Multiple sequence alignment - TraesCS7D01G131000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G131000 chr7D 100.000 5590 0 0 1 5590 83096373 83090784 0.000000e+00 10323
1 TraesCS7D01G131000 chr7D 92.105 76 4 2 2191 2266 561921915 561921842 7.660000e-19 106
2 TraesCS7D01G131000 chr7A 92.441 3056 124 47 3 2989 85078720 85075703 0.000000e+00 4265
3 TraesCS7D01G131000 chr7A 96.564 1630 44 8 3032 4649 85075709 85074080 0.000000e+00 2689
4 TraesCS7D01G131000 chr7A 90.476 84 5 3 2191 2273 686113884 686113803 2.130000e-19 108
5 TraesCS7D01G131000 chr7B 93.863 1776 83 9 2972 4728 32468848 32467080 0.000000e+00 2652
6 TraesCS7D01G131000 chr7B 90.554 1355 73 16 886 2196 32470919 32469576 0.000000e+00 1742
7 TraesCS7D01G131000 chr7B 87.966 939 45 13 3 901 32471845 32470935 0.000000e+00 1046
8 TraesCS7D01G131000 chr7B 96.861 446 14 0 2461 2906 32469319 32468874 0.000000e+00 747
9 TraesCS7D01G131000 chr7B 87.678 211 13 3 2267 2464 32469570 32469360 3.370000e-57 233
10 TraesCS7D01G131000 chr7B 87.560 209 10 4 5244 5437 32464080 32463873 1.570000e-55 228
11 TraesCS7D01G131000 chr7B 84.615 234 16 8 4997 5227 32466732 32466516 1.220000e-51 215
12 TraesCS7D01G131000 chr7B 100.000 53 0 0 5403 5455 32415274 32415222 1.280000e-16 99
13 TraesCS7D01G131000 chr3B 85.463 454 50 8 1123 1571 433937393 433936951 5.100000e-125 459
14 TraesCS7D01G131000 chr5B 91.463 82 5 2 2189 2269 460659003 460658923 1.650000e-20 111
15 TraesCS7D01G131000 chr1A 93.151 73 5 0 2191 2263 463825372 463825444 2.130000e-19 108
16 TraesCS7D01G131000 chrUn 88.043 92 7 4 2191 2280 79505386 79505475 7.660000e-19 106
17 TraesCS7D01G131000 chr5D 93.151 73 3 2 2191 2263 114623113 114623183 7.660000e-19 106
18 TraesCS7D01G131000 chr3D 90.244 82 6 2 2191 2271 107672257 107672337 7.660000e-19 106
19 TraesCS7D01G131000 chr1D 88.636 88 5 5 2191 2276 205490367 205490283 9.910000e-18 102


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G131000 chr7D 83090784 83096373 5589 True 10323.000000 10323 100.0000 1 5590 1 chr7D.!!$R1 5589
1 TraesCS7D01G131000 chr7A 85074080 85078720 4640 True 3477.000000 4265 94.5025 3 4649 2 chr7A.!!$R2 4646
2 TraesCS7D01G131000 chr7B 32463873 32471845 7972 True 980.428571 2652 89.8710 3 5437 7 chr7B.!!$R2 5434

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
490 511 0.248565 TGTCACATCAGAGAGCAGGC 59.751 55.000 0.00 0.0 0.00 4.85 F
849 890 0.394625 AGCTCGACACCTCTCTACCC 60.395 60.000 0.00 0.0 0.00 3.69 F
1422 1542 0.109226 GTCGAAGCTAGGCGTCTGTT 60.109 55.000 0.00 0.0 35.07 3.16 F
1423 1543 0.170561 TCGAAGCTAGGCGTCTGTTC 59.829 55.000 0.00 0.0 35.07 3.18 F
1909 2050 0.947180 TCTGTGCGCGTCCTTTTACC 60.947 55.000 8.43 0.0 0.00 2.85 F
2092 2233 3.499338 TGCAATTCCAAGGAGTGATGTT 58.501 40.909 6.16 0.0 0.00 2.71 F
2953 3156 3.753272 AGACATTGACATGTTGCTGTACC 59.247 43.478 0.00 0.0 44.22 3.34 F
4197 4414 0.264359 AGCTCAGGACAGGGCTATCT 59.736 55.000 0.00 0.0 32.94 1.98 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1356 1474 0.036164 ACAACCGTGCCAAGCAGATA 59.964 50.000 0.00 0.00 40.08 1.98 R
2600 2798 1.947456 GTATCATTTGGACGGGCCTTC 59.053 52.381 0.84 0.29 37.63 3.46 R
3082 3285 3.365666 GCATGATATGATGGTTCTTGCCG 60.366 47.826 4.25 0.00 35.60 5.69 R
3298 3502 7.549134 TCAGATTAGCCACATACAAGTTTACAG 59.451 37.037 0.00 0.00 0.00 2.74 R
3829 4046 2.690778 GCGCACACCCTTGATGACC 61.691 63.158 0.30 0.00 0.00 4.02 R
4027 4244 2.375174 TGGTGGAATGTTGAAGTAGCCT 59.625 45.455 0.00 0.00 0.00 4.58 R
4492 4710 1.272425 CCAGCCAGGGGTTTACAATCA 60.272 52.381 0.00 0.00 0.00 2.57 R
5271 8046 0.042188 CTTGTTTCGTCACTGCACCG 60.042 55.000 0.00 0.00 0.00 4.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 3.302365 TTTATCAAGCAAAGTGGCTGC 57.698 42.857 0.00 0.00 45.07 5.25
54 60 2.707902 GCTGCATAGCTAACACCCC 58.292 57.895 0.00 0.00 46.57 4.95
73 79 4.941873 ACCCCGAAAAGTGAATGAGAATAC 59.058 41.667 0.00 0.00 0.00 1.89
98 104 8.928448 ACTTTGCCTACTTCTATCATTCAGATA 58.072 33.333 0.00 0.00 38.19 1.98
132 138 2.029200 AGACAGATAGCATGATCGCCAG 60.029 50.000 0.00 0.00 0.00 4.85
282 288 1.547099 AGACCCCTAGGAGGATAGCA 58.453 55.000 19.81 0.00 37.67 3.49
323 329 2.805099 GTCAGTGACAGCAAGAAGAAGG 59.195 50.000 18.54 0.00 32.09 3.46
354 360 1.584380 GGCTTCAGTCCAGCAGCAAG 61.584 60.000 0.00 0.00 39.21 4.01
477 484 3.535629 CTTCCGCTGGCCTGTCACA 62.536 63.158 11.69 0.00 0.00 3.58
484 505 0.900421 CTGGCCTGTCACATCAGAGA 59.100 55.000 3.32 0.00 37.61 3.10
490 511 0.248565 TGTCACATCAGAGAGCAGGC 59.751 55.000 0.00 0.00 0.00 4.85
846 887 1.472904 CCGTAGCTCGACACCTCTCTA 60.473 57.143 7.07 0.00 42.86 2.43
849 890 0.394625 AGCTCGACACCTCTCTACCC 60.395 60.000 0.00 0.00 0.00 3.69
900 972 0.824759 CTCTAGTGGGCCGCTAAACT 59.175 55.000 25.81 13.02 0.00 2.66
905 977 1.084289 GTGGGCCGCTAAACTAACTG 58.916 55.000 10.52 0.00 0.00 3.16
963 1043 2.607411 TATGTCGGTCGGGCCTACGA 62.607 60.000 0.84 5.93 41.13 3.43
1032 1112 2.677875 GGAAGGCAGCCAACCCAG 60.678 66.667 15.80 0.00 0.00 4.45
1033 1113 2.436109 GAAGGCAGCCAACCCAGA 59.564 61.111 15.80 0.00 0.00 3.86
1034 1114 1.228552 GAAGGCAGCCAACCCAGAA 60.229 57.895 15.80 0.00 0.00 3.02
1045 1141 1.842381 AACCCAGAAAGAGAGCCCGG 61.842 60.000 0.00 0.00 0.00 5.73
1072 1168 2.725759 CGTCGTGGTCGTCTAATCGAAA 60.726 50.000 0.00 0.00 41.47 3.46
1221 1320 0.687427 TCCCCATCATCTGCGAGTCA 60.687 55.000 0.00 0.00 0.00 3.41
1307 1425 2.277692 CGATTCGCGTGCTCGGTA 60.278 61.111 5.77 0.00 37.56 4.02
1341 1459 0.789383 GTCGGCGTTTGAGCGATTTG 60.789 55.000 6.85 0.00 38.18 2.32
1368 1486 2.514592 GCCGCTATCTGCTTGGCA 60.515 61.111 0.00 0.00 44.28 4.92
1422 1542 0.109226 GTCGAAGCTAGGCGTCTGTT 60.109 55.000 0.00 0.00 35.07 3.16
1423 1543 0.170561 TCGAAGCTAGGCGTCTGTTC 59.829 55.000 0.00 0.00 35.07 3.18
