCTAGTTGGATTTTTG 58.643 33.333 0.00 0.00 39.71 2.44
3159 3687 7.883391 TTGTTACACCTAGTTGGATTTTTGA 57.117 32.000 0.00 0.00 39.71 2.69
3161 3689 8.472007 TGTTACACCTAGTTGGATTTTTGAAT 57.528 30.769 0.00 0.00 39.71 2.57
3162 3690 9.575868 TGTTACACCTAGTTGGATTTTTGAATA 57.424 29.630 0.00 0.00 39.71 1.75
3216 7469 3.136626 ACCAATAGTCCCCTCAATGCTAC 59.863 47.826 0.00 0.00 0.00 3.58
3339 7596 7.547019 TCAACTAGATTAAGCTTGAGACACATG 59.453 37.037 9.86 0.00 0.00 3.21
3388 7650 2.698797 TGAGGTCCTGTCGTTTCTCTTT 59.301 45.455 0.00 0.00 0.00 2.52
3453 7722 1.660167 CCAATGCTTGCTCTGATCGA 58.340 50.000 0.00 0.00 0.00 3.59
3465 7734 3.825308 CTCTGATCGATGAGCTTAGAGC 58.175 50.000 7.04 0.00 42.84 4.09
3466 7735 3.217626 TCTGATCGATGAGCTTAGAGCA 58.782 45.455 7.04 0.00 45.56 4.26
3467 7736 3.825585 TCTGATCGATGAGCTTAGAGCAT 59.174 43.478 7.04 0.00 45.56 3.79
3468 7737 4.082841 TCTGATCGATGAGCTTAGAGCATC 60.083 45.833 7.04 2.92 45.56 3.91
3481 7750 1.272781 GAGCATCTTCACTCGTTCGG 58.727 55.000 0.00 0.00 0.00 4.30
3482 7751 0.737715 AGCATCTTCACTCGTTCGGC 60.738 55.000 0.00 0.00 0.00 5.54
3483 7752 1.696832 GCATCTTCACTCGTTCGGCC 61.697 60.000 0.00 0.00 0.00 6.13
3484 7753 1.084370 CATCTTCACTCGTTCGGCCC 61.084 60.000 0.00 0.00 0.00 5.80
3485 7754 2.240162 ATCTTCACTCGTTCGGCCCC 62.240 60.000 0.00 0.00 0.00 5.80
3486 7755 3.234630 CTTCACTCGTTCGGCCCCA 62.235 63.158 0.00 0.00 0.00 4.96
3487 7756 3.234630 TTCACTCGTTCGGCCCCAG 62.235 63.158 0.00 0.00 0.00 4.45
3488 7757 4.760047 CACTCGTTCGGCCCCAGG 62.760 72.222 0.00 0.00 0.00 4.45
3490 7759 4.452733 CTCGTTCGGCCCCAGGAC 62.453 72.222 0.00 0.00 0.00 3.85
3493 7762 4.717313 GTTCGGCCCCAGGACACC 62.717 72.222 0.00 0.00 0.00 4.16
3497 7766 3.961414 GGCCCCAGGACACCGAAA 61.961 66.667 0.00 0.00 0.00 3.46
3498 7767 2.114411 GCCCCAGGACACCGAAAA 59.886 61.111 0.00 0.00 0.00 2.29
3499 7768 1.529713 GCCCCAGGACACCGAAAAA 60.530 57.895 0.00 0.00 0.00 1.94
3500 7769 1.524008 GCCCCAGGACACCGAAAAAG 61.524 60.000 0.00 0.00 0.00 2.27
3501 7770 0.109723 CCCCAGGACACCGAAAAAGA 59.890 55.000 0.00 0.00 0.00 2.52
3502 7771 1.523758 CCCAGGACACCGAAAAAGAG 58.476 55.000 0.00 0.00 0.00 2.85
3503 7772 0.875059 CCAGGACACCGAAAAAGAGC 59.125 55.000 0.00 0.00 0.00 4.09
3504 7773 0.875059 CAGGACACCGAAAAAGAGCC 59.125 55.000 0.00 0.00 0.00 4.70
3505 7774 0.472471 AGGACACCGAAAAAGAGCCA 59.528 50.000 0.00 0.00 0.00 4.75
3506 7775 0.591659 GGACACCGAAAAAGAGCCAC 59.408 55.000 0.00 0.00 0.00 5.01
3507 7776 0.591659 GACACCGAAAAAGAGCCACC 59.408 55.000 0.00 0.00 0.00 4.61
3508 7777 0.182775 ACACCGAAAAAGAGCCACCT 59.817 50.000 0.00 0.00 0.00 4.00
3509 7778 0.593128 CACCGAAAAAGAGCCACCTG 59.407 55.000 0.00 0.00 0.00 4.00
3510 7779 0.537371 ACCGAAAAAGAGCCACCTGG 60.537 55.000 0.00 0.00 38.53 4.45
3511 7780 1.244019 CCGAAAAAGAGCCACCTGGG 61.244 60.000 0.00 0.00 40.85 4.45
3520 7789 4.278513 CCACCTGGGCCAAACCGA 62.279 66.667 8.04 0.00 40.62 4.69
3521 7790 2.983592 CACCTGGGCCAAACCGAC 60.984 66.667 8.04 0.00 40.62 4.79
3522 7791 4.636435 ACCTGGGCCAAACCGACG 62.636 66.667 8.04 0.00 40.62 5.12
3525 7794 4.572571 TGGGCCAAACCGACGCTT 62.573 61.111 2.13 0.00 40.62 4.68
3526 7795 4.038080 GGGCCAAACCGACGCTTG 62.038 66.667 4.39 0.00 40.62 4.01
3527 7796 4.700365 GGCCAAACCGACGCTTGC 62.700 66.667 0.00 0.00 0.00 4.01
3528 7797 3.660111 GCCAAACCGACGCTTGCT 61.660 61.111 0.00 0.00 0.00 3.91
3529 7798 3.030652 CCAAACCGACGCTTGCTT 58.969 55.556 0.00 0.00 0.00 3.91
3530 7799 1.370414 CCAAACCGACGCTTGCTTG 60.370 57.895 0.00 0.00 0.00 4.01
3531 7800 1.370414 CAAACCGACGCTTGCTTGG 60.370 57.895 0.00 0.00 0.00 3.61
3532 7801 3.194272 AAACCGACGCTTGCTTGGC 62.194 57.895 0.00 0.00 0.00 4.52
3533 7802 4.927782 ACCGACGCTTGCTTGGCA 62.928 61.111 0.00 0.00 36.47 4.92
3534 7803 4.389576 CCGACGCTTGCTTGGCAC 62.390 66.667 0.00 0.00 38.71 5.01
3535 7804 4.724697 CGACGCTTGCTTGGCACG 62.725 66.667 0.00 0.00 38.71 5.34
3536 7805 3.649986 GACGCTTGCTTGGCACGT 61.650 61.111 7.65 7.65 42.27 4.49
3537 7806 3.862063 GACGCTTGCTTGGCACGTG 62.862 63.158 12.28 12.28 40.33 4.49
3538 7807 4.688419 CGCTTGCTTGGCACGTGG 62.688 66.667 18.88 0.86 38.71 4.94
3539 7808 4.347453 GCTTGCTTGGCACGTGGG 62.347 66.667 18.88 0.00 38.71 4.61
3540 7809 2.906897 CTTGCTTGGCACGTGGGT 60.907 61.111 18.88 0.00 38.71 4.51
3542 7811 4.497984 TGCTTGGCACGTGGGTGT 62.498 61.111 18.88 0.00 46.13 4.16
3543 7812 3.964875 GCTTGGCACGTGGGTGTG 61.965 66.667 18.88 0.00 46.13 3.82
3544 7813 2.203139 CTTGGCACGTGGGTGTGA 60.203 61.111 18.88 0.00 46.13 3.58
3547 7816 2.972505 GGCACGTGGGTGTGACTG 60.973 66.667 18.88 0.00 44.75 3.51
3548 7817 2.203015 GCACGTGGGTGTGACTGT 60.203 61.111 18.88 0.00 46.13 3.55
3549 7818 2.534019 GCACGTGGGTGTGACTGTG 61.534 63.158 18.88 0.00 46.13 3.66
3550 7819 1.153449 CACGTGGGTGTGACTGTGT 60.153 57.895 7.95 0.00 42.55 3.72
3551 7820 0.742990 CACGTGGGTGTGACTGTGTT 60.743 55.000 7.95 0.00 42.55 3.32
