Multiple sequence alignment - TraesCS7D01G131900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G131900 chr7D 100.000 9455 0 0 1 9455 83630442 83620988 0.000000e+00 17461.0
1 TraesCS7D01G131900 chr7D 96.411 1003 22 2 8467 9455 10831315 10830313 0.000000e+00 1640.0
2 TraesCS7D01G131900 chr7B 95.294 2741 83 15 3220 5946 33077536 33074828 0.000000e+00 4305.0
3 TraesCS7D01G131900 chr7B 90.968 3244 167 41 1 3214 33080720 33077573 0.000000e+00 4252.0
4 TraesCS7D01G131900 chr7B 96.597 1734 50 8 5936 7665 33074490 33072762 0.000000e+00 2867.0
5 TraesCS7D01G131900 chr7B 88.416 1010 94 7 8467 9455 745479245 745478238 0.000000e+00 1195.0
6 TraesCS7D01G131900 chr7B 92.386 591 35 1 8875 9455 532062011 532061421 0.000000e+00 833.0
7 TraesCS7D01G131900 chr7B 96.585 410 14 0 8049 8458 33072391 33071982 0.000000e+00 680.0
8 TraesCS7D01G131900 chr7B 96.471 85 2 1 7961 8044 33072527 33072443 1.280000e-28 139.0
9 TraesCS7D01G131900 chr7B 95.833 72 3 0 7872 7943 304527176 304527247 6.000000e-22 117.0
10 TraesCS7D01G131900 chr7B 94.521 73 3 1 7872 7943 516786889 516786961 2.790000e-20 111.0
11 TraesCS7D01G131900 chr7A 95.016 2749 88 19 3220 5946 85210851 85208130 0.000000e+00 4272.0
12 TraesCS7D01G131900 chr7A 96.066 1754 44 12 5932 7665 85207959 85206211 0.000000e+00 2833.0
13 TraesCS7D01G131900 chr7A 95.384 1538 65 5 1680 3214 85212428 85210894 0.000000e+00 2442.0
14 TraesCS7D01G131900 chr7A 90.308 1589 83 24 1 1562 85213965 85212421 0.000000e+00 2015.0
15 TraesCS7D01G131900 chr7A 88.351 1013 95 8 8464 9455 732180367 732181377 0.000000e+00 1195.0
16 TraesCS7D01G131900 chr7A 94.146 410 23 1 8053 8461 85205685 85205276 2.900000e-174 623.0
17 TraesCS7D01G131900 chr3A 89.109 1010 87 7 8467 9455 744779910 744780917 0.000000e+00 1234.0
18 TraesCS7D01G131900 chr3A 88.967 426 36 3 9040 9455 714760620 714761044 5.060000e-142 516.0
19 TraesCS7D01G131900 chr3A 84.314 153 21 3 7684 7835 461843642 461843492 7.650000e-31 147.0
20 TraesCS7D01G131900 chr2A 88.074 1023 88 9 8466 9455 769945436 769946457 0.000000e+00 1182.0
21 TraesCS7D01G131900 chr2A 100.000 29 0 0 7944 7972 488463308 488463336 5.000000e-03 54.7
22 TraesCS7D01G131900 chr6A 91.709 591 39 1 8875 9455 242178267 242178857 0.000000e+00 811.0
23 TraesCS7D01G131900 chr6A 87.121 396 46 4 8465 8856 242177437 242177831 2.420000e-120 444.0
24 TraesCS7D01G131900 chr6A 95.000 100 5 0 4681 4780 494464994 494465093 3.530000e-34 158.0
25 TraesCS7D01G131900 chr1B 89.855 621 49 4 8845 9455 21538608 21539224 0.000000e+00 785.0
26 TraesCS7D01G131900 chr1B 86.772 378 47 2 8467 8842 21537816 21538192 1.470000e-112 418.0
27 TraesCS7D01G131900 chr6D 80.993 584 85 19 8467 9036 313343138 313343709 3.130000e-119 440.0
28 TraesCS7D01G131900 chr6D 95.876 97 4 0 4684 4780 349927770 349927674 3.530000e-34 158.0
29 TraesCS7D01G131900 chr6D 100.000 28 0 0 7945 7972 139634510 139634537 1.700000e-02 52.8
30 TraesCS7D01G131900 chr4A 84.483 348 47 6 8465 8808 592413421 592413765 4.230000e-88 337.0
31 TraesCS7D01G131900 chr4A 100.000 32 0 0 7944 7975 49257454 49257485 1.030000e-04 60.2
32 TraesCS7D01G131900 chr4A 94.737 38 1 1 7947 7984 581958080 581958116 3.690000e-04 58.4
33 TraesCS7D01G131900 chr3B 87.662 154 17 2 7683 7835 440135643 440135795 2.710000e-40 178.0
34 TraesCS7D01G131900 chr3B 90.244 41 2 2 4004 4043 385479384 385479345 1.700000e-02 52.8
35 TraesCS7D01G131900 chr6B 93.000 100 7 0 4681 4780 530560363 530560462 7.650000e-31 147.0
36 TraesCS7D01G131900 chr6B 88.235 102 11 1 4679 4780 567471602 567471502 4.640000e-23 121.0
37 TraesCS7D01G131900 chr6B 100.000 29 0 0 7944 7972 372214520 372214492 5.000000e-03 54.7
38 TraesCS7D01G131900 chr3D 90.909 99 9 0 4683 4781 352795402 352795500 5.960000e-27 134.0
39 TraesCS7D01G131900 chr3D 93.333 75 4 1 7868 7942 71512914 71512841 1.000000e-19 110.0
40 TraesCS7D01G131900 chr4B 88.776 98 11 0 4683 4780 472388265 472388168 4.640000e-23 121.0
41 TraesCS7D01G131900 chr4B 95.775 71 3 0 7873 7943 116483436 116483366 2.160000e-21 115.0
42 TraesCS7D01G131900 chr5D 95.890 73 3 0 7871 7943 526139173 526139245 1.670000e-22 119.0
43 TraesCS7D01G131900 chr5D 95.833 72 3 0 7872 7943 332584294 332584365 6.000000e-22 117.0
44 TraesCS7D01G131900 chr2B 88.119 101 9 2 4684 4784 97569959 97569862 6.000000e-22 117.0
45 TraesCS7D01G131900 chr1A 95.775 71 3 0 7872 7942 251345784 251345854 2.160000e-21 115.0
46 TraesCS7D01G131900 chr5B 95.714 70 3 0 7874 7943 81177118 81177049 7.760000e-21 113.0
47 TraesCS7D01G131900 chr2D 86.957 92 10 2 7853 7943 206682776 206682686 1.680000e-17 102.0
48 TraesCS7D01G131900 chr4D 100.000 32 0 0 7944 7975 414153599 414153568 1.030000e-04 60.2
49 TraesCS7D01G131900 chr4D 100.000 28 0 0 7945 7972 475015153 475015126 1.700000e-02 52.8
50 TraesCS7D01G131900 chr5A 100.000 29 0 0 7944 7972 614435602 614435630 5.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G131900 chr7D 83620988 83630442 9454 True 17461.0 17461 100.0000 1 9455 1 chr7D.!!$R2 9454
1 TraesCS7D01G131900 chr7D 10830313 10831315 1002 True 1640.0 1640 96.4110 8467 9455 1 chr7D.!!$R1 988
2 TraesCS7D01G131900 chr7B 33071982 33080720 8738 True 2448.6 4305 95.1830 1 8458 5 chr7B.!!$R3 8457
3 TraesCS7D01G131900 chr7B 745478238 745479245 1007 True 1195.0 1195 88.4160 8467 9455 1 chr7B.!!$R2 988
4 TraesCS7D01G131900 chr7B 532061421 532062011 590 True 833.0 833 92.3860 8875 9455 1 chr7B.!!$R1 580
5 TraesCS7D01G131900 chr7A 85205276 85213965 8689 True 2437.0 4272 94.1840 1 8461 5 chr7A.!!$R1 8460
6 TraesCS7D01G131900 chr7A 732180367 732181377 1010 False 1195.0 1195 88.3510 8464 9455 1 chr7A.!!$F1 991
7 TraesCS7D01G131900 chr3A 744779910 744780917 1007 False 1234.0 1234 89.1090 8467 9455 1 chr3A.!!$F2 988