1452 1572 2.533942 GTGCGCTTCGATTTGTGTTTTT 59.466 40.909 9.73 0.00 0.00 1.94
1515 1635 8.703336 TGAAATAGAATCGAAATCAATAGCTCG 58.297 33.333 0.00 0.00 0.00 5.03
1561 1681 2.488545 TGTTGTTGTAGTTGCCACGTTT 59.511 40.909 0.00 0.00 0.00 3.60
1567 1687 5.202640 GTTGTAGTTGCCACGTTTTAGAAG 58.797 41.667 0.00 0.00 0.00 2.85
1576 1696 4.671964 GCCACGTTTTAGAAGTTTTTACCG 59.328 41.667 0.00 0.00 0.00 4.02
1597 1718 2.628657 GAGTATCCATCGGTAGCTTGGT 59.371 50.000 0.00 0.00 0.00 3.67
1618 1752 3.980775 GTGTGAATTACATGTGTGGTTGC 59.019 43.478 9.11 0.00 42.24 4.17
1633 1767 3.262448 TTGCTTACCTGTCCCCGCC 62.262 63.158 0.00 0.00 0.00 6.13
1651 1785 3.442625 CCGCCGTTGTATCTATCTATGGA 59.557 47.826 0.00 0.00 0.00 3.41
1702 1843 5.218139 CAAAACAGAAGAAGAAGGCATCAC 58.782 41.667 0.00 0.00 0.00 3.06
1726 1867 4.163458 TCAGATGGTGTAGGGGTACAATTC 59.837 45.833 0.00 0.00 0.00 2.17
1737 1878 3.258123 GGGGTACAATTCAACATGCAGTT 59.742 43.478 0.00 0.00 42.42 3.16
1814 1955 5.239306 CCTTGTTCTGTATTGCTTCAGTTCA 59.761 40.000 0.00 0.00 33.89 3.18
1850 1991 9.758651 GGATTATTTACCAGTTTTCTTGTTTGT 57.241 29.630 0.00 0.00 0.00 2.83
1909 2050 0.947180 TCTGTGCGCGTCCTTTTACC 60.947 55.000 8.43 0.00 0.00 2.85
2092 2233 3.499338 TGCAATTCCAAGGAGTGATGTT 58.501 40.909 6.16 0.00 0.00 2.71
2134 2275 5.303078 AGAAGAGCATGATCGTAAGGTATGT 59.697 40.000 5.12 0.00 38.47 2.29
2276 2417 6.636454 TGGGATGGAGTGATACTTAACTTT 57.364 37.500 0.00 0.00 0.00 2.66
2294 2435 9.371136 CTTAACTTTCATATCTACTGCAGTGAA 57.629 33.333 29.57 18.90 0.00 3.18
2295 2436 9.890629 TTAACTTTCATATCTACTGCAGTGAAT 57.109 29.630 29.57 22.18 0.00 2.57
2600 2798 7.714377 GGCATAGATTATGACTCTTCATATGGG 59.286 40.741 2.13 0.00 43.02 4.00
2953 3156 3.753272 AGACATTGACATGTTGCTGTACC 59.247 43.478 0.00 0.00 44.22 3.34
2983 3186 8.690203 TTTCTGAAATTGAGTGTCCTTGAATA 57.310 30.769 0.00 0.00 0.00 1.75
2985 3188 9.958180 TTCTGAAATTGAGTGTCCTTGAATATA 57.042 29.630 0.00 0.00 0.00 0.86
3082 3285 7.617041 ATTGCATACTTCTTTTAGAGTGTCC 57.383 36.000 0.00 0.00 0.00 4.02
3201 3405 6.934645 TCCTCTGTTGTTTTGACCTATAGTTG 59.065 38.462 0.00 0.00 0.00 3.16
3283 3487 5.241403 TCTGAGGATGGAAAAAGCAACTA 57.759 39.130 0.00 0.00 0.00 2.24
3298 3502 9.923143 AAAAAGCAACTACAGGATTAATAAACC 57.077 29.630 0.00 0.00 0.00 3.27
3392 3596 4.095932 GGGGATTAAAGCCGTCTAAACTTG 59.904 45.833 0.00 0.00 0.00 3.16
3431 3635 8.889717 GCTTGTAGCTATTTAAAATGGTGTCTA 58.110 33.333 0.00 0.00 38.45 2.59
4027 4244 4.819783 GTGGCACCACAAGGATCA 57.180 55.556 14.97 0.00 45.53 2.92
4042 4259 4.851639 AGGATCAGGCTACTTCAACATT 57.148 40.909 0.00 0.00 0.00 2.71
4087 4304 4.103785 CAGAGGATGTACCCTTCAATGGAT 59.896 45.833 0.00 0.00 40.05 3.41
4153 4370 4.982701 AAGCCAGGGCCACAGCAC 62.983 66.667 6.18 0.00 45.63 4.40
4197 4414 0.264359 AGCTCAGGACAGGGCTATCT 59.736 55.000 0.00 0.00 32.94 1.98
4312 4529 2.936584 ATGCCGTACCCACCCCAA 60.937 61.111 0.00 0.00 0.00 4.12
4492 4710 1.956477 GGATGTCAAACAACTGCAGGT 59.044 47.619 19.93 9.19 0.00 4.00
4520 4738 1.677633 CCCCTGGCTGGTTTTACCG 60.678 63.158 9.73 0.00 42.58 4.02
4620 4838 7.048512 ACTGACAGCTATAGTGGGTTTTTATC 58.951 38.462 1.25 0.00 0.00 1.75
4636 4854 7.362660 GGGTTTTTATCGAGCCACTAGATTTTT 60.363 37.037 0.00 0.00 33.69 1.94
4690 4913 4.416505 CAAGTCTTGCCTTGATGTCTTC 57.583 45.455 0.00 0.00 43.65 2.87
4694 4917 5.426504 AGTCTTGCCTTGATGTCTTCATAG 58.573 41.667 0.00 0.00 33.34 2.23
4703 4926 5.411831 TGATGTCTTCATAGTTGCAGAGT 57.588 39.130 0.00 0.00 34.06 3.24
4704 4927 6.530019 TGATGTCTTCATAGTTGCAGAGTA 57.470 37.500 0.00 0.00 34.06 2.59
4717 4940 2.634940 TGCAGAGTACAGGAGAGCTTTT 59.365 45.455 0.00 0.00 0.00 2.27
4718 4941 2.999355 GCAGAGTACAGGAGAGCTTTTG 59.001 50.000 0.00 0.00 0.00 2.44
4722 4945 4.221041 AGAGTACAGGAGAGCTTTTGGTAC 59.779 45.833 0.00 0.00 0.00 3.34
4728 4951 3.844211 AGGAGAGCTTTTGGTACCATGTA 59.156 43.478 17.17 0.00 0.00 2.29
4778 5026 6.783708 TTTTCTGGTTACTTGGTTTGTGAT 57.216 33.333 0.00 0.00 0.00 3.06
4801 5148 9.232473 TGATATCAGCTTATAGTTGATACTCGT 57.768 33.333 13.20 1.37 46.31 4.18
4807 5154 6.642950 AGCTTATAGTTGATACTCGTGCATTC 59.357 38.462 0.00 0.00 35.78 2.67
4809 5156 3.232213 AGTTGATACTCGTGCATTCGT 57.768 42.857 0.00 0.00 0.00 3.85
4820 5167 2.953605 GCATTCGTGCACGCTGTGA 61.954 57.895 33.63 14.23 39.60 3.58
4821 5168 1.154599 CATTCGTGCACGCTGTGAC 60.155 57.895 33.63 0.00 39.60 3.67
4823 5170 2.987282 ATTCGTGCACGCTGTGACCA 62.987 55.000 33.63 11.80 39.60 4.02
4824 5171 3.268603 CGTGCACGCTGTGACCAA 61.269 61.111 28.16 0.00 35.23 3.67
4825 5172 2.633657 GTGCACGCTGTGACCAAG 59.366 61.111 0.00 0.00 35.23 3.61
4826 5173 3.279116 TGCACGCTGTGACCAAGC 61.279 61.111 11.94 0.00 35.23 4.01
4827 5174 3.279116 GCACGCTGTGACCAAGCA 61.279 61.111 11.94 0.00 35.23 3.91
4828 5175 2.941333 CACGCTGTGACCAAGCAG 59.059 61.111 3.04 0.00 35.23 4.24
4830 5177 1.153168 ACGCTGTGACCAAGCAGTT 60.153 52.632 0.00 0.00 35.33 3.16
4832 5179 1.225855 CGCTGTGACCAAGCAGTTAA 58.774 50.000 0.00 0.00 35.33 2.01
4833 5180 1.069906 CGCTGTGACCAAGCAGTTAAC 60.070 52.381 0.00 0.00 35.33 2.01
4834 5181 2.222027 GCTGTGACCAAGCAGTTAACT 58.778 47.619 1.12 1.12 35.33 2.24
4835 5182 2.618709 GCTGTGACCAAGCAGTTAACTT 59.381 45.455 5.07 0.00 35.33 2.66
4836 5183 3.066760 GCTGTGACCAAGCAGTTAACTTT 59.933 43.478 5.07 0.00 35.33 2.66
4837 5184 4.440112 GCTGTGACCAAGCAGTTAACTTTT 60.440 41.667 5.07 0.72 35.33 2.27
4863 5216 8.970020 TGCTTATTGAAATCATCACCAGTAAAT 58.030 29.630 0.00 0.00 37.92 1.40
4875 5228 5.680619 TCACCAGTAAATGTTATAGGCCAG 58.319 41.667 5.01 0.00 0.00 4.85
4877 5230 3.821033 CCAGTAAATGTTATAGGCCAGGC 59.179 47.826 5.01 1.26 0.00 4.85
4889 5242 2.267045 GCCAGGCCAAATTCGAAGT 58.733 52.632 5.01 0.00 0.00 3.01
