Multiple sequence alignment - TraesCS7D01G132000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G132000 chr7D 100.000 4107 0 0 1 4107 83628669 83632775 0.000000e+00 7585.0
1 TraesCS7D01G132000 chr7B 88.959 1902 121 35 1 1879 33078986 33080821 0.000000e+00 2266.0
2 TraesCS7D01G132000 chr7B 92.676 1106 42 17 2014 3112 33080820 33081893 0.000000e+00 1557.0
3 TraesCS7D01G132000 chr7B 94.376 729 19 5 3401 4107 33082113 33082841 0.000000e+00 1099.0
4 TraesCS7D01G132000 chr7B 99.275 138 0 1 1884 2021 150350171 150350035 8.820000e-62 248.0
5 TraesCS7D01G132000 chr7A 90.260 1694 93 25 213 1879 85212421 85214069 0.000000e+00 2148.0
6 TraesCS7D01G132000 chr7A 94.490 1107 43 8 2014 3113 85214068 85215163 0.000000e+00 1690.0
7 TraesCS7D01G132000 chr7A 91.938 707 35 9 3401 4106 85215453 85216138 0.000000e+00 970.0
8 TraesCS7D01G132000 chr7A 91.579 95 7 1 1 95 85212335 85212428 3.330000e-26 130.0
9 TraesCS7D01G132000 chr7A 94.828 58 3 0 3179 3236 85215394 85215451 1.570000e-14 91.6
10 TraesCS7D01G132000 chr4A 98.235 170 3 0 3235 3404 582530144 582529975 8.630000e-77 298.0
11 TraesCS7D01G132000 chr4A 97.945 146 2 1 1884 2029 162809049 162808905 6.820000e-63 252.0
12 TraesCS7D01G132000 chr4A 97.917 144 1 2 1884 2025 497887410 497887553 8.820000e-62 248.0
13 TraesCS7D01G132000 chr5A 97.093 172 5 0 3234 3405 382566806 382566635 1.440000e-74 291.0
14 TraesCS7D01G132000 chr1D 95.604 182 7 1 3232 3413 238940386 238940206 1.440000e-74 291.0
15 TraesCS7D01G132000 chr5D 94.681 188 7 2 3238 3423 420206043 420206229 5.190000e-74 289.0
16 TraesCS7D01G132000 chr6D 96.532 173 5 1 3234 3405 32865338 32865166 6.720000e-73 285.0
17 TraesCS7D01G132000 chr6D 98.571 140 2 0 1884 2023 391746439 391746300 8.820000e-62 248.0
18 TraesCS7D01G132000 chr6D 97.222 144 2 2 1884 2026 113507277 113507419 4.100000e-60 243.0
19 TraesCS7D01G132000 chr3B 93.651 189 9 2 3218 3403 655849398 655849586 3.130000e-71 279.0
20 TraesCS7D01G132000 chr3B 96.078 153 2 3 1884 2035 47377718 47377867 3.170000e-61 246.0
21 TraesCS7D01G132000 chr2A 92.424 198 11 4 3238 3434 94112550 94112356 3.130000e-71 279.0
22 TraesCS7D01G132000 chr2A 98.561 139 2 0 1884 2022 63799767 63799629 3.170000e-61 246.0
23 TraesCS7D01G132000 chr6B 93.122 189 13 0 3234 3422 99368553 99368741 1.120000e-70 278.0
24 TraesCS7D01G132000 chr2D 92.784 194 10 3 3212 3402 309971611 309971419 1.120000e-70 278.0
25 TraesCS7D01G132000 chr3A 99.281 139 1 0 1884 2022 718945620 718945482 6.820000e-63 252.0
26 TraesCS7D01G132000 chr2B 98.582 141 1 1 1884 2023 601198784 601198924 8.820000e-62 248.0
27 TraesCS7D01G132000 chr4D 88.889 72 2 1 3037 3108 186062205 186062270 2.630000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G132000 chr7D 83628669 83632775 4106 False 7585.000000 7585 100.000000 1 4107 1 chr7D.!!$F1 4106
1 TraesCS7D01G132000 chr7B 33078986 33082841 3855 False 1640.666667 2266 92.003667 1 4107 3 chr7B.!!$F1 4106
2 TraesCS7D01G132000 chr7A 85212335 85216138 3803 False 1005.920000 2148 92.619000 1 4106 5 chr7A.!!$F1 4105

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
145 146 0.249114 GAGCGACAAGGGCTACTAGC 60.249 60.0 0.0 0.0 41.72 3.42 F
468 475 0.983964 CGTAATCGACCGTACTCGCG 60.984 60.0 0.0 0.0 39.71 5.87 F
1895 1951 0.104120 GTGTTTTTGGACAGGGGTGC 59.896 55.0 0.0 0.0 35.66 5.01 F
1924 1980 0.179037 TGCTATCCATGTGCCAGAGC 60.179 55.0 0.0 0.0 40.48 4.09 F
2749 2805 0.179018 GTTGGACTGCTGAGTTGGGT 60.179 55.0 0.0 0.0 30.16 4.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1345 1376 0.035317 ACTGCTGCATCCAAGAACGA 59.965 50.000 1.31 0.0 0.00 3.85 R
1905 1961 0.179037 GCTCTGGCACATGGATAGCA 60.179 55.000 0.00 0.0 38.20 3.49 R
2749 2805 1.323271 CCTCCAGTGCTCTTCGCCTA 61.323 60.000 0.00 0.0 38.05 3.93 R
2941 3003 2.252072 GACCACTGGGCCGCTTGATA 62.252 60.000 0.00 0.0 37.90 2.15 R
3720 3976 4.182132 CTCTCTGAGCAGCAACGG 57.818 61.111 0.00 0.0 0.00 4.44 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
69 70 7.473735 TTGTTATCCACCTGCAATGAAAATA 57.526 32.000 0.00 0.00 0.00 1.40
120 121 6.753913 TCTTAGACATAAAGGATCTGGCAT 57.246 37.500 0.00 0.00 0.00 4.40
132 133 2.515926 TCTGGCATATTCTGAGCGAC 57.484 50.000 0.00 0.00 0.00 5.19
133 134 1.756538 TCTGGCATATTCTGAGCGACA 59.243 47.619 0.00 0.00 0.00 4.35
137 138 1.869767 GCATATTCTGAGCGACAAGGG 59.130 52.381 0.00 0.00 0.00 3.95
139 140 1.195115 TATTCTGAGCGACAAGGGCT 58.805 50.000 0.00 0.00 45.00 5.19
142 143 0.612174 TCTGAGCGACAAGGGCTACT 60.612 55.000 0.00 0.00 41.72 2.57
145 146 0.249114 GAGCGACAAGGGCTACTAGC 60.249 60.000 0.00 0.00 41.72 3.42
158 159 1.811645 TACTAGCCACAGCACACGCA 61.812 55.000 0.00 0.00 43.56 5.24
162 163 2.250939 GCCACAGCACACGCAAGTA 61.251 57.895 0.00 0.00 45.54 2.24
163 164 2.443957 GCCACAGCACACGCAAGTAC 62.444 60.000 0.00 0.00 45.54 2.73
194 195 1.196354 GAGCCATGTAATCGCATGAGC 59.804 52.381 0.00 8.81 46.65 4.26
240 241 2.685897 TCAAATTAACACCGGCTATGGC 59.314 45.455 0.00 0.00 37.82 4.40
252 253 2.864114 CTATGGCAGCAGCAACAGT 58.136 52.632 2.65 0.00 44.61 3.55
254 255 2.358957 CTATGGCAGCAGCAACAGTAA 58.641 47.619 2.65 0.00 44.61 2.24
256 257 1.207593 GGCAGCAGCAACAGTAACG 59.792 57.895 2.65 0.00 44.61 3.18
257 258 1.207593 GCAGCAGCAACAGTAACGG 59.792 57.895 0.00 0.00 41.58 4.44
258 259 1.227999 GCAGCAGCAACAGTAACGGA 61.228 55.000 0.00 0.00 41.58 4.69
261 262 2.032799 CAGCAGCAACAGTAACGGAAAA 59.967 45.455 0.00 0.00 0.00 2.29
262 263 2.884639 AGCAGCAACAGTAACGGAAAAT 59.115 40.909 0.00 0.00 0.00 1.82
263 264 3.317993 AGCAGCAACAGTAACGGAAAATT 59.682 39.130 0.00 0.00 0.00 1.82
264 265 3.425193 GCAGCAACAGTAACGGAAAATTG 59.575 43.478 0.00 0.00 0.00 2.32
266 267 4.675114 CAGCAACAGTAACGGAAAATTGAC 59.325 41.667 0.00 0.00 0.00 3.18
271 278 7.254286 GCAACAGTAACGGAAAATTGACAAAAT 60.254 33.333 0.00 0.00 0.00 1.82
294 301 2.594592 AGCCTTCCACCGCACAAC 60.595 61.111 0.00 0.00 0.00 3.32
357 364 2.100631 GCCGACCAACGAGTCCATG 61.101 63.158 0.00 0.00 45.77 3.66
459 466 1.134560 AGCTCTTCACCGTAATCGACC 59.865 52.381 0.00 0.00 39.71 4.79
468 475 0.983964 CGTAATCGACCGTACTCGCG 60.984 60.000 0.00 0.00 39.71 5.87
471 478 1.638388 AATCGACCGTACTCGCGTCA 61.638 55.000 5.77 0.00 37.22 4.35
496 503 4.586841 CCAAGTAAACAAACCCATCCTTCA 59.413 41.667 0.00 0.00 0.00 3.02
502 509 3.622060 AACCCATCCTTCACGGCGG 62.622 63.158 13.24 0.00 0.00 6.13