8 TraesCS7D01G131900 chr2A 769945436 769946457 1021 False 1182.0 1182 88.0740 8466 9455 1 chr2A.!!$F2 989
9 TraesCS7D01G131900 chr6A 242177437 242178857 1420 False 627.5 811 89.4150 8465 9455 2 chr6A.!!$F2 990
10 TraesCS7D01G131900 chr1B 21537816 21539224 1408 False 601.5 785 88.3135 8467 9455 2 chr1B.!!$F1 988
11 TraesCS7D01G131900 chr6D 313343138 313343709 571 False 440.0 440 80.9930 8467 9036 1 chr6D.!!$F2 569

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
973 1009 0.106469 GGATCCTCTTTTGGCCCCTC 60.106 60.000 3.84 0.00 0.00 4.30 F
1455 1494 0.458669 TCCTCGACGGCTTCCATAAC 59.541 55.000 0.00 0.00 0.00 1.89 F
1913 1958 0.384669 CCGACAGAGTACCCGATTCC 59.615 60.000 0.00 0.00 0.00 3.01 F
2517 2568 1.134521 TCACTCAGCTGTTTGGTCGTT 60.135 47.619 14.67 0.00 0.00 3.85 F
4390 4486 1.180029 GAGCATGAATGGTTGGCAGT 58.820 50.000 0.00 0.00 38.85 4.40 F
4863 4964 0.036875 GCTCCAGTGTTGGCCTTACT 59.963 55.000 3.32 2.46 44.63 2.24 F
5305 5409 6.043327 TCATATTGAAATGTTAACGGCTCG 57.957 37.500 0.26 0.00 0.00 5.03 F
6005 6468 0.179000 AATGGCCAGGTAGCTTCTCG 59.821 55.000 13.05 0.00 0.00 4.04 F
7734 8413 0.820871 GATGCCTCTTCAGACCTCGT 59.179 55.000 0.00 0.00 0.00 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1902 1947 1.227176 GGTCTGCGGAATCGGGTAC 60.227 63.158 0.00 0.0 36.79 3.34 R
3314 3406 0.324943 TGGAGCCCAGCAACTAAGAC 59.675 55.000 0.00 0.0 0.00 3.01 R
3787 3881 3.124128 CACATTCACGTGATGAGTTCCAG 59.876 47.826 20.80 3.1 38.99 3.86 R
4437 4533 0.106268 TGCACAAACCCATCCAGTGT 60.106 50.000 0.00 0.0 32.99 3.55 R
5701 5816 2.235898 TGGTGGGCCTTAAAATGCATTC 59.764 45.455 13.38 0.0 35.27 2.67 R
5892 6007 2.838736 AGAACATATGCTGGGCTAACG 58.161 47.619 1.58 0.0 0.00 3.18 R
7026 7489 3.518590 CGAAAGACCCGCACTAAAGTAT 58.481 45.455 0.00 0.0 0.00 2.12 R
7869 8548 0.945813 GAGACGGAGGGAGTACATCG 59.054 60.000 0.00 0.0 0.00 3.84 R
8586 9316 0.830444 AGAGAGTACAACGGCACCCA 60.830 55.000 0.00 0.0 0.00 4.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
64 65 5.339008 AGACTGCGAATATCAACTAACCA 57.661 39.130 0.00 0.00 0.00 3.67
89 90 2.755876 GGGGCCAGCCTTTACAGC 60.756 66.667 4.39 0.00 36.10 4.40
90 91 2.035626 GGGCCAGCCTTTACAGCA 59.964 61.111 4.39 0.00 36.10 4.41
139 140 1.367659 GAGATCTTCAGCCTGCACAC 58.632 55.000 0.00 0.00 0.00 3.82
141 142 1.364626 GATCTTCAGCCTGCACACCG 61.365 60.000 0.00 0.00 0.00 4.94
180 188 1.941325 GGGTCGACAAGCCTTATCAG 58.059 55.000 18.91 0.00 42.62 2.90
181 189 1.207329 GGGTCGACAAGCCTTATCAGT 59.793 52.381 18.91 0.00 42.62 3.41
182 190 2.271800 GGTCGACAAGCCTTATCAGTG 58.728 52.381 18.91 0.00 0.00 3.66
183 191 2.271800 GTCGACAAGCCTTATCAGTGG 58.728 52.381 11.55 0.00 0.00 4.00
184 192 1.207089 TCGACAAGCCTTATCAGTGGG 59.793 52.381 0.00 0.00 0.00 4.61
185 193 1.066143 CGACAAGCCTTATCAGTGGGT 60.066 52.381 0.00 0.00 35.34 4.51
186 194 2.615493 CGACAAGCCTTATCAGTGGGTT 60.615 50.000 0.00 0.00 43.79 4.11
187 195 3.369052 CGACAAGCCTTATCAGTGGGTTA 60.369 47.826 0.00 0.00 41.44 2.85
188 196 4.192317 GACAAGCCTTATCAGTGGGTTAG 58.808 47.826 0.00 0.00 41.44 2.34
189 197 3.844211 ACAAGCCTTATCAGTGGGTTAGA 59.156 43.478 0.00 0.00 41.44 2.10
190 198 4.288626 ACAAGCCTTATCAGTGGGTTAGAA 59.711 41.667 0.00 0.00 41.44 2.10
191 199 5.044846 ACAAGCCTTATCAGTGGGTTAGAAT 60.045 40.000 0.00 0.00 41.44 2.40
192 200 5.041191 AGCCTTATCAGTGGGTTAGAATG 57.959 43.478 0.00 0.00 0.00 2.67
193 201 4.475016 AGCCTTATCAGTGGGTTAGAATGT 59.525 41.667 0.00 0.00 0.00 2.71
194 202 5.665812 AGCCTTATCAGTGGGTTAGAATGTA 59.334 40.000 0.00 0.00 0.00 2.29
195 203 5.758784 GCCTTATCAGTGGGTTAGAATGTAC 59.241 44.000 0.00 0.00 0.00 2.90
196 204 6.631766 GCCTTATCAGTGGGTTAGAATGTACA 60.632 42.308 0.00 0.00 0.00 2.90
197 205 6.986817 CCTTATCAGTGGGTTAGAATGTACAG 59.013 42.308 0.33 0.00 0.00 2.74
198 206 7.364762 CCTTATCAGTGGGTTAGAATGTACAGT 60.365 40.741 0.33 0.00 0.00 3.55
199 207 8.598202 TTATCAGTGGGTTAGAATGTACAGTA 57.402 34.615 0.33 0.00 0.00 2.74
200 208 6.276832 TCAGTGGGTTAGAATGTACAGTAC 57.723 41.667 0.33 3.49 0.00 2.73
201 209 5.776208 TCAGTGGGTTAGAATGTACAGTACA 59.224 40.000 15.90 15.90 43.80 2.90
202 210 5.867716 CAGTGGGTTAGAATGTACAGTACAC 59.132 44.000 15.89 4.46 42.23 2.90
203 211 5.541101 AGTGGGTTAGAATGTACAGTACACA 59.459 40.000 15.89 4.11 42.23 3.72
204 212 6.042322 AGTGGGTTAGAATGTACAGTACACAA 59.958 38.462 15.89 5.36 42.23 3.33
205 213 6.707161 GTGGGTTAGAATGTACAGTACACAAA 59.293 38.462 15.89 5.36 42.23 2.83
275 288 0.389948 ACCCTTTTAGCTCGCGACAG 60.390 55.000 3.71 0.00 0.00 3.51
392 407 4.900635 AAGACACAAAAATCGAAGCACT 57.099 36.364 0.00 0.00 0.00 4.40
404 419 2.672874 TCGAAGCACTGATCAAAATCCG 59.327 45.455 0.00 0.00 0.00 4.18
429 444 1.159285 CTGCTGCATCCAAGAACGAA 58.841 50.000 1.31 0.00 0.00 3.85
431 446 0.169009 GCTGCATCCAAGAACGAACC 59.831 55.000 0.00 0.00 0.00 3.62
432 447 1.813513 CTGCATCCAAGAACGAACCT 58.186 50.000 0.00 0.00 0.00 3.50
473 488 2.546795 GGGCAACTCACTCATATCCTCG 60.547 54.545 0.00 0.00 0.00 4.63
568 588 4.219288 GCATCCACAGAAAAAGGAATCAGT 59.781 41.667 0.00 0.00 34.62 3.41
615 635 0.615850 GTTCAGAGGAACCTGGGGAG 59.384 60.000 0.00 0.00 46.18 4.30
616 636 0.193574 TTCAGAGGAACCTGGGGAGT 59.806 55.000 0.00 0.00 34.99 3.85
617 637 0.252284 TCAGAGGAACCTGGGGAGTC 60.252 60.000 0.00 0.00 34.99 3.36
618 638 1.305381 AGAGGAACCTGGGGAGTCG 60.305 63.158 0.00 0.00 0.00 4.18
619 639 1.305046 GAGGAACCTGGGGAGTCGA 60.305 63.158 0.00 0.00 0.00 4.20
620 640 1.305381 AGGAACCTGGGGAGTCGAG 60.305 63.158 0.00 0.00 0.00 4.04
621 641 2.359967 GGAACCTGGGGAGTCGAGG 61.360 68.421 0.00 0.00 45.59 4.63
622 642 2.284699 AACCTGGGGAGTCGAGGG 60.285 66.667 0.00 0.00 44.56 4.30
953 989 1.227999 TTGCACGTGCTTGTAGCCTC 61.228 55.000 37.59 8.73 41.51 4.70
964 1000 2.160721 TGTAGCCTCGGATCCTCTTT 57.839 50.000 10.75 0.00 0.00 2.52
973 1009 0.106469 GGATCCTCTTTTGGCCCCTC 60.106 60.000 3.84 0.00 0.00 4.30