4891 5244 1.132453 GCCAGGCCAAATTCGAAGTAC 59.868 52.381 5.01 0.00 0.00 2.73
4892 5245 2.711542 CCAGGCCAAATTCGAAGTACT 58.288 47.619 5.01 0.00 0.00 2.73
4893 5246 3.869065 CCAGGCCAAATTCGAAGTACTA 58.131 45.455 5.01 0.00 0.00 1.82
4894 5247 4.258543 CCAGGCCAAATTCGAAGTACTAA 58.741 43.478 5.01 0.00 0.00 2.24
4895 5248 4.094442 CCAGGCCAAATTCGAAGTACTAAC 59.906 45.833 5.01 0.00 0.00 2.34
4896 5249 4.693566 CAGGCCAAATTCGAAGTACTAACA 59.306 41.667 5.01 0.00 0.00 2.41
4897 5250 5.354234 CAGGCCAAATTCGAAGTACTAACAT 59.646 40.000 5.01 0.00 0.00 2.71
4898 5251 5.354234 AGGCCAAATTCGAAGTACTAACATG 59.646 40.000 5.01 0.00 0.00 3.21
4899 5252 5.123344 GGCCAAATTCGAAGTACTAACATGT 59.877 40.000 3.35 0.00 0.00 3.21
4900 5253 6.349033 GGCCAAATTCGAAGTACTAACATGTT 60.349 38.462 16.68 16.68 0.00 2.71
4901 5254 7.081976 GCCAAATTCGAAGTACTAACATGTTT 58.918 34.615 17.78 1.74 0.00 2.83
4902 5255 7.593644 GCCAAATTCGAAGTACTAACATGTTTT 59.406 33.333 17.78 4.10 0.00 2.43
4923 5276 4.339872 TTTTAGTCAACGGTCTGGCTTA 57.660 40.909 3.48 0.00 32.31 3.09
4924 5277 4.339872 TTTAGTCAACGGTCTGGCTTAA 57.660 40.909 3.48 0.00 32.31 1.85
4925 5278 4.546829 TTAGTCAACGGTCTGGCTTAAT 57.453 40.909 3.48 0.00 32.31 1.40
4926 5279 3.418684 AGTCAACGGTCTGGCTTAATT 57.581 42.857 0.00 0.00 0.00 1.40
4928 5281 3.071479 GTCAACGGTCTGGCTTAATTGA 58.929 45.455 0.00 0.00 0.00 2.57
4929 5282 3.689649 GTCAACGGTCTGGCTTAATTGAT 59.310 43.478 0.00 0.00 0.00 2.57
4930 5283 4.873827 GTCAACGGTCTGGCTTAATTGATA 59.126 41.667 0.00 0.00 0.00 2.15
4931 5284 5.353123 GTCAACGGTCTGGCTTAATTGATAA 59.647 40.000 0.00 0.00 0.00 1.75
4932 5285 5.941058 TCAACGGTCTGGCTTAATTGATAAA 59.059 36.000 0.00 0.00 0.00 1.40
4933 5286 6.601613 TCAACGGTCTGGCTTAATTGATAAAT 59.398 34.615 0.00 0.00 0.00 1.40
4934 5287 7.122055 TCAACGGTCTGGCTTAATTGATAAATT 59.878 33.333 0.00 0.00 0.00 1.82
4935 5288 8.402472 CAACGGTCTGGCTTAATTGATAAATTA 58.598 33.333 0.00 0.00 0.00 1.40
4936 5289 8.154649 ACGGTCTGGCTTAATTGATAAATTAG 57.845 34.615 0.00 0.00 0.00 1.73
4937 5290 7.990886 ACGGTCTGGCTTAATTGATAAATTAGA 59.009 33.333 0.00 0.00 0.00 2.10
4938 5291 8.836413 CGGTCTGGCTTAATTGATAAATTAGAA 58.164 33.333 0.00 0.00 0.00 2.10
4960 5313 8.690680 AGAAGAGTAAGTACATCAAATCGAAC 57.309 34.615 0.00 0.00 0.00 3.95
4961 5314 8.304596 AGAAGAGTAAGTACATCAAATCGAACA 58.695 33.333 0.00 0.00 0.00 3.18
4962 5315 8.827177 AAGAGTAAGTACATCAAATCGAACAA 57.173 30.769 0.00 0.00 0.00 2.83
4963 5316 8.827177 AGAGTAAGTACATCAAATCGAACAAA 57.173 30.769 0.00 0.00 0.00 2.83
4964 5317 9.268268 AGAGTAAGTACATCAAATCGAACAAAA 57.732 29.630 0.00 0.00 0.00 2.44
4965 5318 9.872757 GAGTAAGTACATCAAATCGAACAAAAA 57.127 29.630 0.00 0.00 0.00 1.94
4966 5319 9.659830 AGTAAGTACATCAAATCGAACAAAAAC 57.340 29.630 0.00 0.00 0.00 2.43
4967 5320 9.440784 GTAAGTACATCAAATCGAACAAAAACA 57.559 29.630 0.00 0.00 0.00 2.83
4968 5321 8.918961 AAGTACATCAAATCGAACAAAAACAA 57.081 26.923 0.00 0.00 0.00 2.83
4969 5322 8.560576 AGTACATCAAATCGAACAAAAACAAG 57.439 30.769 0.00 0.00 0.00 3.16
4988 5341 2.506472 GGATTCCGCTCCCCTGAC 59.494 66.667 0.00 0.00 0.00 3.51
4989 5342 2.066999 GGATTCCGCTCCCCTGACT 61.067 63.158 0.00 0.00 0.00 3.41
4990 5343 1.627297 GGATTCCGCTCCCCTGACTT 61.627 60.000 0.00 0.00 0.00 3.01
4991 5344 0.253327 GATTCCGCTCCCCTGACTTT 59.747 55.000 0.00 0.00 0.00 2.66
4992 5345 0.035056 ATTCCGCTCCCCTGACTTTG 60.035 55.000 0.00 0.00 0.00 2.77
4993 5346 1.415672 TTCCGCTCCCCTGACTTTGT 61.416 55.000 0.00 0.00 0.00 2.83
4994 5347 0.543410 TCCGCTCCCCTGACTTTGTA 60.543 55.000 0.00 0.00 0.00 2.41
4995 5348 0.108138 CCGCTCCCCTGACTTTGTAG 60.108 60.000 0.00 0.00 0.00 2.74
4996 5349 0.608640 CGCTCCCCTGACTTTGTAGT 59.391 55.000 0.00 0.00 37.31 2.73
5035 5388 2.028112 TGCTCCATTCACTGTCCAGTAC 60.028 50.000 0.00 0.00 40.20 2.73
5036 5389 2.234908 GCTCCATTCACTGTCCAGTACT 59.765 50.000 0.00 0.00 40.20 2.73
5037 5390 3.677424 GCTCCATTCACTGTCCAGTACTC 60.677 52.174 0.00 0.00 40.20 2.59
5039 5392 3.511540 TCCATTCACTGTCCAGTACTCTG 59.488 47.826 0.00 0.00 40.20 3.35
5040 5393 3.257393 CATTCACTGTCCAGTACTCTGC 58.743 50.000 0.00 0.00 40.20 4.26
5041 5394 1.995376 TCACTGTCCAGTACTCTGCA 58.005 50.000 0.00 0.00 40.20 4.41
5042 5395 2.529632 TCACTGTCCAGTACTCTGCAT 58.470 47.619 0.00 0.00 40.20 3.96
5043 5396 2.899900 TCACTGTCCAGTACTCTGCATT 59.100 45.455 0.00 0.00 40.20 3.56
5044 5397 3.056536 TCACTGTCCAGTACTCTGCATTC 60.057 47.826 0.00 0.00 40.20 2.67
5045 5398 3.056250 CACTGTCCAGTACTCTGCATTCT 60.056 47.826 0.00 0.00 40.20 2.40
5046 5399 3.194542 ACTGTCCAGTACTCTGCATTCTC 59.805 47.826 0.00 0.00 40.43 2.87
5047 5400 3.435275 TGTCCAGTACTCTGCATTCTCT 58.565 45.455 0.00 0.00 40.09 3.10
5048 5401 3.194329 TGTCCAGTACTCTGCATTCTCTG 59.806 47.826 0.00 0.00 40.09 3.35
5075 5428 1.845266 CTATGGACGTGCTACTGCTG 58.155 55.000 8.99 0.00 40.48 4.41
5076 5429 0.179111 TATGGACGTGCTACTGCTGC 60.179 55.000 8.99 0.00 40.48 5.25
5077 5430 1.892819 ATGGACGTGCTACTGCTGCT 61.893 55.000 8.99 0.00 40.48 4.24
5082 5435 0.738975 CGTGCTACTGCTGCTACCTA 59.261 55.000 0.00 0.00 40.48 3.08
5098 5451 7.148557 GCTGCTACCTAAACTAAAACTTCAGAG 60.149 40.741 0.00 0.00 0.00 3.35
5113 5466 2.455557 TCAGAGAGAAGAAGAGCCAGG 58.544 52.381 0.00 0.00 0.00 4.45
5114 5467 1.134729 CAGAGAGAAGAAGAGCCAGGC 60.135 57.143 1.84 1.84 0.00 4.85
5115 5468 1.194218 GAGAGAAGAAGAGCCAGGCT 58.806 55.000 16.12 16.12 43.88 4.58
5116 5469 1.554617 GAGAGAAGAAGAGCCAGGCTT 59.445 52.381 17.46 0.00 39.88 4.35
5117 5470 1.554617 AGAGAAGAAGAGCCAGGCTTC 59.445 52.381 17.46 10.52 39.88 3.86
5147 5500 5.053145 TGAAGCTTCAGAGAAGAAGACAAC 58.947 41.667 25.16 0.00 46.18 3.32
5160 5513 4.235360 AGAAGACAACGAAGATTGTACGG 58.765 43.478 0.00 0.00 42.89 4.02
5163 5516 3.985925 AGACAACGAAGATTGTACGGTTC 59.014 43.478 0.00 0.00 42.89 3.62