782 792 2.894387 GAGCGCCATGAGGTCTGC 60.894 66.667 2.29 0.00 37.19 4.26
820 830 1.453928 GGGGCCAAAAGAGGATCCG 60.454 63.158 4.39 0.00 33.66 4.18
839 849 1.227823 AGGCTACAAGCACGTGCAA 60.228 52.632 39.21 21.35 44.75 4.08
863 873 2.835431 CTCCCAGCCGTCCGATCT 60.835 66.667 0.00 0.00 0.00 2.75
864 874 2.833582 TCCCAGCCGTCCGATCTC 60.834 66.667 0.00 0.00 0.00 2.75
1205 1231 2.418910 GCTGTCGAGGCTGCTAGGA 61.419 63.158 0.00 0.00 0.00 2.94
1336 1367 1.526917 GCCCATCCATCCCTGTTCG 60.527 63.158 0.00 0.00 0.00 3.95
1337 1368 1.915228 CCCATCCATCCCTGTTCGT 59.085 57.895 0.00 0.00 0.00 3.85
1338 1369 1.128200 CCCATCCATCCCTGTTCGTA 58.872 55.000 0.00 0.00 0.00 3.43
1339 1370 1.699634 CCCATCCATCCCTGTTCGTAT 59.300 52.381 0.00 0.00 0.00 3.06
1340 1371 2.550855 CCCATCCATCCCTGTTCGTATG 60.551 54.545 0.00 0.00 0.00 2.39
1341 1372 2.368548 CCATCCATCCCTGTTCGTATGA 59.631 50.000 0.00 0.00 0.00 2.15
1342 1373 3.555795 CCATCCATCCCTGTTCGTATGAG 60.556 52.174 0.00 0.00 0.00 2.90
1343 1374 2.039418 TCCATCCCTGTTCGTATGAGG 58.961 52.381 0.00 0.00 0.00 3.86
1344 1375 1.762957 CCATCCCTGTTCGTATGAGGT 59.237 52.381 0.00 0.00 0.00 3.85
1345 1376 2.170607 CCATCCCTGTTCGTATGAGGTT 59.829 50.000 0.00 0.00 0.00 3.50
1346 1377 3.458189 CATCCCTGTTCGTATGAGGTTC 58.542 50.000 0.00 0.00 0.00 3.62
1369 1411 2.221906 CTTGGATGCAGCAGTTGGCC 62.222 60.000 3.51 0.00 46.50 5.36
1381 1423 1.818060 CAGTTGGCCGGATTTTGATCA 59.182 47.619 5.05 0.00 0.00 2.92
1498 1542 5.180868 CAGGAAAATGCTGAGCAGATATACC 59.819 44.000 14.36 11.09 43.65 2.73
1591 1640 7.733402 TTTTGTGTACTGTACATTCTAACCC 57.267 36.000 22.21 8.59 41.34 4.11
1592 1641 6.422344 TTGTGTACTGTACATTCTAACCCA 57.578 37.500 22.21 10.89 41.34 4.51
1593 1642 5.786311 TGTGTACTGTACATTCTAACCCAC 58.214 41.667 22.21 7.30 41.34 4.61
1632 1688 2.751806 CCTGATTGAGAGTTTTCTGGCC 59.248 50.000 0.00 0.00 32.53 5.36
1634 1690 1.740025 GATTGAGAGTTTTCTGGCCGG 59.260 52.381 4.71 4.71 32.53 6.13
1653 1709 1.367659 GTGTGCAGGCTGAAGATCTC 58.632 55.000 20.86 1.35 0.00 2.75
1709 1765 0.995675 AAGGCTGGCCCCAGTGATAT 60.996 55.000 15.28 0.00 45.24 1.63
1756 1812 9.770097 CTATGATACACTTCATATGTCCAGTTT 57.230 33.333 1.90 0.40 37.81 2.66
1815 1871 7.359595 TGGAGAATATTCAGTGTTTTTGTTCG 58.640 34.615 17.56 0.00 0.00 3.95
1888 1944 6.723298 AAATGGTATCAGTGTTTTTGGACA 57.277 33.333 0.00 0.00 0.00 4.02
1889 1945 5.964958 ATGGTATCAGTGTTTTTGGACAG 57.035 39.130 0.00 0.00 0.00 3.51
1890 1946 4.141287 TGGTATCAGTGTTTTTGGACAGG 58.859 43.478 0.00 0.00 0.00 4.00
1891 1947 3.506067 GGTATCAGTGTTTTTGGACAGGG 59.494 47.826 0.00 0.00 0.00 4.45
1892 1948 2.065899 TCAGTGTTTTTGGACAGGGG 57.934 50.000 0.00 0.00 0.00 4.79
1893 1949 1.286553 TCAGTGTTTTTGGACAGGGGT 59.713 47.619 0.00 0.00 0.00 4.95
1894 1950 1.408702 CAGTGTTTTTGGACAGGGGTG 59.591 52.381 0.00 0.00 0.00 4.61
1895 1951 0.104120 GTGTTTTTGGACAGGGGTGC 59.896 55.000 0.00 0.00 35.66 5.01
1896 1952 1.362355 GTTTTTGGACAGGGGTGCG 59.638 57.895 0.00 0.00 38.35 5.34
1897 1953 1.076632 TTTTTGGACAGGGGTGCGT 60.077 52.632 0.00 0.00 38.35 5.24
1898 1954 1.388065 TTTTTGGACAGGGGTGCGTG 61.388 55.000 0.00 0.00 38.35 5.34
1899 1955 3.783362 TTTGGACAGGGGTGCGTGG 62.783 63.158 0.00 0.00 38.35 4.94
1901 1957 3.948719 GGACAGGGGTGCGTGGAA 61.949 66.667 0.00 0.00 0.00 3.53
1902 1958 2.358737 GACAGGGGTGCGTGGAAG 60.359 66.667 0.00 0.00 0.00 3.46
1903 1959 4.643387 ACAGGGGTGCGTGGAAGC 62.643 66.667 0.00 0.00 37.71 3.86
1904 1960 4.335647 CAGGGGTGCGTGGAAGCT 62.336 66.667 0.00 0.00 38.13 3.74
1905 1961 3.570212 AGGGGTGCGTGGAAGCTT 61.570 61.111 0.00 0.00 38.13 3.74
1906 1962 3.365265 GGGGTGCGTGGAAGCTTG 61.365 66.667 2.10 0.00 38.13 4.01
1907 1963 4.043200 GGGTGCGTGGAAGCTTGC 62.043 66.667 11.58 11.58 38.13 4.01
1908 1964 2.980233 GGTGCGTGGAAGCTTGCT 60.980 61.111 19.34 0.00 38.13 3.91
1909 1965 1.671054 GGTGCGTGGAAGCTTGCTA 60.671 57.895 19.34 2.82 38.13 3.49
1910 1966 1.026718 GGTGCGTGGAAGCTTGCTAT 61.027 55.000 19.34 0.00 38.13 2.97
1911 1967 0.375106 GTGCGTGGAAGCTTGCTATC 59.625 55.000 19.34 8.59 38.13 2.08
1912 1968 0.744414 TGCGTGGAAGCTTGCTATCC 60.744 55.000 19.34 6.99 38.13 2.59
1913 1969 0.744414 GCGTGGAAGCTTGCTATCCA 60.744 55.000 19.34 9.80 40.84 3.41
1914 1970 1.959042 CGTGGAAGCTTGCTATCCAT 58.041 50.000 19.34 0.00 44.55 3.41
1915 1971 1.600957 CGTGGAAGCTTGCTATCCATG 59.399 52.381 19.34 20.51 44.55 3.66
1916 1972 2.648059 GTGGAAGCTTGCTATCCATGT 58.352 47.619 19.34 0.00 44.55 3.21
1917 1973 2.357009 GTGGAAGCTTGCTATCCATGTG 59.643 50.000 19.34 0.00 44.55 3.21
1918 1974 1.336125 GGAAGCTTGCTATCCATGTGC 59.664 52.381 11.19 0.00 33.30 4.57
1919 1975 1.336125 GAAGCTTGCTATCCATGTGCC 59.664 52.381 2.10 0.00 0.00 5.01
1920 1976 0.256752 AGCTTGCTATCCATGTGCCA 59.743 50.000 0.00 0.00 0.00 4.92
1921 1977 0.666913 GCTTGCTATCCATGTGCCAG 59.333 55.000 0.00 0.00 0.00 4.85
1922 1978 1.748244 GCTTGCTATCCATGTGCCAGA 60.748 52.381 0.00 0.00 0.00 3.86
1923 1979 2.219458 CTTGCTATCCATGTGCCAGAG 58.781 52.381 0.00 0.00 0.00 3.35
1924 1980 0.179037 TGCTATCCATGTGCCAGAGC 60.179 55.000 0.00 0.00 40.48 4.09
1925 1981 0.888285 GCTATCCATGTGCCAGAGCC 60.888 60.000 0.00 0.00 38.69 4.70
1926 1982 0.471191 CTATCCATGTGCCAGAGCCA 59.529 55.000 0.00 0.00 38.69 4.75
1927 1983 1.073444 CTATCCATGTGCCAGAGCCAT 59.927 52.381 0.00 0.00 38.69 4.40
1928 1984 0.467474 ATCCATGTGCCAGAGCCATG 60.467 55.000 8.59 8.59 42.54 3.66
1929 1985 1.077285 CCATGTGCCAGAGCCATGA 60.077 57.895 14.22 0.00 44.14 3.07
1930 1986 1.101635 CCATGTGCCAGAGCCATGAG 61.102 60.000 14.22 5.17 44.14 2.90
1931 1987 0.393944 CATGTGCCAGAGCCATGAGT 60.394 55.000 0.00 0.00 44.14 3.41
1932 1988 0.330604 ATGTGCCAGAGCCATGAGTT 59.669 50.000 0.00 0.00 38.69 3.01
1933 1989 0.607217 TGTGCCAGAGCCATGAGTTG 60.607 55.000 0.00 0.00 38.69 3.16
1942 1998 3.231734 CCATGAGTTGGTTGCGAGA 57.768 52.632 0.00 0.00 40.99 4.04
1943 1999 1.742761 CCATGAGTTGGTTGCGAGAT 58.257 50.000 0.00 0.00 40.99 2.75
1944 2000 1.667724 CCATGAGTTGGTTGCGAGATC 59.332 52.381 0.00 0.00 40.99 2.75
1945 2001 2.625737 CATGAGTTGGTTGCGAGATCT 58.374 47.619 0.00 0.00 0.00 2.75
1946 2002 2.839486 TGAGTTGGTTGCGAGATCTT 57.161 45.000 0.00 0.00 0.00 2.40
1947 2003 3.953712 TGAGTTGGTTGCGAGATCTTA 57.046 42.857 0.00 0.00 0.00 2.10
1948 2004 4.471904 TGAGTTGGTTGCGAGATCTTAT 57.528 40.909 0.00 0.00 0.00 1.73
1949 2005 4.183865 TGAGTTGGTTGCGAGATCTTATG 58.816 43.478 0.00 0.00 0.00 1.90
