Multiple sequence alignment - TraesCS7D01G130500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G130500 chr7D 100.000 6779 0 0 1 6779 82721809 82715031 0.000000e+00 12519.0
1 TraesCS7D01G130500 chr7B 93.445 5019 225 38 830 5808 31813292 31808338 0.000000e+00 7350.0
2 TraesCS7D01G130500 chr7B 88.158 1064 92 19 4214 5253 31790655 31789602 0.000000e+00 1236.0
3 TraesCS7D01G130500 chr7B 86.604 530 34 21 6137 6662 31787300 31786804 9.940000e-153 551.0
4 TraesCS7D01G130500 chr7B 89.573 422 37 2 5609 6028 31789606 31789190 4.660000e-146 529.0
5 TraesCS7D01G130500 chr7B 95.473 243 10 1 509 750 31813681 31813439 2.970000e-103 387.0
6 TraesCS7D01G130500 chr7B 78.077 520 63 19 31 512 31814896 31814390 1.440000e-71 281.0
7 TraesCS7D01G130500 chr7B 93.519 108 6 1 6673 6779 31786828 31786721 7.040000e-35 159.0
8 TraesCS7D01G130500 chr7A 93.254 4121 216 30 1847 5958 84704095 84700028 0.000000e+00 6013.0
9 TraesCS7D01G130500 chr7A 92.220 874 42 13 841 1699 84704968 84704106 0.000000e+00 1214.0
10 TraesCS7D01G130500 chr7A 84.848 462 39 12 322 765 84705548 84705100 2.900000e-118 436.0
11 TraesCS7D01G130500 chr7A 83.370 457 41 22 6129 6567 84691482 84691043 2.290000e-104 390.0
12 TraesCS7D01G130500 chr7A 88.835 206 22 1 1429 1634 453708611 453708407 1.130000e-62 252.0
13 TraesCS7D01G130500 chr7A 100.000 32 0 0 1 32 89781303 89781334 7.340000e-05 60.2
14 TraesCS7D01G130500 chrUn 100.000 385 0 0 3894 4278 480710294 480710678 0.000000e+00 712.0
15 TraesCS7D01G130500 chrUn 100.000 32 0 0 1 32 67960670 67960639 7.340000e-05 60.2
16 TraesCS7D01G130500 chr3A 76.716 1151 194 47 2376 3503 112322650 112321551 2.120000e-159 573.0
17 TraesCS7D01G130500 chr3A 100.000 32 0 0 1 32 27483473 27483442 7.340000e-05 60.2
18 TraesCS7D01G130500 chr5A 77.103 939 167 36 2376 3291 543449742 543448829 3.650000e-137 499.0
19 TraesCS7D01G130500 chr5A 87.603 242 22 7 1564 1803 523023436 523023671 2.410000e-69 274.0
20 TraesCS7D01G130500 chr5A 89.806 206 20 1 1429 1634 326654937 326654733 5.210000e-66 263.0
21 TraesCS7D01G130500 chr6B 78.581 761 123 30 1938 2682 684672140 684671404 3.700000e-127 466.0
22 TraesCS7D01G130500 chr6B 80.000 440 61 19 1080 1503 684673571 684673143 3.970000e-77 300.0
23 TraesCS7D01G130500 chr6D 78.278 755 133 22 1938 2677 450894440 450893702 2.230000e-124 457.0
24 TraesCS7D01G130500 chr6D 78.863 686 119 20 4420 5088 450891913 450891237 2.240000e-119 440.0
25 TraesCS7D01G130500 chr6D 85.641 390 27 13 1104 1466 173910989 173911376 3.840000e-102 383.0
26 TraesCS7D01G130500 chr6D 85.818 275 34 3 1065 1335 450895778 450895505 3.090000e-73 287.0
27 TraesCS7D01G130500 chr6D 89.500 200 20 1 1435 1634 58108896 58108698 1.130000e-62 252.0
28 TraesCS7D01G130500 chr6D 100.000 30 0 0 1 30 293608668 293608697 1.000000e-03 56.5
29 TraesCS7D01G130500 chr6A 78.042 756 136 22 1938 2682 596524940 596524204 3.730000e-122 449.0
30 TraesCS7D01G130500 chr6A 77.345 693 125 25 4421 5088 596522410 596521725 1.380000e-101 381.0
31 TraesCS7D01G130500 chr6A 80.198 404 66 12 1104 1503 596526346 596525953 2.390000e-74 291.0
32 TraesCS7D01G130500 chr2D 85.751 386 48 5 1429 1812 381953208 381952828 1.060000e-107 401.0
33 TraesCS7D01G130500 chr2D 89.474 209 21 1 1426 1634 641362001 641362208 5.210000e-66 263.0
34 TraesCS7D01G130500 chr5D 86.162 383 33 10 1100 1466 61459375 61459753 4.930000e-106 396.0
35 TraesCS7D01G130500 chr5D 89.320 206 21 1 1429 1634 424602379 424602175 2.430000e-64 257.0
36 TraesCS7D01G130500 chr5D 100.000 31 0 0 1 31 447948344 447948374 2.640000e-04 58.4
37 TraesCS7D01G130500 chr5B 84.971 346 34 12 1135 1466 116307206 116306865 1.090000e-87 335.0
38 TraesCS7D01G130500 chr5B 90.291 206 19 1 1429 1634 695846164 695845960 1.120000e-67 268.0
39 TraesCS7D01G130500 chr5B 91.111 45 1 3 1 42 10513467 10513511 2.640000e-04 58.4
40 TraesCS7D01G130500 chr4B 83.467 375 45 9 1105 1464 221192541 221192913 3.920000e-87 333.0
41 TraesCS7D01G130500 chr3D 83.158 380 43 11 1100 1466 282445580 282445209 1.820000e-85 327.0
42 TraesCS7D01G130500 chr2A 85.714 252 27 8 1564 1812 26027286 26027531 2.430000e-64 257.0
43 TraesCS7D01G130500 chr1D 100.000 32 0 0 1 32 316002431 316002462 7.340000e-05 60.2
44 TraesCS7D01G130500 chr4D 100.000 31 0 0 1 31 100817818 100817848 2.640000e-04 58.4
45 TraesCS7D01G130500 chr1A 97.059 34 1 0 1 34 469377488 469377455 2.640000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G130500 chr7D 82715031 82721809 6778 True 12519.000000 12519 100.000000 1 6779 1 chr7D.!!$R1 6778
1 TraesCS7D01G130500 chr7B 31808338 31814896 6558 True 2672.666667 7350 88.998333 31 5808 3 chr7B.!!$R2 5777
2 TraesCS7D01G130500 chr7B 31786721 31790655 3934 True 618.750000 1236 89.463500 4214 6779 4 chr7B.!!$R1 2565
3 TraesCS7D01G130500 chr7A 84700028 84705548 5520 True 2554.333333 6013 90.107333 322 5958 3 chr7A.!!$R3 5636
4 TraesCS7D01G130500 chr3A 112321551 112322650 1099 True 573.000000 573 76.716000 2376 3503 1 chr3A.!!$R2 1127
5 TraesCS7D01G130500 chr5A 543448829 543449742 913 True 499.000000 499 77.103000 2376 3291 1 chr5A.!!$R2 915
6 TraesCS7D01G130500 chr6B 684671404 684673571 2167 True 383.000000 466 79.290500 1080 2682 2 chr6B.!!$R1 1602
7 TraesCS7D01G130500 chr6D 450891237 450895778 4541 True 394.666667 457 80.986333 1065 5088 3 chr6D.!!$R2 4023
8 TraesCS7D01G130500 chr6A 596521725 596526346 4621 True 373.666667 449 78.528333 1104 5088 3 chr6A.!!$R1 3984

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
374 423 0.033699 AGAGGGGAAAAGATGGCAGC 60.034 55.000 0.00 0.0 0.00 5.25 F