3552 7821 0.461339 ACGTGGGTGTGACTGTGTTC 60.461 55.000 0.00 0.00 0.00 3.18
3553 7822 1.157870 CGTGGGTGTGACTGTGTTCC 61.158 60.000 0.00 0.00 0.00 3.62
3554 7823 0.818040 GTGGGTGTGACTGTGTTCCC 60.818 60.000 0.00 0.00 35.85 3.97
3555 7824 1.275421 TGGGTGTGACTGTGTTCCCA 61.275 55.000 0.00 0.00 41.96 4.37
3556 7825 0.535102 GGGTGTGACTGTGTTCCCAG 60.535 60.000 0.00 0.00 38.45 4.45
3558 7827 1.408266 GGTGTGACTGTGTTCCCAGTT 60.408 52.381 0.00 0.00 45.46 3.16
3559 7828 1.670811 GTGTGACTGTGTTCCCAGTTG 59.329 52.381 0.00 0.00 45.46 3.16
3560 7829 1.557371 TGTGACTGTGTTCCCAGTTGA 59.443 47.619 0.00 0.00 45.46 3.18
3561 7830 1.940613 GTGACTGTGTTCCCAGTTGAC 59.059 52.381 0.00 0.00 45.46 3.18
3562 7831 1.557371 TGACTGTGTTCCCAGTTGACA 59.443 47.619 0.00 0.00 45.46 3.58
3563 7832 1.940613 GACTGTGTTCCCAGTTGACAC 59.059 52.381 0.00 0.00 45.46 3.67
3564 7833 1.308998 CTGTGTTCCCAGTTGACACC 58.691 55.000 3.71 0.00 42.18 4.16
3565 7834 0.106918 TGTGTTCCCAGTTGACACCC 60.107 55.000 3.71 0.00 42.18 4.61
3566 7835 0.822121 GTGTTCCCAGTTGACACCCC 60.822 60.000 0.00 0.00 38.12 4.95
3567 7836 1.228459 GTTCCCAGTTGACACCCCC 60.228 63.158 0.00 0.00 0.00 5.40
3568 7837 1.698116 TTCCCAGTTGACACCCCCA 60.698 57.895 0.00 0.00 0.00 4.96
3569 7838 1.715019 TTCCCAGTTGACACCCCCAG 61.715 60.000 0.00 0.00 0.00 4.45
3570 7839 2.436109 CCAGTTGACACCCCCAGG 59.564 66.667 0.00 0.00 40.04 4.45
3572 7841 1.073199 CAGTTGACACCCCCAGGTC 59.927 63.158 0.00 0.00 46.45 3.85
3573 7842 2.032071 GTTGACACCCCCAGGTCG 59.968 66.667 0.00 0.00 46.45 4.79
3574 7843 3.948719 TTGACACCCCCAGGTCGC 61.949 66.667 0.00 0.00 46.45 5.19
3582 7851 4.169696 CCCAGGTCGCCGCCATAA 62.170 66.667 0.70 0.00 0.00 1.90
3583 7852 2.111043 CCAGGTCGCCGCCATAAT 59.889 61.111 0.70 0.00 0.00 1.28
3584 7853 1.961277 CCAGGTCGCCGCCATAATC 60.961 63.158 0.70 0.00 0.00 1.75
3585 7854 2.029073 AGGTCGCCGCCATAATCG 59.971 61.111 0.70 0.00 0.00 3.34
3586 7855 3.712881 GGTCGCCGCCATAATCGC 61.713 66.667 0.00 0.00 0.00 4.58
3593 7862 3.319904 GCCATAATCGCGCGAACT 58.680 55.556 38.07 27.66 0.00 3.01
3594 7863 1.201825 GCCATAATCGCGCGAACTC 59.798 57.895 38.07 18.00 0.00 3.01
3595 7864 1.482955 CCATAATCGCGCGAACTCG 59.517 57.895 38.07 23.96 43.27 4.18
3596 7865 1.482955 CATAATCGCGCGAACTCGG 59.517 57.895 38.07 20.71 40.23 4.63
3597 7866 2.300787 ATAATCGCGCGAACTCGGC 61.301 57.895 38.07 2.30 40.23 5.54
3598 7867 2.947118 ATAATCGCGCGAACTCGGCA 62.947 55.000 38.07 16.25 40.23 5.69
3601 7870 2.947118 ATCGCGCGAACTCGGCAATA 62.947 55.000 38.07 9.57 40.23 1.90
3602 7871 2.585869 CGCGCGAACTCGGCAATAT 61.586 57.895 28.94 0.00 40.23 1.28
3603 7872 1.641677 GCGCGAACTCGGCAATATT 59.358 52.632 12.10 0.00 40.23 1.28
3604 7873 0.027586 GCGCGAACTCGGCAATATTT 59.972 50.000 12.10 0.00 40.23 1.40
3605 7874 1.915965 GCGCGAACTCGGCAATATTTC 60.916 52.381 12.10 0.00 40.23 2.17
3606 7875 1.326245 CGCGAACTCGGCAATATTTCA 59.674 47.619 0.00 0.00 40.23 2.69
3607 7876 2.032894 CGCGAACTCGGCAATATTTCAT 60.033 45.455 0.00 0.00 40.23 2.57
3608 7877 3.183574 CGCGAACTCGGCAATATTTCATA 59.816 43.478 0.00 0.00 40.23 2.15
3609 7878 4.455124 GCGAACTCGGCAATATTTCATAC 58.545 43.478 0.69 0.00 40.23 2.39
3610 7879 4.025229 GCGAACTCGGCAATATTTCATACA 60.025 41.667 0.69 0.00 40.23 2.29
3611 7880 5.503357 GCGAACTCGGCAATATTTCATACAA 60.503 40.000 0.69 0.00 40.23 2.41
3612 7881 6.482835 CGAACTCGGCAATATTTCATACAAA 58.517 36.000 0.00 0.00 35.37 2.83
3613 7882 7.132213 CGAACTCGGCAATATTTCATACAAAT 58.868 34.615 0.00 0.00 35.37 2.32
3614 7883 7.643764 CGAACTCGGCAATATTTCATACAAATT 59.356 33.333 0.00 0.00 35.37 1.82
3615 7884 9.301153 GAACTCGGCAATATTTCATACAAATTT 57.699 29.630 0.00 0.00 0.00 1.82
3616 7885 8.633075 ACTCGGCAATATTTCATACAAATTTG 57.367 30.769 16.67 16.67 0.00 2.32
3617 7886 8.250332 ACTCGGCAATATTTCATACAAATTTGT 58.750 29.630 25.99 25.99 44.86 2.83
3618 7887 9.729023 CTCGGCAATATTTCATACAAATTTGTA 57.271 29.630 28.30 28.30 46.55 2.41
3619 7888 9.509855 TCGGCAATATTTCATACAAATTTGTAC 57.490 29.630 28.62 14.19 45.47 2.90
3620 7889 9.295214 CGGCAATATTTCATACAAATTTGTACA 57.705 29.630 28.62 17.57 45.47 2.90
3629 7898 9.729023 TTCATACAAATTTGTACAAACTCAGTG 57.271 29.630 28.62 19.94 45.47 3.66
3630 7899 9.114952 TCATACAAATTTGTACAAACTCAGTGA 57.885 29.630 28.62 21.51 45.47 3.41
3631 7900 9.897744 CATACAAATTTGTACAAACTCAGTGAT 57.102 29.630 28.62 10.18 45.47 3.06
3633 7902 8.225603 ACAAATTTGTACAAACTCAGTGATCT 57.774 30.769 22.78 0.63 40.16 2.75
3634 7903 8.131100 ACAAATTTGTACAAACTCAGTGATCTG 58.869 33.333 22.78 7.61 40.16 2.90
3635 7904 6.808008 ATTTGTACAAACTCAGTGATCTGG 57.192 37.500 22.78 0.00 36.44 3.86
3636 7905 3.664107 TGTACAAACTCAGTGATCTGGC 58.336 45.455 0.00 0.00 41.59 4.85
3637 7906 2.936919 ACAAACTCAGTGATCTGGCA 57.063 45.000 0.00 0.00 41.59 4.92
3638 7907 2.498167 ACAAACTCAGTGATCTGGCAC 58.502 47.619 0.00 0.00 41.59 5.01
3639 7908 2.158769 ACAAACTCAGTGATCTGGCACA 60.159 45.455 0.00 0.00 41.19 4.57