5169 5522 3.744426 CGAAGATTGTACGGTTCTTTGGT 59.256 43.478 9.86 0.00 30.11 3.67
5177 5530 4.981674 TGTACGGTTCTTTGGTACTAAACG 59.018 41.667 0.00 5.71 37.87 3.60
5190 5543 1.271379 ACTAAACGAAGCTGGCATGGT 60.271 47.619 0.00 0.00 0.00 3.55
5202 5555 3.119029 GCTGGCATGGTGTGAACAAATAT 60.119 43.478 0.00 0.00 0.00 1.28
5203 5556 4.426416 CTGGCATGGTGTGAACAAATATG 58.574 43.478 0.00 0.00 0.00 1.78
5232 5588 1.656652 GGATCACCGGACTGAATGTG 58.343 55.000 9.46 0.00 0.00 3.21
5233 5589 1.009829 GATCACCGGACTGAATGTGC 58.990 55.000 9.46 0.00 0.00 4.57
5235 5591 0.037326 TCACCGGACTGAATGTGCTC 60.037 55.000 9.46 0.00 34.66 4.26
5237 5593 1.204704 CACCGGACTGAATGTGCTCTA 59.795 52.381 9.46 0.00 34.66 2.43
5238 5594 1.899814 ACCGGACTGAATGTGCTCTAA 59.100 47.619 9.46 0.00 34.66 2.10
5240 5596 3.244422 ACCGGACTGAATGTGCTCTAAAA 60.244 43.478 9.46 0.00 34.66 1.52
5241 5597 3.941483 CCGGACTGAATGTGCTCTAAAAT 59.059 43.478 0.00 0.00 34.66 1.82
5242 5598 4.396166 CCGGACTGAATGTGCTCTAAAATT 59.604 41.667 0.00 0.00 34.66 1.82
5252 8027 6.691754 TGTGCTCTAAAATTTTGACACTGA 57.308 33.333 13.76 2.13 0.00 3.41
5293 8068 1.663643 GTGCAGTGACGAAACAAGTGA 59.336 47.619 0.00 0.00 0.00 3.41
5295 8070 3.493129 GTGCAGTGACGAAACAAGTGATA 59.507 43.478 0.00 0.00 0.00 2.15
5326 8101 7.572759 TCAACGAAGCAACTTAAGAAATACTG 58.427 34.615 10.09 0.00 0.00 2.74
5368 8143 3.237746 TCTGAATTCATGGTGCCCAAAA 58.762 40.909 8.96 0.00 36.95 2.44
5403 8193 6.476378 ACAGTTGATAGAGTTGGTTAGCATT 58.524 36.000 0.00 0.00 0.00 3.56
5425 8215 7.575720 GCATTAAACTCCAGTGCTAGAAATGTT 60.576 37.037 0.00 0.00 33.25 2.71
5437 8227 5.807520 TGCTAGAAATGTTTTTGAACGCAAA 59.192 32.000 0.00 0.00 41.97 3.68
5446 8236 3.719173 TTTGAACGCAAAAGTAAGGGG 57.281 42.857 0.00 0.00 40.82 4.79
5447 8237 2.642154 TGAACGCAAAAGTAAGGGGA 57.358 45.000 0.00 0.00 0.00 4.81
5448 8238 2.500229 TGAACGCAAAAGTAAGGGGAG 58.500 47.619 0.00 0.00 0.00 4.30
5449 8239 1.810755 GAACGCAAAAGTAAGGGGAGG 59.189 52.381 0.00 0.00 0.00 4.30
5450 8240 1.061546 ACGCAAAAGTAAGGGGAGGA 58.938 50.000 0.00 0.00 0.00 3.71
5451 8241 1.003233 ACGCAAAAGTAAGGGGAGGAG 59.997 52.381 0.00 0.00 0.00 3.69
5452 8242 1.003233 CGCAAAAGTAAGGGGAGGAGT 59.997 52.381 0.00 0.00 0.00 3.85
5453 8243 2.235402 CGCAAAAGTAAGGGGAGGAGTA 59.765 50.000 0.00 0.00 0.00 2.59
5454 8244 3.118371 CGCAAAAGTAAGGGGAGGAGTAT 60.118 47.826 0.00 0.00 0.00 2.12
5455 8245 4.625564 CGCAAAAGTAAGGGGAGGAGTATT 60.626 45.833 0.00 0.00 0.00 1.89
5456 8246 5.262009 GCAAAAGTAAGGGGAGGAGTATTT 58.738 41.667 0.00 0.00 0.00 1.40
5457 8247 5.715279 GCAAAAGTAAGGGGAGGAGTATTTT 59.285 40.000 0.00 0.00 0.00 1.82
5458 8248 6.127703 GCAAAAGTAAGGGGAGGAGTATTTTC 60.128 42.308 0.00 0.00 0.00 2.29
5459 8249 6.713731 AAAGTAAGGGGAGGAGTATTTTCA 57.286 37.500 0.00 0.00 0.00 2.69
5460 8250 6.910259 AAGTAAGGGGAGGAGTATTTTCAT 57.090 37.500 0.00 0.00 0.00 2.57
5461 8251 6.910259 AGTAAGGGGAGGAGTATTTTCATT 57.090 37.500 0.00 0.00 0.00 2.57
5462 8252 7.285340 AGTAAGGGGAGGAGTATTTTCATTT 57.715 36.000 0.00 0.00 0.00 2.32
5463 8253 7.347252 AGTAAGGGGAGGAGTATTTTCATTTC 58.653 38.462 0.00 0.00 0.00 2.17
5464 8254 6.408770 AAGGGGAGGAGTATTTTCATTTCT 57.591 37.500 0.00 0.00 0.00 2.52
5465 8255 6.007485 AGGGGAGGAGTATTTTCATTTCTC 57.993 41.667 0.00 0.00 0.00 2.87
5466 8256 4.816925 GGGGAGGAGTATTTTCATTTCTCG 59.183 45.833 0.00 0.00 0.00 4.04
5467 8257 5.429130 GGGAGGAGTATTTTCATTTCTCGT 58.571 41.667 0.00 0.00 0.00 4.18
5468 8258 6.407752 GGGGAGGAGTATTTTCATTTCTCGTA 60.408 42.308 0.00 0.00 0.00 3.43
5469 8259 6.702282 GGGAGGAGTATTTTCATTTCTCGTAG 59.298 42.308 0.00 0.00 0.00 3.51
5470 8260 6.702282 GGAGGAGTATTTTCATTTCTCGTAGG 59.298 42.308 0.00 0.00 0.00 3.18
5471 8261 7.417570 GGAGGAGTATTTTCATTTCTCGTAGGA 60.418 40.741 0.00 0.00 0.00 2.94
5472 8262 7.848128 AGGAGTATTTTCATTTCTCGTAGGAA 58.152 34.615 0.00 0.00 0.00 3.36
5473 8263 8.487028 AGGAGTATTTTCATTTCTCGTAGGAAT 58.513 33.333 0.00 0.00 0.00 3.01
5474 8264 9.110502 GGAGTATTTTCATTTCTCGTAGGAATT 57.889 33.333 0.00 0.00 0.00 2.17
5500 8290 9.617523 TTTTTCAGCTGATAGTTGATCATATGA 57.382 29.630 19.04 8.10 43.78 2.15
5501 8291 8.599055 TTTCAGCTGATAGTTGATCATATGAC 57.401 34.615 19.04 3.09 43.78 3.06
5502 8292 6.385033 TCAGCTGATAGTTGATCATATGACG 58.615 40.000 13.74 0.00 43.78 4.35
5503 8293 6.015940 TCAGCTGATAGTTGATCATATGACGT 60.016 38.462 13.74 0.00 43.78 4.34
5504 8294 6.089150 CAGCTGATAGTTGATCATATGACGTG 59.911 42.308 8.42 0.00 43.78 4.49
5505 8295 5.164012 GCTGATAGTTGATCATATGACGTGC 60.164 44.000 7.78 0.00 43.78 5.34
5506 8296 5.230182 TGATAGTTGATCATATGACGTGCC 58.770 41.667 7.78 0.00 39.78 5.01
5507 8297 2.838736 AGTTGATCATATGACGTGCCC 58.161 47.619 7.78 0.00 0.00 5.36
5508 8298 2.170397 AGTTGATCATATGACGTGCCCA 59.830 45.455 7.78 0.00 0.00 5.36
5509 8299 3.141398 GTTGATCATATGACGTGCCCAT 58.859 45.455 7.78 0.00 0.00 4.00
5510 8300 3.044235 TGATCATATGACGTGCCCATC 57.956 47.619 7.78 0.00 0.00 3.51
5511 8301 2.634453 TGATCATATGACGTGCCCATCT 59.366 45.455 7.78 0.00 0.00 2.90
5512 8302 3.071457 TGATCATATGACGTGCCCATCTT 59.929 43.478 7.78 0.00 0.00 2.40
5513 8303 3.558931 TCATATGACGTGCCCATCTTT 57.441 42.857 0.00 0.00 0.00 2.52
5514 8304 3.884895 TCATATGACGTGCCCATCTTTT 58.115 40.909 0.00 0.00 0.00 2.27
5515 8305 4.269183 TCATATGACGTGCCCATCTTTTT 58.731 39.130 0.00 0.00 0.00 1.94
5535 8325 5.385509 TTTTCCTTGCTGCTTGGTATAAC 57.614 39.130 0.00 0.00 0.00 1.89
5536 8326 3.712016 TCCTTGCTGCTTGGTATAACA 57.288 42.857 0.00 0.00 0.00 2.41
5537 8327 4.027674 TCCTTGCTGCTTGGTATAACAA 57.972 40.909 2.61 2.61 0.00 2.83
5538 8328 3.756434 TCCTTGCTGCTTGGTATAACAAC 59.244 43.478 0.00 0.00 0.00 3.32
5539 8329 3.758554 CCTTGCTGCTTGGTATAACAACT 59.241 43.478 0.00 0.00 0.00 3.16