484 546 0.472471 TTCCTTCCCTCGCACACTTT 59.528 50.000 0.00 0.0 0.00 2.66 F
1741 3032 0.402887 TGTAGATCGATAGGCGGGGA 59.597 55.000 0.00 0.0 41.33 4.81 F
2040 3516 0.105964 TTGGTGGAGTTGTCGTGGAG 59.894 55.000 0.00 0.0 0.00 3.86 F
3166 4669 0.391793 GGGGCGAGAAGTTTGAGGAG 60.392 60.000 0.00 0.0 0.00 3.69 F
3496 5021 3.494378 CAGCAGAATCTGGGCACG 58.506 61.111 12.66 0.0 31.21 5.34 F
5298 7170 0.322187 AATGGGGTACGTGTTCTGGC 60.322 55.000 0.00 0.0 0.00 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1730 3021 1.067582 CGACTGTTCCCCGCCTATC 59.932 63.158 0.00 0.00 0.00 2.08 R
2040 3516 1.305219 TTAACATGTGCTGCGGCCTC 61.305 55.000 16.57 8.98 37.74 4.70 R
3334 4840 2.938956 AGAGCATATAAGGTGTGCCC 57.061 50.000 0.00 0.00 45.16 5.36 R
3496 5021 6.143438 CAGTGCACAAGTTTGAAGATTTGATC 59.857 38.462 21.04 0.00 0.00 2.92 R
4607 6429 0.813184 TTAGAACCCGCCGACTGTAG 59.187 55.000 0.00 0.00 0.00 2.74 R
5404 7276 0.377203 GCCGTTAGTGCCATTAGTGC 59.623 55.000 0.00 0.00 0.00 4.40 R
6543 10214 0.036388 GAGGGTGAAATGTGGCGAGA 60.036 55.000 0.00 0.00 0.00 4.04 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 7.880713 TCCTTATACTCAACACTATGTTTGCAA 59.119 33.333 0.00 0.00 38.77 4.08
63 64 0.752743 AGGCACAAGTTTCTGCAGCA 60.753 50.000 9.47 0.00 34.90 4.41
68 69 3.242188 GCACAAGTTTCTGCAGCAAAAAG 60.242 43.478 9.47 0.08 33.31 2.27
71 72 5.120519 CACAAGTTTCTGCAGCAAAAAGAAA 59.879 36.000 9.47 0.00 37.54 2.52
72 73 5.700373 ACAAGTTTCTGCAGCAAAAAGAAAA 59.300 32.000 9.47 0.00 40.56 2.29
73 74 6.204495 ACAAGTTTCTGCAGCAAAAAGAAAAA 59.796 30.769 9.47 0.00 40.56 1.94
98 99 4.924305 AACTACGTACCAGTTCACTTGA 57.076 40.909 0.00 0.00 30.36 3.02
117 118 4.576106 TGAAAAGCGTTTTTGAAGTTGC 57.424 36.364 15.01 0.00 36.66 4.17
118 119 4.241681 TGAAAAGCGTTTTTGAAGTTGCT 58.758 34.783 15.01 0.00 36.66 3.91
119 120 4.091220 TGAAAAGCGTTTTTGAAGTTGCTG 59.909 37.500 15.01 0.00 36.66 4.41
120 121 3.502191 AAGCGTTTTTGAAGTTGCTGA 57.498 38.095 0.00 0.00 32.14 4.26
121 122 3.715628 AGCGTTTTTGAAGTTGCTGAT 57.284 38.095 0.00 0.00 0.00 2.90
122 123 4.829064 AGCGTTTTTGAAGTTGCTGATA 57.171 36.364 0.00 0.00 0.00 2.15
126 127 4.324402 CGTTTTTGAAGTTGCTGATATGCC 59.676 41.667 0.00 0.00 0.00 4.40
134 135 0.758123 TGCTGATATGCCGACCATGA 59.242 50.000 0.00 0.00 35.34 3.07
146 147 3.430929 GCCGACCATGATAGAGTTGTTCT 60.431 47.826 0.00 0.00 40.06 3.01
155 156 6.544928 TGATAGAGTTGTTCTTAGCCATCA 57.455 37.500 0.00 0.00 37.36 3.07
158 159 4.573900 AGAGTTGTTCTTAGCCATCAGTG 58.426 43.478 0.00 0.00 29.61 3.66
210 211 0.575390 GGCGACGATGGTTAACGATG 59.425 55.000 7.93 3.65 0.00 3.84
225 226 3.703001 ACGATGAGGTGGAGATGTTTT 57.297 42.857 0.00 0.00 0.00 2.43
226 227 3.600388 ACGATGAGGTGGAGATGTTTTC 58.400 45.455 0.00 0.00 0.00 2.29
241 242 6.145535 AGATGTTTTCAAGATTTGCTCGTTC 58.854 36.000 0.00 0.00 0.00 3.95
246 247 7.918033 TGTTTTCAAGATTTGCTCGTTCAAATA 59.082 29.630 14.26 1.50 44.15 1.40
251 252 7.803189 TCAAGATTTGCTCGTTCAAATACTTTC 59.197 33.333 14.26 6.27 44.15 2.62
255 256 3.678072 TGCTCGTTCAAATACTTTCTCCG 59.322 43.478 0.00 0.00 0.00 4.63
256 257 3.924686 GCTCGTTCAAATACTTTCTCCGA 59.075 43.478 0.00 0.00 0.00 4.55
257 258 4.031878 GCTCGTTCAAATACTTTCTCCGAG 59.968 45.833 0.00 0.00 41.44 4.63
258 259 4.491676 TCGTTCAAATACTTTCTCCGAGG 58.508 43.478 0.00 0.00 0.00 4.63
259 260 4.219070 TCGTTCAAATACTTTCTCCGAGGA 59.781 41.667 0.00 0.00 0.00 3.71
260 261 4.563184 CGTTCAAATACTTTCTCCGAGGAG 59.437 45.833 12.78 12.78 43.21 3.69
268 269 3.690487 TCTCCGAGGAGACGATCTC 57.310 57.895 17.24 6.50 45.26 2.75
269 270 0.831307 TCTCCGAGGAGACGATCTCA 59.169 55.000 17.24 0.00 45.12 3.27
270 271 1.202592 TCTCCGAGGAGACGATCTCAG 60.203 57.143 17.24 5.60 45.12 3.35
271 272 0.542333 TCCGAGGAGACGATCTCAGT 59.458 55.000 14.26 4.03 45.12 3.41
272 273 1.761198 TCCGAGGAGACGATCTCAGTA 59.239 52.381 14.26 0.00 45.12 2.74
273 274 2.169978 TCCGAGGAGACGATCTCAGTAA 59.830 50.000 14.26 0.00 45.12 2.24
274 275 2.943690 CCGAGGAGACGATCTCAGTAAA 59.056 50.000 14.26 0.00 45.12 2.01
275 276 3.377485 CCGAGGAGACGATCTCAGTAAAA 59.623 47.826 14.26 0.00 45.12 1.52
276 277 4.142447 CCGAGGAGACGATCTCAGTAAAAA 60.142 45.833 14.26 0.00 45.12 1.94
294 295 3.587797 AAAAGGAGACGATCGCAGTAA 57.412 42.857 16.60 0.00 0.00 2.24
297 298 3.085443 AGGAGACGATCGCAGTAAATG 57.915 47.619 16.60 0.00 0.00 2.32
298 299 2.688446 AGGAGACGATCGCAGTAAATGA 59.312 45.455 16.60 0.00 0.00 2.57
299 300 3.130516 AGGAGACGATCGCAGTAAATGAA 59.869 43.478 16.60 0.00 0.00 2.57
301 302 4.149046 GGAGACGATCGCAGTAAATGAATC 59.851 45.833 16.60 0.06 0.00 2.52
302 303 4.938080 AGACGATCGCAGTAAATGAATCT 58.062 39.130 16.60 2.69 0.00 2.40
303 304 4.979197 AGACGATCGCAGTAAATGAATCTC 59.021 41.667 16.60 0.00 0.00 2.75
304 305 4.938080 ACGATCGCAGTAAATGAATCTCT 58.062 39.130 16.60 0.00 0.00 3.10
373 422 2.521547 AAGAGGGGAAAAGATGGCAG 57.478 50.000 0.00 0.00 0.00 4.85
374 423 0.033699 AGAGGGGAAAAGATGGCAGC 60.034 55.000 0.00 0.00 0.00 5.25
397 446 1.959282 AGCCTCAAACTTTTCCTGCAG 59.041 47.619 6.78 6.78 0.00 4.41
400 449 3.480470 CCTCAAACTTTTCCTGCAGAGA 58.520 45.455 17.39 8.13 0.00 3.10
404 453 3.515602 AACTTTTCCTGCAGAGACCAT 57.484 42.857 17.39 0.00 0.00 3.55
407 456 4.583871 ACTTTTCCTGCAGAGACCATAAG 58.416 43.478 17.39 10.51 0.00 1.73
411 460 3.027412 TCCTGCAGAGACCATAAGAGAC 58.973 50.000 17.39 0.00 0.00 3.36
412 461 3.030291 CCTGCAGAGACCATAAGAGACT 58.970 50.000 17.39 0.00 0.00 3.24
461 521 1.588932 CATCTGCGTACGTCGGCAT 60.589 57.895 17.90 7.22 40.26 4.40
462 522 1.299165 ATCTGCGTACGTCGGCATC 60.299 57.895 17.90 0.00 40.26 3.91
484 546 0.472471 TTCCTTCCCTCGCACACTTT 59.528 50.000 0.00 0.00 0.00 2.66