998 1034 2.203640 TCACGGACTGGCAGACCT 60.204 61.111 28.53 15.79 36.63 3.85
1288 1327 4.096003 CCGCCGTGAAGGATGGGT 62.096 66.667 0.00 0.00 45.00 4.51
1302 1341 5.010708 AGGATGGGTTTGTTTACTTGGAT 57.989 39.130 0.00 0.00 0.00 3.41
1305 1344 5.336451 GGATGGGTTTGTTTACTTGGATGAC 60.336 44.000 0.00 0.00 0.00 3.06
1429 1468 1.375396 TTCGCCATGGACTCGTTGG 60.375 57.895 18.40 0.00 0.00 3.77
1455 1494 0.458669 TCCTCGACGGCTTCCATAAC 59.541 55.000 0.00 0.00 0.00 1.89
1502 1541 2.342279 CGGTGGAAGGCTCGTCAA 59.658 61.111 0.00 0.00 0.00 3.18
1507 1546 2.351738 GGTGGAAGGCTCGTCAATTTTG 60.352 50.000 0.00 0.00 0.00 2.44
1508 1547 2.293399 GTGGAAGGCTCGTCAATTTTGT 59.707 45.455 0.00 0.00 0.00 2.83
1509 1548 2.552315 TGGAAGGCTCGTCAATTTTGTC 59.448 45.455 0.00 0.00 0.00 3.18
1510 1549 2.552315 GGAAGGCTCGTCAATTTTGTCA 59.448 45.455 0.00 0.00 0.00 3.58
1511 1550 3.004315 GGAAGGCTCGTCAATTTTGTCAA 59.996 43.478 0.00 0.00 0.00 3.18
1512 1551 4.321230 GGAAGGCTCGTCAATTTTGTCAAT 60.321 41.667 0.00 0.00 0.00 2.57
1513 1552 4.853924 AGGCTCGTCAATTTTGTCAATT 57.146 36.364 0.00 0.00 0.00 2.32
1515 1554 5.600696 AGGCTCGTCAATTTTGTCAATTTT 58.399 33.333 0.00 0.00 0.00 1.82
1516 1555 5.691754 AGGCTCGTCAATTTTGTCAATTTTC 59.308 36.000 0.00 0.00 0.00 2.29
1517 1556 5.107491 GGCTCGTCAATTTTGTCAATTTTCC 60.107 40.000 0.00 0.00 0.00 3.13
1525 1570 7.976734 TCAATTTTGTCAATTTTCCGTTACTGT 59.023 29.630 0.00 0.00 0.00 3.55
1533 1578 1.225855 TTCCGTTACTGTTGCTGCTG 58.774 50.000 0.00 0.00 0.00 4.41
1579 1624 7.865706 ACTTAGTAGGTTTGATTAGGCATTG 57.134 36.000 0.00 0.00 0.00 2.82
1608 1653 1.656587 TTACATGGCTCCTCTGTGGT 58.343 50.000 0.00 0.00 37.07 4.16
1609 1654 2.543037 TACATGGCTCCTCTGTGGTA 57.457 50.000 0.00 0.00 37.07 3.25
1610 1655 1.198713 ACATGGCTCCTCTGTGGTAG 58.801 55.000 0.00 0.00 37.07 3.18
1615 1660 2.225293 TGGCTCCTCTGTGGTAGTACTT 60.225 50.000 0.00 0.00 37.07 2.24
1628 1673 0.880278 AGTACTTGCGTGTGCTGTGG 60.880 55.000 0.00 0.00 43.34 4.17
1631 1676 1.960763 CTTGCGTGTGCTGTGGCTA 60.961 57.895 0.00 0.00 43.34 3.93
1634 1679 1.080093 GCGTGTGCTGTGGCTAGTA 60.080 57.895 0.00 0.00 39.59 1.82
1636 1681 1.078759 CGTGTGCTGTGGCTAGTAGC 61.079 60.000 14.09 14.09 41.46 3.58
1653 1698 1.195115 AGCCCTTGTCGCTCAGAATA 58.805 50.000 0.00 0.00 0.00 1.75
1790 1835 3.560068 CCGCCCTGATAGTACAATTTCAC 59.440 47.826 0.00 0.00 0.00 3.18
1902 1947 1.080995 GCTTGCTAGTGCCGACAGAG 61.081 60.000 0.00 0.00 38.71 3.35
1913 1958 0.384669 CCGACAGAGTACCCGATTCC 59.615 60.000 0.00 0.00 0.00 3.01
1941 1990 7.592533 CAGACCACTGTTGTTTTATCTTTCATG 59.407 37.037 0.00 0.00 39.11 3.07
2023 2074 2.206223 GGAATACCCCTTCCAGACCTT 58.794 52.381 0.00 0.00 43.56 3.50
2026 2077 3.739401 ATACCCCTTCCAGACCTTTTG 57.261 47.619 0.00 0.00 0.00 2.44
2049 2100 8.964420 TTGTATTCTTGAAATCGAAATGTTCC 57.036 30.769 0.00 0.00 0.00 3.62
2068 2119 1.213926 CCTTTTAGCTGAGCCTCCCAT 59.786 52.381 0.00 0.00 0.00 4.00
2309 2360 7.414540 GCCTACTTTTCAGTTCAGGTAATGATG 60.415 40.741 0.00 0.00 37.89 3.07
2311 2362 4.944962 TTTCAGTTCAGGTAATGATGCG 57.055 40.909 0.00 0.00 37.89 4.73
2368 2419 8.671921 ACTGTTTGAGAATAGATAACATTGCAG 58.328 33.333 0.00 0.00 0.00 4.41
2384 2435 7.230849 ACATTGCAGTTGATTATCCAAAGAA 57.769 32.000 5.80 0.00 0.00 2.52
2385 2436 7.669427 ACATTGCAGTTGATTATCCAAAGAAA 58.331 30.769 5.80 0.00 0.00 2.52
2428 2479 6.462342 TCCTAATCTCCTTTCCCTCCTATTT 58.538 40.000 0.00 0.00 0.00 1.40
2456 2507 8.261492 TGTTTCAAAAGCAATTAAAAGAGCAA 57.739 26.923 0.00 0.00 0.00 3.91
2517 2568 1.134521 TCACTCAGCTGTTTGGTCGTT 60.135 47.619 14.67 0.00 0.00 3.85
2715 2766 6.740110 TGGTGTTGTAACCATACATGTTTTC 58.260 36.000 2.30 0.00 45.43 2.29
2772 2823 7.892609 TGAACTATGCTCACTTGAGTAGTTTA 58.107 34.615 17.11 12.98 40.74 2.01
2787 2838 7.667557 TGAGTAGTTTATTATCGGGAGAATGG 58.332 38.462 0.00 0.00 45.37 3.16
2793 2844 7.502561 AGTTTATTATCGGGAGAATGGAAAAGG 59.497 37.037 0.00 0.00 45.37 3.11
3011 3062 4.321718 TGAAGGAAAGTTGATGAGCTGAG 58.678 43.478 0.00 0.00 0.00 3.35
3198 3249 4.440112 GGTTTCTGGTTCTTTTGTCTGTGG 60.440 45.833 0.00 0.00 0.00 4.17
3199 3250 3.924114 TCTGGTTCTTTTGTCTGTGGA 57.076 42.857 0.00 0.00 0.00 4.02
3201 3252 4.594970 TCTGGTTCTTTTGTCTGTGGAAA 58.405 39.130 0.00 0.00 0.00 3.13
3203 3254 5.656416 TCTGGTTCTTTTGTCTGTGGAAAAT 59.344 36.000 0.00 0.00 0.00 1.82
3204 3255 5.659463 TGGTTCTTTTGTCTGTGGAAAATG 58.341 37.500 0.00 0.00 0.00 2.32
3206 3257 6.106003 GGTTCTTTTGTCTGTGGAAAATGTT 58.894 36.000 0.00 0.00 0.00 2.71
3207 3258 6.255670 GGTTCTTTTGTCTGTGGAAAATGTTC 59.744 38.462 0.00 0.00 0.00 3.18
3208 3259 6.522625 TCTTTTGTCTGTGGAAAATGTTCA 57.477 33.333 0.00 0.00 35.25 3.18
3209 3260 6.929625 TCTTTTGTCTGTGGAAAATGTTCAA 58.070 32.000 0.00 0.00 35.25 2.69
3212 3263 8.558973 TTTTGTCTGTGGAAAATGTTCAAATT 57.441 26.923 0.00 0.00 35.25 1.82
3214 3265 7.769272 TGTCTGTGGAAAATGTTCAAATTTC 57.231 32.000 0.00 0.00 35.25 2.17
3216 3267 8.040132 TGTCTGTGGAAAATGTTCAAATTTCTT 58.960 29.630 0.00 0.00 35.25 2.52
3230 3320 9.959749 GTTCAAATTTCTTACATTCTGTTGGTA 57.040 29.630 0.00 0.00 0.00 3.25
3259 3351 3.805207 ACAATTACAGGGCGGTATTCTC 58.195 45.455 0.00 0.00 0.00 2.87
3314 3406 3.888930 TGCTTTAGGTCCTGTTTTTCCTG 59.111 43.478 0.00 0.00 0.00 3.86
3338 3430 2.355010 AGTTGCTGGGCTCCATTATC 57.645 50.000 0.00 0.00 30.82 1.75
3364 3456 5.662674 ATGTCCAGGTACTCTACTGTTTC 57.337 43.478 0.00 0.00 34.60 2.78
3409 3501 2.450476 AGATTTCGCTTGCCATTTCCT 58.550 42.857 0.00 0.00 0.00 3.36
3643 3736 2.235891 ACAATTTGAAACGGAGGGACC 58.764 47.619 2.79 0.00 0.00 4.46
3696 3789 4.622260 TTCAATGTCTGGACACATCTGA 57.378 40.909 5.52 4.54 45.05 3.27
3761 3854 6.976934 ATTGGACATTCAGGTTTACAAGTT 57.023 33.333 0.00 0.00 0.00 2.66
3787 3881 2.698797 TGCTATACTGGGAGTTGTAGGC 59.301 50.000 0.00 0.00 0.00 3.93
3805 3899 1.608025 GGCTGGAACTCATCACGTGAA 60.608 52.381 24.13 5.99 36.14 3.18
3845 3939 7.153217 TGCAATTAGGGCTTTAACTAGTTTC 57.847 36.000 14.49 1.23 0.00 2.78