5540 8330 4.142600 CCTTGCTGCTTGGTATAACAACTC 60.143 45.833 0.00 0.00 0.00 3.01
5541 8331 4.014569 TGCTGCTTGGTATAACAACTCA 57.985 40.909 0.00 0.13 0.00 3.41
5542 8332 4.002982 TGCTGCTTGGTATAACAACTCAG 58.997 43.478 17.52 17.52 32.99 3.35
5543 8333 4.253685 GCTGCTTGGTATAACAACTCAGA 58.746 43.478 22.65 0.00 32.22 3.27
5544 8334 4.695455 GCTGCTTGGTATAACAACTCAGAA 59.305 41.667 22.65 1.08 32.22 3.02
5545 8335 5.181245 GCTGCTTGGTATAACAACTCAGAAA 59.819 40.000 22.65 0.00 32.22 2.52
5546 8336 6.621596 GCTGCTTGGTATAACAACTCAGAAAG 60.622 42.308 22.65 5.22 32.22 2.62
5547 8337 5.181245 TGCTTGGTATAACAACTCAGAAAGC 59.819 40.000 0.00 0.00 37.42 3.51
5548 8338 5.412904 GCTTGGTATAACAACTCAGAAAGCT 59.587 40.000 0.00 0.00 34.82 3.74
5549 8339 6.594159 GCTTGGTATAACAACTCAGAAAGCTA 59.406 38.462 0.00 0.00 34.82 3.32
5550 8340 7.119262 GCTTGGTATAACAACTCAGAAAGCTAA 59.881 37.037 0.00 0.00 34.82 3.09
5551 8341 8.911918 TTGGTATAACAACTCAGAAAGCTAAA 57.088 30.769 0.00 0.00 0.00 1.85
5552 8342 8.911918 TGGTATAACAACTCAGAAAGCTAAAA 57.088 30.769 0.00 0.00 0.00 1.52
5553 8343 8.780249 TGGTATAACAACTCAGAAAGCTAAAAC 58.220 33.333 0.00 0.00 0.00 2.43
5554 8344 8.780249 GGTATAACAACTCAGAAAGCTAAAACA 58.220 33.333 0.00 0.00 0.00 2.83
5555 8345 9.813080 GTATAACAACTCAGAAAGCTAAAACAG 57.187 33.333 0.00 0.00 0.00 3.16
5556 8346 8.677148 ATAACAACTCAGAAAGCTAAAACAGA 57.323 30.769 0.00 0.00 0.00 3.41
5557 8347 6.610741 ACAACTCAGAAAGCTAAAACAGAG 57.389 37.500 0.00 0.00 0.00 3.35
5558 8348 5.008118 ACAACTCAGAAAGCTAAAACAGAGC 59.992 40.000 0.00 0.00 40.42 4.09
5559 8349 4.708177 ACTCAGAAAGCTAAAACAGAGCA 58.292 39.130 0.00 0.00 42.69 4.26
5560 8350 4.513318 ACTCAGAAAGCTAAAACAGAGCAC 59.487 41.667 0.00 0.00 42.69 4.40
5561 8351 4.708177 TCAGAAAGCTAAAACAGAGCACT 58.292 39.130 0.00 0.00 42.69 4.40
5563 8353 3.251972 AGAAAGCTAAAACAGAGCACTGC 59.748 43.478 11.37 0.00 46.95 4.40
5564 8354 2.260844 AGCTAAAACAGAGCACTGCA 57.739 45.000 11.37 0.00 46.95 4.41
5565 8355 2.575532 AGCTAAAACAGAGCACTGCAA 58.424 42.857 11.37 0.00 46.95 4.08
5566 8356 2.291741 AGCTAAAACAGAGCACTGCAAC 59.708 45.455 11.37 0.00 46.95 4.17
5567 8357 2.291741 GCTAAAACAGAGCACTGCAACT 59.708 45.455 11.37 0.00 46.95 3.16
5568 8358 3.243201 GCTAAAACAGAGCACTGCAACTT 60.243 43.478 11.37 2.50 46.95 2.66
5569 8359 4.024048 GCTAAAACAGAGCACTGCAACTTA 60.024 41.667 11.37 3.47 46.95 2.24
5570 8360 4.981806 AAAACAGAGCACTGCAACTTAA 57.018 36.364 11.37 0.00 46.95 1.85
5571 8361 5.520376 AAAACAGAGCACTGCAACTTAAT 57.480 34.783 11.37 0.00 46.95 1.40
5572 8362 5.520376 AAACAGAGCACTGCAACTTAATT 57.480 34.783 11.37 0.00 46.95 1.40
5573 8363 4.756084 ACAGAGCACTGCAACTTAATTC 57.244 40.909 11.37 0.00 46.95 2.17
5574 8364 4.136796 ACAGAGCACTGCAACTTAATTCA 58.863 39.130 11.37 0.00 46.95 2.57
5575 8365 4.763793 ACAGAGCACTGCAACTTAATTCAT 59.236 37.500 11.37 0.00 46.95 2.57
5576 8366 5.242393 ACAGAGCACTGCAACTTAATTCATT 59.758 36.000 11.37 0.00 46.95 2.57
5577 8367 6.154445 CAGAGCACTGCAACTTAATTCATTT 58.846 36.000 3.30 0.00 37.33 2.32
5578 8368 6.089016 CAGAGCACTGCAACTTAATTCATTTG 59.911 38.462 3.30 0.00 37.33 2.32
5579 8369 5.846203 AGCACTGCAACTTAATTCATTTGT 58.154 33.333 3.30 0.00 0.00 2.83
5580 8370 6.980593 AGCACTGCAACTTAATTCATTTGTA 58.019 32.000 3.30 0.00 0.00 2.41
5581 8371 7.605449 AGCACTGCAACTTAATTCATTTGTAT 58.395 30.769 3.30 0.00 0.00 2.29
5582 8372 8.739039 AGCACTGCAACTTAATTCATTTGTATA 58.261 29.630 3.30 0.00 0.00 1.47
5583 8373 8.798153 GCACTGCAACTTAATTCATTTGTATAC 58.202 33.333 0.00 0.00 0.00 1.47
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 0.906066 TTCGGGGTGTTAGCTATGCA 59.094 50.000 0.00 0.00 0.00 3.96
40 41 3.374058 CACTTTTCGGGGTGTTAGCTATG 59.626 47.826 0.00 0.00 0.00 2.23
54 60 6.524586 GGCAAAGTATTCTCATTCACTTTTCG 59.475 38.462 0.00 0.00 38.75 3.46
73 79 9.941325 ATATCTGAATGATAGAAGTAGGCAAAG 57.059 33.333 0.00 0.00 40.58 2.77
106 112 5.298026 GGCGATCATGCTATCTGTCTATCTA 59.702 44.000 0.00 0.00 34.52 1.98
166 172 7.682787 TTTGCTCCTCTTATCTCCTATTCTT 57.317 36.000 0.00 0.00 0.00 2.52
282 288 1.812571 CGCATTGCTTTCCTGTAACCT 59.187 47.619 7.12 0.00 0.00 3.50
323 329 3.050275 GAAGCCGTGTGCAGGGTC 61.050 66.667 11.83 5.35 44.83 4.46
354 360 3.791586 GCTCCTGCCCTGTCCCTC 61.792 72.222 0.00 0.00 0.00 4.30
464 471 0.743701 CTCTGATGTGACAGGCCAGC 60.744 60.000 5.01 0.00 38.31 4.85
473 480 0.822811 GAGCCTGCTCTCTGATGTGA 59.177 55.000 11.82 0.00 39.80 3.58
477 484 0.675083 CGATGAGCCTGCTCTCTGAT 59.325 55.000 19.07 5.18 43.12 2.90
818 859 1.523032 TCGAGCTACGGCGAGATGA 60.523 57.895 16.62 0.02 44.37 2.92
829 870 1.134159 GGGTAGAGAGGTGTCGAGCTA 60.134 57.143 0.00 0.00 0.00 3.32
963 1043 0.462759 GCCTTAGTCGGCTTCTGCAT 60.463 55.000 0.00 0.00 46.63 3.96
1032 1112 1.227002 CGCTACCGGGCTCTCTTTC 60.227 63.158 6.32 0.00 0.00 2.62
1033 1113 2.893398 CGCTACCGGGCTCTCTTT 59.107 61.111 6.32 0.00 0.00 2.52
1034 1114 3.839432 GCGCTACCGGGCTCTCTT 61.839 66.667 6.32 0.00 44.85 2.85
1045 1141 4.748679 ACGACCACGACGCGCTAC 62.749 66.667 5.73 0.00 42.66 3.58
1221 1320 4.778143 GGGTTGTCGCCGAGGCAT 62.778 66.667 15.03 0.00 42.06 4.40
1326 1444 1.337110 GCACCAAATCGCTCAAACGC 61.337 55.000 0.00 0.00 0.00 4.84
1329 1447 1.081509 GCGCACCAAATCGCTCAAA 60.082 52.632 0.30 0.00 46.92 2.69
1330 1448 2.560861 GCGCACCAAATCGCTCAA 59.439 55.556 0.30 0.00 46.92 3.02
1356 1474 0.036164 ACAACCGTGCCAAGCAGATA 59.964 50.000 0.00 0.00 40.08 1.98
1368 1486 2.466846 CAACGTAGAGACAACAACCGT 58.533 47.619 0.00 0.00 0.00 4.83
1429 1549 1.509787 CACAAATCGAAGCGCACGG 60.510 57.895 22.26 11.61 0.00 4.94
1452 1572 2.036217 TCCTAAAACGCGGAGAAGTTCA 59.964 45.455 12.47 0.00 0.00 3.18
1481 1601 9.830975 TGATTTCGATTCTATTTCATCAAGGTA 57.169 29.630 0.00 0.00 0.00 3.08
1482 1602 8.737168 TGATTTCGATTCTATTTCATCAAGGT 57.263 30.769 0.00 0.00 0.00 3.50