613 1387 4.317769 CGGAAAAACAAAGCCGAAAATCAC 60.318 41.667 0.00 0.00 46.29 3.06
614 1388 4.025229 GGAAAAACAAAGCCGAAAATCACC 60.025 41.667 0.00 0.00 0.00 4.02
783 1575 2.374525 ACAGAGGCCACACCACACA 61.375 57.895 5.01 0.00 43.14 3.72
795 1610 3.983562 CACACACACCGACGCGTG 61.984 66.667 20.70 5.54 39.75 5.34
915 1759 1.070909 CAAACCCAAACATTTTCGCGC 60.071 47.619 0.00 0.00 0.00 6.86
1003 1847 3.335729 AGGCCCCAAACCCTACGG 61.336 66.667 0.00 0.00 0.00 4.02
1092 1941 3.764466 CTGCTCGACGGAAGGCCT 61.764 66.667 0.00 0.00 33.32 5.19
1166 2038 4.210304 GACAAGATCACGGCGCGC 62.210 66.667 25.94 25.94 0.00 6.86
1374 2256 1.306226 CTCTTCCCTTCCCTCCCGT 60.306 63.158 0.00 0.00 0.00 5.28
1420 2307 2.285083 TCCTGACTGACGGTTTGTTTG 58.715 47.619 0.00 0.00 0.00 2.93
1421 2308 1.268539 CCTGACTGACGGTTTGTTTGC 60.269 52.381 0.00 0.00 0.00 3.68
1427 2314 2.426752 CGGTTTGTTTGCCGCTCG 60.427 61.111 0.00 0.00 41.53 5.03
1518 2405 1.227853 AGTCACCACGCCTGTTTCC 60.228 57.895 0.00 0.00 0.00 3.13
1699 2622 2.428530 GCCCATTTCTGACAGGAAATCC 59.571 50.000 0.00 0.00 42.02 3.01
1741 3032 0.402887 TGTAGATCGATAGGCGGGGA 59.597 55.000 0.00 0.00 41.33 4.81
1744 3035 0.469331 AGATCGATAGGCGGGGAACA 60.469 55.000 0.00 0.00 41.33 3.18
1749 3040 1.380785 ATAGGCGGGGAACAGTCGA 60.381 57.895 0.00 0.00 34.35 4.20
1754 3045 1.342174 GGCGGGGAACAGTCGAATATA 59.658 52.381 0.00 0.00 0.00 0.86
1845 3189 2.461300 TCTAGTATGCCCTGCTCTGT 57.539 50.000 0.00 0.00 0.00 3.41
1898 3342 1.097232 TAACATGTGCCATGCTGCTC 58.903 50.000 13.19 0.00 0.00 4.26
1917 3393 4.641541 TGCTCCTGATATTGTGACATTTGG 59.358 41.667 0.00 0.00 0.00 3.28
1930 3406 1.247567 CATTTGGTTCCAGAACGCCT 58.752 50.000 4.54 0.00 42.02 5.52
1935 3411 1.446272 GTTCCAGAACGCCTCTCGG 60.446 63.158 0.00 0.00 43.86 4.63
1986 3462 4.608951 ACTTCGATTATGACTACTTCGGC 58.391 43.478 0.00 0.00 0.00 5.54
2040 3516 0.105964 TTGGTGGAGTTGTCGTGGAG 59.894 55.000 0.00 0.00 0.00 3.86
2243 3719 8.303156 CAATGTGAACCATGGATTTGTTTACTA 58.697 33.333 21.47 0.89 32.82 1.82
2268 3751 5.407387 ACAGTTTCAATTTTCATGATGCAGC 59.593 36.000 0.00 0.00 0.00 5.25
2489 3975 6.903419 TGATACTGCTCGTTATGTAGATCAG 58.097 40.000 0.00 0.00 36.86 2.90
2521 4007 3.816994 AGAGAAAGGGTGCGTTTTACTT 58.183 40.909 0.00 0.00 0.00 2.24
2542 4029 7.730364 ACTTGTCTGTTAACAGTTCTTATGG 57.270 36.000 29.83 16.75 44.12 2.74
2578 4068 7.776933 TCCATAGTCTTCTGAAATTCATTCG 57.223 36.000 0.00 0.00 41.18 3.34
2585 4075 8.072567 AGTCTTCTGAAATTCATTCGTTCTTTG 58.927 33.333 0.00 0.00 41.18 2.77
2734 4226 5.682943 TTTGAAACTGAAGTCCATAACCG 57.317 39.130 0.00 0.00 0.00 4.44
2742 4234 5.768164 ACTGAAGTCCATAACCGTTCAAATT 59.232 36.000 0.00 0.00 0.00 1.82
2815 4312 3.434167 CCCATAGTACAGATGCCTTTGCT 60.434 47.826 0.00 0.00 38.71 3.91
2819 4316 4.559862 AGTACAGATGCCTTTGCTAGTT 57.440 40.909 0.00 0.00 38.71 2.24
3151 4654 2.681064 TTGGCTGATTGCTGGGGC 60.681 61.111 0.00 0.00 42.39 5.80
3166 4669 0.391793 GGGGCGAGAAGTTTGAGGAG 60.392 60.000 0.00 0.00 0.00 3.69
3334 4840 5.356882 TTTTGAAGGCACAGATAGAAACG 57.643 39.130 0.00 0.00 0.00 3.60
3463 4988 8.216423 ACTCTTATTTATCTGCAGGATTCATGT 58.784 33.333 15.13 0.00 35.98 3.21
3496 5021 3.494378 CAGCAGAATCTGGGCACG 58.506 61.111 12.66 0.00 31.21 5.34
4283 5827 7.956943 GTCCAATTTTCAAAACAGAAAACAGTG 59.043 33.333 4.23 0.00 46.63 3.66
4300 5844 4.215109 ACAGTGTAATGTTGCCTTTCCTT 58.785 39.130 0.00 0.00 0.00 3.36
4607 6429 6.183360 GCTTTGAACCCTACACATCTAACATC 60.183 42.308 0.00 0.00 0.00 3.06
5184 7056 5.806654 ATGGTGTGCTTAATCTTTGGTTT 57.193 34.783 0.00 0.00 0.00 3.27
5188 7060 4.209080 GTGTGCTTAATCTTTGGTTTGTGC 59.791 41.667 0.00 0.00 0.00 4.57
5260 7132 4.829064 TGCAATCAAGTTTACTGTGGAC 57.171 40.909 0.00 0.00 0.00 4.02
5296 7168 2.073816 GTCAATGGGGTACGTGTTCTG 58.926 52.381 0.00 0.00 0.00 3.02
5298 7170 0.322187 AATGGGGTACGTGTTCTGGC 60.322 55.000 0.00 0.00 0.00 4.85
5300 7172 2.745037 GGGTACGTGTTCTGGCCA 59.255 61.111 4.71 4.71 0.00 5.36
5323 7195 2.286831 CGGCTCTGCATCTATTTTGCTG 60.287 50.000 0.00 0.00 40.77 4.41
5338 7210 0.550914 TGCTGTCTTTCCAACCCAGT 59.449 50.000 0.00 0.00 0.00 4.00
5375 7247 7.563906 TCACCACTCATAATGAATACACATGA 58.436 34.615 0.00 0.00 33.08 3.07
5444 7325 3.677424 GCAAACTAGCAGAGGAAGACGAT 60.677 47.826 0.00 0.00 0.00 3.73
5522 7403 3.810579 CGGGAGCTAGATGCATCTC 57.189 57.895 31.92 18.85 45.94 2.75
5568 7449 1.067635 GGCAGGCATTACACAACCAAG 60.068 52.381 0.00 0.00 0.00 3.61
5569 7450 1.613437 GCAGGCATTACACAACCAAGT 59.387 47.619 0.00 0.00 0.00 3.16
5609 7491 6.089551 CGTTGAATAATTGAGAAGTGAGTCGT 59.910 38.462 0.00 0.00 0.00 4.34
5610 7492 7.359264 CGTTGAATAATTGAGAAGTGAGTCGTT 60.359 37.037 0.00 0.00 0.00 3.85
5611 7493 7.962964 TGAATAATTGAGAAGTGAGTCGTTT 57.037 32.000 0.00 0.00 0.00 3.60
5612 7494 9.483916 TTGAATAATTGAGAAGTGAGTCGTTTA 57.516 29.630 0.00 0.00 0.00 2.01
5745 7629 0.251297 ATGGGTTGCTGCAGCTGTAA 60.251 50.000 36.61 21.79 42.66 2.41
5746 7630 0.251297 TGGGTTGCTGCAGCTGTAAT 60.251 50.000 36.61 0.00 42.66 1.89
5747 7631 0.171903 GGGTTGCTGCAGCTGTAATG 59.828 55.000 36.61 0.62 42.66 1.90
5748 7632 0.883833 GGTTGCTGCAGCTGTAATGT 59.116 50.000 36.61 0.00 42.66 2.71
5749 7633 2.083774 GGTTGCTGCAGCTGTAATGTA 58.916 47.619 36.61 13.65 42.66 2.29
5805 7691 3.749088 TCCCGTTGTTGCTGTTATACTTG 59.251 43.478 0.00 0.00 0.00 3.16
5869 7755 5.640147 TCCTGTCAATTTGTCTATGGGTTT 58.360 37.500 0.00 0.00 0.00 3.27
5891 7777 0.035458 ACTAGAACTGGCGCTGCTTT 59.965 50.000 7.64 0.00 0.00 3.51
5900 7786 4.234574 ACTGGCGCTGCTTTTTAATAAAC 58.765 39.130 7.64 0.00 0.00 2.01
5906 7792 5.791480 GCGCTGCTTTTTAATAAACGAGTAA 59.209 36.000 0.00 0.00 0.00 2.24