1950 2006 3.535561 AGTTGGTTGCGAGATCTTATGG 58.464 45.455 0.00 0.00 0.00 2.74
1951 2007 2.614057 GTTGGTTGCGAGATCTTATGGG 59.386 50.000 0.00 0.00 0.00 4.00
1952 2008 1.837439 TGGTTGCGAGATCTTATGGGT 59.163 47.619 0.00 0.00 0.00 4.51
1953 2009 2.238646 TGGTTGCGAGATCTTATGGGTT 59.761 45.455 0.00 0.00 0.00 4.11
1954 2010 3.279434 GGTTGCGAGATCTTATGGGTTT 58.721 45.455 0.00 0.00 0.00 3.27
1955 2011 3.312697 GGTTGCGAGATCTTATGGGTTTC 59.687 47.826 0.00 0.00 0.00 2.78
1956 2012 3.904800 TGCGAGATCTTATGGGTTTCA 57.095 42.857 0.00 0.00 0.00 2.69
1957 2013 3.531538 TGCGAGATCTTATGGGTTTCAC 58.468 45.455 0.00 0.00 0.00 3.18
1958 2014 2.872858 GCGAGATCTTATGGGTTTCACC 59.127 50.000 0.00 0.00 37.60 4.02
1959 2015 3.432326 GCGAGATCTTATGGGTTTCACCT 60.432 47.826 0.00 0.00 38.64 4.00
1960 2016 4.372656 CGAGATCTTATGGGTTTCACCTC 58.627 47.826 0.00 0.00 38.64 3.85
1961 2017 4.100189 CGAGATCTTATGGGTTTCACCTCT 59.900 45.833 0.00 0.00 38.64 3.69
1962 2018 5.302059 CGAGATCTTATGGGTTTCACCTCTA 59.698 44.000 0.00 0.00 38.64 2.43
1963 2019 6.515862 CGAGATCTTATGGGTTTCACCTCTAG 60.516 46.154 0.00 0.00 38.64 2.43
1964 2020 4.755266 TCTTATGGGTTTCACCTCTAGC 57.245 45.455 0.00 0.00 38.64 3.42
1965 2021 3.454812 TCTTATGGGTTTCACCTCTAGCC 59.545 47.826 0.00 0.00 38.64 3.93
1966 2022 1.972588 ATGGGTTTCACCTCTAGCCT 58.027 50.000 0.00 0.00 38.64 4.58
1967 2023 2.634639 TGGGTTTCACCTCTAGCCTA 57.365 50.000 0.00 0.00 38.64 3.93
1968 2024 2.185387 TGGGTTTCACCTCTAGCCTAC 58.815 52.381 0.00 0.00 38.64 3.18
1969 2025 1.485480 GGGTTTCACCTCTAGCCTACC 59.515 57.143 0.00 0.00 38.64 3.18
1970 2026 1.485480 GGTTTCACCTCTAGCCTACCC 59.515 57.143 0.00 0.00 34.73 3.69
1971 2027 1.485480 GTTTCACCTCTAGCCTACCCC 59.515 57.143 0.00 0.00 0.00 4.95
1972 2028 0.714180 TTCACCTCTAGCCTACCCCA 59.286 55.000 0.00 0.00 0.00 4.96
1973 2029 0.714180 TCACCTCTAGCCTACCCCAA 59.286 55.000 0.00 0.00 0.00 4.12
1974 2030 0.831307 CACCTCTAGCCTACCCCAAC 59.169 60.000 0.00 0.00 0.00 3.77
1975 2031 0.717196 ACCTCTAGCCTACCCCAACT 59.283 55.000 0.00 0.00 0.00 3.16
1976 2032 1.080666 ACCTCTAGCCTACCCCAACTT 59.919 52.381 0.00 0.00 0.00 2.66
1977 2033 1.486726 CCTCTAGCCTACCCCAACTTG 59.513 57.143 0.00 0.00 0.00 3.16
1978 2034 2.188817 CTCTAGCCTACCCCAACTTGT 58.811 52.381 0.00 0.00 0.00 3.16
1979 2035 2.572104 CTCTAGCCTACCCCAACTTGTT 59.428 50.000 0.00 0.00 0.00 2.83
1980 2036 2.983898 TCTAGCCTACCCCAACTTGTTT 59.016 45.455 0.00 0.00 0.00 2.83
1981 2037 1.995376 AGCCTACCCCAACTTGTTTG 58.005 50.000 0.00 0.00 34.63 2.93
1992 2048 3.977427 CAACTTGTTTGGGACTAAAGGC 58.023 45.455 0.00 0.00 0.00 4.35
1993 2049 3.595190 ACTTGTTTGGGACTAAAGGCT 57.405 42.857 0.00 0.00 0.00 4.58
1994 2050 3.910989 ACTTGTTTGGGACTAAAGGCTT 58.089 40.909 0.00 0.00 0.00 4.35
1995 2051 4.286707 ACTTGTTTGGGACTAAAGGCTTT 58.713 39.130 17.76 17.76 0.00 3.51
1996 2052 4.099419 ACTTGTTTGGGACTAAAGGCTTTG 59.901 41.667 22.32 13.97 0.00 2.77
1997 2053 3.637769 TGTTTGGGACTAAAGGCTTTGT 58.362 40.909 22.32 16.86 0.00 2.83
1998 2054 4.027437 TGTTTGGGACTAAAGGCTTTGTT 58.973 39.130 22.32 8.73 0.00 2.83
1999 2055 4.142049 TGTTTGGGACTAAAGGCTTTGTTG 60.142 41.667 22.32 13.85 0.00 3.33
2000 2056 3.306472 TGGGACTAAAGGCTTTGTTGT 57.694 42.857 22.32 16.69 0.00 3.32
2001 2057 3.637769 TGGGACTAAAGGCTTTGTTGTT 58.362 40.909 22.32 1.84 0.00 2.83
2002 2058 3.383185 TGGGACTAAAGGCTTTGTTGTTG 59.617 43.478 22.32 7.79 0.00 3.33
2003 2059 3.383505 GGGACTAAAGGCTTTGTTGTTGT 59.616 43.478 22.32 10.58 0.00 3.32
2004 2060 4.142026 GGGACTAAAGGCTTTGTTGTTGTT 60.142 41.667 22.32 0.00 0.00 2.83
2005 2061 4.803613 GGACTAAAGGCTTTGTTGTTGTTG 59.196 41.667 22.32 0.00 0.00 3.33
2006 2062 5.400066 ACTAAAGGCTTTGTTGTTGTTGT 57.600 34.783 22.32 0.00 0.00 3.32
2007 2063 5.789521 ACTAAAGGCTTTGTTGTTGTTGTT 58.210 33.333 22.32 0.00 0.00 2.83
2008 2064 5.637387 ACTAAAGGCTTTGTTGTTGTTGTTG 59.363 36.000 22.32 0.00 0.00 3.33
2009 2065 3.676291 AGGCTTTGTTGTTGTTGTTGT 57.324 38.095 0.00 0.00 0.00 3.32
2010 2066 4.001618 AGGCTTTGTTGTTGTTGTTGTT 57.998 36.364 0.00 0.00 0.00 2.83
2011 2067 3.745458 AGGCTTTGTTGTTGTTGTTGTTG 59.255 39.130 0.00 0.00 0.00 3.33
2012 2068 3.496507 GGCTTTGTTGTTGTTGTTGTTGT 59.503 39.130 0.00 0.00 0.00 3.32
2037 2093 5.404968 TGAAATGCTAATTTTTGAAGTGCCG 59.595 36.000 0.00 0.00 36.10 5.69
2084 2140 6.631763 TGCCCATATCAGATATCTGTCAAT 57.368 37.500 27.80 18.28 44.12 2.57
2085 2141 6.647229 TGCCCATATCAGATATCTGTCAATC 58.353 40.000 27.80 14.61 44.12 2.67
2087 2143 7.108194 GCCCATATCAGATATCTGTCAATCAA 58.892 38.462 27.80 10.90 44.12 2.57
2088 2144 7.609146 GCCCATATCAGATATCTGTCAATCAAA 59.391 37.037 27.80 10.22 44.12 2.69
2089 2145 9.682465 CCCATATCAGATATCTGTCAATCAAAT 57.318 33.333 27.80 15.83 44.12 2.32
2160 2216 4.379918 GGAATGGTCAACTTTAGCAAGCTC 60.380 45.833 0.00 0.00 32.57 4.09
2184 2240 6.017934 TCGATATTCCACTAGCATTTTTCAGC 60.018 38.462 0.00 0.00 0.00 4.26
2208 2264 3.243334 TGCAGTGAATTTGCATTTCGTCA 60.243 39.130 0.00 0.00 45.89 4.35
2219 2275 4.657055 TGCATTTCGTCACCAATTTATCG 58.343 39.130 0.00 0.00 0.00 2.92
2220 2276 3.482110 GCATTTCGTCACCAATTTATCGC 59.518 43.478 0.00 0.00 0.00 4.58
2226 2282 4.055360 CGTCACCAATTTATCGCATCCTA 58.945 43.478 0.00 0.00 0.00 2.94
2236 2292 6.861065 TTTATCGCATCCTATCTTCAAACC 57.139 37.500 0.00 0.00 0.00 3.27
2238 2294 4.422073 TCGCATCCTATCTTCAAACCAT 57.578 40.909 0.00 0.00 0.00 3.55
2246 2302 5.242838 TCCTATCTTCAAACCATTTTTGCGT 59.757 36.000 0.00 0.00 0.00 5.24
2247 2303 6.431543 TCCTATCTTCAAACCATTTTTGCGTA 59.568 34.615 0.00 0.00 0.00 4.42
2248 2304 7.040340 TCCTATCTTCAAACCATTTTTGCGTAA 60.040 33.333 0.00 0.00 0.00 3.18
2339 2395 5.140454 ACTTTGTGCCCTGATTTTCTAGTT 58.860 37.500 0.00 0.00 0.00 2.24
2343 2399 4.261801 GTGCCCTGATTTTCTAGTTGCTA 58.738 43.478 0.00 0.00 0.00 3.49
2432 2488 3.556843 GCTTGAGTCCTCTTCAGCTTTCT 60.557 47.826 0.00 0.00 0.00 2.52
2533 2589 3.573538 TGCAAATGTCAATGTAACAGGCT 59.426 39.130 0.00 0.00 0.00 4.58
2683 2739 4.950475 TCCGATCCTCTACATGGATATGAC 59.050 45.833 0.00 0.00 43.68 3.06
2698 2754 2.021068 ATGACGAGGAGACCATGCGG 62.021 60.000 0.00 0.00 38.77 5.69
2749 2805 0.179018 GTTGGACTGCTGAGTTGGGT 60.179 55.000 0.00 0.00 30.16 4.51
2778 2834 1.211457 AGCACTGGAGGAGGCATTTAG 59.789 52.381 0.00 0.00 0.00 1.85
2941 3003 3.843027 AGGGATTGAAGTGTCTGATCAGT 59.157 43.478 21.92 2.29 0.00 3.41