1496 1616 3.433615 CCCCGAGCTATTGATTTCGATTC 59.566 47.826 0.00 0.00 35.19 2.52
1515 1635 0.688749 AATCTGCCCAATTCAGCCCC 60.689 55.000 0.00 0.00 0.00 5.80
1561 1681 7.703621 CGATGGATACTCGGTAAAAACTTCTAA 59.296 37.037 0.00 0.00 34.82 2.10
1576 1696 2.628657 ACCAAGCTACCGATGGATACTC 59.371 50.000 8.39 0.00 37.66 2.59
1594 1715 3.826524 ACCACACATGTAATTCACACCA 58.173 40.909 0.00 0.00 40.86 4.17
1597 1718 3.888323 AGCAACCACACATGTAATTCACA 59.112 39.130 0.00 0.00 42.69 3.58
1618 1752 2.951101 AACGGCGGGGACAGGTAAG 61.951 63.158 13.24 0.00 0.00 2.34
1702 1843 2.747177 TGTACCCCTACACCATCTGAG 58.253 52.381 0.00 0.00 0.00 3.35
1726 1867 5.464057 ATGTTTTCACATCAACTGCATGTTG 59.536 36.000 17.67 17.67 44.75 3.33
1814 1955 5.885912 ACTGGTAAATAATCCGTCTTGCAAT 59.114 36.000 0.00 0.00 0.00 3.56
1867 2008 7.012989 CAGATCTTGCATTCCTTGTCATATTCA 59.987 37.037 0.00 0.00 0.00 2.57
2092 2233 4.038282 TCTTCTGCAAAGTACTCACGGTTA 59.962 41.667 0.00 0.00 0.00 2.85
2276 2417 8.414629 AGACATATTCACTGCAGTAGATATGA 57.585 34.615 37.37 24.19 36.73 2.15
2311 2452 6.961359 TTAGTGTCATCCTGTCATAAAACG 57.039 37.500 0.00 0.00 0.00 3.60
2363 2510 9.522804 CATCCATCTCACTAAGTTTTAGTAGAC 57.477 37.037 1.50 0.00 0.00 2.59
2600 2798 1.947456 GTATCATTTGGACGGGCCTTC 59.053 52.381 0.84 0.29 37.63 3.46
2885 3083 9.653287 CTACAGGAAGTTTTAACTCATATGTGA 57.347 33.333 11.60 0.00 38.57 3.58
2953 3156 6.799512 AGGACACTCAATTTCAGAAAACAAG 58.200 36.000 0.00 0.53 0.00 3.16
3029 3232 7.078249 TGGACATATGAACTGGCAATATACT 57.922 36.000 10.38 0.00 0.00 2.12
3082 3285 3.365666 GCATGATATGATGGTTCTTGCCG 60.366 47.826 4.25 0.00 35.60 5.69
3201 3405 9.098355 TCACATCATACTCTAAACATAACTTGC 57.902 33.333 0.00 0.00 0.00 4.01
3298 3502 7.549134 TCAGATTAGCCACATACAAGTTTACAG 59.451 37.037 0.00 0.00 0.00 2.74
3300 3504 7.843490 TCAGATTAGCCACATACAAGTTTAC 57.157 36.000 0.00 0.00 0.00 2.01
3427 3631 4.098196 ACGGAAGCTCAATTAGGTCTAGAC 59.902 45.833 14.87 14.87 33.87 2.59
3431 3635 3.983044 AACGGAAGCTCAATTAGGTCT 57.017 42.857 0.00 0.00 33.87 3.85
3432 3636 6.278363 TGTATAACGGAAGCTCAATTAGGTC 58.722 40.000 0.00 0.00 33.87 3.85
3772 3989 4.319766 GCACCTTCTCTTGTTGTGTATGTG 60.320 45.833 0.00 0.00 0.00 3.21
3829 4046 2.690778 GCGCACACCCTTGATGACC 61.691 63.158 0.30 0.00 0.00 4.02
4027 4244 2.375174 TGGTGGAATGTTGAAGTAGCCT 59.625 45.455 0.00 0.00 0.00 4.58
4312 4529 1.440618 TTGGCCGGTATGGTGGATAT 58.559 50.000 1.90 0.00 41.21 1.63
4492 4710 1.272425 CCAGCCAGGGGTTTACAATCA 60.272 52.381 0.00 0.00 0.00 2.57
4636 4854 4.837860 AGCAATTAATCCCAGGTGACAAAA 59.162 37.500 0.00 0.00 0.00 2.44
4640 4858 3.891049 AGAGCAATTAATCCCAGGTGAC 58.109 45.455 0.00 0.00 0.00 3.67
4680 4900 5.798132 ACTCTGCAACTATGAAGACATCAA 58.202 37.500 0.00 0.00 42.54 2.57
4683 4903 6.286240 TGTACTCTGCAACTATGAAGACAT 57.714 37.500 0.00 0.00 36.23 3.06
4690 4913 4.736168 GCTCTCCTGTACTCTGCAACTATG 60.736 50.000 0.00 0.00 0.00 2.23
4694 4917 1.548269 AGCTCTCCTGTACTCTGCAAC 59.452 52.381 0.00 0.00 0.00 4.17
4703 4926 3.244582 TGGTACCAAAAGCTCTCCTGTA 58.755 45.455 13.60 0.00 0.00 2.74
4704 4927 2.054799 TGGTACCAAAAGCTCTCCTGT 58.945 47.619 13.60 0.00 0.00 4.00
4717 4940 7.723616 CCCATTCAGAAATATTACATGGTACCA 59.276 37.037 18.99 18.99 0.00 3.25
4718 4941 7.724061 ACCCATTCAGAAATATTACATGGTACC 59.276 37.037 4.43 4.43 0.00 3.34
4754 5002 6.591750 TCACAAACCAAGTAACCAGAAAAA 57.408 33.333 0.00 0.00 0.00 1.94
4778 5026 7.040686 TGCACGAGTATCAACTATAAGCTGATA 60.041 37.037 0.00 0.00 33.51 2.15
4807 5154 3.227372 CTTGGTCACAGCGTGCACG 62.227 63.158 34.01 34.01 43.27 5.34
4809 5156 3.279116 GCTTGGTCACAGCGTGCA 61.279 61.111 4.15 0.00 32.98 4.57
4825 5172 8.977505 TGATTTCAATAAGCAAAAGTTAACTGC 58.022 29.630 9.34 9.52 36.29 4.40
4830 5177 9.638239 GGTGATGATTTCAATAAGCAAAAGTTA 57.362 29.630 0.00 0.00 35.70 2.24
4832 5179 7.669427 TGGTGATGATTTCAATAAGCAAAAGT 58.331 30.769 0.00 0.00 35.70 2.66
4833 5180 7.816031 ACTGGTGATGATTTCAATAAGCAAAAG 59.184 33.333 0.00 0.00 35.70 2.27
4834 5181 7.669427 ACTGGTGATGATTTCAATAAGCAAAA 58.331 30.769 0.00 0.00 35.70 2.44
4835 5182 7.230849 ACTGGTGATGATTTCAATAAGCAAA 57.769 32.000 0.00 0.00 35.70 3.68
4836 5183 6.839124 ACTGGTGATGATTTCAATAAGCAA 57.161 33.333 0.00 0.00 35.70 3.91
4837 5184 7.936496 TTACTGGTGATGATTTCAATAAGCA 57.064 32.000 0.00 0.00 35.70 3.91
4875 5228 5.123344 ACATGTTAGTACTTCGAATTTGGCC 59.877 40.000 0.00 0.00 0.00 5.36
4877 5230 9.458374 AAAAACATGTTAGTACTTCGAATTTGG 57.542 29.630 12.39 0.00 0.00 3.28
4901 5254 3.202829 AGCCAGACCGTTGACTAAAAA 57.797 42.857 0.00 0.00 0.00 1.94
4902 5255 2.922740 AGCCAGACCGTTGACTAAAA 57.077 45.000 0.00 0.00 0.00 1.52
4904 5257 4.546829 ATTAAGCCAGACCGTTGACTAA 57.453 40.909 0.00 0.00 0.00 2.24
4905 5258 4.020928 TCAATTAAGCCAGACCGTTGACTA 60.021 41.667 0.00 0.00 0.00 2.59
4907 5260 3.071479 TCAATTAAGCCAGACCGTTGAC 58.929 45.455 0.00 0.00 0.00 3.18
4908 5261 3.410631 TCAATTAAGCCAGACCGTTGA 57.589 42.857 0.00 0.00 0.00 3.18
4909 5262 5.811399 TTATCAATTAAGCCAGACCGTTG 57.189 39.130 0.00 0.00 0.00 4.10
4910 5263 7.404671 AATTTATCAATTAAGCCAGACCGTT 57.595 32.000 0.00 0.00 30.22 4.44
4912 5265 8.378172 TCTAATTTATCAATTAAGCCAGACCG 57.622 34.615 0.00 0.00 34.96 4.79
4934 5287 9.784680 GTTCGATTTGATGTACTTACTCTTCTA 57.215 33.333 0.00 0.00 0.00 2.10
4935 5288 8.304596 TGTTCGATTTGATGTACTTACTCTTCT 58.695 33.333 0.00 0.00 0.00 2.85
4936 5289 8.462143 TGTTCGATTTGATGTACTTACTCTTC 57.538 34.615 0.00 0.00 0.00 2.87
4937 5290 8.827177 TTGTTCGATTTGATGTACTTACTCTT 57.173 30.769 0.00 0.00 0.00 2.85
4938 5291 8.827177 TTTGTTCGATTTGATGTACTTACTCT 57.173 30.769 0.00 0.00 0.00 3.24
4939 5292 9.872757 TTTTTGTTCGATTTGATGTACTTACTC 57.127 29.630 0.00 0.00 0.00 2.59