5920 7806 3.019564 ACGAGTAATAGCCCTTGTACGT 58.980 45.455 0.00 0.00 0.00 3.57
5938 7824 2.159043 ACGTTGGGAGAGATATGCACTG 60.159 50.000 0.00 0.00 0.00 3.66
5949 7835 6.462500 AGAGATATGCACTGATAATGTGACC 58.538 40.000 0.00 0.00 37.60 4.02
6001 7887 9.736414 CCTCTATCACTCCAAATTGATGAATAT 57.264 33.333 0.00 0.00 34.28 1.28
6042 7928 8.862325 TCTCCATGTTATTGTCAAGTTTATGT 57.138 30.769 0.00 0.00 0.00 2.29
6043 7929 8.729756 TCTCCATGTTATTGTCAAGTTTATGTG 58.270 33.333 0.00 0.00 0.00 3.21
6044 7930 7.825681 TCCATGTTATTGTCAAGTTTATGTGG 58.174 34.615 0.00 0.00 0.00 4.17
6045 7931 7.667635 TCCATGTTATTGTCAAGTTTATGTGGA 59.332 33.333 0.00 0.00 0.00 4.02
6048 7934 9.859427 ATGTTATTGTCAAGTTTATGTGGATTG 57.141 29.630 0.00 0.00 0.00 2.67
6049 7935 9.072375 TGTTATTGTCAAGTTTATGTGGATTGA 57.928 29.630 0.00 0.00 0.00 2.57
6050 7936 9.341899 GTTATTGTCAAGTTTATGTGGATTGAC 57.658 33.333 8.93 8.93 46.25 3.18
6051 7937 7.765695 ATTGTCAAGTTTATGTGGATTGACT 57.234 32.000 15.07 0.00 46.23 3.41
6052 7938 8.862325 ATTGTCAAGTTTATGTGGATTGACTA 57.138 30.769 15.07 9.57 46.23 2.59
6054 7940 6.371548 TGTCAAGTTTATGTGGATTGACTAGC 59.628 38.462 15.07 0.00 46.23 3.42
6055 7941 5.880332 TCAAGTTTATGTGGATTGACTAGCC 59.120 40.000 0.00 0.00 0.00 3.93
6056 7942 4.781934 AGTTTATGTGGATTGACTAGCCC 58.218 43.478 0.00 0.00 0.00 5.19
6057 7943 4.475016 AGTTTATGTGGATTGACTAGCCCT 59.525 41.667 0.00 0.00 0.00 5.19
6059 7945 5.450818 TTATGTGGATTGACTAGCCCTTT 57.549 39.130 0.00 0.00 0.00 3.11
6060 7946 3.806949 TGTGGATTGACTAGCCCTTTT 57.193 42.857 0.00 0.00 0.00 2.27
6061 7947 3.686016 TGTGGATTGACTAGCCCTTTTC 58.314 45.455 0.00 0.00 0.00 2.29
6063 7949 4.263905 TGTGGATTGACTAGCCCTTTTCAT 60.264 41.667 0.00 0.00 0.00 2.57
6064 7950 4.096984 GTGGATTGACTAGCCCTTTTCATG 59.903 45.833 0.00 0.00 0.00 3.07
6065 7951 3.067320 GGATTGACTAGCCCTTTTCATGC 59.933 47.826 0.00 0.00 0.00 4.06
6066 7952 3.439857 TTGACTAGCCCTTTTCATGCT 57.560 42.857 0.00 0.00 39.10 3.79
6067 7953 3.439857 TGACTAGCCCTTTTCATGCTT 57.560 42.857 0.00 0.00 36.57 3.91
6068 7954 3.084039 TGACTAGCCCTTTTCATGCTTG 58.916 45.455 0.00 0.00 36.57 4.01
6069 7955 2.424956 GACTAGCCCTTTTCATGCTTGG 59.575 50.000 0.00 0.00 36.57 3.61
6071 7957 1.260544 AGCCCTTTTCATGCTTGGAC 58.739 50.000 0.00 0.00 29.17 4.02
6073 7959 1.620323 GCCCTTTTCATGCTTGGACTT 59.380 47.619 0.00 0.00 0.00 3.01
6074 7960 2.037641 GCCCTTTTCATGCTTGGACTTT 59.962 45.455 0.00 0.00 0.00 2.66
6075 7961 3.494924 GCCCTTTTCATGCTTGGACTTTT 60.495 43.478 0.00 0.00 0.00 2.27
6076 7962 4.060205 CCCTTTTCATGCTTGGACTTTTG 58.940 43.478 0.00 0.00 0.00 2.44
6077 7963 4.060205 CCTTTTCATGCTTGGACTTTTGG 58.940 43.478 0.00 0.00 0.00 3.28
6079 7965 4.751767 TTTCATGCTTGGACTTTTGGTT 57.248 36.364 0.00 0.00 0.00 3.67
6080 7966 3.731652 TCATGCTTGGACTTTTGGTTG 57.268 42.857 0.00 0.00 0.00 3.77
6081 7967 2.137523 CATGCTTGGACTTTTGGTTGC 58.862 47.619 0.00 0.00 0.00 4.17
6084 7970 1.470805 GCTTGGACTTTTGGTTGCGTT 60.471 47.619 0.00 0.00 0.00 4.84
6087 7973 1.133407 TGGACTTTTGGTTGCGTTGAC 59.867 47.619 0.00 0.00 0.00 3.18
6090 9570 3.303791 GGACTTTTGGTTGCGTTGACTAG 60.304 47.826 0.00 0.00 0.00 2.57
6174 9841 3.769300 ACCAAATTGGAGATGCCCTTAAC 59.231 43.478 20.25 0.00 40.96 2.01
6233 9900 2.493278 GCCTTGTCTTATGCACAATGGT 59.507 45.455 0.00 0.00 33.30 3.55
6255 9922 4.020128 GTGTGGAGTCCCTTTTATCTGTCT 60.020 45.833 6.74 0.00 0.00 3.41
6257 9924 5.187186 TGTGGAGTCCCTTTTATCTGTCTAC 59.813 44.000 6.74 0.00 0.00 2.59
6265 9932 5.163395 CCCTTTTATCTGTCTACCTGACCTC 60.163 48.000 0.00 0.00 44.75 3.85
6267 9934 6.098982 CCTTTTATCTGTCTACCTGACCTCAT 59.901 42.308 0.00 0.00 44.75 2.90
6268 9935 7.287927 CCTTTTATCTGTCTACCTGACCTCATA 59.712 40.741 0.00 0.00 44.75 2.15
6269 9936 7.825331 TTTATCTGTCTACCTGACCTCATAG 57.175 40.000 0.00 0.00 44.75 2.23
6272 9939 4.950475 TCTGTCTACCTGACCTCATAGTTG 59.050 45.833 0.00 0.00 44.75 3.16
6275 9942 5.542635 TGTCTACCTGACCTCATAGTTGTTT 59.457 40.000 0.00 0.00 44.75 2.83
6277 9944 6.935208 GTCTACCTGACCTCATAGTTGTTTTT 59.065 38.462 0.00 0.00 39.69 1.94
6297 9964 1.667830 CTCGCGGAAACCTGCTCAA 60.668 57.895 6.13 0.00 0.00 3.02
6298 9965 1.003839 TCGCGGAAACCTGCTCAAT 60.004 52.632 6.13 0.00 0.00 2.57
6302 9969 0.804989 CGGAAACCTGCTCAATGGTC 59.195 55.000 0.00 0.00 35.17 4.02
6308 9975 3.788227 ACCTGCTCAATGGTCAGTTTA 57.212 42.857 0.00 0.00 29.18 2.01
6309 9976 3.412386 ACCTGCTCAATGGTCAGTTTAC 58.588 45.455 0.00 0.00 29.18 2.01
6366 10036 4.243793 TCCTTTTCTTTTGAGGGTGACA 57.756 40.909 0.00 0.00 0.00 3.58
6369 10039 4.021981 CCTTTTCTTTTGAGGGTGACATCC 60.022 45.833 0.00 0.00 41.42 3.51
6440 10110 1.971357 TCCAAGGACTGACACCTCTTC 59.029 52.381 0.00 0.00 36.67 2.87
6459 10130 6.151648 CCTCTTCACCTTGCTCAAAATATGAA 59.848 38.462 0.00 0.00 37.67 2.57
6467 10138 8.587608 ACCTTGCTCAAAATATGAATTCAAGAA 58.412 29.630 13.09 1.51 39.63 2.52
6499 10170 9.474920 TCATTTCAAATCTTCAACACCAATAAC 57.525 29.630 0.00 0.00 0.00 1.89
6521 10192 4.530094 GACATGATCGGCATAACGAAAA 57.470 40.909 0.00 0.00 46.92 2.29
6557 10228 3.145286 TCAAACATCTCGCCACATTTCA 58.855 40.909 0.00 0.00 0.00 2.69
6562 10233 0.036388 TCTCGCCACATTTCACCCTC 60.036 55.000 0.00 0.00 0.00 4.30
6563 10234 1.361668 CTCGCCACATTTCACCCTCG 61.362 60.000 0.00 0.00 0.00 4.63
6564 10235 2.398554 CGCCACATTTCACCCTCGG 61.399 63.158 0.00 0.00 0.00 4.63
6565 10236 1.303317 GCCACATTTCACCCTCGGT 60.303 57.895 0.00 0.00 35.62 4.69
6566 10237 1.305930 GCCACATTTCACCCTCGGTC 61.306 60.000 0.00 0.00 31.02 4.79
6567 10238 0.324943 CCACATTTCACCCTCGGTCT 59.675 55.000 0.00 0.00 31.02 3.85
6568 10239 1.442769 CACATTTCACCCTCGGTCTG 58.557 55.000 0.00 0.00 31.02 3.51