3097 3161 7.824779 ACCTCGGCTCCTTTTGAATATAATATC 59.175 37.037 0.00 0.00 0.00 1.63
3137 3237 5.758296 TGTTTACCAGTTTGTGTGATCTCTC 59.242 40.000 0.00 0.00 0.00 3.20
3150 3250 5.146010 GTGATCTCTCATATCACCCTTCC 57.854 47.826 5.14 0.00 44.87 3.46
3151 3251 4.590647 GTGATCTCTCATATCACCCTTCCA 59.409 45.833 5.14 0.00 44.87 3.53
3152 3252 4.590647 TGATCTCTCATATCACCCTTCCAC 59.409 45.833 0.00 0.00 0.00 4.02
3220 3454 7.231925 TGAACTATCAACTCTAGTGTGGTTACA 59.768 37.037 0.00 0.00 30.99 2.41
3247 3481 8.419442 AGTATACTTAAATTTGTACTCCCTCCG 58.581 37.037 0.00 0.00 0.00 4.63
3248 3482 5.494390 ACTTAAATTTGTACTCCCTCCGT 57.506 39.130 0.00 0.00 0.00 4.69
3249 3483 5.872963 ACTTAAATTTGTACTCCCTCCGTT 58.127 37.500 0.00 0.00 0.00 4.44
3250 3484 5.936372 ACTTAAATTTGTACTCCCTCCGTTC 59.064 40.000 0.00 0.00 0.00 3.95
3251 3485 3.345508 AATTTGTACTCCCTCCGTTCC 57.654 47.619 0.00 0.00 0.00 3.62
3252 3486 2.019807 TTTGTACTCCCTCCGTTCCT 57.980 50.000 0.00 0.00 0.00 3.36
3253 3487 2.905415 TTGTACTCCCTCCGTTCCTA 57.095 50.000 0.00 0.00 0.00 2.94
3254 3488 2.905415 TGTACTCCCTCCGTTCCTAA 57.095 50.000 0.00 0.00 0.00 2.69
3255 3489 3.173953 TGTACTCCCTCCGTTCCTAAA 57.826 47.619 0.00 0.00 0.00 1.85
3256 3490 3.716431 TGTACTCCCTCCGTTCCTAAAT 58.284 45.455 0.00 0.00 0.00 1.40
3257 3491 4.870636 TGTACTCCCTCCGTTCCTAAATA 58.129 43.478 0.00 0.00 0.00 1.40
3258 3492 5.461327 TGTACTCCCTCCGTTCCTAAATAT 58.539 41.667 0.00 0.00 0.00 1.28
3259 3493 5.901276 TGTACTCCCTCCGTTCCTAAATATT 59.099 40.000 0.00 0.00 0.00 1.28
3260 3494 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
3261 3495 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
3262 3496 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
3263 3497 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
3264 3498 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
3265 3499 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
3266 3500 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
3267 3501 7.201705 CCCTCCGTTCCTAAATATTTGTCTTTC 60.202 40.741 11.05 0.00 0.00 2.62
3268 3502 7.553044 CCTCCGTTCCTAAATATTTGTCTTTCT 59.447 37.037 11.05 0.00 0.00 2.52
3269 3503 9.595823 CTCCGTTCCTAAATATTTGTCTTTCTA 57.404 33.333 11.05 0.00 0.00 2.10
3270 3504 9.595823 TCCGTTCCTAAATATTTGTCTTTCTAG 57.404 33.333 11.05 0.00 0.00 2.43
3271 3505 9.595823 CCGTTCCTAAATATTTGTCTTTCTAGA 57.404 33.333 11.05 0.00 0.00 2.43
3284 3518 8.964476 TTGTCTTTCTAGAGATTTCAACAAGT 57.036 30.769 0.00 0.00 0.00 3.16
3285 3519 8.370493 TGTCTTTCTAGAGATTTCAACAAGTG 57.630 34.615 0.00 0.00 0.00 3.16
3286 3520 8.204160 TGTCTTTCTAGAGATTTCAACAAGTGA 58.796 33.333 0.00 0.00 0.00 3.41
3287 3521 8.491950 GTCTTTCTAGAGATTTCAACAAGTGAC 58.508 37.037 0.00 0.00 35.39 3.67
3288 3522 8.424918 TCTTTCTAGAGATTTCAACAAGTGACT 58.575 33.333 0.00 0.00 35.39 3.41
3289 3523 9.698309 CTTTCTAGAGATTTCAACAAGTGACTA 57.302 33.333 0.00 0.00 35.39 2.59
3290 3524 9.477484 TTTCTAGAGATTTCAACAAGTGACTAC 57.523 33.333 0.00 0.00 35.39 2.73
3291 3525 8.178313 TCTAGAGATTTCAACAAGTGACTACA 57.822 34.615 0.00 0.00 35.39 2.74
3292 3526 8.807118 TCTAGAGATTTCAACAAGTGACTACAT 58.193 33.333 0.00 0.00 35.39 2.29
3294 3528 8.764524 AGAGATTTCAACAAGTGACTACATAC 57.235 34.615 0.00 0.00 35.39 2.39
3295 3529 7.542477 AGAGATTTCAACAAGTGACTACATACG 59.458 37.037 0.00 0.00 35.39 3.06
3296 3530 6.590292 AGATTTCAACAAGTGACTACATACGG 59.410 38.462 0.00 0.00 35.39 4.02
3297 3531 5.456548 TTCAACAAGTGACTACATACGGA 57.543 39.130 0.00 0.00 35.39 4.69
3298 3532 5.055642 TCAACAAGTGACTACATACGGAG 57.944 43.478 0.00 0.00 0.00 4.63
3299 3533 3.505464 ACAAGTGACTACATACGGAGC 57.495 47.619 0.00 0.00 0.00 4.70
3300 3534 2.823747 ACAAGTGACTACATACGGAGCA 59.176 45.455 0.00 0.00 0.00 4.26
3301 3535 3.257375 ACAAGTGACTACATACGGAGCAA 59.743 43.478 0.00 0.00 0.00 3.91
3302 3536 4.242475 CAAGTGACTACATACGGAGCAAA 58.758 43.478 0.00 0.00 0.00 3.68
3303 3537 4.530710 AGTGACTACATACGGAGCAAAA 57.469 40.909 0.00 0.00 0.00 2.44
3304 3538 5.086104 AGTGACTACATACGGAGCAAAAT 57.914 39.130 0.00 0.00 0.00 1.82
3305 3539 4.870426 AGTGACTACATACGGAGCAAAATG 59.130 41.667 0.00 0.00 0.00 2.32
3306 3540 4.868171 GTGACTACATACGGAGCAAAATGA 59.132 41.667 0.00 0.00 0.00 2.57
3307 3541 5.005779 GTGACTACATACGGAGCAAAATGAG 59.994 44.000 0.00 0.00 0.00 2.90
3308 3542 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
3309 3543 4.870426 ACTACATACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
3310 3544 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
3311 3545 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
3312 3546 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
3313 3547 5.065218 ACATACGGAGCAAAATGAGTGAATC 59.935 40.000 0.00 0.00 0.00 2.52
3314 3548 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
3315 3549 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
3316 3550 5.431765 ACGGAGCAAAATGAGTGAATCTAT 58.568 37.500 0.00 0.00 0.00 1.98
3317 3551 6.582636 ACGGAGCAAAATGAGTGAATCTATA 58.417 36.000 0.00 0.00 0.00 1.31
3318 3552 6.480320 ACGGAGCAAAATGAGTGAATCTATAC 59.520 38.462 0.00 0.00 0.00 1.47
3319 3553 6.703607 CGGAGCAAAATGAGTGAATCTATACT 59.296 38.462 0.00 0.00 0.00 2.12
3320 3554 7.095857 CGGAGCAAAATGAGTGAATCTATACTC 60.096 40.741 0.00 0.00 42.77 2.59
3321 3555 7.930865 GGAGCAAAATGAGTGAATCTATACTCT 59.069 37.037 0.00 0.00 42.86 3.24
3322 3556 9.973450 GAGCAAAATGAGTGAATCTATACTCTA 57.027 33.333 0.00 0.00 42.86 2.43
3356 3590 9.682465 TCTATATACATCAGTATGTGGTAGTCC 57.318 37.037 1.34 0.00 45.99 3.85
3357 3591 9.462606 CTATATACATCAGTATGTGGTAGTCCA 57.537 37.037 1.34 0.00 45.99 4.02
3358 3592 8.901472 ATATACATCAGTATGTGGTAGTCCAT 57.099 34.615 1.34 0.00 45.99 3.41
3359 3593 5.957771 ACATCAGTATGTGGTAGTCCATT 57.042 39.130 0.00 0.00 44.79 3.16
3360 3594 6.313519 ACATCAGTATGTGGTAGTCCATTT 57.686 37.500 0.00 0.00 44.79 2.32
3361 3595 6.115446 ACATCAGTATGTGGTAGTCCATTTG 58.885 40.000 0.00 0.00 44.79 2.32
3362 3596 6.070251 ACATCAGTATGTGGTAGTCCATTTGA 60.070 38.462 0.00 0.00 44.79 2.69
3363 3597 6.367374 TCAGTATGTGGTAGTCCATTTGAA 57.633 37.500 0.00 0.00 46.20 2.69
3364 3598 6.774673 TCAGTATGTGGTAGTCCATTTGAAA 58.225 36.000 0.00 0.00 46.20 2.69
3365 3599 7.402054 TCAGTATGTGGTAGTCCATTTGAAAT 58.598 34.615 0.00 0.00 46.20 2.17
3366 3600 7.552687 TCAGTATGTGGTAGTCCATTTGAAATC 59.447 37.037 0.00 0.00 46.20 2.17