3850 3944 3.261137 AGGGCTTTAACTAGTTTCGAGCT 59.739 43.478 24.37 12.12 0.00 4.09
3911 4006 2.696526 TCTGTCTGTTAGTGGAGGGT 57.303 50.000 0.00 0.00 0.00 4.34
4076 4172 7.905265 AGATCTCTTCTGATGAGAGTTGAAAA 58.095 34.615 22.59 3.91 42.85 2.29
4299 4395 6.145535 GGCATATTTGATACAGTTTGCTAGC 58.854 40.000 8.10 8.10 0.00 3.42
4357 4453 6.118852 TGGCATATTGCTAACATCTTGTGTA 58.881 36.000 0.00 0.00 44.28 2.90
4358 4454 6.601217 TGGCATATTGCTAACATCTTGTGTAA 59.399 34.615 0.00 0.00 44.28 2.41
4359 4455 7.121907 TGGCATATTGCTAACATCTTGTGTAAA 59.878 33.333 0.00 0.00 44.28 2.01
4360 4456 7.645340 GGCATATTGCTAACATCTTGTGTAAAG 59.355 37.037 0.00 0.00 44.28 1.85
4361 4457 8.397906 GCATATTGCTAACATCTTGTGTAAAGA 58.602 33.333 0.00 0.00 39.38 2.52
4362 4458 9.926751 CATATTGCTAACATCTTGTGTAAAGAG 57.073 33.333 0.00 0.00 41.14 2.85
4363 4459 7.986085 ATTGCTAACATCTTGTGTAAAGAGT 57.014 32.000 0.00 0.00 41.14 3.24
4364 4460 6.785488 TGCTAACATCTTGTGTAAAGAGTG 57.215 37.500 0.00 0.00 41.14 3.51
4365 4461 6.288294 TGCTAACATCTTGTGTAAAGAGTGT 58.712 36.000 0.00 0.00 41.14 3.55
4366 4462 6.202762 TGCTAACATCTTGTGTAAAGAGTGTG 59.797 38.462 0.00 0.00 41.14 3.82
4367 4463 6.202954 GCTAACATCTTGTGTAAAGAGTGTGT 59.797 38.462 0.00 0.00 41.14 3.72
4390 4486 1.180029 GAGCATGAATGGTTGGCAGT 58.820 50.000 0.00 0.00 38.85 4.40
4396 4492 2.665165 TGAATGGTTGGCAGTTCACTT 58.335 42.857 0.00 0.00 0.00 3.16
4448 4544 4.819105 TCAGTAAGTAACACTGGATGGG 57.181 45.455 2.90 0.00 42.98 4.00
4710 4811 7.667635 ACTCTCTCTGATCCATATTAATCGTCA 59.332 37.037 0.00 0.00 0.00 4.35
4756 4857 2.325761 AGTTGTACTAAAGCAGCGACG 58.674 47.619 0.00 0.00 0.00 5.12
4863 4964 0.036875 GCTCCAGTGTTGGCCTTACT 59.963 55.000 3.32 2.46 44.63 2.24
5049 5150 8.650143 TTCTGGCTATTCCTTTGTTTCTTATT 57.350 30.769 0.00 0.00 35.26 1.40
5305 5409 6.043327 TCATATTGAAATGTTAACGGCTCG 57.957 37.500 0.26 0.00 0.00 5.03
5459 5569 9.336171 AGACTGGAAGAAGAATCATTATTTAGC 57.664 33.333 0.00 0.00 37.43 3.09
5485 5595 6.639212 CAAATTTTGTTTCATTCAGGTCACG 58.361 36.000 0.78 0.00 0.00 4.35
5892 6007 0.529555 TTCGTTTTTGCCAGCTTGCC 60.530 50.000 7.41 0.00 0.00 4.52
5898 6013 2.141122 TTTGCCAGCTTGCCGTTAGC 62.141 55.000 7.41 0.00 44.14 3.09
5903 6018 3.815396 GCTTGCCGTTAGCCCAGC 61.815 66.667 0.00 0.00 42.71 4.85
5948 6411 7.929941 TTTTGGCATGTGTACATAGTTATGA 57.070 32.000 0.00 0.00 37.15 2.15
6005 6468 0.179000 AATGGCCAGGTAGCTTCTCG 59.821 55.000 13.05 0.00 0.00 4.04
6010 6473 1.870167 GCCAGGTAGCTTCTCGTATGC 60.870 57.143 0.00 0.00 0.00 3.14
6058 6521 6.862608 TGCAGTTGAAAGTATGTATTTTGCTG 59.137 34.615 0.00 0.00 0.00 4.41
6252 6715 6.493458 AGGTTTAAATGTTGTAGCCATTCACT 59.507 34.615 0.00 0.00 31.49 3.41
6311 6774 5.120830 GCCGTCATGCTAATCTAACTATTGG 59.879 44.000 0.00 0.00 0.00 3.16
6361 6824 7.686438 TCTCAGCTAGAACAAATTATTGCAA 57.314 32.000 0.00 0.00 40.34 4.08
6363 6826 8.742777 TCTCAGCTAGAACAAATTATTGCAATT 58.257 29.630 18.75 0.00 40.34 2.32
6479 6942 6.414079 CAATCGAAATTGGAATCGTCTACAG 58.586 40.000 0.00 0.00 38.91 2.74
6594 7057 7.488187 TGACTGCAATCTATAGAATCTTTGC 57.512 36.000 23.13 23.13 37.04 3.68
6833 7296 6.613699 ACATATAGCTTTGATTGGAATGGGA 58.386 36.000 0.00 0.00 0.00 4.37
6905 7368 6.061441 TGAACATGCTATACCAAAGGTATGG 58.939 40.000 16.84 15.06 46.91 2.74
7026 7489 2.039480 AGATCCTCTTCTTGTGCTTGCA 59.961 45.455 0.00 0.00 0.00 4.08
7047 7510 1.792006 ACTTTAGTGCGGGTCTTTCG 58.208 50.000 0.00 0.00 0.00 3.46
7118 7586 8.737168 AGAAATAGCAGTGAATAACATAAGCA 57.263 30.769 0.00 0.00 0.00 3.91
7121 7589 7.721286 ATAGCAGTGAATAACATAAGCACTC 57.279 36.000 0.00 0.00 37.69 3.51
7127 7599 7.228108 CAGTGAATAACATAAGCACTCCATCAT 59.772 37.037 0.00 0.00 37.69 2.45
7128 7600 7.443575 AGTGAATAACATAAGCACTCCATCATC 59.556 37.037 0.00 0.00 35.02 2.92
7435 7914 4.438744 GGGCATACATAAGTTCACTGTTGC 60.439 45.833 0.00 0.00 0.00 4.17
7467 7946 6.691255 TGAACACTTGGTATACCTAGGTTT 57.309 37.500 29.29 22.54 42.07 3.27
7611 8090 4.500499 AAGATTAGAGCATCACCAAGCT 57.500 40.909 0.00 0.00 45.25 3.74
7649 8128 6.649973 GCTCTAACAGATGATGTAGATGCAAT 59.350 38.462 0.00 0.00 43.00 3.56
7717 8396 2.746375 GCCGTCAGACCCCATGGAT 61.746 63.158 15.22 0.00 34.81 3.41
7734 8413 0.820871 GATGCCTCTTCAGACCTCGT 59.179 55.000 0.00 0.00 0.00 4.18
7736 8415 1.216710 GCCTCTTCAGACCTCGTGG 59.783 63.158 0.99 0.99 39.83 4.94
7796 8475 5.067283 GCCTCCACGGTGATGTAAATTTTAT 59.933 40.000 10.28 0.00 34.25 1.40
7835 8514 4.962995 TGGGAGGTTTTTGGTGATGTAAAA 59.037 37.500 0.00 0.00 0.00 1.52
7836 8515 5.425539 TGGGAGGTTTTTGGTGATGTAAAAA 59.574 36.000 0.00 0.00 34.45 1.94
7841 8520 6.352682 GTTTTTGGTGATGTAAAAACCCAC 57.647 37.500 12.01 0.00 44.72 4.61
7842 8521 5.941555 TTTTGGTGATGTAAAAACCCACT 57.058 34.783 0.00 0.00 32.70 4.00
7843 8522 5.941555 TTTGGTGATGTAAAAACCCACTT 57.058 34.783 0.00 0.00 32.70 3.16
7844 8523 5.941555 TTGGTGATGTAAAAACCCACTTT 57.058 34.783 0.00 0.00 32.70 2.66
7845 8524 5.941555 TGGTGATGTAAAAACCCACTTTT 57.058 34.783 0.00 0.00 33.13 2.27
7846 8525 6.301169 TGGTGATGTAAAAACCCACTTTTT 57.699 33.333 0.00 0.00 43.27 1.94
7847 8526 6.109359 TGGTGATGTAAAAACCCACTTTTTG 58.891 36.000 0.00 0.00 41.34 2.44
7848 8527 5.525745 GGTGATGTAAAAACCCACTTTTTGG 59.474 40.000 0.00 0.00 46.47 3.28
7849 8528 6.110033 GTGATGTAAAAACCCACTTTTTGGT 58.890 36.000 1.84 0.00 45.25 3.67
7850 8529 6.036626 GTGATGTAAAAACCCACTTTTTGGTG 59.963 38.462 1.84 0.00 45.25 4.17
7851 8530 5.485209 TGTAAAAACCCACTTTTTGGTGT 57.515 34.783 1.84 0.00 45.25 4.16
7852 8531 5.238583 TGTAAAAACCCACTTTTTGGTGTG 58.761 37.500 1.84 0.00 45.25 3.82
7854 8533 5.485209 AAAAACCCACTTTTTGGTGTGTA 57.515 34.783 0.00 0.00 45.25 2.90
7856 8535 5.485209 AAACCCACTTTTTGGTGTGTAAA 57.515 34.783 0.00 0.00 45.25 2.01
7858 8537 5.685520 ACCCACTTTTTGGTGTGTAAATT 57.314 34.783 0.00 0.00 45.25 1.82