6569 10240 0.321653 ACATTTCACCCTCGGTCTGC 60.322 55.000 0.00 0.00 31.02 4.26
6570 10241 0.036010 CATTTCACCCTCGGTCTGCT 60.036 55.000 0.00 0.00 31.02 4.24
6571 10242 0.036010 ATTTCACCCTCGGTCTGCTG 60.036 55.000 0.00 0.00 31.02 4.41
6572 10243 1.407656 TTTCACCCTCGGTCTGCTGT 61.408 55.000 0.00 0.00 31.02 4.40
6606 10277 4.460382 GTCAGGCCAAATGAAGAAGATGAA 59.540 41.667 5.01 0.00 0.00 2.57
6607 10278 5.047802 GTCAGGCCAAATGAAGAAGATGAAA 60.048 40.000 5.01 0.00 0.00 2.69
6608 10279 5.718130 TCAGGCCAAATGAAGAAGATGAAAT 59.282 36.000 5.01 0.00 0.00 2.17
6609 10280 5.810587 CAGGCCAAATGAAGAAGATGAAATG 59.189 40.000 5.01 0.00 0.00 2.32
6610 10281 5.718130 AGGCCAAATGAAGAAGATGAAATGA 59.282 36.000 5.01 0.00 0.00 2.57
6611 10282 6.383147 AGGCCAAATGAAGAAGATGAAATGAT 59.617 34.615 5.01 0.00 0.00 2.45
6612 10283 6.700520 GGCCAAATGAAGAAGATGAAATGATC 59.299 38.462 0.00 0.00 0.00 2.92
6613 10284 6.417044 GCCAAATGAAGAAGATGAAATGATCG 59.583 38.462 0.00 0.00 0.00 3.69
6614 10285 7.680350 GCCAAATGAAGAAGATGAAATGATCGA 60.680 37.037 0.00 0.00 0.00 3.59
6615 10286 7.642978 CCAAATGAAGAAGATGAAATGATCGAC 59.357 37.037 0.00 0.00 0.00 4.20
6616 10287 6.857777 ATGAAGAAGATGAAATGATCGACC 57.142 37.500 0.00 0.00 0.00 4.79
6617 10288 4.805719 TGAAGAAGATGAAATGATCGACCG 59.194 41.667 0.00 0.00 0.00 4.79
6618 10289 4.392921 AGAAGATGAAATGATCGACCGT 57.607 40.909 0.00 0.00 0.00 4.83
6619 10290 5.515797 AGAAGATGAAATGATCGACCGTA 57.484 39.130 0.00 0.00 0.00 4.02
6627 10298 4.673534 AATGATCGACCGTAACCAAAAC 57.326 40.909 0.00 0.00 0.00 2.43
6635 10306 3.954999 ACCGTAACCAAAACAAATCACG 58.045 40.909 0.00 0.00 0.00 4.35
6648 10319 4.170256 ACAAATCACGGAACAACACAAAC 58.830 39.130 0.00 0.00 0.00 2.93
6713 10384 3.230567 GCGAAATTTGCGCGACCG 61.231 61.111 12.10 3.23 45.27 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 8.893727 GCAAACATAGTGTTGAGTATAAGGATT 58.106 33.333 0.00 0.00 40.14 3.01
14 15 8.046708 TGCAAACATAGTGTTGAGTATAAGGAT 58.953 33.333 0.00 0.00 40.14 3.24
15 16 7.390823 TGCAAACATAGTGTTGAGTATAAGGA 58.609 34.615 0.00 0.00 40.14 3.36
16 17 7.609760 TGCAAACATAGTGTTGAGTATAAGG 57.390 36.000 0.00 0.00 40.14 2.69
17 18 9.891828 TTTTGCAAACATAGTGTTGAGTATAAG 57.108 29.630 12.39 0.00 40.14 1.73
19 20 9.891828 CTTTTTGCAAACATAGTGTTGAGTATA 57.108 29.630 12.39 0.00 40.14 1.47
20 21 7.867403 CCTTTTTGCAAACATAGTGTTGAGTAT 59.133 33.333 12.39 0.00 40.14 2.12
21 22 7.199766 CCTTTTTGCAAACATAGTGTTGAGTA 58.800 34.615 12.39 0.00 40.14 2.59
22 23 6.042143 CCTTTTTGCAAACATAGTGTTGAGT 58.958 36.000 12.39 0.00 40.14 3.41
23 24 5.050837 GCCTTTTTGCAAACATAGTGTTGAG 60.051 40.000 12.39 0.00 40.14 3.02
24 25 4.808364 GCCTTTTTGCAAACATAGTGTTGA 59.192 37.500 12.39 0.00 40.14 3.18
25 26 4.569966 TGCCTTTTTGCAAACATAGTGTTG 59.430 37.500 12.39 0.00 40.14 3.33
26 27 4.570369 GTGCCTTTTTGCAAACATAGTGTT 59.430 37.500 12.39 0.00 44.11 3.32
27 28 4.119136 GTGCCTTTTTGCAAACATAGTGT 58.881 39.130 12.39 0.00 44.11 3.55
28 29 4.118410 TGTGCCTTTTTGCAAACATAGTG 58.882 39.130 12.39 5.57 44.11 2.74
29 30 4.399004 TGTGCCTTTTTGCAAACATAGT 57.601 36.364 12.39 0.00 44.11 2.12
41 42 2.739609 GCTGCAGAAACTTGTGCCTTTT 60.740 45.455 20.43 0.00 45.84 2.27
74 75 6.108015 TCAAGTGAACTGGTACGTAGTTTTT 58.892 36.000 13.35 7.77 37.78 1.94
75 76 5.663456 TCAAGTGAACTGGTACGTAGTTTT 58.337 37.500 13.35 4.29 37.78 2.43
80 81 4.508861 GCTTTTCAAGTGAACTGGTACGTA 59.491 41.667 0.00 0.00 33.13 3.57
98 99 4.241681 TCAGCAACTTCAAAAACGCTTTT 58.758 34.783 0.00 0.00 35.02 2.27
104 105 4.324402 CGGCATATCAGCAACTTCAAAAAC 59.676 41.667 0.00 0.00 35.83 2.43
107 108 3.126858 GTCGGCATATCAGCAACTTCAAA 59.873 43.478 0.00 0.00 35.83 2.69
114 115 1.140652 TCATGGTCGGCATATCAGCAA 59.859 47.619 0.00 0.00 35.83 3.91
115 116 0.758123 TCATGGTCGGCATATCAGCA 59.242 50.000 0.00 0.00 35.83 4.41
116 117 2.105006 ATCATGGTCGGCATATCAGC 57.895 50.000 0.00 0.00 0.00 4.26
117 118 4.159321 ACTCTATCATGGTCGGCATATCAG 59.841 45.833 0.00 0.00 0.00 2.90
118 119 4.089361 ACTCTATCATGGTCGGCATATCA 58.911 43.478 0.00 0.00 0.00 2.15
119 120 4.727507 ACTCTATCATGGTCGGCATATC 57.272 45.455 0.00 0.00 0.00 1.63
120 121 4.284490 ACAACTCTATCATGGTCGGCATAT 59.716 41.667 0.00 0.00 0.00 1.78
121 122 3.641436 ACAACTCTATCATGGTCGGCATA 59.359 43.478 0.00 0.00 0.00 3.14
122 123 2.435805 ACAACTCTATCATGGTCGGCAT 59.564 45.455 0.00 0.00 0.00 4.40
126 127 5.460419 GCTAAGAACAACTCTATCATGGTCG 59.540 44.000 0.00 0.00 35.93 4.79
134 135 6.344500 CACTGATGGCTAAGAACAACTCTAT 58.656 40.000 0.00 0.00 32.46 1.98
146 147 3.517296 TTGAAACCCACTGATGGCTAA 57.483 42.857 0.00 0.00 45.76 3.09
155 156 0.033366 GCCGCAAATTGAAACCCACT 59.967 50.000 0.00 0.00 0.00 4.00
158 159 0.389817 GGAGCCGCAAATTGAAACCC 60.390 55.000 0.00 0.00 0.00 4.11
161 162 1.614996 TCAGGAGCCGCAAATTGAAA 58.385 45.000 0.00 0.00 0.00 2.69
163 164 1.838112 ATTCAGGAGCCGCAAATTGA 58.162 45.000 0.00 0.00 0.00 2.57
166 167 2.170166 TCAAATTCAGGAGCCGCAAAT 58.830 42.857 0.00 0.00 0.00 2.32
167 168 1.614996 TCAAATTCAGGAGCCGCAAA 58.385 45.000 0.00 0.00 0.00 3.68
210 211 6.385033 CAAATCTTGAAAACATCTCCACCTC 58.615 40.000 0.00 0.00 0.00 3.85
225 226 6.801539 AGTATTTGAACGAGCAAATCTTGA 57.198 33.333 18.41 4.51 43.03 3.02
226 227 7.805071 AGAAAGTATTTGAACGAGCAAATCTTG 59.195 33.333 18.41 0.00 43.03 3.02
251 252 1.225855 CTGAGATCGTCTCCTCGGAG 58.774 60.000 6.63 6.63 42.73 4.63
273 274 2.457366 ACTGCGATCGTCTCCTTTTT 57.543 45.000 17.81 0.00 0.00 1.94
274 275 3.587797 TTACTGCGATCGTCTCCTTTT 57.412 42.857 17.81 0.00 0.00 2.27
275 276 3.587797 TTTACTGCGATCGTCTCCTTT 57.412 42.857 17.81 0.00 0.00 3.11