3367 3601 7.554118 CAGTATGTGGTAGTCCATTTGAAATCT 59.446 37.037 0.00 0.00 46.20 2.40
3368 3602 7.770897 AGTATGTGGTAGTCCATTTGAAATCTC 59.229 37.037 0.00 0.00 46.20 2.75
3369 3603 6.126863 TGTGGTAGTCCATTTGAAATCTCT 57.873 37.500 0.00 0.00 46.20 3.10
3370 3604 7.252612 TGTGGTAGTCCATTTGAAATCTCTA 57.747 36.000 0.00 0.00 46.20 2.43
3371 3605 7.685481 TGTGGTAGTCCATTTGAAATCTCTAA 58.315 34.615 0.00 0.00 46.20 2.10
3372 3606 8.160765 TGTGGTAGTCCATTTGAAATCTCTAAA 58.839 33.333 0.00 0.00 46.20 1.85
3373 3607 9.010029 GTGGTAGTCCATTTGAAATCTCTAAAA 57.990 33.333 0.00 0.00 46.20 1.52
3374 3608 9.581289 TGGTAGTCCATTTGAAATCTCTAAAAA 57.419 29.630 0.00 0.00 39.03 1.94
3378 3612 9.354673 AGTCCATTTGAAATCTCTAAAAAGACA 57.645 29.630 0.00 0.00 0.00 3.41
3379 3613 9.965824 GTCCATTTGAAATCTCTAAAAAGACAA 57.034 29.630 0.00 0.00 0.00 3.18
3397 3631 8.539117 AAAGACAAATATTTAGGAATGGAGGG 57.461 34.615 0.00 0.00 0.00 4.30
3398 3632 7.226059 AGACAAATATTTAGGAATGGAGGGT 57.774 36.000 0.00 0.00 0.00 4.34
3399 3633 7.062957 AGACAAATATTTAGGAATGGAGGGTG 58.937 38.462 0.00 0.00 0.00 4.61
3481 3727 8.567948 TGAGCTTTTAGAGTTTTGTTAGAATGG 58.432 33.333 0.00 0.00 0.00 3.16
3517 3763 8.528044 ACAAATTGTAAGAAGGTTTTACTCCA 57.472 30.769 0.00 0.00 33.29 3.86
3531 3777 6.016276 GGTTTTACTCCAGACAACATCAATGT 60.016 38.462 0.00 0.00 44.20 2.71
3537 3783 8.268850 ACTCCAGACAACATCAATGTAAATAC 57.731 34.615 0.00 0.00 40.80 1.89
3720 3976 1.821216 TCAGGACGAAAATCCAAGCC 58.179 50.000 0.00 0.00 41.73 4.35
3802 4058 2.356125 CCACCTCGTTCATCCAGGAAAT 60.356 50.000 0.00 0.00 0.00 2.17
3949 4205 1.378762 CGGTCCCAATTGACACCCT 59.621 57.895 7.12 0.00 36.97 4.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
120 121 1.195115 AGCCCTTGTCGCTCAGAATA 58.805 50.000 0.00 0.00 0.00 1.75
137 138 1.078759 CGTGTGCTGTGGCTAGTAGC 61.079 60.000 14.09 14.09 41.46 3.58
139 140 1.080093 GCGTGTGCTGTGGCTAGTA 60.080 57.895 0.00 0.00 39.59 1.82
142 143 1.960763 CTTGCGTGTGCTGTGGCTA 60.961 57.895 0.00 0.00 43.34 3.93
145 146 0.880278 AGTACTTGCGTGTGCTGTGG 60.880 55.000 0.00 0.00 43.34 4.17
158 159 2.225293 TGGCTCCTCTGTGGTAGTACTT 60.225 50.000 0.00 0.00 37.07 2.24
161 162 2.292257 ACATGGCTCCTCTGTGGTAGTA 60.292 50.000 0.00 0.00 37.07 1.82
162 163 1.198713 CATGGCTCCTCTGTGGTAGT 58.801 55.000 0.00 0.00 37.07 2.73
163 164 1.198713 ACATGGCTCCTCTGTGGTAG 58.801 55.000 0.00 0.00 37.07 3.18
194 195 7.865706 ACTTAGTAGGTTTGATTAGGCATTG 57.134 36.000 0.00 0.00 0.00 2.82
240 241 1.225855 TTCCGTTACTGTTGCTGCTG 58.774 50.000 0.00 0.00 0.00 4.41
248 249 7.976734 TCAATTTTGTCAATTTTCCGTTACTGT 59.023 29.630 0.00 0.00 0.00 3.55
252 253 7.194278 TCGTCAATTTTGTCAATTTTCCGTTA 58.806 30.769 0.00 0.00 0.00 3.18
254 255 5.583495 TCGTCAATTTTGTCAATTTTCCGT 58.417 33.333 0.00 0.00 0.00 4.69
256 257 5.107491 GGCTCGTCAATTTTGTCAATTTTCC 60.107 40.000 0.00 0.00 0.00 3.13
257 258 5.691754 AGGCTCGTCAATTTTGTCAATTTTC 59.308 36.000 0.00 0.00 0.00 2.29
258 259 5.600696 AGGCTCGTCAATTTTGTCAATTTT 58.399 33.333 0.00 0.00 0.00 1.82
261 262 4.321230 GGAAGGCTCGTCAATTTTGTCAAT 60.321 41.667 0.00 0.00 0.00 2.57
262 263 3.004315 GGAAGGCTCGTCAATTTTGTCAA 59.996 43.478 0.00 0.00 0.00 3.18
263 264 2.552315 GGAAGGCTCGTCAATTTTGTCA 59.448 45.455 0.00 0.00 0.00 3.58
264 265 2.552315 TGGAAGGCTCGTCAATTTTGTC 59.448 45.455 0.00 0.00 0.00 3.18
266 267 2.351738 GGTGGAAGGCTCGTCAATTTTG 60.352 50.000 0.00 0.00 0.00 2.44
271 278 2.342279 CGGTGGAAGGCTCGTCAA 59.658 61.111 0.00 0.00 0.00 3.18
318 325 0.458669 TCCTCGACGGCTTCCATAAC 59.541 55.000 0.00 0.00 0.00 1.89
344 351 1.375396 TTCGCCATGGACTCGTTGG 60.375 57.895 18.40 0.00 0.00 3.77
468 475 5.336451 GGATGGGTTTGTTTACTTGGATGAC 60.336 44.000 0.00 0.00 0.00 3.06
471 478 5.010708 AGGATGGGTTTGTTTACTTGGAT 57.989 39.130 0.00 0.00 0.00 3.41
775 785 2.203640 TCACGGACTGGCAGACCT 60.204 61.111 28.53 15.79 36.63 3.85
800 810 0.106469 GGATCCTCTTTTGGCCCCTC 60.106 60.000 3.84 0.00 0.00 4.30
809 819 2.160721 TGTAGCCTCGGATCCTCTTT 57.839 50.000 10.75 0.00 0.00 2.52
820 830 1.227999 TTGCACGTGCTTGTAGCCTC 61.228 55.000 37.59 8.73 41.51 4.70
1151 1177 2.284699 AACCTGGGGAGTCGAGGG 60.285 66.667 0.00 0.00 44.56 4.30
1152 1178 2.359967 GGAACCTGGGGAGTCGAGG 61.360 68.421 0.00 0.00 45.59 4.63
1153 1179 1.305381 AGGAACCTGGGGAGTCGAG 60.305 63.158 0.00 0.00 0.00 4.04
1154 1180 1.305046 GAGGAACCTGGGGAGTCGA 60.305 63.158 0.00 0.00 0.00 4.20
1155 1181 1.305381 AGAGGAACCTGGGGAGTCG 60.305 63.158 0.00 0.00 0.00 4.18
1156 1182 0.252284 TCAGAGGAACCTGGGGAGTC 60.252 60.000 0.00 0.00 34.99 3.36
1157 1183 0.193574 TTCAGAGGAACCTGGGGAGT 59.806 55.000 0.00 0.00 34.99 3.85
1158 1184 0.615850 GTTCAGAGGAACCTGGGGAG 59.384 60.000 0.00 0.00 46.18 4.30
1205 1231 4.219288 GCATCCACAGAAAAAGGAATCAGT 59.781 41.667 0.00 0.00 34.62 3.41
1300 1331 2.546795 GGGCAACTCACTCATATCCTCG 60.547 54.545 0.00 0.00 0.00 4.63
1336 1367 3.309954 GCATCCAAGAACGAACCTCATAC 59.690 47.826 0.00 0.00 0.00 2.39
1337 1368 3.055458 TGCATCCAAGAACGAACCTCATA 60.055 43.478 0.00 0.00 0.00 2.15
1338 1369 2.290260 TGCATCCAAGAACGAACCTCAT 60.290 45.455 0.00 0.00 0.00 2.90
1339 1370 1.071542 TGCATCCAAGAACGAACCTCA 59.928 47.619 0.00 0.00 0.00 3.86
1340 1371 1.734465 CTGCATCCAAGAACGAACCTC 59.266 52.381 0.00 0.00 0.00 3.85
1341 1372 1.813513 CTGCATCCAAGAACGAACCT 58.186 50.000 0.00 0.00 0.00 3.50
1342 1373 0.169009 GCTGCATCCAAGAACGAACC 59.831 55.000 0.00 0.00 0.00 3.62
1343 1374 0.874390 TGCTGCATCCAAGAACGAAC 59.126 50.000 0.00 0.00 0.00 3.95
1344 1375 1.159285 CTGCTGCATCCAAGAACGAA 58.841 50.000 1.31 0.00 0.00 3.85
1345 1376 0.035317 ACTGCTGCATCCAAGAACGA 59.965 50.000 1.31 0.00 0.00 3.85
1346 1377 0.877071 AACTGCTGCATCCAAGAACG 59.123 50.000 1.31 0.00 0.00 3.95
1369 1411 2.672874 TCGAAGCACTGATCAAAATCCG 59.327 45.455 0.00 0.00 0.00 4.18
1381 1423 4.900635 AAGACACAAAAATCGAAGCACT 57.099 36.364 0.00 0.00 0.00 4.40
1498 1542 0.389948 ACCCTTTTAGCTCGCGACAG 60.390 55.000 3.71 0.00 0.00 3.51
1568 1617 6.707161 GTGGGTTAGAATGTACAGTACACAAA 59.293 38.462 15.89 5.36 42.23 2.83
1569 1618 6.042322 AGTGGGTTAGAATGTACAGTACACAA 59.958 38.462 15.89 5.36 42.23 3.33
1570 1619 5.541101 AGTGGGTTAGAATGTACAGTACACA 59.459 40.000 15.89 4.11 42.23 3.72
1571 1620 5.867716 CAGTGGGTTAGAATGTACAGTACAC 59.132 44.000 15.89 4.46 42.23 2.90
1572 1621 5.776208 TCAGTGGGTTAGAATGTACAGTACA 59.224 40.000 15.90 15.90 43.80 2.90