3640 7909 2.880268 CAAACTCAGTGATCTGGCACAA 59.120 45.455 0.00 0.00 41.19 3.33
3641 7910 2.936919 ACTCAGTGATCTGGCACAAA 57.063 45.000 0.00 0.00 41.19 2.83
3642 7911 2.498167 ACTCAGTGATCTGGCACAAAC 58.502 47.619 0.00 0.00 41.19 2.93
3643 7912 2.105477 ACTCAGTGATCTGGCACAAACT 59.895 45.455 0.00 0.00 41.19 2.66
3644 7913 2.740981 CTCAGTGATCTGGCACAAACTC 59.259 50.000 0.00 0.00 41.19 3.01
3645 7914 1.462283 CAGTGATCTGGCACAAACTCG 59.538 52.381 0.00 0.00 41.19 4.18
3646 7915 1.344438 AGTGATCTGGCACAAACTCGA 59.656 47.619 0.00 0.00 41.19 4.04
3647 7916 1.461127 GTGATCTGGCACAAACTCGAC 59.539 52.381 0.00 0.00 38.70 4.20
3648 7917 0.716108 GATCTGGCACAAACTCGACG 59.284 55.000 0.00 0.00 38.70 5.12
3649 7918 0.317160 ATCTGGCACAAACTCGACGA 59.683 50.000 0.00 0.00 38.70 4.20
3650 7919 0.317160 TCTGGCACAAACTCGACGAT 59.683 50.000 0.00 0.00 38.70 3.73
3651 7920 1.542472 TCTGGCACAAACTCGACGATA 59.458 47.619 0.00 0.00 38.70 2.92
3652 7921 2.165641 TCTGGCACAAACTCGACGATAT 59.834 45.455 0.00 0.00 38.70 1.63
3653 7922 2.930040 CTGGCACAAACTCGACGATATT 59.070 45.455 0.00 0.00 38.70 1.28
3654 7923 3.331150 TGGCACAAACTCGACGATATTT 58.669 40.909 0.00 0.00 31.92 1.40
3655 7924 3.369756 TGGCACAAACTCGACGATATTTC 59.630 43.478 0.00 0.00 31.92 2.17
3656 7925 3.369756 GGCACAAACTCGACGATATTTCA 59.630 43.478 0.00 0.00 0.00 2.69
3657 7926 4.034048 GGCACAAACTCGACGATATTTCAT 59.966 41.667 0.00 0.00 0.00 2.57
3658 7927 5.447279 GGCACAAACTCGACGATATTTCATT 60.447 40.000 0.00 0.00 0.00 2.57
3659 7928 5.449113 GCACAAACTCGACGATATTTCATTG 59.551 40.000 0.00 1.62 0.00 2.82
3660 7929 6.672118 GCACAAACTCGACGATATTTCATTGA 60.672 38.462 0.00 0.00 0.00 2.57
3661 7930 7.233689 CACAAACTCGACGATATTTCATTGAA 58.766 34.615 0.00 0.00 0.00 2.69
3662 7931 7.744276 CACAAACTCGACGATATTTCATTGAAA 59.256 33.333 13.88 13.88 35.94 2.69
3663 7932 8.450964 ACAAACTCGACGATATTTCATTGAAAT 58.549 29.630 23.96 23.96 43.49 2.17
3664 7933 9.277565 CAAACTCGACGATATTTCATTGAAATT 57.722 29.630 25.24 15.09 41.64 1.82
3665 7934 9.840427 AAACTCGACGATATTTCATTGAAATTT 57.160 25.926 25.24 18.98 41.64 1.82
3697 7966 5.607119 AACAGATAAACAGGCAAACTACG 57.393 39.130 0.00 0.00 0.00 3.51
3698 7967 3.435671 ACAGATAAACAGGCAAACTACGC 59.564 43.478 0.00 0.00 0.00 4.42
3704 7973 3.087176 GGCAAACTACGCCTACGC 58.913 61.111 0.00 0.00 46.56 4.42
3705 7974 2.458610 GGCAAACTACGCCTACGCC 61.459 63.158 0.00 0.00 46.56 5.68
3706 7975 1.447314 GCAAACTACGCCTACGCCT 60.447 57.895 0.00 0.00 45.53 5.52
3707 7976 0.179129 GCAAACTACGCCTACGCCTA 60.179 55.000 0.00 0.00 45.53 3.93
3708 7977 1.836383 CAAACTACGCCTACGCCTAG 58.164 55.000 0.00 0.00 45.53 3.02
3709 7978 0.101939 AAACTACGCCTACGCCTAGC 59.898 55.000 0.00 0.00 45.53 3.42
3710 7979 1.732417 AACTACGCCTACGCCTAGCC 61.732 60.000 0.00 0.00 45.53 3.93
3711 7980 2.908940 TACGCCTACGCCTAGCCC 60.909 66.667 0.00 0.00 45.53 5.19
3712 7981 3.426309 TACGCCTACGCCTAGCCCT 62.426 63.158 0.00 0.00 45.53 5.19
3713 7982 4.286320 CGCCTACGCCTAGCCCTG 62.286 72.222 0.00 0.00 0.00 4.45
3714 7983 4.610714 GCCTACGCCTAGCCCTGC 62.611 72.222 0.00 0.00 0.00 4.85
3715 7984 2.840102 CCTACGCCTAGCCCTGCT 60.840 66.667 0.00 0.00 43.41 4.24
3716 7985 1.530891 CCTACGCCTAGCCCTGCTA 60.531 63.158 0.00 0.00 40.44 3.49
3717 7986 1.660917 CTACGCCTAGCCCTGCTAC 59.339 63.158 0.00 0.00 40.44 3.58
3718 7987 1.807495 CTACGCCTAGCCCTGCTACC 61.807 65.000 0.00 0.00 40.44 3.18
3719 7988 3.930012 CGCCTAGCCCTGCTACCC 61.930 72.222 0.00 0.00 40.44 3.69
3720 7989 3.561241 GCCTAGCCCTGCTACCCC 61.561 72.222 0.00 0.00 40.44 4.95
3721 7990 3.234730 CCTAGCCCTGCTACCCCG 61.235 72.222 0.00 0.00 40.44 5.73
3722 7991 3.930012 CTAGCCCTGCTACCCCGC 61.930 72.222 0.00 0.00 40.44 6.13
3741 8010 3.845259 GCCACCGTCCGCCATCTA 61.845 66.667 0.00 0.00 0.00 1.98
3742 8011 2.106332 CCACCGTCCGCCATCTAC 59.894 66.667 0.00 0.00 0.00 2.59
3743 8012 2.717044 CCACCGTCCGCCATCTACA 61.717 63.158 0.00 0.00 0.00 2.74
3744 8013 1.441729 CACCGTCCGCCATCTACAT 59.558 57.895 0.00 0.00 0.00 2.29
3745 8014 0.875908 CACCGTCCGCCATCTACATG 60.876 60.000 0.00 0.00 0.00 3.21
3746 8015 1.956170 CCGTCCGCCATCTACATGC 60.956 63.158 0.00 0.00 0.00 4.06
3747 8016 1.956170 CGTCCGCCATCTACATGCC 60.956 63.158 0.00 0.00 0.00 4.40
3748 8017 1.956170 GTCCGCCATCTACATGCCG 60.956 63.158 0.00 0.00 30.58 5.69
3749 8018 2.131067 TCCGCCATCTACATGCCGA 61.131 57.895 0.00 0.00 32.53 5.54
3750 8019 1.665916 CCGCCATCTACATGCCGAG 60.666 63.158 0.00 0.00 32.53 4.63
3751 8020 1.665916 CGCCATCTACATGCCGAGG 60.666 63.158 0.00 0.00 32.53 4.63
3752 8021 1.748403 GCCATCTACATGCCGAGGA 59.252 57.895 0.00 0.00 0.00 3.71
3753 8022 0.320247 GCCATCTACATGCCGAGGAG 60.320 60.000 0.00 0.00 0.00 3.69
3754 8023 0.320247 CCATCTACATGCCGAGGAGC 60.320 60.000 0.00 0.00 0.00 4.70
3755 8024 0.320247 CATCTACATGCCGAGGAGCC 60.320 60.000 0.00 0.00 0.00 4.70
3756 8025 0.470833 ATCTACATGCCGAGGAGCCT 60.471 55.000 0.00 0.00 0.00 4.58