7859 8538 6.056090 ACCCACTTTTTGGTGTGTAAATTT 57.944 33.333 0.00 0.00 45.25 1.82
7861 8540 7.621796 ACCCACTTTTTGGTGTGTAAATTTTA 58.378 30.769 0.00 0.00 45.25 1.52
7862 8541 7.549842 ACCCACTTTTTGGTGTGTAAATTTTAC 59.450 33.333 11.57 11.57 45.25 2.01
7863 8542 7.766738 CCCACTTTTTGGTGTGTAAATTTTACT 59.233 33.333 17.70 0.00 45.25 2.24
7864 8543 9.157104 CCACTTTTTGGTGTGTAAATTTTACTT 57.843 29.630 17.70 0.00 41.10 2.24
7865 8544 9.965748 CACTTTTTGGTGTGTAAATTTTACTTG 57.034 29.630 17.70 2.44 33.04 3.16
7866 8545 9.930693 ACTTTTTGGTGTGTAAATTTTACTTGA 57.069 25.926 17.70 0.00 0.00 3.02
7869 8548 7.995463 TTGGTGTGTAAATTTTACTTGAAGC 57.005 32.000 17.70 11.27 0.00 3.86
7870 8549 6.202937 TGGTGTGTAAATTTTACTTGAAGCG 58.797 36.000 17.70 0.00 0.00 4.68
7871 8550 6.038382 TGGTGTGTAAATTTTACTTGAAGCGA 59.962 34.615 17.70 0.00 0.00 4.93
7872 8551 7.081976 GGTGTGTAAATTTTACTTGAAGCGAT 58.918 34.615 17.70 0.00 0.00 4.58
7873 8552 7.060633 GGTGTGTAAATTTTACTTGAAGCGATG 59.939 37.037 17.70 0.00 0.00 3.84
7874 8553 7.589954 GTGTGTAAATTTTACTTGAAGCGATGT 59.410 33.333 17.70 0.00 0.00 3.06
7875 8554 8.775527 TGTGTAAATTTTACTTGAAGCGATGTA 58.224 29.630 17.70 0.00 0.00 2.29
7876 8555 9.047871 GTGTAAATTTTACTTGAAGCGATGTAC 57.952 33.333 17.70 2.53 0.00 2.90
7877 8556 8.995220 TGTAAATTTTACTTGAAGCGATGTACT 58.005 29.630 17.70 0.00 0.00 2.73
7878 8557 9.474249 GTAAATTTTACTTGAAGCGATGTACTC 57.526 33.333 11.27 0.00 0.00 2.59
7879 8558 6.663944 ATTTTACTTGAAGCGATGTACTCC 57.336 37.500 0.00 0.00 0.00 3.85
7880 8559 2.674796 ACTTGAAGCGATGTACTCCC 57.325 50.000 0.00 0.00 0.00 4.30
7881 8560 2.180276 ACTTGAAGCGATGTACTCCCT 58.820 47.619 0.00 0.00 0.00 4.20
7882 8561 2.166664 ACTTGAAGCGATGTACTCCCTC 59.833 50.000 0.00 0.00 0.00 4.30
7883 8562 1.112113 TGAAGCGATGTACTCCCTCC 58.888 55.000 0.00 0.00 0.00 4.30
7884 8563 0.030908 GAAGCGATGTACTCCCTCCG 59.969 60.000 0.00 0.00 0.00 4.63
7885 8564 0.683504 AAGCGATGTACTCCCTCCGT 60.684 55.000 0.00 0.00 0.00 4.69
7886 8565 1.102222 AGCGATGTACTCCCTCCGTC 61.102 60.000 0.00 0.00 0.00 4.79
7887 8566 1.102222 GCGATGTACTCCCTCCGTCT 61.102 60.000 0.00 0.00 0.00 4.18
7888 8567 0.945813 CGATGTACTCCCTCCGTCTC 59.054 60.000 0.00 0.00 0.00 3.36
7889 8568 1.746171 CGATGTACTCCCTCCGTCTCA 60.746 57.143 0.00 0.00 0.00 3.27
7890 8569 2.376109 GATGTACTCCCTCCGTCTCAA 58.624 52.381 0.00 0.00 0.00 3.02
7891 8570 2.297698 TGTACTCCCTCCGTCTCAAA 57.702 50.000 0.00 0.00 0.00 2.69
7892 8571 2.600790 TGTACTCCCTCCGTCTCAAAA 58.399 47.619 0.00 0.00 0.00 2.44
7893 8572 3.170717 TGTACTCCCTCCGTCTCAAAAT 58.829 45.455 0.00 0.00 0.00 1.82
7894 8573 4.346730 TGTACTCCCTCCGTCTCAAAATA 58.653 43.478 0.00 0.00 0.00 1.40
7895 8574 4.773674 TGTACTCCCTCCGTCTCAAAATAA 59.226 41.667 0.00 0.00 0.00 1.40
7896 8575 4.473477 ACTCCCTCCGTCTCAAAATAAG 57.527 45.455 0.00 0.00 0.00 1.73
7897 8576 3.838903 ACTCCCTCCGTCTCAAAATAAGT 59.161 43.478 0.00 0.00 0.00 2.24
7898 8577 4.184629 CTCCCTCCGTCTCAAAATAAGTG 58.815 47.826 0.00 0.00 0.00 3.16
7899 8578 3.581332 TCCCTCCGTCTCAAAATAAGTGT 59.419 43.478 0.00 0.00 0.00 3.55
7900 8579 3.933332 CCCTCCGTCTCAAAATAAGTGTC 59.067 47.826 0.00 0.00 0.00 3.67
7901 8580 4.322801 CCCTCCGTCTCAAAATAAGTGTCT 60.323 45.833 0.00 0.00 0.00 3.41
7902 8581 4.865365 CCTCCGTCTCAAAATAAGTGTCTC 59.135 45.833 0.00 0.00 0.00 3.36
7903 8582 4.482386 TCCGTCTCAAAATAAGTGTCTCG 58.518 43.478 0.00 0.00 0.00 4.04
7904 8583 4.216902 TCCGTCTCAAAATAAGTGTCTCGA 59.783 41.667 0.00 0.00 0.00 4.04
7905 8584 4.323868 CCGTCTCAAAATAAGTGTCTCGAC 59.676 45.833 0.00 0.00 0.00 4.20
7906 8585 5.154932 CGTCTCAAAATAAGTGTCTCGACT 58.845 41.667 0.00 0.00 0.00 4.18
7907 8586 5.629849 CGTCTCAAAATAAGTGTCTCGACTT 59.370 40.000 0.00 0.00 39.54 3.01
7908 8587 6.144080 CGTCTCAAAATAAGTGTCTCGACTTT 59.856 38.462 0.00 0.00 37.38 2.66
7909 8588 7.284351 GTCTCAAAATAAGTGTCTCGACTTTG 58.716 38.462 0.00 0.84 37.38 2.77
7910 8589 6.984474 TCTCAAAATAAGTGTCTCGACTTTGT 59.016 34.615 0.00 0.00 37.38 2.83
7911 8590 8.139350 TCTCAAAATAAGTGTCTCGACTTTGTA 58.861 33.333 0.00 0.00 37.38 2.41
7912 8591 8.068893 TCAAAATAAGTGTCTCGACTTTGTAC 57.931 34.615 0.00 0.00 37.38 2.90
7913 8592 7.924412 TCAAAATAAGTGTCTCGACTTTGTACT 59.076 33.333 0.00 0.00 37.38 2.73
7914 8593 9.188588 CAAAATAAGTGTCTCGACTTTGTACTA 57.811 33.333 0.00 0.00 37.38 1.82
7915 8594 9.754382 AAAATAAGTGTCTCGACTTTGTACTAA 57.246 29.630 0.00 0.00 37.38 2.24
7916 8595 8.739649 AATAAGTGTCTCGACTTTGTACTAAC 57.260 34.615 0.00 0.00 37.38 2.34
7917 8596 6.388435 AAGTGTCTCGACTTTGTACTAACT 57.612 37.500 0.00 0.00 31.92 2.24
7918 8597 6.388435 AGTGTCTCGACTTTGTACTAACTT 57.612 37.500 0.00 0.00 0.00 2.66
7919 8598 6.803642 AGTGTCTCGACTTTGTACTAACTTT 58.196 36.000 0.00 0.00 0.00 2.66
7920 8599 7.934457 AGTGTCTCGACTTTGTACTAACTTTA 58.066 34.615 0.00 0.00 0.00 1.85
7921 8600 8.074972 AGTGTCTCGACTTTGTACTAACTTTAG 58.925 37.037 0.00 0.00 36.82 1.85
7922 8601 7.859875 GTGTCTCGACTTTGTACTAACTTTAGT 59.140 37.037 6.85 6.85 45.39 2.24
7923 8602 9.056005 TGTCTCGACTTTGTACTAACTTTAGTA 57.944 33.333 4.98 4.98 43.36 1.82
8044 8724 1.302033 GGAGGTATGCATCGGCTGG 60.302 63.158 0.19 0.00 41.91 4.85
8045 8725 1.302033 GAGGTATGCATCGGCTGGG 60.302 63.158 0.19 0.00 41.91 4.45
8046 8726 1.758440 GAGGTATGCATCGGCTGGGA 61.758 60.000 0.19 0.00 41.91 4.37
8047 8727 1.130054 AGGTATGCATCGGCTGGGAT 61.130 55.000 0.19 0.00 41.91 3.85
8298 9028 6.798476 CACTGACATTTGTTTGCAGTATACTG 59.202 38.462 25.68 25.68 46.40 2.74
8310 9040 5.804639 TGCAGTATACTGTCAAATGAAGGT 58.195 37.500 28.95 0.00 45.45 3.50
8388 9118 5.413833 TGTTGAGAGATTTCTGAAGGAATGC 59.586 40.000 0.00 0.00 32.53 3.56
8461 9191 1.287425 GAAAGGACCATAAGACGCGG 58.713 55.000 12.47 0.00 0.00 6.46
8462 9192 0.107848 AAAGGACCATAAGACGCGGG 60.108 55.000 12.47 2.56 0.00 6.13
8611 9344 1.402613 GCCGTTGTACTCTCTCTCTCC 59.597 57.143 0.00 0.00 0.00 3.71