4940 5293 9.659830 GTTTTTGTTCGATTTGATGTACTTACT 57.340 29.630 0.00 0.00 0.00 2.24
4941 5294 9.440784 TGTTTTTGTTCGATTTGATGTACTTAC 57.559 29.630 0.00 0.00 0.00 2.34
4943 5296 8.918961 TTGTTTTTGTTCGATTTGATGTACTT 57.081 26.923 0.00 0.00 0.00 2.24
4944 5297 7.647715 CCTTGTTTTTGTTCGATTTGATGTACT 59.352 33.333 0.00 0.00 0.00 2.73
4945 5298 7.096230 CCCTTGTTTTTGTTCGATTTGATGTAC 60.096 37.037 0.00 0.00 0.00 2.90
4946 5299 6.920758 CCCTTGTTTTTGTTCGATTTGATGTA 59.079 34.615 0.00 0.00 0.00 2.29
4947 5300 5.752955 CCCTTGTTTTTGTTCGATTTGATGT 59.247 36.000 0.00 0.00 0.00 3.06
4948 5301 5.177327 CCCCTTGTTTTTGTTCGATTTGATG 59.823 40.000 0.00 0.00 0.00 3.07
4949 5302 5.069781 TCCCCTTGTTTTTGTTCGATTTGAT 59.930 36.000 0.00 0.00 0.00 2.57
4950 5303 4.402793 TCCCCTTGTTTTTGTTCGATTTGA 59.597 37.500 0.00 0.00 0.00 2.69
4951 5304 4.688021 TCCCCTTGTTTTTGTTCGATTTG 58.312 39.130 0.00 0.00 0.00 2.32
4952 5305 5.545063 ATCCCCTTGTTTTTGTTCGATTT 57.455 34.783 0.00 0.00 0.00 2.17
4953 5306 5.510690 GGAATCCCCTTGTTTTTGTTCGATT 60.511 40.000 0.00 0.00 0.00 3.34
4954 5307 4.021456 GGAATCCCCTTGTTTTTGTTCGAT 60.021 41.667 0.00 0.00 0.00 3.59
4955 5308 3.319689 GGAATCCCCTTGTTTTTGTTCGA 59.680 43.478 0.00 0.00 0.00 3.71
4956 5309 3.649073 GGAATCCCCTTGTTTTTGTTCG 58.351 45.455 0.00 0.00 0.00 3.95
4957 5310 3.649073 CGGAATCCCCTTGTTTTTGTTC 58.351 45.455 0.00 0.00 0.00 3.18
4958 5311 2.224185 GCGGAATCCCCTTGTTTTTGTT 60.224 45.455 0.00 0.00 0.00 2.83
4959 5312 1.343142 GCGGAATCCCCTTGTTTTTGT 59.657 47.619 0.00 0.00 0.00 2.83
4960 5313 1.618343 AGCGGAATCCCCTTGTTTTTG 59.382 47.619 0.00 0.00 0.00 2.44
4961 5314 1.893137 GAGCGGAATCCCCTTGTTTTT 59.107 47.619 0.00 0.00 0.00 1.94
4962 5315 1.545841 GAGCGGAATCCCCTTGTTTT 58.454 50.000 0.00 0.00 0.00 2.43
4963 5316 0.323451 GGAGCGGAATCCCCTTGTTT 60.323 55.000 0.00 0.00 32.79 2.83
4964 5317 1.303282 GGAGCGGAATCCCCTTGTT 59.697 57.895 0.00 0.00 32.79 2.83
4965 5318 2.998949 GGAGCGGAATCCCCTTGT 59.001 61.111 0.00 0.00 32.79 3.16
4988 5341 4.516365 AGTTACGGTCCTGACTACAAAG 57.484 45.455 0.00 0.00 0.00 2.77
4989 5342 4.942761 AAGTTACGGTCCTGACTACAAA 57.057 40.909 0.00 0.00 0.00 2.83
4990 5343 5.536161 AGTTAAGTTACGGTCCTGACTACAA 59.464 40.000 0.00 0.00 0.00 2.41
4991 5344 5.048504 CAGTTAAGTTACGGTCCTGACTACA 60.049 44.000 0.00 0.00 0.00 2.74
4992 5345 5.397326 CAGTTAAGTTACGGTCCTGACTAC 58.603 45.833 0.00 0.00 0.00 2.73
4993 5346 4.082571 GCAGTTAAGTTACGGTCCTGACTA 60.083 45.833 0.00 0.00 0.00 2.59
4994 5347 3.305881 GCAGTTAAGTTACGGTCCTGACT 60.306 47.826 0.00 0.00 0.00 3.41
4995 5348 2.991866 GCAGTTAAGTTACGGTCCTGAC 59.008 50.000 0.00 0.00 0.00 3.51
4996 5349 2.895404 AGCAGTTAAGTTACGGTCCTGA 59.105 45.455 0.00 0.00 0.00 3.86
4997 5350 3.251571 GAGCAGTTAAGTTACGGTCCTG 58.748 50.000 0.00 0.00 0.00 3.86
4998 5351 2.233186 GGAGCAGTTAAGTTACGGTCCT 59.767 50.000 13.44 0.00 36.83 3.85
4999 5352 2.028748 TGGAGCAGTTAAGTTACGGTCC 60.029 50.000 13.68 13.68 38.49 4.46
5000 5353 3.308438 TGGAGCAGTTAAGTTACGGTC 57.692 47.619 0.00 0.00 0.00 4.79
5001 5354 3.975168 ATGGAGCAGTTAAGTTACGGT 57.025 42.857 0.00 0.00 0.00 4.83
5002 5355 4.092968 GTGAATGGAGCAGTTAAGTTACGG 59.907 45.833 0.00 0.00 0.00 4.02
5048 5401 1.218230 GCACGTCCATAGCAGCTAGC 61.218 60.000 6.62 6.62 46.19 3.42
5049 5402 0.387202 AGCACGTCCATAGCAGCTAG 59.613 55.000 8.43 0.44 0.00 3.42
5050 5403 1.337071 GTAGCACGTCCATAGCAGCTA 59.663 52.381 4.10 4.10 33.83 3.32
5075 5428 8.305317 TCTCTCTGAAGTTTTAGTTTAGGTAGC 58.695 37.037 0.00 0.00 0.00 3.58
5098 5451 1.554617 AGAAGCCTGGCTCTTCTTCTC 59.445 52.381 23.61 13.78 45.67 2.87
5106 5459 1.303155 AGTTGCAGAAGCCTGGCTC 60.303 57.895 23.61 15.17 38.25 4.70
5107 5460 1.602888 CAGTTGCAGAAGCCTGGCT 60.603 57.895 17.22 17.22 42.56 4.75
5108 5461 1.174712 TTCAGTTGCAGAAGCCTGGC 61.175 55.000 11.65 11.65 40.72 4.85
5109 5462 0.879765 CTTCAGTTGCAGAAGCCTGG 59.120 55.000 1.67 0.00 40.72 4.45
5138 5491 4.235360 CCGTACAATCTTCGTTGTCTTCT 58.765 43.478 0.00 0.00 41.18 2.85
5144 5497 4.985044 AAGAACCGTACAATCTTCGTTG 57.015 40.909 0.00 0.00 35.25 4.10
5147 5500 3.744426 ACCAAAGAACCGTACAATCTTCG 59.256 43.478 5.55 3.10 32.45 3.79
5160 5513 5.333875 CCAGCTTCGTTTAGTACCAAAGAAC 60.334 44.000 0.00 0.00 0.00 3.01
5163 5516 3.120304 GCCAGCTTCGTTTAGTACCAAAG 60.120 47.826 0.00 0.00 0.00 2.77
5169 5522 2.027561 ACCATGCCAGCTTCGTTTAGTA 60.028 45.455 0.00 0.00 0.00 1.82
5177 5530 0.242017 GTTCACACCATGCCAGCTTC 59.758 55.000 0.00 0.00 0.00 3.86
5190 5543 5.974158 CCGTGTTGTTTCATATTTGTTCACA 59.026 36.000 0.00 0.00 0.00 3.58
5227 5583 7.715657 TCAGTGTCAAAATTTTAGAGCACATT 58.284 30.769 19.14 7.90 0.00 2.71
5228 5584 7.275888 TCAGTGTCAAAATTTTAGAGCACAT 57.724 32.000 19.14 8.93 0.00 3.21
5230 5586 7.985634 TTTCAGTGTCAAAATTTTAGAGCAC 57.014 32.000 2.44 9.86 0.00 4.40
5231 5587 8.250332 AGTTTTCAGTGTCAAAATTTTAGAGCA 58.750 29.630 2.44 0.00 0.00 4.26
5232 5588 8.634475 AGTTTTCAGTGTCAAAATTTTAGAGC 57.366 30.769 2.44 1.33 0.00 4.09
5233 5589 9.787532 TGAGTTTTCAGTGTCAAAATTTTAGAG 57.212 29.630 2.44 0.00 0.00 2.43
5252 8027 2.607892 GCTGCCGCGTCTGAGTTTT 61.608 57.895 4.92 0.00 0.00 2.43
5271 8046 0.042188 CTTGTTTCGTCACTGCACCG 60.042 55.000 0.00 0.00 0.00 4.94
5278 8053 6.586463 TGAGAAGATATCACTTGTTTCGTCAC 59.414 38.462 5.32 0.00 0.00 3.67
5281 8056 6.089551 CGTTGAGAAGATATCACTTGTTTCGT 59.910 38.462 5.32 0.00 0.00 3.85
5282 8057 6.308041 TCGTTGAGAAGATATCACTTGTTTCG 59.692 38.462 5.32 1.62 0.00 3.46
5316 8091 4.081198 CCTGGAGCTCTGTCAGTATTTCTT 60.081 45.833 14.64 0.00 0.00 2.52
5326 8101 1.079266 CACTGCCTGGAGCTCTGTC 60.079 63.158 14.64 0.00 44.23 3.51
5368 8143 7.238486 ACTCTATCAACTGTTGAAGACATCT 57.762 36.000 25.26 10.90 43.95 2.90
5403 8193 7.817418 AAAACATTTCTAGCACTGGAGTTTA 57.183 32.000 0.00 0.00 0.00 2.01