3757 8026 1.068753 CTACATGCCGAGGAGCCTG 59.931 63.158 0.00 0.00 34.88 4.85
3758 8027 1.680522 CTACATGCCGAGGAGCCTGT 61.681 60.000 0.00 0.39 43.00 4.00
3759 8028 0.396556 TACATGCCGAGGAGCCTGTA 60.397 55.000 0.00 0.00 41.17 2.74
3760 8029 1.068753 CATGCCGAGGAGCCTGTAG 59.931 63.158 0.00 0.00 0.00 2.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 7.494625 GGTGGATAAATGTTTATCGTCTTCTGA 59.505 37.037 15.53 0.00 46.25 3.27
5 6 7.254795 GGGTGGATAAATGTTTATCGTCTTCTG 60.255 40.741 15.53 0.00 46.25 3.02
6 7 6.766467 GGGTGGATAAATGTTTATCGTCTTCT 59.234 38.462 15.53 0.00 46.25 2.85
7 8 6.766467 AGGGTGGATAAATGTTTATCGTCTTC 59.234 38.462 15.53 5.90 46.25 2.87
8 9 6.659824 AGGGTGGATAAATGTTTATCGTCTT 58.340 36.000 15.53 5.41 46.25 3.01
10 11 5.469084 GGAGGGTGGATAAATGTTTATCGTC 59.531 44.000 15.53 11.76 46.25 4.20
12 13 5.373222 TGGAGGGTGGATAAATGTTTATCG 58.627 41.667 15.53 0.00 46.25 2.92
13 14 7.839680 AATGGAGGGTGGATAAATGTTTATC 57.160 36.000 14.29 14.29 45.16 1.75
14 15 9.897040 ATAAATGGAGGGTGGATAAATGTTTAT 57.103 29.630 0.00 0.00 36.14 1.40
16 17 9.897040 ATATAAATGGAGGGTGGATAAATGTTT 57.103 29.630 0.00 0.00 0.00 2.83
24 25 8.781951 CAACCTATATATAAATGGAGGGTGGAT 58.218 37.037 7.00 0.00 37.99 3.41
25 26 7.964867 TCAACCTATATATAAATGGAGGGTGGA 59.035 37.037 12.91 6.61 41.30 4.02
26 27 8.158025 TCAACCTATATATAAATGGAGGGTGG 57.842 38.462 12.91 4.75 41.30 4.61
39 40 9.982651 GTACCGCATCATATTCAACCTATATAT 57.017 33.333 0.00 0.00 0.00 0.86
40 41 9.197306 AGTACCGCATCATATTCAACCTATATA 57.803 33.333 0.00 0.00 0.00 0.86
41 42 8.079211 AGTACCGCATCATATTCAACCTATAT 57.921 34.615 0.00 0.00 0.00 0.86
42 43 7.476540 AGTACCGCATCATATTCAACCTATA 57.523 36.000 0.00 0.00 0.00 1.31
43 44 6.360370 AGTACCGCATCATATTCAACCTAT 57.640 37.500 0.00 0.00 0.00 2.57
44 45 5.801531 AGTACCGCATCATATTCAACCTA 57.198 39.130 0.00 0.00 0.00 3.08
45 46 4.689612 AGTACCGCATCATATTCAACCT 57.310 40.909 0.00 0.00 0.00 3.50
46 47 5.539048 AGTAGTACCGCATCATATTCAACC 58.461 41.667 0.00 0.00 0.00 3.77
47 48 6.448006 AGAGTAGTACCGCATCATATTCAAC 58.552 40.000 0.00 0.00 0.00 3.18
48 49 6.567891 CGAGAGTAGTACCGCATCATATTCAA 60.568 42.308 0.00 0.00 0.00 2.69
49 50 5.106673 CGAGAGTAGTACCGCATCATATTCA 60.107 44.000 0.00 0.00 0.00 2.57
50 51 5.106634 ACGAGAGTAGTACCGCATCATATTC 60.107 44.000 0.00 0.00 46.88 1.75
51 52 4.760715 ACGAGAGTAGTACCGCATCATATT 59.239 41.667 0.00 0.00 46.88 1.28
52 53 4.325119 ACGAGAGTAGTACCGCATCATAT 58.675 43.478 0.00 0.00 46.88 1.78
53 54 3.736720 ACGAGAGTAGTACCGCATCATA 58.263 45.455 0.00 0.00 46.88 2.15
54 55 2.573369 ACGAGAGTAGTACCGCATCAT 58.427 47.619 0.00 0.00 46.88 2.45
55 56 2.034104 ACGAGAGTAGTACCGCATCA 57.966 50.000 0.00 0.00 46.88 3.07
104 105 3.810373 CGCGTCTTGCTACAGAATTTTT 58.190 40.909 0.00 0.00 43.27 1.94
105 106 2.412847 GCGCGTCTTGCTACAGAATTTT 60.413 45.455 8.43 0.00 43.27 1.82
106 107 1.128692 GCGCGTCTTGCTACAGAATTT 59.871 47.619 8.43 0.00 43.27 1.82
107 108 0.721718 GCGCGTCTTGCTACAGAATT 59.278 50.000 8.43 0.00 43.27 2.17
108 109 0.389817 TGCGCGTCTTGCTACAGAAT 60.390 50.000 8.43 0.00 43.27 2.40
109 110 0.598942 TTGCGCGTCTTGCTACAGAA 60.599 50.000 8.43 0.00 43.27 3.02
110 111 1.006688 TTGCGCGTCTTGCTACAGA 60.007 52.632 8.43 0.00 43.27 3.41
111 112 1.130613 GTTGCGCGTCTTGCTACAG 59.869 57.895 8.43 0.00 43.27 2.74
112 113 2.653967 CGTTGCGCGTCTTGCTACA 61.654 57.895 8.43 0.00 43.27 2.74
113 114 2.093983 CGTTGCGCGTCTTGCTAC 59.906 61.111 8.43 0.00 43.27 3.58
123 124 4.579270 AGAAAACTAGATAACGTTGCGC 57.421 40.909 11.99 0.00 0.00 6.09
124 125 8.592998 AGATAAAGAAAACTAGATAACGTTGCG 58.407 33.333 11.99 0.00 0.00 4.85
148 149 3.010361 TCCGGCAACCCCTAAATAAAAGA 59.990 43.478 0.00 0.00 0.00 2.52
149 150 3.358118 TCCGGCAACCCCTAAATAAAAG 58.642 45.455 0.00 0.00 0.00 2.27
150 151 3.245336 ACTCCGGCAACCCCTAAATAAAA 60.245 43.478 0.00 0.00 0.00 1.52
154 155 0.034477 CACTCCGGCAACCCCTAAAT 60.034 55.000 0.00 0.00 0.00 1.40
161 162 0.250597 AAACTACCACTCCGGCAACC 60.251 55.000 0.00 0.00 39.03 3.77
167 168 6.978343 TCAATTGATAAAACTACCACTCCG 57.022 37.500 3.38 0.00 0.00 4.63
171 172 8.398665 GTCCAGATCAATTGATAAAACTACCAC 58.601 37.037 20.75 4.80 34.37 4.16
181 182 5.296780 GCGAAAAGGTCCAGATCAATTGATA 59.703 40.000 20.75 2.65 34.37 2.15
195 196 7.302524 TGTGTCTATTATTTTGCGAAAAGGTC 58.697 34.615 2.54 0.00 33.22 3.85
200 201 8.262715 TCATCTGTGTCTATTATTTTGCGAAA 57.737 30.769 0.53 0.53 0.00 3.46
266 267 6.069684 AGTTGACTTTTGATGAAGAAGCAG 57.930 37.500 0.00 0.00 0.00 4.24
267 268 6.267817 CAAGTTGACTTTTGATGAAGAAGCA 58.732 36.000 0.00 0.00 33.11 3.91
278 279 3.060628 CGTTGGTTGCAAGTTGACTTTTG 59.939 43.478 7.16 0.00 33.11 2.44
298 299 1.961394 TGTCTTGTACTCTTGCCTCGT 59.039 47.619 0.00 0.00 0.00 4.18
303 304 2.072298 CTGGCTGTCTTGTACTCTTGC 58.928 52.381 0.00 0.00 0.00 4.01
304 305 2.072298 GCTGGCTGTCTTGTACTCTTG 58.928 52.381 0.00 0.00 0.00 3.02