9107 10673 4.814294 GTCCCGCGCCTCGACAAT 62.814 66.667 0.00 0.00 41.67 2.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 9.770097 CTATGATACACTTCATATGTCCAGTTT 57.230 33.333 1.90 0.40 37.81 2.66
64 65 0.995675 AAGGCTGGCCCCAGTGATAT 60.996 55.000 15.28 0.00 45.24 1.63
120 121 1.367659 GTGTGCAGGCTGAAGATCTC 58.632 55.000 20.86 1.35 0.00 2.75
139 140 1.740025 GATTGAGAGTTTTCTGGCCGG 59.260 52.381 4.71 4.71 32.53 6.13
141 142 2.751806 CCTGATTGAGAGTTTTCTGGCC 59.248 50.000 0.00 0.00 32.53 5.36
180 188 5.786311 TGTGTACTGTACATTCTAACCCAC 58.214 41.667 22.21 7.30 41.34 4.61
181 189 6.422344 TTGTGTACTGTACATTCTAACCCA 57.578 37.500 22.21 10.89 41.34 4.51
182 190 7.733402 TTTTGTGTACTGTACATTCTAACCC 57.267 36.000 22.21 8.59 41.34 4.11
275 288 5.180868 CAGGAAAATGCTGAGCAGATATACC 59.819 44.000 14.36 11.09 43.65 2.73
392 407 1.818060 CAGTTGGCCGGATTTTGATCA 59.182 47.619 5.05 0.00 0.00 2.92
404 419 2.221906 CTTGGATGCAGCAGTTGGCC 62.222 60.000 3.51 0.00 46.50 5.36
429 444 1.762957 CCATCCCTGTTCGTATGAGGT 59.237 52.381 0.00 0.00 0.00 3.85
431 446 3.555795 CCATCCATCCCTGTTCGTATGAG 60.556 52.174 0.00 0.00 0.00 2.90
432 447 2.368548 CCATCCATCCCTGTTCGTATGA 59.631 50.000 0.00 0.00 0.00 2.15
568 588 2.418910 GCTGTCGAGGCTGCTAGGA 61.419 63.158 0.00 0.00 0.00 2.94
909 945 2.833582 TCCCAGCCGTCCGATCTC 60.834 66.667 0.00 0.00 0.00 2.75
910 946 2.835431 CTCCCAGCCGTCCGATCT 60.835 66.667 0.00 0.00 0.00 2.75
934 970 1.227823 AGGCTACAAGCACGTGCAA 60.228 52.632 39.21 21.35 44.75 4.08
953 989 1.453928 GGGGCCAAAAGAGGATCCG 60.454 63.158 4.39 0.00 33.66 4.18
991 1027 2.894387 GAGCGCCATGAGGTCTGC 60.894 66.667 2.29 0.00 37.19 4.26
1245 1284 3.984200 CTCGTCGGCCGGAAACTCC 62.984 68.421 27.83 3.73 37.11 3.85
1271 1310 3.622060 AACCCATCCTTCACGGCGG 62.622 63.158 13.24 0.00 0.00 6.13
1277 1316 4.586841 CCAAGTAAACAAACCCATCCTTCA 59.413 41.667 0.00 0.00 0.00 3.02
1288 1327 3.132160 TCGCGTCATCCAAGTAAACAAA 58.868 40.909 5.77 0.00 0.00 2.83
1302 1341 1.638388 AATCGACCGTACTCGCGTCA 61.638 55.000 5.77 0.00 37.22 4.35
1305 1344 0.983964 CGTAATCGACCGTACTCGCG 60.984 60.000 0.00 0.00 39.71 5.87
1314 1353 1.134560 AGCTCTTCACCGTAATCGACC 59.865 52.381 0.00 0.00 39.71 4.79
1416 1455 2.100631 GCCGACCAACGAGTCCATG 61.101 63.158 0.00 0.00 45.77 3.66
1479 1518 2.594592 AGCCTTCCACCGCACAAC 60.595 61.111 0.00 0.00 0.00 3.32
1502 1541 7.254286 GCAACAGTAACGGAAAATTGACAAAAT 60.254 33.333 0.00 0.00 0.00 1.82
1507 1546 4.675114 CAGCAACAGTAACGGAAAATTGAC 59.325 41.667 0.00 0.00 0.00 3.18
1508 1547 4.791411 GCAGCAACAGTAACGGAAAATTGA 60.791 41.667 0.00 0.00 0.00 2.57
1509 1548 3.425193 GCAGCAACAGTAACGGAAAATTG 59.575 43.478 0.00 0.00 0.00 2.32
1510 1549 3.317993 AGCAGCAACAGTAACGGAAAATT 59.682 39.130 0.00 0.00 0.00 1.82
1511 1550 2.884639 AGCAGCAACAGTAACGGAAAAT 59.115 40.909 0.00 0.00 0.00 1.82
1512 1551 2.032799 CAGCAGCAACAGTAACGGAAAA 59.967 45.455 0.00 0.00 0.00 2.29
1513 1552 1.601903 CAGCAGCAACAGTAACGGAAA 59.398 47.619 0.00 0.00 0.00 3.13
1515 1554 1.227999 GCAGCAGCAACAGTAACGGA 61.228 55.000 0.00 0.00 41.58 4.69
1516 1555 1.207593 GCAGCAGCAACAGTAACGG 59.792 57.895 0.00 0.00 41.58 4.44
1517 1556 1.207593 GGCAGCAGCAACAGTAACG 59.792 57.895 2.65 0.00 44.61 3.18
1533 1578 2.685897 TCAAATTAACACCGGCTATGGC 59.314 45.455 0.00 0.00 37.82 4.40
1579 1624 1.196354 GAGCCATGTAATCGCATGAGC 59.804 52.381 0.00 8.81 46.65 4.26
1610 1655 2.443957 GCCACAGCACACGCAAGTAC 62.444 60.000 0.00 0.00 45.54 2.73
1615 1660 1.811645 TACTAGCCACAGCACACGCA 61.812 55.000 0.00 0.00 43.56 5.24
1628 1673 0.249114 GAGCGACAAGGGCTACTAGC 60.249 60.000 0.00 0.00 41.72 3.42
1631 1676 0.612174 TCTGAGCGACAAGGGCTACT 60.612 55.000 0.00 0.00 41.72 2.57
1634 1679 1.195115 TATTCTGAGCGACAAGGGCT 58.805 50.000 0.00 0.00 45.00 5.19
1636 1681 1.869767 GCATATTCTGAGCGACAAGGG 59.130 52.381 0.00 0.00 0.00 3.95
1640 1685 1.756538 TCTGGCATATTCTGAGCGACA 59.243 47.619 0.00 0.00 0.00 4.35
1641 1686 2.515926 TCTGGCATATTCTGAGCGAC 57.484 50.000 0.00 0.00 0.00 5.19
1653 1698 6.753913 TCTTAGACATAAAGGATCTGGCAT 57.246 37.500 0.00 0.00 0.00 4.40
1704 1749 7.473735 TTGTTATCCACCTGCAATGAAAATA 57.526 32.000 0.00 0.00 0.00 1.40
1790 1835 2.083774 TGGCCGATTTTAGCAGTCTTG 58.916 47.619 0.00 0.00 0.00 3.02
1902 1947 1.227176 GGTCTGCGGAATCGGGTAC 60.227 63.158 0.00 0.00 36.79 3.34
1913 1958 3.498397 AGATAAAACAACAGTGGTCTGCG 59.502 43.478 0.00 0.00 44.77 5.18
1941 1990 8.458843 TGAATCCGGAGATTTAAGAACAATTTC 58.541 33.333 11.34 3.27 42.93 2.17
1947 1996 8.874816 GCTATATGAATCCGGAGATTTAAGAAC 58.125 37.037 11.34 0.00 42.93 3.01
2023 2074 9.405587 GGAACATTTCGATTTCAAGAATACAAA 57.594 29.630 0.00 0.00 0.00 2.83
2026 2077 9.626045 AAAGGAACATTTCGATTTCAAGAATAC 57.374 29.630 0.00 0.00 0.00 1.89
2049 2100 2.725221 ATGGGAGGCTCAGCTAAAAG 57.275 50.000 17.69 0.00 0.00 2.27
2068 2119 9.868160 TCAATCAGACAGGAATAGAATAGACTA 57.132 33.333 0.00 0.00 0.00 2.59
2309 2360 7.789759 CGTAGAAGATTTTATCACAAGATTCGC 59.210 37.037 0.00 0.00 35.67 4.70
2368 2419 6.993079 ACAAGGGTTTCTTTGGATAATCAAC 58.007 36.000 0.00 0.00 32.41 3.18
2375 2426 6.993079 GAAACATACAAGGGTTTCTTTGGAT 58.007 36.000 9.34 0.00 45.78 3.41
2384 2435 5.454966 AGGAACAAGAAACATACAAGGGTT 58.545 37.500 0.00 0.00 0.00 4.11
2385 2436 5.061721 AGGAACAAGAAACATACAAGGGT 57.938 39.130 0.00 0.00 0.00 4.34
2428 2479 8.174422 GCTCTTTTAATTGCTTTTGAAACAACA 58.826 29.630 0.00 0.00 0.00 3.33
2456 2507 5.072741 AGTGCAGAATTAGTTGGTGTTGAT 58.927 37.500 0.00 0.00 0.00 2.57
2517 2568 6.318648 CAGTATAAAGCAAGGGAACTGCATAA 59.681 38.462 0.00 0.00 42.68 1.90
2715 2766 9.357652 GCCTATACAACATAAAATATGCATTGG 57.642 33.333 3.54 0.00 0.00 3.16
2772 2823 4.141158 AGCCTTTTCCATTCTCCCGATAAT 60.141 41.667 0.00 0.00 0.00 1.28
2787 2838 3.801594 TGAAATGAAACGCAAGCCTTTTC 59.198 39.130 6.78 6.78 45.62 2.29
2793 2844 3.316283 TCCAATGAAATGAAACGCAAGC 58.684 40.909 0.00 0.00 45.62 4.01