1573 1622 6.276832 TCAGTGGGTTAGAATGTACAGTAC 57.723 41.667 0.33 3.49 0.00 2.73
1574 1623 8.598202 TTATCAGTGGGTTAGAATGTACAGTA 57.402 34.615 0.33 0.00 0.00 2.74
1575 1624 7.364762 CCTTATCAGTGGGTTAGAATGTACAGT 60.365 40.741 0.33 0.00 0.00 3.55
1576 1625 6.986817 CCTTATCAGTGGGTTAGAATGTACAG 59.013 42.308 0.33 0.00 0.00 2.74
1577 1626 6.631766 GCCTTATCAGTGGGTTAGAATGTACA 60.632 42.308 0.00 0.00 0.00 2.90
1578 1627 5.758784 GCCTTATCAGTGGGTTAGAATGTAC 59.241 44.000 0.00 0.00 0.00 2.90
1579 1628 5.665812 AGCCTTATCAGTGGGTTAGAATGTA 59.334 40.000 0.00 0.00 0.00 2.29
1580 1629 4.475016 AGCCTTATCAGTGGGTTAGAATGT 59.525 41.667 0.00 0.00 0.00 2.71
1581 1630 5.041191 AGCCTTATCAGTGGGTTAGAATG 57.959 43.478 0.00 0.00 0.00 2.67
1582 1631 5.044846 ACAAGCCTTATCAGTGGGTTAGAAT 60.045 40.000 0.00 0.00 41.44 2.40
1583 1632 4.288626 ACAAGCCTTATCAGTGGGTTAGAA 59.711 41.667 0.00 0.00 41.44 2.10
1584 1633 3.844211 ACAAGCCTTATCAGTGGGTTAGA 59.156 43.478 0.00 0.00 41.44 2.10
1585 1634 4.192317 GACAAGCCTTATCAGTGGGTTAG 58.808 47.826 0.00 0.00 41.44 2.34
1586 1635 3.369052 CGACAAGCCTTATCAGTGGGTTA 60.369 47.826 0.00 0.00 41.44 2.85
1587 1636 2.615493 CGACAAGCCTTATCAGTGGGTT 60.615 50.000 0.00 0.00 43.79 4.11
1588 1637 1.066143 CGACAAGCCTTATCAGTGGGT 60.066 52.381 0.00 0.00 35.34 4.51
1589 1638 1.207089 TCGACAAGCCTTATCAGTGGG 59.793 52.381 0.00 0.00 0.00 4.61
1590 1639 2.271800 GTCGACAAGCCTTATCAGTGG 58.728 52.381 11.55 0.00 0.00 4.00
1591 1640 2.271800 GGTCGACAAGCCTTATCAGTG 58.728 52.381 18.91 0.00 0.00 3.66
1592 1641 1.207329 GGGTCGACAAGCCTTATCAGT 59.793 52.381 18.91 0.00 42.62 3.41
1593 1642 1.941325 GGGTCGACAAGCCTTATCAG 58.059 55.000 18.91 0.00 42.62 2.90
1632 1688 1.364626 GATCTTCAGCCTGCACACCG 61.365 60.000 0.00 0.00 0.00 4.94
1634 1690 1.367659 GAGATCTTCAGCCTGCACAC 58.632 55.000 0.00 0.00 0.00 3.82
1683 1739 2.035626 GGGCCAGCCTTTACAGCA 59.964 61.111 4.39 0.00 36.10 4.41
1684 1740 2.755876 GGGGCCAGCCTTTACAGC 60.756 66.667 4.39 0.00 36.10 4.40
1709 1765 5.339008 AGACTGCGAATATCAACTAACCA 57.661 39.130 0.00 0.00 0.00 3.67
1756 1812 6.349280 GGCTTGTAATTACACAAAGCTGATGA 60.349 38.462 27.56 8.64 37.93 2.92
1877 1933 1.388065 CGCACCCCTGTCCAAAAACA 61.388 55.000 0.00 0.00 0.00 2.83
1878 1934 1.362355 CGCACCCCTGTCCAAAAAC 59.638 57.895 0.00 0.00 0.00 2.43
1879 1935 1.076632 ACGCACCCCTGTCCAAAAA 60.077 52.632 0.00 0.00 0.00 1.94
1880 1936 1.826054 CACGCACCCCTGTCCAAAA 60.826 57.895 0.00 0.00 0.00 2.44
1881 1937 2.203280 CACGCACCCCTGTCCAAA 60.203 61.111 0.00 0.00 0.00 3.28
1882 1938 4.263572 CCACGCACCCCTGTCCAA 62.264 66.667 0.00 0.00 0.00 3.53
1884 1940 3.901797 CTTCCACGCACCCCTGTCC 62.902 68.421 0.00 0.00 0.00 4.02
1885 1941 2.358737 CTTCCACGCACCCCTGTC 60.359 66.667 0.00 0.00 0.00 3.51
1886 1942 4.643387 GCTTCCACGCACCCCTGT 62.643 66.667 0.00 0.00 0.00 4.00
1887 1943 3.850098 AAGCTTCCACGCACCCCTG 62.850 63.158 0.00 0.00 0.00 4.45
1888 1944 3.570212 AAGCTTCCACGCACCCCT 61.570 61.111 0.00 0.00 0.00 4.79
1889 1945 3.365265 CAAGCTTCCACGCACCCC 61.365 66.667 0.00 0.00 0.00 4.95
1890 1946 4.043200 GCAAGCTTCCACGCACCC 62.043 66.667 0.00 0.00 0.00 4.61
1891 1947 1.026718 ATAGCAAGCTTCCACGCACC 61.027 55.000 8.96 0.00 0.00 5.01
1892 1948 0.375106 GATAGCAAGCTTCCACGCAC 59.625 55.000 8.96 0.00 0.00 5.34
1893 1949 0.744414 GGATAGCAAGCTTCCACGCA 60.744 55.000 8.96 0.00 0.00 5.24
1894 1950 0.744414 TGGATAGCAAGCTTCCACGC 60.744 55.000 16.61 0.00 34.65 5.34
1895 1951 1.600957 CATGGATAGCAAGCTTCCACG 59.399 52.381 20.41 13.24 42.09 4.94
1896 1952 2.357009 CACATGGATAGCAAGCTTCCAC 59.643 50.000 20.41 0.00 42.09 4.02
1897 1953 2.646930 CACATGGATAGCAAGCTTCCA 58.353 47.619 20.33 20.33 43.37 3.53
1898 1954 1.336125 GCACATGGATAGCAAGCTTCC 59.664 52.381 0.00 7.95 0.00 3.46
1899 1955 1.336125 GGCACATGGATAGCAAGCTTC 59.664 52.381 0.00 0.00 0.00 3.86
1900 1956 1.341285 TGGCACATGGATAGCAAGCTT 60.341 47.619 0.00 0.00 0.00 3.74
1901 1957 0.256752 TGGCACATGGATAGCAAGCT 59.743 50.000 0.00 0.00 0.00 3.74
1902 1958 0.666913 CTGGCACATGGATAGCAAGC 59.333 55.000 0.00 0.00 38.20 4.01
1903 1959 2.219458 CTCTGGCACATGGATAGCAAG 58.781 52.381 0.00 0.00 38.20 4.01
1904 1960 1.748244 GCTCTGGCACATGGATAGCAA 60.748 52.381 0.00 0.00 38.20 3.91
1905 1961 0.179037 GCTCTGGCACATGGATAGCA 60.179 55.000 0.00 0.00 38.20 3.49
1906 1962 0.888285 GGCTCTGGCACATGGATAGC 60.888 60.000 0.00 0.00 38.20 2.97
1907 1963 0.471191 TGGCTCTGGCACATGGATAG 59.529 55.000 0.00 0.00 38.20 2.08
1908 1964 1.142936 ATGGCTCTGGCACATGGATA 58.857 50.000 0.00 0.00 41.84 2.59
1909 1965 0.467474 CATGGCTCTGGCACATGGAT 60.467 55.000 7.68 0.00 41.84 3.41
1910 1966 1.077285 CATGGCTCTGGCACATGGA 60.077 57.895 7.68 0.00 41.84 3.41
1911 1967 1.077285 TCATGGCTCTGGCACATGG 60.077 57.895 13.76 0.00 41.84 3.66
1912 1968 0.393944 ACTCATGGCTCTGGCACATG 60.394 55.000 8.97 8.97 41.84 3.21
1913 1969 0.330604 AACTCATGGCTCTGGCACAT 59.669 50.000 0.00 0.00 41.84 3.21
1914 1970 0.607217 CAACTCATGGCTCTGGCACA 60.607 55.000 0.00 0.00 41.84 4.57
1915 1971 1.310933 CCAACTCATGGCTCTGGCAC 61.311 60.000 0.00 0.00 43.80 5.01
1916 1972 1.001764 CCAACTCATGGCTCTGGCA 60.002 57.895 0.00 0.00 43.80 4.92
1917 1973 3.915575 CCAACTCATGGCTCTGGC 58.084 61.111 0.00 0.00 43.80 4.85
1925 1981 2.625737 AGATCTCGCAACCAACTCATG 58.374 47.619 0.00 0.00 0.00 3.07
1926 1982 3.340814 AAGATCTCGCAACCAACTCAT 57.659 42.857 0.00 0.00 0.00 2.90
1927 1983 2.839486 AAGATCTCGCAACCAACTCA 57.161 45.000 0.00 0.00 0.00 3.41
1928 1984 3.557595 CCATAAGATCTCGCAACCAACTC 59.442 47.826 0.00 0.00 0.00 3.01
1929 1985 3.535561 CCATAAGATCTCGCAACCAACT 58.464 45.455 0.00 0.00 0.00 3.16
1930 1986 2.614057 CCCATAAGATCTCGCAACCAAC 59.386 50.000 0.00 0.00 0.00 3.77
1931 1987 2.238646 ACCCATAAGATCTCGCAACCAA 59.761 45.455 0.00 0.00 0.00 3.67
1932 1988 1.837439 ACCCATAAGATCTCGCAACCA 59.163 47.619 0.00 0.00 0.00 3.67
1933 1989 2.622064 ACCCATAAGATCTCGCAACC 57.378 50.000 0.00 0.00 0.00 3.77
1934 1990 3.938963 TGAAACCCATAAGATCTCGCAAC 59.061 43.478 0.00 0.00 0.00 4.17
1935 1991 3.938963 GTGAAACCCATAAGATCTCGCAA 59.061 43.478 0.00 0.00 0.00 4.85
1936 1992 3.531538 GTGAAACCCATAAGATCTCGCA 58.468 45.455 0.00 0.00 0.00 5.10
1951 2007 1.485480 GGGGTAGGCTAGAGGTGAAAC 59.515 57.143 0.00 0.00 0.00 2.78
1952 2008 1.079825 TGGGGTAGGCTAGAGGTGAAA 59.920 52.381 0.00 0.00 0.00 2.69
1953 2009 0.714180 TGGGGTAGGCTAGAGGTGAA 59.286 55.000 0.00 0.00 0.00 3.18