305 306 1.002544 GGCTGGCTGTCTTGTACTCTT 59.997 52.381 0.00 0.00 0.00 2.85
306 307 0.610687 GGCTGGCTGTCTTGTACTCT 59.389 55.000 0.00 0.00 0.00 3.24
307 308 0.610687 AGGCTGGCTGTCTTGTACTC 59.389 55.000 1.67 0.00 0.00 2.59
308 309 1.827969 CTAGGCTGGCTGTCTTGTACT 59.172 52.381 14.70 0.00 0.00 2.73
309 310 1.825474 TCTAGGCTGGCTGTCTTGTAC 59.175 52.381 14.70 0.00 0.00 2.90
310 311 2.103373 CTCTAGGCTGGCTGTCTTGTA 58.897 52.381 14.70 0.00 0.00 2.41
358 359 2.037136 ACTGCGCATGCTTCTGTCC 61.037 57.895 12.24 0.00 43.34 4.02
377 378 2.435059 GTCTCAAGGGGACTGCGC 60.435 66.667 0.00 0.00 42.68 6.09
383 384 1.067295 ATTGCTGTGTCTCAAGGGGA 58.933 50.000 0.00 0.00 0.00 4.81
397 428 2.029020 TGCTCTCTTGTCGTACATTGCT 60.029 45.455 0.00 0.00 0.00 3.91
399 430 5.536554 AATTGCTCTCTTGTCGTACATTG 57.463 39.130 0.00 0.00 0.00 2.82
400 431 6.092259 GGTAAATTGCTCTCTTGTCGTACATT 59.908 38.462 0.00 0.00 0.00 2.71
406 437 3.334691 TGGGTAAATTGCTCTCTTGTCG 58.665 45.455 0.00 0.00 0.00 4.35
412 443 7.530426 AATGGATATTGGGTAAATTGCTCTC 57.470 36.000 0.00 0.00 0.00 3.20
423 454 5.704354 TGCACTCATAAATGGATATTGGGT 58.296 37.500 0.00 0.00 0.00 4.51
425 456 6.713903 AGTCTGCACTCATAAATGGATATTGG 59.286 38.462 0.00 0.00 0.00 3.16
426 457 7.741027 AGTCTGCACTCATAAATGGATATTG 57.259 36.000 0.00 0.00 0.00 1.90
447 478 5.584253 TCTTAACTAGGTGCAGATGAGTC 57.416 43.478 0.00 0.00 0.00 3.36
511 546 6.380846 ACACACCAAATTATCTACCATGCAAT 59.619 34.615 0.00 0.00 0.00 3.56
521 556 3.758554 GCACCTCACACACCAAATTATCT 59.241 43.478 0.00 0.00 0.00 1.98
560 595 8.176365 GCTAAGAGCTGCTCATATATTCAAATG 58.824 37.037 29.49 9.44 38.45 2.32
565 600 7.664082 TTTGCTAAGAGCTGCTCATATATTC 57.336 36.000 29.49 12.76 42.97 1.75
640 697 2.688446 TGGACATCTAAGTAGCTGTCGG 59.312 50.000 13.41 0.00 45.51 4.79
665 722 2.814336 GGTCCACTCCACATTTCAGAAC 59.186 50.000 0.00 0.00 0.00 3.01
666 723 2.711009 AGGTCCACTCCACATTTCAGAA 59.289 45.455 0.00 0.00 0.00 3.02
667 724 2.303022 GAGGTCCACTCCACATTTCAGA 59.697 50.000 0.00 0.00 40.49 3.27
675 732 2.048127 GCGTGAGGTCCACTCCAC 60.048 66.667 0.00 0.00 46.01 4.02
678 735 2.048127 GGTGCGTGAGGTCCACTC 60.048 66.667 0.00 0.00 46.78 3.51
692 749 9.874205 AACAAAATCATGGTAGATAATTTGGTG 57.126 29.630 4.15 0.00 33.30 4.17
761 818 1.269174 TCATTTGCACCCACGTTGATG 59.731 47.619 0.00 0.00 0.00 3.07
762 819 1.541147 CTCATTTGCACCCACGTTGAT 59.459 47.619 0.00 0.00 0.00 2.57
763 820 0.950836 CTCATTTGCACCCACGTTGA 59.049 50.000 0.00 0.00 0.00 3.18
764 821 0.664166 GCTCATTTGCACCCACGTTG 60.664 55.000 0.00 0.00 0.00 4.10
765 822 1.659794 GCTCATTTGCACCCACGTT 59.340 52.632 0.00 0.00 0.00 3.99
767 824 1.973281 AGGCTCATTTGCACCCACG 60.973 57.895 0.00 0.00 34.04 4.94
768 825 1.588082 CAGGCTCATTTGCACCCAC 59.412 57.895 0.00 0.00 34.04 4.61
769 826 1.607178 CCAGGCTCATTTGCACCCA 60.607 57.895 0.00 0.00 34.04 4.51
770 827 2.353610 CCCAGGCTCATTTGCACCC 61.354 63.158 0.00 0.00 34.04 4.61
777 834 2.215451 ATTCGGTGCCCAGGCTCATT 62.215 55.000 10.58 0.00 42.51 2.57
783 840 4.473520 AGCGATTCGGTGCCCAGG 62.474 66.667 10.37 0.00 35.85 4.45
793 850 2.813779 AATTGCGAGAACAGCGATTC 57.186 45.000 0.00 0.00 43.14 2.52
796 853 0.110238 GCAAATTGCGAGAACAGCGA 60.110 50.000 0.90 0.00 37.44 4.93
802 859 3.940209 AATTGAGGCAAATTGCGAGAA 57.060 38.095 12.15 4.42 46.21 2.87
826 883 0.817634 TGTTTGTCTGGCACTTCCCG 60.818 55.000 0.00 0.00 0.00 5.14
827 884 1.398692 TTGTTTGTCTGGCACTTCCC 58.601 50.000 0.00 0.00 0.00 3.97
828 885 2.165437 TGTTTGTTTGTCTGGCACTTCC 59.835 45.455 0.00 0.00 0.00 3.46
829 886 3.502191 TGTTTGTTTGTCTGGCACTTC 57.498 42.857 0.00 0.00 0.00 3.01
835 892 7.545265 TCTCTCAATTTTTGTTTGTTTGTCTGG 59.455 33.333 0.00 0.00 0.00 3.86
836 893 8.464770 TCTCTCAATTTTTGTTTGTTTGTCTG 57.535 30.769 0.00 0.00 0.00 3.51
847 904 6.127366 TGTCTGGCTTTTCTCTCAATTTTTGT 60.127 34.615 0.00 0.00 0.00 2.83
848 905 6.275335 TGTCTGGCTTTTCTCTCAATTTTTG 58.725 36.000 0.00 0.00 0.00 2.44
862 919 8.177119 TCATTGTAATTAGTTTGTCTGGCTTT 57.823 30.769 0.00 0.00 0.00 3.51
909 966 4.362407 ATCACCATGCTTGTGAGTGACAC 61.362 47.826 10.79 0.00 45.20 3.67
972 1034 8.133627 GCGGTTATGACTCTTGAATAAGTACTA 58.866 37.037 0.00 0.00 35.38 1.82
973 1035 6.979238 GCGGTTATGACTCTTGAATAAGTACT 59.021 38.462 0.00 0.00 35.38 2.73
974 1036 6.074994 CGCGGTTATGACTCTTGAATAAGTAC 60.075 42.308 0.00 0.00 35.38 2.73
979 1041 4.642445 TCGCGGTTATGACTCTTGAATA 57.358 40.909 6.13 0.00 0.00 1.75
1625 1705 4.065281 CGTCCAGGTCCGGGTGAC 62.065 72.222 8.03 0.00 43.67 3.67
2165 2255 4.404073 CAGAGTTGTAGTAGAAGGAGCCAT 59.596 45.833 0.00 0.00 0.00 4.40
2166 2256 3.764434 CAGAGTTGTAGTAGAAGGAGCCA 59.236 47.826 0.00 0.00 0.00 4.75
2539 2632 1.209747 GTCATACCTGTCCTTCACCCC 59.790 57.143 0.00 0.00 0.00 4.95
2694 2790 3.712907 GGCCGGCAGAAGTACCCA 61.713 66.667 30.85 0.00 0.00 4.51
2763 3197 0.366871 CTTGAAGTGATTCGCGGTCG 59.633 55.000 6.13 0.00 0.00 4.79
2787 3221 7.093322 AGCAAGAGGTGATGAATTAACATTC 57.907 36.000 0.00 0.00 39.58 2.67