2829 2880 7.889589 ATGGAAATTTAAGCTGCAAAACTAC 57.110 32.000 1.02 0.00 0.00 2.73
2891 2942 7.382898 TCCGTTGGATCATGATCGAAATTATA 58.617 34.615 28.10 13.56 37.30 0.98
2989 3040 4.321718 CTCAGCTCATCAACTTTCCTTCA 58.678 43.478 0.00 0.00 0.00 3.02
3154 3205 5.197451 ACCTTGAACATTTTCCACTACACA 58.803 37.500 0.00 0.00 0.00 3.72
3230 3320 3.443681 CCGCCCTGTAATTGTCAAGAAAT 59.556 43.478 0.00 0.00 0.00 2.17
3259 3351 6.796705 AACTCGGTCAAGTTATTAAACCAG 57.203 37.500 0.00 0.00 37.71 4.00
3314 3406 0.324943 TGGAGCCCAGCAACTAAGAC 59.675 55.000 0.00 0.00 0.00 3.01
3338 3430 6.777213 ACAGTAGAGTACCTGGACATTTAG 57.223 41.667 0.00 0.00 0.00 1.85
3472 3564 7.984617 GTGTAACATAACCCATATTTGGCATTT 59.015 33.333 0.00 0.00 38.17 2.32
3585 3678 7.328493 CGACTCCCCAATTTAAAATTTTGACTC 59.672 37.037 13.76 0.00 0.00 3.36
3643 3736 4.447389 TCACACGATGTAAGACAACACATG 59.553 41.667 0.00 0.00 35.55 3.21
3720 3813 5.069516 GTCCAATATTCCAAGACATGCCAAT 59.930 40.000 0.00 0.00 0.00 3.16
3761 3854 3.838317 ACAACTCCCAGTATAGCAGTTGA 59.162 43.478 15.21 0.00 44.47 3.18
3787 3881 3.124128 CACATTCACGTGATGAGTTCCAG 59.876 47.826 20.80 3.10 38.99 3.86
3845 3939 3.589988 ACACCAACTTCTAATCAGCTCG 58.410 45.455 0.00 0.00 0.00 5.03
3911 4006 8.212995 TGATAGCTCAAACTTTGATATCATGGA 58.787 33.333 16.90 0.00 37.02 3.41
4036 4132 8.081633 CAGAAGAGATCTCGCATATAAACTCTT 58.918 37.037 16.97 0.00 43.15 2.85
4076 4172 7.819900 AGTTAGCGATGAAAAGAACAGATAACT 59.180 33.333 0.00 0.00 0.00 2.24
4095 4191 5.833082 AGTAGTGTTATCATCCAGTTAGCG 58.167 41.667 0.00 0.00 0.00 4.26
4357 4453 6.072286 CCATTCATGCTCTTTACACACTCTTT 60.072 38.462 0.00 0.00 0.00 2.52
4358 4454 5.413833 CCATTCATGCTCTTTACACACTCTT 59.586 40.000 0.00 0.00 0.00 2.85
4359 4455 4.940046 CCATTCATGCTCTTTACACACTCT 59.060 41.667 0.00 0.00 0.00 3.24
4360 4456 4.697352 ACCATTCATGCTCTTTACACACTC 59.303 41.667 0.00 0.00 0.00 3.51
4361 4457 4.655963 ACCATTCATGCTCTTTACACACT 58.344 39.130 0.00 0.00 0.00 3.55
4362 4458 5.156355 CAACCATTCATGCTCTTTACACAC 58.844 41.667 0.00 0.00 0.00 3.82
4363 4459 4.218200 CCAACCATTCATGCTCTTTACACA 59.782 41.667 0.00 0.00 0.00 3.72
4364 4460 4.737054 CCAACCATTCATGCTCTTTACAC 58.263 43.478 0.00 0.00 0.00 2.90
4365 4461 3.193267 GCCAACCATTCATGCTCTTTACA 59.807 43.478 0.00 0.00 0.00 2.41
4366 4462 3.193267 TGCCAACCATTCATGCTCTTTAC 59.807 43.478 0.00 0.00 0.00 2.01
4367 4463 3.429492 TGCCAACCATTCATGCTCTTTA 58.571 40.909 0.00 0.00 0.00 1.85
4390 4486 7.865385 GTGAAAATATGTACTTTGCCAAGTGAA 59.135 33.333 13.20 1.93 43.54 3.18
4396 4492 8.856153 TTCTAGTGAAAATATGTACTTTGCCA 57.144 30.769 0.00 0.00 0.00 4.92
4437 4533 0.106268 TGCACAAACCCATCCAGTGT 60.106 50.000 0.00 0.00 32.99 3.55
4448 4544 3.744238 AAACCCCATAAGTGCACAAAC 57.256 42.857 21.04 0.00 0.00 2.93
4488 4584 4.275936 GCAGAAAACATGTGGAGTGTACTT 59.724 41.667 0.00 0.00 0.00 2.24
4491 4587 2.805671 CGCAGAAAACATGTGGAGTGTA 59.194 45.455 0.00 0.00 0.00 2.90
4607 4708 6.412362 TGCCCATAACAGTACAACATTTTT 57.588 33.333 0.00 0.00 0.00 1.94
4608 4709 6.397272 CATGCCCATAACAGTACAACATTTT 58.603 36.000 0.00 0.00 0.00 1.82
4688 4789 7.597386 CAGTGACGATTAATATGGATCAGAGA 58.403 38.462 0.00 0.00 0.00 3.10
4706 4807 8.684973 ACTAAAGTTATACTAAAGCAGTGACG 57.315 34.615 0.00 0.00 38.24 4.35
4756 4857 5.941555 ACTCCCTCCGATCCATATTAATC 57.058 43.478 0.00 0.00 0.00 1.75
5049 5150 0.839277 CCTGAGGGACCACATATGCA 59.161 55.000 1.58 0.00 33.58 3.96
5241 5342 9.398170 CCAATTGCAGTATCTTTAATTTATCCG 57.602 33.333 0.00 0.00 0.00 4.18
5305 5409 9.788960 AAGAACTTTGATTACTTCAAACAACTC 57.211 29.630 0.00 0.00 46.80 3.01
5331 5435 4.743018 GCTTAAAGCTCTGCCCCA 57.257 55.556 0.00 0.00 38.45 4.96
5353 5457 9.654663 AACTCTTAGTACAACATCATTCCTAAC 57.345 33.333 0.00 0.00 0.00 2.34
5411 5521 5.009610 TCTGTTGGATGATGATGCATGATTG 59.990 40.000 2.46 0.00 28.78 2.67
5459 5569 5.233902 TGACCTGAATGAAACAAAATTTGCG 59.766 36.000 5.52 0.00 0.00 4.85
5517 5627 3.887716 CCCCTGCCAATCAAAGAGAATAG 59.112 47.826 0.00 0.00 0.00 1.73
5701 5816 2.235898 TGGTGGGCCTTAAAATGCATTC 59.764 45.455 13.38 0.00 35.27 2.67
5803 5918 6.118170 CAGATCTGTTATGACCCATGTTCTT 58.882 40.000 14.95 0.00 0.00 2.52
5892 6007 2.838736 AGAACATATGCTGGGCTAACG 58.161 47.619 1.58 0.00 0.00 3.18
5898 6013 6.015095 TCACTGATACTAGAACATATGCTGGG 60.015 42.308 1.58 0.00 0.00 4.45
6010 6473 9.562583 TGCACAGTTAAGTTTGTTTAAGTAAAG 57.437 29.630 0.00 0.00 0.00 1.85
6311 6774 6.163476 GGAACAGGATGGAAAATTACCAAAC 58.837 40.000 8.09 5.12 43.62 2.93
6387 6850 4.217118 AGAGAATAAACCAAACTGCAGCAG 59.783 41.667 21.54 21.54 37.52 4.24
6479 6942 5.705609 TCCTCAAACATAAACTTTGGAGC 57.294 39.130 0.00 0.00 30.78 4.70
6511 6974 6.485984 ACTCAGCAGATACATTTTCATCCATC 59.514 38.462 0.00 0.00 0.00 3.51
6643 7106 7.413475 AATATTGTAACGCTTGCTATCAGAG 57.587 36.000 0.00 0.00 0.00 3.35
6833 7296 7.836842 ACAACTTATTTGAGAACAAGGTTTGT 58.163 30.769 0.00 0.00 41.35 2.83
6905 7368 9.601217 AGTACCAAAGAACATATGAGATTACAC 57.399 33.333 10.38 0.00 0.00 2.90
7026 7489 3.518590 CGAAAGACCCGCACTAAAGTAT 58.481 45.455 0.00 0.00 0.00 2.12
7047 7510 4.811557 AGATACTCTACCTGATTTTTGCGC 59.188 41.667 0.00 0.00 0.00 6.09
7050 7513 8.660373 GTGAACAGATACTCTACCTGATTTTTG 58.340 37.037 0.00 0.00 0.00 2.44
7070 7533 5.606348 AATGGCTTAAAAACAGGTGAACA 57.394 34.783 0.00 0.00 0.00 3.18
7118 7586 3.649981 CCTACAATGGGAGATGATGGAGT 59.350 47.826 0.00 0.00 0.00 3.85
7411 7890 4.568072 ACAGTGAACTTATGTATGCCCA 57.432 40.909 0.00 0.00 0.00 5.36
7416 7895 6.370593 CAAACGCAACAGTGAACTTATGTAT 58.629 36.000 0.00 0.00 0.00 2.29
7435 7914 3.224884 ACCAAGTGTTCAAACCAAACG 57.775 42.857 0.00 0.00 0.00 3.60
7467 7946 2.323968 TGCAGCTGACACTACAACAA 57.676 45.000 20.43 0.00 0.00 2.83
7514 7993 6.299805 AGCAGATAACCTGAATAACAGTGA 57.700 37.500 0.00 0.00 45.78 3.41
7581 8060 4.156556 TGATGCTCTAATCTTTGTGTTGGC 59.843 41.667 0.00 0.00 0.00 4.52