276 277 3.130516 TCATTTACTGCGATCGTCTCCTT 59.869 43.478 17.81 0.00 0.00 3.36
284 285 5.438972 GCAAGAGATTCATTTACTGCGATC 58.561 41.667 0.00 0.00 0.00 3.69
287 288 3.062639 ACGCAAGAGATTCATTTACTGCG 59.937 43.478 11.15 11.15 45.73 5.18
294 295 5.181009 TCAGATTCACGCAAGAGATTCATT 58.819 37.500 0.00 0.00 38.98 2.57
297 298 4.629200 AGTTCAGATTCACGCAAGAGATTC 59.371 41.667 0.00 0.00 43.62 2.52
298 299 4.573900 AGTTCAGATTCACGCAAGAGATT 58.426 39.130 0.00 0.00 43.62 2.40
299 300 4.199432 AGTTCAGATTCACGCAAGAGAT 57.801 40.909 0.00 0.00 43.62 2.75
301 302 4.665142 CGAAAGTTCAGATTCACGCAAGAG 60.665 45.833 0.00 0.00 43.62 2.85
302 303 3.184379 CGAAAGTTCAGATTCACGCAAGA 59.816 43.478 0.00 0.00 43.62 3.02
303 304 3.059597 ACGAAAGTTCAGATTCACGCAAG 60.060 43.478 0.00 0.00 46.40 4.01
304 305 2.869801 ACGAAAGTTCAGATTCACGCAA 59.130 40.909 0.00 0.00 46.40 4.85
356 390 1.379642 CGCTGCCATCTTTTCCCCTC 61.380 60.000 0.00 0.00 0.00 4.30
373 422 0.664466 GGAAAAGTTTGAGGCTGCGC 60.664 55.000 0.00 0.00 0.00 6.09
374 423 0.954452 AGGAAAAGTTTGAGGCTGCG 59.046 50.000 0.00 0.00 0.00 5.18
385 434 4.287067 TCTTATGGTCTCTGCAGGAAAAGT 59.713 41.667 15.13 0.00 0.00 2.66
391 440 3.030291 AGTCTCTTATGGTCTCTGCAGG 58.970 50.000 15.13 4.77 0.00 4.85
397 446 4.839668 ATGCGTAGTCTCTTATGGTCTC 57.160 45.455 0.00 0.00 0.00 3.36
400 449 6.537660 GGTAAAAATGCGTAGTCTCTTATGGT 59.462 38.462 0.00 0.00 0.00 3.55
404 453 6.588756 CAGTGGTAAAAATGCGTAGTCTCTTA 59.411 38.462 0.00 0.00 0.00 2.10
407 456 4.092968 CCAGTGGTAAAAATGCGTAGTCTC 59.907 45.833 0.00 0.00 0.00 3.36
411 460 2.159435 GGCCAGTGGTAAAAATGCGTAG 60.159 50.000 11.74 0.00 0.00 3.51
412 461 1.813786 GGCCAGTGGTAAAAATGCGTA 59.186 47.619 11.74 0.00 0.00 4.42
461 521 2.602267 TGCGAGGGAAGGAACCGA 60.602 61.111 0.00 0.00 0.00 4.69
462 522 2.434359 GTGCGAGGGAAGGAACCG 60.434 66.667 0.00 0.00 0.00 4.44
532 1306 0.461961 GACCGTTGAGATCTGGAGGG 59.538 60.000 0.00 6.04 0.00 4.30
592 1366 4.025229 GGGTGATTTTCGGCTTTGTTTTTC 60.025 41.667 0.00 0.00 0.00 2.29
743 1518 4.083862 GGGGGCTGACGAGTGGTC 62.084 72.222 0.00 0.00 46.27 4.02
761 1553 2.980233 GGTGTGGCCTCTGTGTGC 60.980 66.667 3.32 0.00 0.00 4.57
763 1555 2.374525 TGTGGTGTGGCCTCTGTGT 61.375 57.895 3.32 0.00 38.35 3.72
766 1558 1.893808 GTGTGTGGTGTGGCCTCTG 60.894 63.158 3.32 0.00 38.35 3.35
771 1563 3.582120 CGGTGTGTGTGGTGTGGC 61.582 66.667 0.00 0.00 0.00 5.01
772 1564 2.177580 GTCGGTGTGTGTGGTGTGG 61.178 63.158 0.00 0.00 0.00 4.17
890 1734 2.900716 AAATGTTTGGGTTTGGACGG 57.099 45.000 0.00 0.00 0.00 4.79
925 1769 4.438744 GGCCGCCAATAATTATACAGATGC 60.439 45.833 3.91 0.00 0.00 3.91
927 1771 4.943705 CAGGCCGCCAATAATTATACAGAT 59.056 41.667 13.15 0.00 0.00 2.90
930 1774 3.417101 CCAGGCCGCCAATAATTATACA 58.583 45.455 13.15 0.00 0.00 2.29
1029 1874 1.289244 GGATGGATTGGGTGAGGGGT 61.289 60.000 0.00 0.00 0.00 4.95
1092 1941 1.028330 ACGTACATCTTCGCCTCGGA 61.028 55.000 0.00 0.00 0.00 4.55
1166 2038 1.470632 CCGTAGCTGAGCTTCTTGAGG 60.471 57.143 14.14 0.00 40.44 3.86
1518 2405 2.508867 CAACAGAACGAAATCATGGCG 58.491 47.619 0.00 0.00 0.00 5.69
1730 3021 1.067582 CGACTGTTCCCCGCCTATC 59.932 63.158 0.00 0.00 0.00 2.08
1741 3032 8.567948 CAGGGCAAAATATTATATTCGACTGTT 58.432 33.333 0.00 0.00 0.00 3.16
1744 3035 8.918202 TTCAGGGCAAAATATTATATTCGACT 57.082 30.769 0.00 0.00 0.00 4.18
1754 3045 8.040727 GGAACAGTAAATTCAGGGCAAAATATT 58.959 33.333 0.00 0.00 0.00 1.28
1804 3096 9.241919 CTAGAATACATCACATCATCCTACTCT 57.758 37.037 0.00 0.00 0.00 3.24
1845 3189 1.939934 CGTGGAACAAACAGAGCAGAA 59.060 47.619 0.00 0.00 44.16 3.02
1898 3342 5.418524 TGGAACCAAATGTCACAATATCAGG 59.581 40.000 0.00 0.00 0.00 3.86
1917 3393 4.170723 CGAGAGGCGTTCTGGAAC 57.829 61.111 3.62 3.62 35.87 3.62
1935 3411 4.802039 TCGTAAATTATCTCGCTGTCCAAC 59.198 41.667 0.00 0.00 0.00 3.77
1986 3462 2.495669 GGACCTCTCCAGAGTCTTGAAG 59.504 54.545 2.92 0.00 40.48 3.02
2040 3516 1.305219 TTAACATGTGCTGCGGCCTC 61.305 55.000 16.57 8.98 37.74 4.70
2112 3588 1.539065 CGCTGGGACATGAGATGGTAC 60.539 57.143 0.00 0.00 38.20 3.34
2243 3719 6.073440 GCTGCATCATGAAAATTGAAACTGTT 60.073 34.615 0.00 0.00 0.00 3.16
2268 3751 3.622163 CAGATAAGGAAACAGCTGCTCAG 59.378 47.826 15.27 0.00 0.00 3.35
2489 3975 0.322906 CCTTTCTCTTGCCTCCACCC 60.323 60.000 0.00 0.00 0.00 4.61
2521 4007 5.001232 GGCCATAAGAACTGTTAACAGACA 58.999 41.667 36.14 18.34 46.59 3.41
2542 4029 7.716998 TCAGAAGACTATGGAATTAGAATTGGC 59.283 37.037 0.00 0.00 0.00 4.52
2578 4068 4.948847 AGGCACCTGATTTTTCAAAGAAC 58.051 39.130 0.00 0.00 0.00 3.01
2585 4075 3.062042 CAGCAAAGGCACCTGATTTTTC 58.938 45.455 0.00 0.00 44.61 2.29
2764 4257 8.005976 ACCCTTTAAAGGTAACAGGTAAATTCA 58.994 33.333 28.41 0.00 44.98 2.57
2798 4291 4.559862 AACTAGCAAAGGCATCTGTACT 57.440 40.909 0.00 0.00 44.61 2.73
3151 4654 4.617959 TGTACAACTCCTCAAACTTCTCG 58.382 43.478 0.00 0.00 0.00 4.04
3166 4669 8.507249 ACTGCTTTCTCATATTTCTTGTACAAC 58.493 33.333 3.59 0.00 0.00 3.32
3236 4742 4.892433 CAGAAAGTGGATCACTGAAGAGT 58.108 43.478 1.01 0.00 44.62 3.24
3334 4840 2.938956 AGAGCATATAAGGTGTGCCC 57.061 50.000 0.00 0.00 45.16 5.36
3463 4988 8.548877 AGATTCTGCTGGTTACTTTTCCTATTA 58.451 33.333 0.00 0.00 0.00 0.98
3496 5021 6.143438 CAGTGCACAAGTTTGAAGATTTGATC 59.857 38.462 21.04 0.00 0.00 2.92
4283 5827 4.584327 ACACAAGGAAAGGCAACATTAC 57.416 40.909 0.00 0.00 41.41 1.89
4300 5844 6.183360 GGGAAAATTGGACAGAAAACTACACA 60.183 38.462 0.00 0.00 0.00 3.72
4607 6429 0.813184 TTAGAACCCGCCGACTGTAG 59.187 55.000 0.00 0.00 0.00 2.74
4687 6525 4.757692 TCCCCACTGGAAAAATGGTAAAT 58.242 39.130 0.00 0.00 41.40 1.40
4716 6555 3.125316 GGAGAAGATGCTTGTTAACCACG 59.875 47.826 2.48 0.00 0.00 4.94