2789 3223 6.888632 AGAAGCAAGAGGTGATGAATTAACAT 59.111 34.615 0.00 0.00 0.00 2.71
2819 3253 1.658409 GCAGTTGGTTGCGCAGAAC 60.658 57.895 11.31 14.89 33.90 3.01
2837 3271 2.223971 ACTACACAAAGTCACTCGGGTG 60.224 50.000 9.85 9.85 44.23 4.61
2838 3272 2.037144 ACTACACAAAGTCACTCGGGT 58.963 47.619 0.00 0.00 0.00 5.28
2841 3277 4.617645 GCTCTAACTACACAAAGTCACTCG 59.382 45.833 0.00 0.00 0.00 4.18
2848 3284 7.484035 AAGTTTCTGCTCTAACTACACAAAG 57.516 36.000 0.00 0.00 33.66 2.77
2866 3302 6.900299 CGAATACGGATAAGCTGAAAAGTTTC 59.100 38.462 0.00 0.00 35.46 2.78
2877 3313 2.610374 TGCCAAACGAATACGGATAAGC 59.390 45.455 0.00 0.00 44.46 3.09
2896 3412 5.066505 CCTTCCAAATACATAGACAAGGTGC 59.933 44.000 0.00 0.00 0.00 5.01
2900 3416 7.396540 AAAGCCTTCCAAATACATAGACAAG 57.603 36.000 0.00 0.00 0.00 3.16
2925 3443 8.020819 CGTTTTCCAGCTGATAAAGACAATAAA 58.979 33.333 17.39 0.00 0.00 1.40
2928 3446 5.473504 ACGTTTTCCAGCTGATAAAGACAAT 59.526 36.000 17.39 1.07 0.00 2.71
2950 3468 1.234821 ACACAACAAGGTGCCATACG 58.765 50.000 0.00 0.00 42.55 3.06
2951 3469 2.288152 CCAACACAACAAGGTGCCATAC 60.288 50.000 0.00 0.00 42.55 2.39
3052 3579 5.163109 TGGAAAATGAAGCCAATCCCTTTTT 60.163 36.000 0.00 0.00 0.00 1.94
3057 3584 5.813513 ATATGGAAAATGAAGCCAATCCC 57.186 39.130 0.00 0.00 34.95 3.85
3061 3588 8.811017 TCTTTGTAATATGGAAAATGAAGCCAA 58.189 29.630 0.00 0.00 34.95 4.52
3106 3634 9.643693 ACTTCGAAAATTTCAAATTGCTATGAT 57.356 25.926 6.53 0.00 0.00 2.45
3107 3635 9.128107 GACTTCGAAAATTTCAAATTGCTATGA 57.872 29.630 6.53 0.00 0.00 2.15
3187 3717 4.047166 TGAGGGGACTATTGGTCAATCAT 58.953 43.478 2.42 0.00 46.16 2.45
3189 3719 4.503714 TTGAGGGGACTATTGGTCAATC 57.496 45.455 2.42 0.00 46.16 2.67
3201 3731 2.769095 AGAGAAGTAGCATTGAGGGGAC 59.231 50.000 0.00 0.00 0.00 4.46
3203 3733 3.454082 AGAAGAGAAGTAGCATTGAGGGG 59.546 47.826 0.00 0.00 0.00 4.79
3216 7469 3.944055 TTGAAGGTCGGAGAAGAGAAG 57.056 47.619 0.00 0.00 39.69 2.85
3257 7514 0.969149 TGCAGATGGTTCTCTCACGT 59.031 50.000 0.00 0.00 0.00 4.49
3258 7515 1.931841 CATGCAGATGGTTCTCTCACG 59.068 52.381 0.00 0.00 0.00 4.35
3259 7516 2.676839 CACATGCAGATGGTTCTCTCAC 59.323 50.000 0.00 0.00 33.39 3.51
3260 7517 2.355412 CCACATGCAGATGGTTCTCTCA 60.355 50.000 10.30 0.00 33.39 3.27
3339 7596 5.397142 AGGCAATTGTCCATCTTCTTTTC 57.603 39.130 17.54 0.00 0.00 2.29
3388 7650 5.087323 TCAAGCTCTAGGAGAAGGAAGAAA 58.913 41.667 0.00 0.00 0.00 2.52
3453 7722 4.499526 CGAGTGAAGATGCTCTAAGCTCAT 60.500 45.833 0.11 0.00 42.97 2.90
3463 7732 0.737715 GCCGAACGAGTGAAGATGCT 60.738 55.000 0.00 0.00 0.00 3.79
3464 7733 1.696832 GGCCGAACGAGTGAAGATGC 61.697 60.000 0.00 0.00 0.00 3.91
3465 7734 1.084370 GGGCCGAACGAGTGAAGATG 61.084 60.000 0.00 0.00 0.00 2.90
3466 7735 1.218316 GGGCCGAACGAGTGAAGAT 59.782 57.895 0.00 0.00 0.00 2.40
3467 7736 2.654877 GGGCCGAACGAGTGAAGA 59.345 61.111 0.00 0.00 0.00 2.87
3468 7737 2.434359 GGGGCCGAACGAGTGAAG 60.434 66.667 0.00 0.00 0.00 3.02
3469 7738 3.234630 CTGGGGCCGAACGAGTGAA 62.235 63.158 0.00 0.00 0.00 3.18
3470 7739 3.691342 CTGGGGCCGAACGAGTGA 61.691 66.667 0.00 0.00 0.00 3.41
3471 7740 4.760047 CCTGGGGCCGAACGAGTG 62.760 72.222 0.00 0.00 0.00 3.51
3473 7742 4.452733 GTCCTGGGGCCGAACGAG 62.453 72.222 0.00 0.00 0.00 4.18
3476 7745 4.717313 GGTGTCCTGGGGCCGAAC 62.717 72.222 0.00 0.00 0.00 3.95
3480 7749 2.987355 TTTTTCGGTGTCCTGGGGCC 62.987 60.000 0.00 0.00 0.00 5.80
3481 7750 1.524008 CTTTTTCGGTGTCCTGGGGC 61.524 60.000 0.00 0.00 0.00 5.80
3482 7751 0.109723 TCTTTTTCGGTGTCCTGGGG 59.890 55.000 0.00 0.00 0.00 4.96
3483 7752 1.523758 CTCTTTTTCGGTGTCCTGGG 58.476 55.000 0.00 0.00 0.00 4.45
3484 7753 0.875059 GCTCTTTTTCGGTGTCCTGG 59.125 55.000 0.00 0.00 0.00 4.45
3485 7754 0.875059 GGCTCTTTTTCGGTGTCCTG 59.125 55.000 0.00 0.00 0.00 3.86
3486 7755 0.472471 TGGCTCTTTTTCGGTGTCCT 59.528 50.000 0.00 0.00 0.00 3.85
3487 7756 0.591659 GTGGCTCTTTTTCGGTGTCC 59.408 55.000 0.00 0.00 0.00 4.02
3488 7757 0.591659 GGTGGCTCTTTTTCGGTGTC 59.408 55.000 0.00 0.00 0.00 3.67
3489 7758 0.182775 AGGTGGCTCTTTTTCGGTGT 59.817 50.000 0.00 0.00 0.00 4.16
3490 7759 0.593128 CAGGTGGCTCTTTTTCGGTG 59.407 55.000 0.00 0.00 0.00 4.94
3491 7760 0.537371 CCAGGTGGCTCTTTTTCGGT 60.537 55.000 0.00 0.00 0.00 4.69
3492 7761 1.244019 CCCAGGTGGCTCTTTTTCGG 61.244 60.000 0.00 0.00 0.00 4.30
3493 7762 2.257353 CCCAGGTGGCTCTTTTTCG 58.743 57.895 0.00 0.00 0.00 3.46
3503 7772 4.278513 TCGGTTTGGCCCAGGTGG 62.279 66.667 0.00 0.00 37.09 4.61
3504 7773 2.983592 GTCGGTTTGGCCCAGGTG 60.984 66.667 0.00 0.00 0.00 4.00
3505 7774 4.636435 CGTCGGTTTGGCCCAGGT 62.636 66.667 0.00 0.00 0.00 4.00
3508 7777 4.572571 AAGCGTCGGTTTGGCCCA 62.573 61.111 3.34 0.00 0.00 5.36
3509 7778 4.038080 CAAGCGTCGGTTTGGCCC 62.038 66.667 7.00 0.00 31.47 5.80
3510 7779 4.700365 GCAAGCGTCGGTTTGGCC 62.700 66.667 7.00 0.00 35.20 5.36
3511 7780 3.194272 AAGCAAGCGTCGGTTTGGC 62.194 57.895 7.00 9.07 35.20 4.52