7611 8090 2.687425 TGTTAGAGCAGCTTTTTGTGCA 59.313 40.909 0.00 0.00 42.47 4.57
7660 8143 4.452733 CGGCGGGAAGGTGTCTCC 62.453 72.222 0.00 0.00 0.00 3.71
7717 8396 1.536073 CCACGAGGTCTGAAGAGGCA 61.536 60.000 0.00 0.00 0.00 4.75
7756 8435 2.676471 GCGGCCATGGTGAGGTTT 60.676 61.111 14.67 0.00 0.00 3.27
7757 8436 4.740822 GGCGGCCATGGTGAGGTT 62.741 66.667 15.62 0.00 0.00 3.50
7796 8475 3.455910 CCTCCCAACTCCAACAGATGATA 59.544 47.826 0.00 0.00 0.00 2.15
7839 8518 9.965748 CAAGTAAAATTTACACACCAAAAAGTG 57.034 29.630 17.00 0.00 43.65 3.16
7840 8519 9.930693 TCAAGTAAAATTTACACACCAAAAAGT 57.069 25.926 17.00 0.00 0.00 2.66
7843 8522 8.874816 GCTTCAAGTAAAATTTACACACCAAAA 58.125 29.630 17.00 2.52 0.00 2.44
7844 8523 7.221067 CGCTTCAAGTAAAATTTACACACCAAA 59.779 33.333 17.00 3.37 0.00 3.28
7845 8524 6.693545 CGCTTCAAGTAAAATTTACACACCAA 59.306 34.615 17.00 3.15 0.00 3.67
7846 8525 6.038382 TCGCTTCAAGTAAAATTTACACACCA 59.962 34.615 17.00 0.00 0.00 4.17
7847 8526 6.432107 TCGCTTCAAGTAAAATTTACACACC 58.568 36.000 17.00 1.33 0.00 4.16
7848 8527 7.589954 ACATCGCTTCAAGTAAAATTTACACAC 59.410 33.333 17.00 0.00 0.00 3.82
7849 8528 7.644490 ACATCGCTTCAAGTAAAATTTACACA 58.356 30.769 17.00 0.00 0.00 3.72
7850 8529 9.047871 GTACATCGCTTCAAGTAAAATTTACAC 57.952 33.333 17.00 0.00 0.00 2.90
7851 8530 8.995220 AGTACATCGCTTCAAGTAAAATTTACA 58.005 29.630 17.00 0.00 0.00 2.41
7852 8531 9.474249 GAGTACATCGCTTCAAGTAAAATTTAC 57.526 33.333 7.75 7.75 0.00 2.01
7854 8533 7.361799 GGGAGTACATCGCTTCAAGTAAAATTT 60.362 37.037 0.00 0.00 37.86 1.82
7856 8535 5.585047 GGGAGTACATCGCTTCAAGTAAAAT 59.415 40.000 0.00 0.00 37.86 1.82
7858 8537 4.501071 GGGAGTACATCGCTTCAAGTAAA 58.499 43.478 0.00 0.00 37.86 2.01
7859 8538 4.119442 GGGAGTACATCGCTTCAAGTAA 57.881 45.455 0.00 0.00 37.86 2.24
7861 8540 2.674796 GGGAGTACATCGCTTCAAGT 57.325 50.000 0.00 0.00 37.86 3.16
7868 8547 1.102222 AGACGGAGGGAGTACATCGC 61.102 60.000 0.00 0.00 41.11 4.58
7869 8548 0.945813 GAGACGGAGGGAGTACATCG 59.054 60.000 0.00 0.00 0.00 3.84
7870 8549 2.054232 TGAGACGGAGGGAGTACATC 57.946 55.000 0.00 0.00 0.00 3.06
7871 8550 2.526888 TTGAGACGGAGGGAGTACAT 57.473 50.000 0.00 0.00 0.00 2.29
7872 8551 2.297698 TTTGAGACGGAGGGAGTACA 57.702 50.000 0.00 0.00 0.00 2.90
7873 8552 3.889520 ATTTTGAGACGGAGGGAGTAC 57.110 47.619 0.00 0.00 0.00 2.73
7874 8553 5.021458 ACTTATTTTGAGACGGAGGGAGTA 58.979 41.667 0.00 0.00 0.00 2.59
7875 8554 3.838903 ACTTATTTTGAGACGGAGGGAGT 59.161 43.478 0.00 0.00 0.00 3.85
7876 8555 4.184629 CACTTATTTTGAGACGGAGGGAG 58.815 47.826 0.00 0.00 0.00 4.30
7877 8556 3.581332 ACACTTATTTTGAGACGGAGGGA 59.419 43.478 0.00 0.00 0.00 4.20
7878 8557 3.933332 GACACTTATTTTGAGACGGAGGG 59.067 47.826 0.00 0.00 0.00 4.30
7879 8558 4.822026 AGACACTTATTTTGAGACGGAGG 58.178 43.478 0.00 0.00 0.00 4.30
7880 8559 4.559251 CGAGACACTTATTTTGAGACGGAG 59.441 45.833 0.00 0.00 0.00 4.63
7881 8560 4.216902 TCGAGACACTTATTTTGAGACGGA 59.783 41.667 0.00 0.00 0.00 4.69
7882 8561 4.323868 GTCGAGACACTTATTTTGAGACGG 59.676 45.833 0.00 0.00 0.00 4.79
7883 8562 5.154932 AGTCGAGACACTTATTTTGAGACG 58.845 41.667 5.99 0.00 0.00 4.18
7884 8563 7.042658 ACAAAGTCGAGACACTTATTTTGAGAC 60.043 37.037 15.46 0.00 35.45 3.36
7885 8564 6.984474 ACAAAGTCGAGACACTTATTTTGAGA 59.016 34.615 15.46 0.00 35.45 3.27
7886 8565 7.178712 ACAAAGTCGAGACACTTATTTTGAG 57.821 36.000 15.46 0.00 35.45 3.02
7887 8566 7.924412 AGTACAAAGTCGAGACACTTATTTTGA 59.076 33.333 15.46 3.02 35.45 2.69
7888 8567 8.073355 AGTACAAAGTCGAGACACTTATTTTG 57.927 34.615 5.99 8.46 35.45 2.44
7889 8568 9.754382 TTAGTACAAAGTCGAGACACTTATTTT 57.246 29.630 5.99 0.00 35.45 1.82
7890 8569 9.189723 GTTAGTACAAAGTCGAGACACTTATTT 57.810 33.333 5.99 0.00 35.45 1.40
7891 8570 8.574737 AGTTAGTACAAAGTCGAGACACTTATT 58.425 33.333 5.99 0.00 35.45 1.40
7892 8571 8.108551 AGTTAGTACAAAGTCGAGACACTTAT 57.891 34.615 5.99 0.00 35.45 1.73
7893 8572 7.502120 AGTTAGTACAAAGTCGAGACACTTA 57.498 36.000 5.99 0.00 35.45 2.24
7894 8573 6.388435 AGTTAGTACAAAGTCGAGACACTT 57.612 37.500 5.99 0.00 38.30 3.16
7895 8574 6.388435 AAGTTAGTACAAAGTCGAGACACT 57.612 37.500 5.99 2.70 0.00 3.55
7896 8575 7.859875 ACTAAAGTTAGTACAAAGTCGAGACAC 59.140 37.037 5.99 0.00 41.92 3.67
7897 8576 7.934457 ACTAAAGTTAGTACAAAGTCGAGACA 58.066 34.615 5.99 0.00 41.92 3.41
7935 8614 9.967451 TCCAATAGATGATGTAAAACAACCTTA 57.033 29.630 0.00 0.00 0.00 2.69
7936 8615 8.877864 TCCAATAGATGATGTAAAACAACCTT 57.122 30.769 0.00 0.00 0.00 3.50
7937 8616 8.328758 TCTCCAATAGATGATGTAAAACAACCT 58.671 33.333 0.00 0.00 0.00 3.50
7938 8617 8.506168 TCTCCAATAGATGATGTAAAACAACC 57.494 34.615 0.00 0.00 0.00 3.77
8006 8685 1.009829 CATGCAAGGTTCGTCTAGCC 58.990 55.000 0.00 0.00 0.00 3.93
8007 8686 1.009829 CCATGCAAGGTTCGTCTAGC 58.990 55.000 0.00 0.00 0.00 3.42
8044 8724 8.978539 CGTATACACATGCATAATATGGTATCC 58.021 37.037 0.00 0.00 31.06 2.59
8045 8725 9.744468 TCGTATACACATGCATAATATGGTATC 57.256 33.333 0.00 0.00 31.06 2.24
8047 8727 9.528018 CATCGTATACACATGCATAATATGGTA 57.472 33.333 0.00 0.00 0.00 3.25
8298 9028 4.695455 TCAGATTTCCGACCTTCATTTGAC 59.305 41.667 0.00 0.00 0.00 3.18
8310 9040 1.153568 CGCAGCCTCAGATTTCCGA 60.154 57.895 0.00 0.00 0.00 4.55
8388 9118 2.910199 TGATCTTCCATTGCTTCCTCG 58.090 47.619 0.00 0.00 0.00 4.63
8451 9181 1.202222 CGAACAGTACCCGCGTCTTAT 60.202 52.381 4.92 0.00 0.00 1.73
8458 9188 2.505557 CGGTCGAACAGTACCCGC 60.506 66.667 0.00 0.00 31.68 6.13
8461 9191 2.084681 CGTGCGGTCGAACAGTACC 61.085 63.158 0.00 0.00 0.00 3.34
8462 9192 1.332882 GACGTGCGGTCGAACAGTAC 61.333 60.000 0.00 2.33 35.61 2.73
8586 9316 0.830444 AGAGAGTACAACGGCACCCA 60.830 55.000 0.00 0.00 0.00 4.51
8611 9344 2.060050 ATCGAGGGAGTACACAGAGG 57.940 55.000 0.00 0.00 0.00 3.69
9057 10623 1.081376 CGAGGCGAAGTTGAGTCGT 60.081 57.895 0.00 0.00 40.64 4.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.