5184 7056 1.832167 GTTTTCAGGCCCTGGCACA 60.832 57.895 11.68 0.00 44.11 4.57
5188 7060 1.607467 CCCAGTTTTCAGGCCCTGG 60.607 63.158 11.68 14.70 43.34 4.45
5260 7132 2.260844 TGACCTTCAGAAAGCCAGTG 57.739 50.000 0.00 0.00 0.00 3.66
5298 7170 2.469274 AATAGATGCAGAGCCGATGG 57.531 50.000 0.00 0.00 0.00 3.51
5300 7172 2.551459 GCAAAATAGATGCAGAGCCGAT 59.449 45.455 0.00 0.00 43.29 4.18
5305 7177 5.814764 AAGACAGCAAAATAGATGCAGAG 57.185 39.130 0.00 0.00 46.22 3.35
5306 7178 5.124457 GGAAAGACAGCAAAATAGATGCAGA 59.876 40.000 0.00 0.00 46.22 4.26
5309 7181 5.314923 TGGAAAGACAGCAAAATAGATGC 57.685 39.130 0.00 0.00 44.15 3.91
5323 7195 1.609072 GAGCAACTGGGTTGGAAAGAC 59.391 52.381 11.55 0.00 42.99 3.01
5338 7210 3.286353 TGAGTGGTGATGTTTTGAGCAA 58.714 40.909 0.00 0.00 0.00 3.91
5389 7261 5.048504 CCATTAGTGCCATTAGTGCCATTAG 60.049 44.000 0.00 0.00 0.00 1.73
5390 7262 4.826733 CCATTAGTGCCATTAGTGCCATTA 59.173 41.667 0.00 0.00 0.00 1.90
5391 7263 3.638160 CCATTAGTGCCATTAGTGCCATT 59.362 43.478 0.00 0.00 0.00 3.16
5392 7264 3.225104 CCATTAGTGCCATTAGTGCCAT 58.775 45.455 0.00 0.00 0.00 4.40
5393 7265 2.653726 CCATTAGTGCCATTAGTGCCA 58.346 47.619 0.00 0.00 0.00 4.92
5394 7266 1.338020 GCCATTAGTGCCATTAGTGCC 59.662 52.381 0.00 0.00 0.00 5.01
5395 7267 2.023673 TGCCATTAGTGCCATTAGTGC 58.976 47.619 0.00 0.00 0.00 4.40
5396 7268 3.282021 AGTGCCATTAGTGCCATTAGTG 58.718 45.455 0.00 0.00 0.00 2.74
5397 7269 3.652057 AGTGCCATTAGTGCCATTAGT 57.348 42.857 0.00 0.00 0.00 2.24
5398 7270 4.024893 CGTTAGTGCCATTAGTGCCATTAG 60.025 45.833 0.00 0.00 0.00 1.73
5399 7271 3.874543 CGTTAGTGCCATTAGTGCCATTA 59.125 43.478 0.00 0.00 0.00 1.90
5400 7272 2.682856 CGTTAGTGCCATTAGTGCCATT 59.317 45.455 0.00 0.00 0.00 3.16
5401 7273 2.288666 CGTTAGTGCCATTAGTGCCAT 58.711 47.619 0.00 0.00 0.00 4.40
5402 7274 1.677518 CCGTTAGTGCCATTAGTGCCA 60.678 52.381 0.00 0.00 0.00 4.92
5403 7275 1.014352 CCGTTAGTGCCATTAGTGCC 58.986 55.000 0.00 0.00 0.00 5.01
5404 7276 0.377203 GCCGTTAGTGCCATTAGTGC 59.623 55.000 0.00 0.00 0.00 4.40
5405 7277 1.732941 TGCCGTTAGTGCCATTAGTG 58.267 50.000 0.00 0.00 0.00 2.74
5406 7278 2.483014 TTGCCGTTAGTGCCATTAGT 57.517 45.000 0.00 0.00 0.00 2.24
5420 7292 1.066858 TCTTCCTCTGCTAGTTTGCCG 60.067 52.381 0.00 0.00 0.00 5.69
5521 7402 6.545666 TGGTTAAGAGAAAAACAGATGCAAGA 59.454 34.615 0.00 0.00 0.00 3.02
5522 7403 6.738114 TGGTTAAGAGAAAAACAGATGCAAG 58.262 36.000 0.00 0.00 0.00 4.01
5531 7412 4.796290 GCCTGCCTTGGTTAAGAGAAAAAC 60.796 45.833 0.00 0.00 35.92 2.43
5568 7449 1.131126 CAACGCCAATGATCAGACCAC 59.869 52.381 0.09 0.00 0.00 4.16
5569 7450 1.003003 TCAACGCCAATGATCAGACCA 59.997 47.619 0.09 0.00 0.00 4.02
5609 7491 7.392113 CCAACCACACCTACATAAAGTCATAAA 59.608 37.037 0.00 0.00 0.00 1.40
5610 7492 6.882140 CCAACCACACCTACATAAAGTCATAA 59.118 38.462 0.00 0.00 0.00 1.90
5611 7493 6.411376 CCAACCACACCTACATAAAGTCATA 58.589 40.000 0.00 0.00 0.00 2.15
5612 7494 5.253330 CCAACCACACCTACATAAAGTCAT 58.747 41.667 0.00 0.00 0.00 3.06
5771 7655 4.783242 CAACAACGGGACAAATCAGTAAG 58.217 43.478 0.00 0.00 0.00 2.34
5775 7659 1.608590 AGCAACAACGGGACAAATCAG 59.391 47.619 0.00 0.00 0.00 2.90
5823 7709 8.458052 AGGAAAAATCAAAACCATCAAAAACAC 58.542 29.630 0.00 0.00 0.00 3.32
5862 7748 4.007659 CGCCAGTTCTAGTTTAAACCCAT 58.992 43.478 14.72 0.00 0.00 4.00
5869 7755 1.275291 AGCAGCGCCAGTTCTAGTTTA 59.725 47.619 2.29 0.00 0.00 2.01
5900 7786 3.705043 ACGTACAAGGGCTATTACTCG 57.295 47.619 0.00 0.00 0.00 4.18
5906 7792 1.485066 CTCCCAACGTACAAGGGCTAT 59.515 52.381 8.94 0.00 42.52 2.97
5920 7806 6.043590 ACATTATCAGTGCATATCTCTCCCAA 59.956 38.462 0.00 0.00 0.00 4.12
5938 7824 9.559958 CAAATGAAACAACTAGGTCACATTATC 57.440 33.333 0.00 0.00 31.36 1.75
6018 7904 7.970061 CCACATAAACTTGACAATAACATGGAG 59.030 37.037 0.00 0.00 0.00 3.86
6020 7906 7.825681 TCCACATAAACTTGACAATAACATGG 58.174 34.615 0.00 0.00 0.00 3.66
6021 7907 9.859427 AATCCACATAAACTTGACAATAACATG 57.141 29.630 0.00 0.00 0.00 3.21
6028 7914 7.094805 GCTAGTCAATCCACATAAACTTGACAA 60.095 37.037 14.09 0.00 45.04 3.18
6030 7916 6.183360 GGCTAGTCAATCCACATAAACTTGAC 60.183 42.308 5.77 5.77 43.70 3.18
6032 7918 5.066505 GGGCTAGTCAATCCACATAAACTTG 59.933 44.000 0.00 0.00 0.00 3.16
6033 7919 5.044846 AGGGCTAGTCAATCCACATAAACTT 60.045 40.000 0.00 0.00 0.00 2.66
6034 7920 4.475016 AGGGCTAGTCAATCCACATAAACT 59.525 41.667 0.00 0.00 0.00 2.66
6035 7921 4.781934 AGGGCTAGTCAATCCACATAAAC 58.218 43.478 0.00 0.00 0.00 2.01
6037 7923 5.450818 AAAGGGCTAGTCAATCCACATAA 57.549 39.130 0.00 0.00 0.00 1.90
6038 7924 5.045213 TGAAAAGGGCTAGTCAATCCACATA 60.045 40.000 0.00 0.00 0.00 2.29
6039 7925 4.263905 TGAAAAGGGCTAGTCAATCCACAT 60.264 41.667 0.00 0.00 0.00 3.21
6041 7927 3.686016 TGAAAAGGGCTAGTCAATCCAC 58.314 45.455 0.00 0.00 0.00 4.02
6042 7928 4.272489 CATGAAAAGGGCTAGTCAATCCA 58.728 43.478 0.00 0.00 0.00 3.41
6043 7929 3.067320 GCATGAAAAGGGCTAGTCAATCC 59.933 47.826 0.00 0.00 0.00 3.01
6044 7930 3.950395 AGCATGAAAAGGGCTAGTCAATC 59.050 43.478 0.00 0.00 35.82 2.67
6045 7931 3.973425 AGCATGAAAAGGGCTAGTCAAT 58.027 40.909 0.00 0.00 35.82 2.57
6048 7934 2.424956 CCAAGCATGAAAAGGGCTAGTC 59.575 50.000 0.00 0.00 36.76 2.59
6049 7935 2.041620 TCCAAGCATGAAAAGGGCTAGT 59.958 45.455 0.00 0.00 36.76 2.57
6050 7936 2.424956 GTCCAAGCATGAAAAGGGCTAG 59.575 50.000 0.00 0.00 36.76 3.42
6051 7937 2.041620 AGTCCAAGCATGAAAAGGGCTA 59.958 45.455 0.00 0.00 36.76 3.93
6052 7938 1.203100 AGTCCAAGCATGAAAAGGGCT 60.203 47.619 0.00 0.00 40.14 5.19
6054 7940 4.060205 CAAAAGTCCAAGCATGAAAAGGG 58.940 43.478 0.00 0.00 0.00 3.95