3512 7781 1.370414 CAAGCAAGCGTCGGTTTGG 60.370 57.895 7.00 0.00 35.20 3.28
3513 7782 1.370414 CCAAGCAAGCGTCGGTTTG 60.370 57.895 7.00 3.70 37.42 2.93
3514 7783 3.030652 CCAAGCAAGCGTCGGTTT 58.969 55.556 7.00 0.00 0.00 3.27
3515 7784 3.660111 GCCAAGCAAGCGTCGGTT 61.660 61.111 3.34 3.34 0.00 4.44
3516 7785 4.927782 TGCCAAGCAAGCGTCGGT 62.928 61.111 0.00 0.00 34.76 4.69
3517 7786 4.389576 GTGCCAAGCAAGCGTCGG 62.390 66.667 0.00 0.00 41.47 4.79
3518 7787 4.724697 CGTGCCAAGCAAGCGTCG 62.725 66.667 0.00 0.00 41.47 5.12
3519 7788 3.649986 ACGTGCCAAGCAAGCGTC 61.650 61.111 2.35 0.00 41.40 5.19
3520 7789 3.952675 CACGTGCCAAGCAAGCGT 61.953 61.111 0.82 1.15 41.40 5.07
3521 7790 4.688419 CCACGTGCCAAGCAAGCG 62.688 66.667 10.91 0.51 41.40 4.68
3522 7791 4.347453 CCCACGTGCCAAGCAAGC 62.347 66.667 10.91 0.00 41.40 4.01
3523 7792 2.906897 ACCCACGTGCCAAGCAAG 60.907 61.111 10.91 0.87 41.47 4.01
3524 7793 3.215568 CACCCACGTGCCAAGCAA 61.216 61.111 10.91 0.00 41.47 3.91
3525 7794 4.497984 ACACCCACGTGCCAAGCA 62.498 61.111 10.91 0.00 44.40 3.91
3526 7795 3.964875 CACACCCACGTGCCAAGC 61.965 66.667 10.91 0.00 44.40 4.01
3527 7796 2.203139 TCACACCCACGTGCCAAG 60.203 61.111 10.91 1.88 44.40 3.61
3528 7797 2.515057 GTCACACCCACGTGCCAA 60.515 61.111 10.91 0.00 44.40 4.52
3529 7798 3.475494 AGTCACACCCACGTGCCA 61.475 61.111 10.91 0.00 44.40 4.92
3530 7799 2.972505 CAGTCACACCCACGTGCC 60.973 66.667 10.91 0.00 44.40 5.01
3531 7800 2.203015 ACAGTCACACCCACGTGC 60.203 61.111 10.91 0.00 44.40 5.34
3532 7801 0.742990 AACACAGTCACACCCACGTG 60.743 55.000 9.08 9.08 46.11 4.49
3533 7802 0.461339 GAACACAGTCACACCCACGT 60.461 55.000 0.00 0.00 0.00 4.49
3534 7803 1.157870 GGAACACAGTCACACCCACG 61.158 60.000 0.00 0.00 0.00 4.94
3535 7804 0.818040 GGGAACACAGTCACACCCAC 60.818 60.000 0.00 0.00 37.50 4.61
3536 7805 1.275421 TGGGAACACAGTCACACCCA 61.275 55.000 0.00 0.00 43.96 4.51
3537 7806 0.535102 CTGGGAACACAGTCACACCC 60.535 60.000 0.00 0.00 37.99 4.61
3538 7807 3.006672 CTGGGAACACAGTCACACC 57.993 57.895 0.00 0.00 35.60 4.16
3545 7814 1.308998 GGTGTCAACTGGGAACACAG 58.691 55.000 2.28 2.28 44.03 3.66
3546 7815 0.106918 GGGTGTCAACTGGGAACACA 60.107 55.000 7.12 0.00 35.60 3.72
3547 7816 0.822121 GGGGTGTCAACTGGGAACAC 60.822 60.000 0.00 0.00 35.60 3.32
3548 7817 1.534697 GGGGTGTCAACTGGGAACA 59.465 57.895 0.00 0.00 39.59 3.18
3549 7818 1.228459 GGGGGTGTCAACTGGGAAC 60.228 63.158 0.00 0.00 0.00 3.62
3550 7819 1.698116 TGGGGGTGTCAACTGGGAA 60.698 57.895 0.00 0.00 0.00 3.97
3551 7820 2.039298 TGGGGGTGTCAACTGGGA 60.039 61.111 0.00 0.00 0.00 4.37
3552 7821 2.436109 CTGGGGGTGTCAACTGGG 59.564 66.667 0.00 0.00 0.00 4.45
3553 7822 2.436109 CCTGGGGGTGTCAACTGG 59.564 66.667 0.00 0.00 0.00 4.00
3554 7823 3.250847 ACCTGGGGGTGTCAACTG 58.749 61.111 0.00 0.00 45.43 3.16
3565 7834 3.476031 ATTATGGCGGCGACCTGGG 62.476 63.158 11.74 0.00 0.00 4.45
3566 7835 1.961277 GATTATGGCGGCGACCTGG 60.961 63.158 11.74 0.00 0.00 4.45
3567 7836 2.310233 CGATTATGGCGGCGACCTG 61.310 63.158 11.74 0.00 0.00 4.00
3568 7837 2.029073 CGATTATGGCGGCGACCT 59.971 61.111 11.74 1.70 0.00 3.85
3569 7838 3.712881 GCGATTATGGCGGCGACC 61.713 66.667 11.74 12.18 0.00 4.79
3576 7845 1.201825 GAGTTCGCGCGATTATGGC 59.798 57.895 35.21 18.25 0.00 4.40
3577 7846 1.482955 CGAGTTCGCGCGATTATGG 59.517 57.895 35.21 18.92 43.02 2.74
3578 7847 1.482955 CCGAGTTCGCGCGATTATG 59.517 57.895 35.21 22.52 43.02 1.90
3579 7848 2.300787 GCCGAGTTCGCGCGATTAT 61.301 57.895 35.21 22.05 43.02 1.28
3580 7849 2.952783 GCCGAGTTCGCGCGATTA 60.953 61.111 35.21 17.95 43.02 1.75
3582 7851 2.947118 TATTGCCGAGTTCGCGCGAT 62.947 55.000 35.21 20.94 43.02 4.58
3583 7852 2.947118 ATATTGCCGAGTTCGCGCGA 62.947 55.000 31.40 31.40 43.02 5.87
3584 7853 2.089433 AATATTGCCGAGTTCGCGCG 62.089 55.000 26.76 26.76 38.01 6.86
3585 7854 0.027586 AAATATTGCCGAGTTCGCGC 59.972 50.000 0.00 0.00 38.18 6.86
3586 7855 1.326245 TGAAATATTGCCGAGTTCGCG 59.674 47.619 0.00 0.00 38.18 5.87
3587 7856 3.609103 ATGAAATATTGCCGAGTTCGC 57.391 42.857 0.00 0.00 38.18 4.70
3588 7857 5.651172 TGTATGAAATATTGCCGAGTTCG 57.349 39.130 0.00 0.00 39.44 3.95
3589 7858 8.856490 AATTTGTATGAAATATTGCCGAGTTC 57.144 30.769 0.00 0.00 0.00 3.01
3590 7859 9.086336 CAAATTTGTATGAAATATTGCCGAGTT 57.914 29.630 10.15 0.00 0.00 3.01
3591 7860 8.250332 ACAAATTTGTATGAAATATTGCCGAGT 58.750 29.630 22.10 0.00 40.16 4.18
3592 7861 8.633075 ACAAATTTGTATGAAATATTGCCGAG 57.367 30.769 22.10 0.00 40.16 4.63
3593 7862 9.509855 GTACAAATTTGTATGAAATATTGCCGA 57.490 29.630 28.69 4.97 44.59 5.54
3594 7863 9.295214 TGTACAAATTTGTATGAAATATTGCCG 57.705 29.630 28.69 0.00 44.59 5.69
3603 7872 9.729023 CACTGAGTTTGTACAAATTTGTATGAA 57.271 29.630 28.69 22.64 44.59 2.57
3604 7873 9.114952 TCACTGAGTTTGTACAAATTTGTATGA 57.885 29.630 28.69 21.66 44.59 2.15
3605 7874 9.897744 ATCACTGAGTTTGTACAAATTTGTATG 57.102 29.630 28.69 20.12 44.59 2.39