5425 8215 3.700038 TCCCCTTACTTTTGCGTTCAAAA 59.300 39.130 3.60 3.60 46.51 2.44
5437 8227 6.910259 ATGAAAATACTCCTCCCCTTACTT 57.090 37.500 0.00 0.00 0.00 2.24
5438 8228 6.910259 AATGAAAATACTCCTCCCCTTACT 57.090 37.500 0.00 0.00 0.00 2.24
5439 8229 7.347252 AGAAATGAAAATACTCCTCCCCTTAC 58.653 38.462 0.00 0.00 0.00 2.34
5440 8230 7.525158 AGAAATGAAAATACTCCTCCCCTTA 57.475 36.000 0.00 0.00 0.00 2.69
5441 8231 6.408770 AGAAATGAAAATACTCCTCCCCTT 57.591 37.500 0.00 0.00 0.00 3.95
5442 8232 5.396884 CGAGAAATGAAAATACTCCTCCCCT 60.397 44.000 0.00 0.00 0.00 4.79
5443 8233 4.816925 CGAGAAATGAAAATACTCCTCCCC 59.183 45.833 0.00 0.00 0.00 4.81
5444 8234 5.429130 ACGAGAAATGAAAATACTCCTCCC 58.571 41.667 0.00 0.00 0.00 4.30
5445 8235 6.702282 CCTACGAGAAATGAAAATACTCCTCC 59.298 42.308 0.00 0.00 0.00 4.30
5446 8236 7.490000 TCCTACGAGAAATGAAAATACTCCTC 58.510 38.462 0.00 0.00 0.00 3.71
5447 8237 7.419711 TCCTACGAGAAATGAAAATACTCCT 57.580 36.000 0.00 0.00 0.00 3.69
5448 8238 8.664211 ATTCCTACGAGAAATGAAAATACTCC 57.336 34.615 0.00 0.00 0.00 3.85
5484 8274 4.627467 GGGCACGTCATATGATCAACTATC 59.373 45.833 9.02 0.00 34.93 2.08
5485 8275 4.040339 TGGGCACGTCATATGATCAACTAT 59.960 41.667 9.02 0.00 0.00 2.12
5486 8276 3.386402 TGGGCACGTCATATGATCAACTA 59.614 43.478 9.02 0.00 0.00 2.24
5487 8277 2.170397 TGGGCACGTCATATGATCAACT 59.830 45.455 9.02 0.00 0.00 3.16
5488 8278 2.560504 TGGGCACGTCATATGATCAAC 58.439 47.619 9.02 0.00 0.00 3.18
5489 8279 2.998316 TGGGCACGTCATATGATCAA 57.002 45.000 9.02 0.00 0.00 2.57
5490 8280 2.634453 AGATGGGCACGTCATATGATCA 59.366 45.455 11.57 0.00 35.00 2.92
5491 8281 3.325293 AGATGGGCACGTCATATGATC 57.675 47.619 11.57 0.00 35.00 2.92
5492 8282 3.777106 AAGATGGGCACGTCATATGAT 57.223 42.857 11.57 0.00 35.00 2.45
5493 8283 3.558931 AAAGATGGGCACGTCATATGA 57.441 42.857 11.57 0.00 35.00 2.15
5494 8284 4.637483 AAAAAGATGGGCACGTCATATG 57.363 40.909 11.57 0.00 35.00 1.78
5512 8302 5.303078 TGTTATACCAAGCAGCAAGGAAAAA 59.697 36.000 9.93 0.00 0.00 1.94
5513 8303 4.830046 TGTTATACCAAGCAGCAAGGAAAA 59.170 37.500 9.93 0.00 0.00 2.29
5514 8304 4.402829 TGTTATACCAAGCAGCAAGGAAA 58.597 39.130 9.93 0.00 0.00 3.13
5515 8305 4.027674 TGTTATACCAAGCAGCAAGGAA 57.972 40.909 9.93 0.00 0.00 3.36
5516 8306 3.712016 TGTTATACCAAGCAGCAAGGA 57.288 42.857 9.93 0.00 0.00 3.36
5517 8307 3.758554 AGTTGTTATACCAAGCAGCAAGG 59.241 43.478 0.00 0.00 0.00 3.61
5518 8308 4.455533 TGAGTTGTTATACCAAGCAGCAAG 59.544 41.667 0.00 0.00 0.00 4.01
5519 8309 4.393834 TGAGTTGTTATACCAAGCAGCAA 58.606 39.130 0.00 0.00 0.00 3.91
5520 8310 4.002982 CTGAGTTGTTATACCAAGCAGCA 58.997 43.478 0.00 0.00 0.00 4.41
5521 8311 4.253685 TCTGAGTTGTTATACCAAGCAGC 58.746 43.478 7.53 0.00 32.30 5.25
5522 8312 6.621596 GCTTTCTGAGTTGTTATACCAAGCAG 60.622 42.308 6.51 6.51 34.39 4.24
5523 8313 5.181245 GCTTTCTGAGTTGTTATACCAAGCA 59.819 40.000 0.00 0.00 34.39 3.91
5524 8314 5.412904 AGCTTTCTGAGTTGTTATACCAAGC 59.587 40.000 0.00 0.00 34.43 4.01
5525 8315 8.547967 TTAGCTTTCTGAGTTGTTATACCAAG 57.452 34.615 0.00 0.00 0.00 3.61
5526 8316 8.911918 TTTAGCTTTCTGAGTTGTTATACCAA 57.088 30.769 0.00 0.00 0.00 3.67
5527 8317 8.780249 GTTTTAGCTTTCTGAGTTGTTATACCA 58.220 33.333 0.00 0.00 0.00 3.25
5528 8318 8.780249 TGTTTTAGCTTTCTGAGTTGTTATACC 58.220 33.333 0.00 0.00 0.00 2.73
5529 8319 9.813080 CTGTTTTAGCTTTCTGAGTTGTTATAC 57.187 33.333 0.00 0.00 0.00 1.47
5530 8320 9.772973 TCTGTTTTAGCTTTCTGAGTTGTTATA 57.227 29.630 0.00 0.00 0.00 0.98
5531 8321 8.677148 TCTGTTTTAGCTTTCTGAGTTGTTAT 57.323 30.769 0.00 0.00 0.00 1.89
5532 8322 7.254795 GCTCTGTTTTAGCTTTCTGAGTTGTTA 60.255 37.037 0.00 0.00 37.01 2.41
5533 8323 6.458888 GCTCTGTTTTAGCTTTCTGAGTTGTT 60.459 38.462 0.00 0.00 37.01 2.83
5534 8324 5.008118 GCTCTGTTTTAGCTTTCTGAGTTGT 59.992 40.000 0.00 0.00 37.01 3.32
5535 8325 5.008019 TGCTCTGTTTTAGCTTTCTGAGTTG 59.992 40.000 0.00 0.00 40.73 3.16
5536 8326 5.008118 GTGCTCTGTTTTAGCTTTCTGAGTT 59.992 40.000 0.00 0.00 40.73 3.01
5537 8327 4.513318 GTGCTCTGTTTTAGCTTTCTGAGT 59.487 41.667 0.00 0.00 40.73 3.41
5538 8328 4.754114 AGTGCTCTGTTTTAGCTTTCTGAG 59.246 41.667 0.00 0.95 40.73 3.35
5539 8329 4.512944 CAGTGCTCTGTTTTAGCTTTCTGA 59.487 41.667 7.63 0.00 40.73 3.27
5540 8330 4.781071 CAGTGCTCTGTTTTAGCTTTCTG 58.219 43.478 7.63 0.00 40.73 3.02
5541 8331 3.251972 GCAGTGCTCTGTTTTAGCTTTCT 59.748 43.478 16.59 0.00 43.05 2.52
5542 8332 3.003689 TGCAGTGCTCTGTTTTAGCTTTC 59.996 43.478 17.60 0.00 43.05 2.62
5543 8333 2.951642 TGCAGTGCTCTGTTTTAGCTTT 59.048 40.909 17.60 0.00 43.05 3.51
5544 8334 2.575532 TGCAGTGCTCTGTTTTAGCTT 58.424 42.857 17.60 0.00 43.05 3.74
5545 8335 2.260844 TGCAGTGCTCTGTTTTAGCT 57.739 45.000 17.60 0.00 43.05 3.32
5546 8336 2.291741 AGTTGCAGTGCTCTGTTTTAGC 59.708 45.455 17.60 2.44 43.05 3.09
5547 8337 4.558538 AAGTTGCAGTGCTCTGTTTTAG 57.441 40.909 17.60 0.00 43.05 1.85
5548 8338 6.633500 ATTAAGTTGCAGTGCTCTGTTTTA 57.367 33.333 17.60 8.02 43.05 1.52
5549 8339 4.981806 TTAAGTTGCAGTGCTCTGTTTT 57.018 36.364 17.60 8.83 43.05 2.43
5550 8340 5.067674 TGAATTAAGTTGCAGTGCTCTGTTT 59.932 36.000 17.60 9.09 43.05 2.83
5551 8341 4.580167 TGAATTAAGTTGCAGTGCTCTGTT 59.420 37.500 17.60 7.19 43.05 3.16
5552 8342 4.136796 TGAATTAAGTTGCAGTGCTCTGT 58.863 39.130 17.60 1.96 43.05 3.41
5553 8343 4.754372 TGAATTAAGTTGCAGTGCTCTG 57.246 40.909 17.60 11.44 43.87 3.35
5554 8344 5.972107 AATGAATTAAGTTGCAGTGCTCT 57.028 34.783 17.60 11.77 0.00 4.09
5555 8345 5.922544 ACAAATGAATTAAGTTGCAGTGCTC 59.077 36.000 17.60 9.58 0.00 4.26
5556 8346 5.846203 ACAAATGAATTAAGTTGCAGTGCT 58.154 33.333 17.60 0.00 0.00 4.40
5557 8347 7.816945 ATACAAATGAATTAAGTTGCAGTGC 57.183 32.000 8.58 8.58 0.00 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.