1954 2010 0.714180 TTGGGGTAGGCTAGAGGTGA 59.286 55.000 0.00 0.00 0.00 4.02
1955 2011 0.831307 GTTGGGGTAGGCTAGAGGTG 59.169 60.000 0.00 0.00 0.00 4.00
1956 2012 0.717196 AGTTGGGGTAGGCTAGAGGT 59.283 55.000 0.00 0.00 0.00 3.85
1957 2013 1.486726 CAAGTTGGGGTAGGCTAGAGG 59.513 57.143 0.00 0.00 0.00 3.69
1958 2014 2.188817 ACAAGTTGGGGTAGGCTAGAG 58.811 52.381 7.96 0.00 0.00 2.43
1959 2015 2.337359 ACAAGTTGGGGTAGGCTAGA 57.663 50.000 7.96 0.00 0.00 2.43
1960 2016 3.081804 CAAACAAGTTGGGGTAGGCTAG 58.918 50.000 7.96 0.00 33.18 3.42
1961 2017 3.149005 CAAACAAGTTGGGGTAGGCTA 57.851 47.619 7.96 0.00 33.18 3.93
1962 2018 1.995376 CAAACAAGTTGGGGTAGGCT 58.005 50.000 7.96 0.00 33.18 4.58
1971 2027 3.636764 AGCCTTTAGTCCCAAACAAGTTG 59.363 43.478 0.00 0.00 36.94 3.16
1972 2028 3.910989 AGCCTTTAGTCCCAAACAAGTT 58.089 40.909 0.00 0.00 0.00 2.66
1973 2029 3.595190 AGCCTTTAGTCCCAAACAAGT 57.405 42.857 0.00 0.00 0.00 3.16
1974 2030 4.099419 ACAAAGCCTTTAGTCCCAAACAAG 59.901 41.667 0.00 0.00 0.00 3.16
1975 2031 4.027437 ACAAAGCCTTTAGTCCCAAACAA 58.973 39.130 0.00 0.00 0.00 2.83
1976 2032 3.637769 ACAAAGCCTTTAGTCCCAAACA 58.362 40.909 0.00 0.00 0.00 2.83
1977 2033 4.142026 ACAACAAAGCCTTTAGTCCCAAAC 60.142 41.667 0.00 0.00 0.00 2.93
1978 2034 4.027437 ACAACAAAGCCTTTAGTCCCAAA 58.973 39.130 0.00 0.00 0.00 3.28
1979 2035 3.637769 ACAACAAAGCCTTTAGTCCCAA 58.362 40.909 0.00 0.00 0.00 4.12
1980 2036 3.306472 ACAACAAAGCCTTTAGTCCCA 57.694 42.857 0.00 0.00 0.00 4.37
1981 2037 3.383505 ACAACAACAAAGCCTTTAGTCCC 59.616 43.478 0.00 0.00 0.00 4.46
1982 2038 4.649088 ACAACAACAAAGCCTTTAGTCC 57.351 40.909 0.00 0.00 0.00 3.85
1983 2039 5.407502 ACAACAACAACAAAGCCTTTAGTC 58.592 37.500 0.00 0.00 0.00 2.59
1984 2040 5.400066 ACAACAACAACAAAGCCTTTAGT 57.600 34.783 0.00 0.00 0.00 2.24
1985 2041 5.637387 ACAACAACAACAACAAAGCCTTTAG 59.363 36.000 0.00 0.00 0.00 1.85
1986 2042 5.542779 ACAACAACAACAACAAAGCCTTTA 58.457 33.333 0.00 0.00 0.00 1.85
1987 2043 4.384940 ACAACAACAACAACAAAGCCTTT 58.615 34.783 0.00 0.00 0.00 3.11
1988 2044 4.001618 ACAACAACAACAACAAAGCCTT 57.998 36.364 0.00 0.00 0.00 4.35
1989 2045 3.676291 ACAACAACAACAACAAAGCCT 57.324 38.095 0.00 0.00 0.00 4.58
1990 2046 3.496507 ACAACAACAACAACAACAAAGCC 59.503 39.130 0.00 0.00 0.00 4.35
1991 2047 4.723879 ACAACAACAACAACAACAAAGC 57.276 36.364 0.00 0.00 0.00 3.51
1992 2048 6.279227 TCAACAACAACAACAACAACAAAG 57.721 33.333 0.00 0.00 0.00 2.77
1993 2049 6.662414 TTCAACAACAACAACAACAACAAA 57.338 29.167 0.00 0.00 0.00 2.83
1994 2050 6.662414 TTTCAACAACAACAACAACAACAA 57.338 29.167 0.00 0.00 0.00 2.83
1995 2051 6.653183 CATTTCAACAACAACAACAACAACA 58.347 32.000 0.00 0.00 0.00 3.33
1996 2052 5.563374 GCATTTCAACAACAACAACAACAAC 59.437 36.000 0.00 0.00 0.00 3.32
1997 2053 5.468072 AGCATTTCAACAACAACAACAACAA 59.532 32.000 0.00 0.00 0.00 2.83
1998 2054 4.993584 AGCATTTCAACAACAACAACAACA 59.006 33.333 0.00 0.00 0.00 3.33
1999 2055 5.529014 AGCATTTCAACAACAACAACAAC 57.471 34.783 0.00 0.00 0.00 3.32
2000 2056 7.840342 ATTAGCATTTCAACAACAACAACAA 57.160 28.000 0.00 0.00 0.00 2.83
2001 2057 7.840342 AATTAGCATTTCAACAACAACAACA 57.160 28.000 0.00 0.00 0.00 3.33
2002 2058 9.553418 AAAAATTAGCATTTCAACAACAACAAC 57.447 25.926 0.00 0.00 30.80 3.32
2003 2059 9.552114 CAAAAATTAGCATTTCAACAACAACAA 57.448 25.926 0.00 0.00 30.80 2.83
2004 2060 8.939929 TCAAAAATTAGCATTTCAACAACAACA 58.060 25.926 0.00 0.00 30.80 3.33
2005 2061 9.766277 TTCAAAAATTAGCATTTCAACAACAAC 57.234 25.926 0.00 0.00 30.80 3.32
2006 2062 9.985318 CTTCAAAAATTAGCATTTCAACAACAA 57.015 25.926 0.00 0.00 30.80 2.83
2007 2063 9.160496 ACTTCAAAAATTAGCATTTCAACAACA 57.840 25.926 0.00 0.00 30.80 3.33
2008 2064 9.424659 CACTTCAAAAATTAGCATTTCAACAAC 57.575 29.630 0.00 0.00 30.80 3.32
2009 2065 8.121708 GCACTTCAAAAATTAGCATTTCAACAA 58.878 29.630 0.00 0.00 30.80 2.83
2010 2066 7.254727 GGCACTTCAAAAATTAGCATTTCAACA 60.255 33.333 0.00 0.00 30.80 3.33
2011 2067 7.071414 GGCACTTCAAAAATTAGCATTTCAAC 58.929 34.615 0.00 0.00 30.80 3.18
2012 2068 6.073873 CGGCACTTCAAAAATTAGCATTTCAA 60.074 34.615 0.00 0.00 30.80 2.69
2037 2093 7.688578 GCATTACGTTGTCAGATCTAAAAAGTC 59.311 37.037 0.00 0.00 0.00 3.01
2119 2175 1.630369 TCCATCACAAACCAGCTAGCT 59.370 47.619 12.68 12.68 0.00 3.32
2160 2216 6.017605 AGCTGAAAAATGCTAGTGGAATATCG 60.018 38.462 0.00 0.00 37.81 2.92
2208 2264 6.533730 TGAAGATAGGATGCGATAAATTGGT 58.466 36.000 0.00 0.00 0.00 3.67
2219 2275 6.036408 GCAAAAATGGTTTGAAGATAGGATGC 59.964 38.462 3.07 0.00 0.00 3.91
2220 2276 6.254157 CGCAAAAATGGTTTGAAGATAGGATG 59.746 38.462 3.07 0.00 0.00 3.51
2226 2282 8.519526 TCTATTACGCAAAAATGGTTTGAAGAT 58.480 29.630 3.07 0.00 0.00 2.40
2236 2292 7.192913 TGCAATACCTCTATTACGCAAAAATG 58.807 34.615 0.00 0.00 0.00 2.32
2238 2294 6.745159 TGCAATACCTCTATTACGCAAAAA 57.255 33.333 0.00 0.00 0.00 1.94
2248 2304 9.950496 CCATATCTAAAGTTGCAATACCTCTAT 57.050 33.333 0.59 0.00 0.00 1.98
2368 2424 7.067008 GGTAAATATGCAAGTAGTCAATGTGGT 59.933 37.037 0.00 0.00 0.00 4.16
2432 2488 6.663523 TCAGTAGTACAGAACAGGAATCATCA 59.336 38.462 2.52 0.00 0.00 3.07
2440 2496 6.513180 TCAACTTTCAGTAGTACAGAACAGG 58.487 40.000 7.57 4.73 0.00 4.00
2683 2739 2.490148 TAGCCGCATGGTCTCCTCG 61.490 63.158 0.00 0.00 37.67 4.63
2704 2760 3.947841 CGAGCTCCTCTCTCCGCG 61.948 72.222 8.47 0.00 39.70 6.46
2749 2805 1.323271 CCTCCAGTGCTCTTCGCCTA 61.323 60.000 0.00 0.00 38.05 3.93
2778 2834 6.092259 CCCTAACCTTTATACGAATATGCTGC 59.908 42.308 0.00 0.00 0.00 5.25
2941 3003 2.252072 GACCACTGGGCCGCTTGATA 62.252 60.000 0.00 0.00 37.90 2.15
3097 3161 5.867174 TGGTAAACACGATCTGATAACACTG 59.133 40.000 0.00 0.00 0.00 3.66
3137 3237 3.708631 AGAGTGAGTGGAAGGGTGATATG 59.291 47.826 0.00 0.00 0.00 1.78
3231 3465 2.910977 AGGAACGGAGGGAGTACAAATT 59.089 45.455 0.00 0.00 0.00 1.82
3236 3470 6.416631 AATATTTAGGAACGGAGGGAGTAC 57.583 41.667 0.00 0.00 0.00 2.73
3237 3471 6.384886 ACAAATATTTAGGAACGGAGGGAGTA 59.615 38.462 0.00 0.00 0.00 2.59
3238 3472 5.191124 ACAAATATTTAGGAACGGAGGGAGT 59.809 40.000 0.00 0.00 0.00 3.85
3239 3473 5.681639 ACAAATATTTAGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
3240 3474 5.427481 AGACAAATATTTAGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
3241 3475 5.681639 AGACAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