3607 7876 9.337396 AGATCACTGAGTTTGTACAAATTTGTA 57.663 29.630 23.91 23.91 42.35 2.41
3608 7877 8.131100 CAGATCACTGAGTTTGTACAAATTTGT 58.869 33.333 25.99 25.99 46.03 2.83
3609 7878 7.592533 CCAGATCACTGAGTTTGTACAAATTTG 59.407 37.037 23.11 16.67 46.03 2.32
3610 7879 7.651808 CCAGATCACTGAGTTTGTACAAATTT 58.348 34.615 23.11 14.80 46.03 1.82
3611 7880 6.294176 GCCAGATCACTGAGTTTGTACAAATT 60.294 38.462 23.11 19.25 46.03 1.82
3612 7881 5.182001 GCCAGATCACTGAGTTTGTACAAAT 59.818 40.000 23.11 12.56 46.03 2.32
3613 7882 4.515191 GCCAGATCACTGAGTTTGTACAAA 59.485 41.667 17.01 17.01 46.03 2.83
3614 7883 4.065088 GCCAGATCACTGAGTTTGTACAA 58.935 43.478 3.59 3.59 46.03 2.41
3615 7884 3.070878 TGCCAGATCACTGAGTTTGTACA 59.929 43.478 0.00 0.00 46.03 2.90
3616 7885 3.433615 GTGCCAGATCACTGAGTTTGTAC 59.566 47.826 0.00 0.00 46.03 2.90
3617 7886 3.070878 TGTGCCAGATCACTGAGTTTGTA 59.929 43.478 0.00 0.00 46.03 2.41
3618 7887 2.158769 TGTGCCAGATCACTGAGTTTGT 60.159 45.455 0.00 0.00 46.03 2.83
3619 7888 2.497138 TGTGCCAGATCACTGAGTTTG 58.503 47.619 0.00 0.00 46.03 2.93
3620 7889 2.936919 TGTGCCAGATCACTGAGTTT 57.063 45.000 0.00 0.00 46.03 2.66
3621 7890 2.880890 GTTTGTGCCAGATCACTGAGTT 59.119 45.455 0.00 0.00 46.03 3.01
3622 7891 2.105477 AGTTTGTGCCAGATCACTGAGT 59.895 45.455 0.00 0.00 46.03 3.41
3623 7892 2.740981 GAGTTTGTGCCAGATCACTGAG 59.259 50.000 0.00 0.00 46.03 3.35
3624 7893 2.771089 GAGTTTGTGCCAGATCACTGA 58.229 47.619 0.00 0.00 46.03 3.41
3625 7894 1.462283 CGAGTTTGTGCCAGATCACTG 59.538 52.381 0.00 0.00 43.12 3.66
3626 7895 1.344438 TCGAGTTTGTGCCAGATCACT 59.656 47.619 0.00 0.00 37.81 3.41
3627 7896 1.461127 GTCGAGTTTGTGCCAGATCAC 59.539 52.381 0.00 0.00 37.48 3.06
3628 7897 1.795768 GTCGAGTTTGTGCCAGATCA 58.204 50.000 0.00 0.00 0.00 2.92
3629 7898 0.716108 CGTCGAGTTTGTGCCAGATC 59.284 55.000 0.00 0.00 0.00 2.75
3630 7899 0.317160 TCGTCGAGTTTGTGCCAGAT 59.683 50.000 0.00 0.00 0.00 2.90
3631 7900 0.317160 ATCGTCGAGTTTGTGCCAGA 59.683 50.000 0.00 0.00 0.00 3.86
3632 7901 1.990799 TATCGTCGAGTTTGTGCCAG 58.009 50.000 0.00 0.00 0.00 4.85
3633 7902 2.665649 ATATCGTCGAGTTTGTGCCA 57.334 45.000 0.00 0.00 0.00 4.92
3634 7903 3.369756 TGAAATATCGTCGAGTTTGTGCC 59.630 43.478 11.68 1.23 0.00 5.01
3635 7904 4.577687 TGAAATATCGTCGAGTTTGTGC 57.422 40.909 11.68 1.50 0.00 4.57
3636 7905 6.761117 TCAATGAAATATCGTCGAGTTTGTG 58.239 36.000 11.68 8.04 0.00 3.33
3637 7906 6.961359 TCAATGAAATATCGTCGAGTTTGT 57.039 33.333 11.68 0.00 0.00 2.83
3638 7907 8.826546 ATTTCAATGAAATATCGTCGAGTTTG 57.173 30.769 18.57 3.73 40.00 2.93
3639 7908 9.840427 AAATTTCAATGAAATATCGTCGAGTTT 57.160 25.926 20.05 6.28 40.77 2.66
3672 7941 6.915843 CGTAGTTTGCCTGTTTATCTGTTTTT 59.084 34.615 0.00 0.00 0.00 1.94
3673 7942 6.435428 CGTAGTTTGCCTGTTTATCTGTTTT 58.565 36.000 0.00 0.00 0.00 2.43
3674 7943 5.562113 GCGTAGTTTGCCTGTTTATCTGTTT 60.562 40.000 0.00 0.00 0.00 2.83
3675 7944 4.083484 GCGTAGTTTGCCTGTTTATCTGTT 60.083 41.667 0.00 0.00 0.00 3.16
3676 7945 3.435671 GCGTAGTTTGCCTGTTTATCTGT 59.564 43.478 0.00 0.00 0.00 3.41
3677 7946 4.003519 GCGTAGTTTGCCTGTTTATCTG 57.996 45.455 0.00 0.00 0.00 2.90
3698 7967 1.530891 TAGCAGGGCTAGGCGTAGG 60.531 63.158 11.50 1.63 40.44 3.18
3699 7968 1.660917 GTAGCAGGGCTAGGCGTAG 59.339 63.158 11.50 9.11 42.11 3.51
3700 7969 1.831286 GGTAGCAGGGCTAGGCGTA 60.831 63.158 11.50 0.00 42.11 4.42
3701 7970 3.155167 GGTAGCAGGGCTAGGCGT 61.155 66.667 10.58 8.10 42.11 5.68
3702 7971 3.930012 GGGTAGCAGGGCTAGGCG 61.930 72.222 10.58 0.00 42.11 5.52
3703 7972 3.561241 GGGGTAGCAGGGCTAGGC 61.561 72.222 8.00 8.00 42.11 3.93
3704 7973 3.234730 CGGGGTAGCAGGGCTAGG 61.235 72.222 0.00 0.00 42.11 3.02
3705 7974 3.930012 GCGGGGTAGCAGGGCTAG 61.930 72.222 0.00 0.00 42.11 3.42
3724 7993 3.845259 TAGATGGCGGACGGTGGC 61.845 66.667 0.00 0.00 0.00 5.01
3725 7994 2.028125 ATGTAGATGGCGGACGGTGG 62.028 60.000 0.00 0.00 0.00 4.61
3726 7995 0.875908 CATGTAGATGGCGGACGGTG 60.876 60.000 0.00 0.00 0.00 4.94
3727 7996 1.441729 CATGTAGATGGCGGACGGT 59.558 57.895 0.00 0.00 0.00 4.83
3728 7997 1.956170 GCATGTAGATGGCGGACGG 60.956 63.158 1.57 0.00 0.00 4.79
3729 7998 1.956170 GGCATGTAGATGGCGGACG 60.956 63.158 10.76 0.00 44.46 4.79
3730 7999 4.049393 GGCATGTAGATGGCGGAC 57.951 61.111 10.76 0.00 44.46 4.79
3735 8004 0.320247 GCTCCTCGGCATGTAGATGG 60.320 60.000 1.57 0.00 0.00 3.51
3736 8005 0.320247 GGCTCCTCGGCATGTAGATG 60.320 60.000 0.00 0.00 38.25 2.90
3737 8006 0.470833 AGGCTCCTCGGCATGTAGAT 60.471 55.000 0.00 0.00 41.46 1.98
3738 8007 1.075970 AGGCTCCTCGGCATGTAGA 60.076 57.895 0.00 0.00 41.46 2.59
3739 8008 1.068753 CAGGCTCCTCGGCATGTAG 59.931 63.158 0.00 0.00 38.88 2.74
3740 8009 3.220222 CAGGCTCCTCGGCATGTA 58.780 61.111 0.00 0.00 38.88 2.29
3743 8012 3.543537 CTACAGGCTCCTCGGCAT 58.456 61.111 0.00 0.00 41.46 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.