3242 3476 7.553044 AGAAAGACAAATATTTAGGAACGGAGG 59.447 37.037 0.00 0.00 0.00 4.30
3243 3477 8.494016 AGAAAGACAAATATTTAGGAACGGAG 57.506 34.615 0.00 0.00 0.00 4.63
3244 3478 9.595823 CTAGAAAGACAAATATTTAGGAACGGA 57.404 33.333 0.00 0.00 0.00 4.69
3245 3479 9.595823 TCTAGAAAGACAAATATTTAGGAACGG 57.404 33.333 0.00 0.00 0.00 4.44
3258 3492 9.396022 ACTTGTTGAAATCTCTAGAAAGACAAA 57.604 29.630 0.00 0.00 0.00 2.83
3259 3493 8.830580 CACTTGTTGAAATCTCTAGAAAGACAA 58.169 33.333 0.00 0.00 0.00 3.18
3260 3494 8.204160 TCACTTGTTGAAATCTCTAGAAAGACA 58.796 33.333 0.00 0.00 0.00 3.41
3261 3495 8.491950 GTCACTTGTTGAAATCTCTAGAAAGAC 58.508 37.037 0.00 0.00 35.39 3.01
3262 3496 8.424918 AGTCACTTGTTGAAATCTCTAGAAAGA 58.575 33.333 0.00 0.00 35.39 2.52
3263 3497 8.600449 AGTCACTTGTTGAAATCTCTAGAAAG 57.400 34.615 0.00 0.00 35.39 2.62
3264 3498 9.477484 GTAGTCACTTGTTGAAATCTCTAGAAA 57.523 33.333 0.00 0.00 35.39 2.52
3265 3499 8.638873 TGTAGTCACTTGTTGAAATCTCTAGAA 58.361 33.333 0.00 0.00 35.39 2.10
3266 3500 8.178313 TGTAGTCACTTGTTGAAATCTCTAGA 57.822 34.615 0.00 0.00 35.39 2.43
3267 3501 8.994429 ATGTAGTCACTTGTTGAAATCTCTAG 57.006 34.615 0.00 0.00 35.39 2.43
3268 3502 9.856488 GTATGTAGTCACTTGTTGAAATCTCTA 57.144 33.333 0.00 0.00 35.39 2.43
3269 3503 7.542477 CGTATGTAGTCACTTGTTGAAATCTCT 59.458 37.037 0.00 0.00 35.39 3.10
3270 3504 7.201444 CCGTATGTAGTCACTTGTTGAAATCTC 60.201 40.741 0.00 0.00 35.39 2.75
3271 3505 6.590292 CCGTATGTAGTCACTTGTTGAAATCT 59.410 38.462 0.00 0.00 35.39 2.40
3272 3506 6.588756 TCCGTATGTAGTCACTTGTTGAAATC 59.411 38.462 0.00 0.00 35.39 2.17
3273 3507 6.460781 TCCGTATGTAGTCACTTGTTGAAAT 58.539 36.000 0.00 0.00 35.39 2.17
3274 3508 5.845103 TCCGTATGTAGTCACTTGTTGAAA 58.155 37.500 0.00 0.00 35.39 2.69
3275 3509 5.456548 TCCGTATGTAGTCACTTGTTGAA 57.543 39.130 0.00 0.00 35.39 2.69
3276 3510 4.617530 GCTCCGTATGTAGTCACTTGTTGA 60.618 45.833 0.00 0.00 0.00 3.18
3277 3511 3.612860 GCTCCGTATGTAGTCACTTGTTG 59.387 47.826 0.00 0.00 0.00 3.33
3278 3512 3.257375 TGCTCCGTATGTAGTCACTTGTT 59.743 43.478 0.00 0.00 0.00 2.83
3279 3513 2.823747 TGCTCCGTATGTAGTCACTTGT 59.176 45.455 0.00 0.00 0.00 3.16
3280 3514 3.503827 TGCTCCGTATGTAGTCACTTG 57.496 47.619 0.00 0.00 0.00 3.16
3281 3515 4.530710 TTTGCTCCGTATGTAGTCACTT 57.469 40.909 0.00 0.00 0.00 3.16
3282 3516 4.530710 TTTTGCTCCGTATGTAGTCACT 57.469 40.909 0.00 0.00 0.00 3.41
3283 3517 4.868171 TCATTTTGCTCCGTATGTAGTCAC 59.132 41.667 0.00 0.00 0.00 3.67
3284 3518 5.079689 TCATTTTGCTCCGTATGTAGTCA 57.920 39.130 0.00 0.00 0.00 3.41
3285 3519 5.005779 CACTCATTTTGCTCCGTATGTAGTC 59.994 44.000 0.00 0.00 0.00 2.59
3286 3520 4.870426 CACTCATTTTGCTCCGTATGTAGT 59.130 41.667 0.00 0.00 0.00 2.73
3287 3521 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
3288 3522 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
3289 3523 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
3290 3524 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
3291 3525 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
3292 3526 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
3293 3527 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
3294 3528 5.998454 ATAGATTCACTCATTTTGCTCCG 57.002 39.130 0.00 0.00 0.00 4.63
3295 3529 7.930865 AGAGTATAGATTCACTCATTTTGCTCC 59.069 37.037 4.70 0.00 42.99 4.70
3296 3530 8.885494 AGAGTATAGATTCACTCATTTTGCTC 57.115 34.615 4.70 0.00 42.99 4.26
3330 3564 9.682465 GGACTACCACATACTGATGTATATAGA 57.318 37.037 8.35 0.00 44.82 1.98
3331 3565 9.462606 TGGACTACCACATACTGATGTATATAG 57.537 37.037 0.00 0.00 44.82 1.31
3352 3586 9.354673 TGTCTTTTTAGAGATTTCAAATGGACT 57.645 29.630 0.00 0.00 0.00 3.85
3353 3587 9.965824 TTGTCTTTTTAGAGATTTCAAATGGAC 57.034 29.630 0.00 0.00 0.00 4.02
3371 3605 8.981659 CCCTCCATTCCTAAATATTTGTCTTTT 58.018 33.333 11.05 0.00 0.00 2.27
3372 3606 8.122481 ACCCTCCATTCCTAAATATTTGTCTTT 58.878 33.333 11.05 0.00 0.00 2.52
3373 3607 7.561356 CACCCTCCATTCCTAAATATTTGTCTT 59.439 37.037 11.05 0.00 0.00 3.01
3374 3608 7.062957 CACCCTCCATTCCTAAATATTTGTCT 58.937 38.462 11.05 0.00 0.00 3.41
3375 3609 6.833933 ACACCCTCCATTCCTAAATATTTGTC 59.166 38.462 11.05 0.00 0.00 3.18
3376 3610 6.741724 ACACCCTCCATTCCTAAATATTTGT 58.258 36.000 11.05 0.00 0.00 2.83
3377 3611 7.998964 ACTACACCCTCCATTCCTAAATATTTG 59.001 37.037 11.05 1.40 0.00 2.32
3378 3612 8.114301 ACTACACCCTCCATTCCTAAATATTT 57.886 34.615 5.89 5.89 0.00 1.40
3379 3613 7.707467 ACTACACCCTCCATTCCTAAATATT 57.293 36.000 0.00 0.00 0.00 1.28
3380 3614 7.707467 AACTACACCCTCCATTCCTAAATAT 57.293 36.000 0.00 0.00 0.00 1.28
3381 3615 7.519347 AAACTACACCCTCCATTCCTAAATA 57.481 36.000 0.00 0.00 0.00 1.40
3382 3616 6.402981 AAACTACACCCTCCATTCCTAAAT 57.597 37.500 0.00 0.00 0.00 1.40
3383 3617 5.853572 AAACTACACCCTCCATTCCTAAA 57.146 39.130 0.00 0.00 0.00 1.85
3384 3618 5.550403 AGAAAACTACACCCTCCATTCCTAA 59.450 40.000 0.00 0.00 0.00 2.69
3385 3619 5.098663 AGAAAACTACACCCTCCATTCCTA 58.901 41.667 0.00 0.00 0.00 2.94
3386 3620 3.916989 AGAAAACTACACCCTCCATTCCT 59.083 43.478 0.00 0.00 0.00 3.36
3387 3621 4.302559 AGAAAACTACACCCTCCATTCC 57.697 45.455 0.00 0.00 0.00 3.01
3388 3622 5.801380 TGTAGAAAACTACACCCTCCATTC 58.199 41.667 6.07 0.00 35.18 2.67
3389 3623 5.836024 TGTAGAAAACTACACCCTCCATT 57.164 39.130 6.07 0.00 35.18 3.16
3390 3624 7.691993 ATATGTAGAAAACTACACCCTCCAT 57.308 36.000 11.41 0.00 41.85 3.41
3391 3625 7.504926 AATATGTAGAAAACTACACCCTCCA 57.495 36.000 11.41 0.00 41.85 3.86
3392 3626 8.044908 TGAAATATGTAGAAAACTACACCCTCC 58.955 37.037 11.41 4.09 41.85 4.30
3393 3627 9.614792 ATGAAATATGTAGAAAACTACACCCTC 57.385 33.333 11.41 7.53 41.85 4.30
3394 3628 9.614792 GATGAAATATGTAGAAAACTACACCCT 57.385 33.333 11.41 1.01 41.85 4.34
3395 3629 9.391006 TGATGAAATATGTAGAAAACTACACCC 57.609 33.333 11.41 2.45 41.85 4.61
3427 3661 8.230472 ACTGAGAAATGCCTGGATTAATTTAG 57.770 34.615 0.00 0.00 0.00 1.85
3428 3662 8.593945 AACTGAGAAATGCCTGGATTAATTTA 57.406 30.769 0.00 0.00 0.00 1.40
3481 3727 9.301153 CCTTCTTACAATTTGTTTATATGGTGC 57.699 33.333 7.45 0.00 0.00 5.01
3517 3763 8.862325 TCTTGGTATTTACATTGATGTTGTCT 57.138 30.769 1.46 0.00 41.97 3.41
3537 3783 6.479660 ACATGTAAAAGCAACAATGTTCTTGG 59.520 34.615 0.00 0.00 0.00 3.61
3720 3976 4.182132 CTCTCTGAGCAGCAACGG 57.818 61.111 0.00 0.00 0.00 4.44


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.