6055 7941 4.060205 CCAAAAGTCCAAGCATGAAAAGG 58.940 43.478 0.00 0.00 0.00 3.11
6056 7942 4.696455 ACCAAAAGTCCAAGCATGAAAAG 58.304 39.130 0.00 0.00 0.00 2.27
6057 7943 4.751767 ACCAAAAGTCCAAGCATGAAAA 57.248 36.364 0.00 0.00 0.00 2.29
6059 7945 3.740764 GCAACCAAAAGTCCAAGCATGAA 60.741 43.478 0.00 0.00 0.00 2.57
6060 7946 2.224018 GCAACCAAAAGTCCAAGCATGA 60.224 45.455 0.00 0.00 0.00 3.07
6061 7947 2.137523 GCAACCAAAAGTCCAAGCATG 58.862 47.619 0.00 0.00 0.00 4.06
6063 7949 0.102120 CGCAACCAAAAGTCCAAGCA 59.898 50.000 0.00 0.00 0.00 3.91
6064 7950 0.102300 ACGCAACCAAAAGTCCAAGC 59.898 50.000 0.00 0.00 0.00 4.01
6065 7951 2.159310 TCAACGCAACCAAAAGTCCAAG 60.159 45.455 0.00 0.00 0.00 3.61
6066 7952 1.819288 TCAACGCAACCAAAAGTCCAA 59.181 42.857 0.00 0.00 0.00 3.53
6067 7953 1.133407 GTCAACGCAACCAAAAGTCCA 59.867 47.619 0.00 0.00 0.00 4.02
6068 7954 1.404035 AGTCAACGCAACCAAAAGTCC 59.596 47.619 0.00 0.00 0.00 3.85
6069 7955 2.844122 AGTCAACGCAACCAAAAGTC 57.156 45.000 0.00 0.00 0.00 3.01
6071 7957 2.032799 TGCTAGTCAACGCAACCAAAAG 59.967 45.455 0.00 0.00 32.40 2.27
6073 7959 1.669604 TGCTAGTCAACGCAACCAAA 58.330 45.000 0.00 0.00 32.40 3.28
6074 7960 1.535028 CATGCTAGTCAACGCAACCAA 59.465 47.619 0.00 0.00 39.89 3.67
6075 7961 1.155889 CATGCTAGTCAACGCAACCA 58.844 50.000 0.00 0.00 39.89 3.67
6076 7962 1.156736 ACATGCTAGTCAACGCAACC 58.843 50.000 0.00 0.00 39.89 3.77
6077 7963 2.969443 AACATGCTAGTCAACGCAAC 57.031 45.000 0.00 0.00 39.89 4.17
6079 7965 3.313012 ACTAACATGCTAGTCAACGCA 57.687 42.857 2.85 0.00 40.87 5.24
6080 7966 5.968387 AATACTAACATGCTAGTCAACGC 57.032 39.130 11.99 0.00 34.03 4.84
6141 9808 9.415544 GCATCTCCAATTTGGTTATATTTCATC 57.584 33.333 14.98 0.00 39.03 2.92
6143 9810 7.201992 GGGCATCTCCAATTTGGTTATATTTCA 60.202 37.037 14.98 0.00 39.03 2.69
6201 9868 1.972872 AGACAAGGCAGTTTGGTGAG 58.027 50.000 0.00 0.00 32.32 3.51
6233 9900 4.168101 AGACAGATAAAAGGGACTCCACA 58.832 43.478 0.00 0.00 38.49 4.17
6237 9904 5.657302 TCAGGTAGACAGATAAAAGGGACTC 59.343 44.000 0.00 0.00 38.49 3.36
6275 9942 0.534203 AGCAGGTTTCCGCGAGAAAA 60.534 50.000 19.61 9.92 45.93 2.29
6277 9944 1.374252 GAGCAGGTTTCCGCGAGAA 60.374 57.895 8.23 6.83 0.00 2.87
6278 9945 2.094757 TTGAGCAGGTTTCCGCGAGA 62.095 55.000 8.23 0.00 0.00 4.04
6279 9946 1.021390 ATTGAGCAGGTTTCCGCGAG 61.021 55.000 8.23 0.00 0.00 5.03
6280 9947 1.003839 ATTGAGCAGGTTTCCGCGA 60.004 52.632 8.23 0.00 0.00 5.87
6281 9948 1.135315 CATTGAGCAGGTTTCCGCG 59.865 57.895 0.00 0.00 0.00 6.46
6282 9949 1.244019 ACCATTGAGCAGGTTTCCGC 61.244 55.000 0.00 0.00 33.39 5.54
6283 9950 0.804989 GACCATTGAGCAGGTTTCCG 59.195 55.000 0.00 0.00 38.50 4.30
6284 9951 1.815003 CTGACCATTGAGCAGGTTTCC 59.185 52.381 0.00 0.00 38.50 3.13
6285 9952 2.508526 ACTGACCATTGAGCAGGTTTC 58.491 47.619 9.51 0.00 38.50 2.78
6286 9953 2.664402 ACTGACCATTGAGCAGGTTT 57.336 45.000 9.51 0.00 38.50 3.27
6287 9954 2.664402 AACTGACCATTGAGCAGGTT 57.336 45.000 9.51 0.00 38.50 3.50
6288 9955 2.664402 AAACTGACCATTGAGCAGGT 57.336 45.000 9.51 0.00 41.83 4.00
6289 9956 3.679389 AGTAAACTGACCATTGAGCAGG 58.321 45.455 9.51 0.00 34.05 4.85
6290 9957 3.369147 CGAGTAAACTGACCATTGAGCAG 59.631 47.826 0.00 0.00 35.81 4.24
6291 9958 3.006430 TCGAGTAAACTGACCATTGAGCA 59.994 43.478 0.00 0.00 0.00 4.26
6292 9959 3.585862 TCGAGTAAACTGACCATTGAGC 58.414 45.455 0.00 0.00 0.00 4.26
6297 9964 5.477291 TCTCTTTCTCGAGTAAACTGACCAT 59.523 40.000 13.13 0.00 32.83 3.55
6298 9965 4.825634 TCTCTTTCTCGAGTAAACTGACCA 59.174 41.667 13.13 0.00 32.83 4.02
6302 9969 7.087639 ACAGAATCTCTTTCTCGAGTAAACTG 58.912 38.462 13.13 14.07 42.98 3.16
6308 9975 5.007034 TCTGACAGAATCTCTTTCTCGAGT 58.993 41.667 13.13 0.00 42.98 4.18
6309 9976 5.331902 GTCTGACAGAATCTCTTTCTCGAG 58.668 45.833 6.76 5.93 42.98 4.04
6329 9996 5.770162 AGAAAAGGAAAATCAACGATGGTCT 59.230 36.000 0.00 0.00 0.00 3.85
6366 10036 3.134574 TGCGTACTGGTTTTCAAGGAT 57.865 42.857 0.00 0.00 0.00 3.24
6369 10039 3.311322 TGTCTTGCGTACTGGTTTTCAAG 59.689 43.478 0.00 0.00 34.04 3.02
6418 10088 1.974236 AGAGGTGTCAGTCCTTGGAAG 59.026 52.381 0.00 0.00 35.20 3.46
6424 10094 1.133009 AGGTGAAGAGGTGTCAGTCCT 60.133 52.381 0.00 0.00 38.09 3.85
6440 10110 8.030692 TCTTGAATTCATATTTTGAGCAAGGTG 58.969 33.333 9.40 0.00 38.71 4.00
6538 10209 2.228822 GGTGAAATGTGGCGAGATGTTT 59.771 45.455 0.00 0.00 0.00 2.83
6543 10214 0.036388 GAGGGTGAAATGTGGCGAGA 60.036 55.000 0.00 0.00 0.00 4.04
6557 10228 3.374402 CGACAGCAGACCGAGGGT 61.374 66.667 0.00 0.00 39.44 4.34
6562 10233 4.778415 CGGACCGACAGCAGACCG 62.778 72.222 8.64 0.00 34.77 4.79
6563 10234 3.628280 GACGGACCGACAGCAGACC 62.628 68.421 23.38 0.00 0.00 3.85
6564 10235 2.126424 GACGGACCGACAGCAGAC 60.126 66.667 23.38 0.00 0.00 3.51
6565 10236 3.371063 GGACGGACCGACAGCAGA 61.371 66.667 23.38 0.00 0.00 4.26
6585 10256 5.395682 TTTCATCTTCTTCATTTGGCCTG 57.604 39.130 3.32 0.00 0.00 4.85
6588 10259 6.417044 CGATCATTTCATCTTCTTCATTTGGC 59.583 38.462 0.00 0.00 0.00 4.52
6590 10261 7.642978 GGTCGATCATTTCATCTTCTTCATTTG 59.357 37.037 0.00 0.00 0.00 2.32
6606 10277 4.066490 TGTTTTGGTTACGGTCGATCATT 58.934 39.130 0.00 0.00 0.00 2.57
6607 10278 3.666274 TGTTTTGGTTACGGTCGATCAT 58.334 40.909 0.00 0.00 0.00 2.45
6608 10279 3.109044 TGTTTTGGTTACGGTCGATCA 57.891 42.857 0.00 0.00 0.00 2.92
6609 10280 4.471157 TTTGTTTTGGTTACGGTCGATC 57.529 40.909 0.00 0.00 0.00 3.69
6610 10281 4.515944 TGATTTGTTTTGGTTACGGTCGAT 59.484 37.500 0.00 0.00 0.00 3.59
6611 10282 3.875727 TGATTTGTTTTGGTTACGGTCGA 59.124 39.130 0.00 0.00 0.00 4.20
6612 10283 3.969981 GTGATTTGTTTTGGTTACGGTCG 59.030 43.478 0.00 0.00 0.00 4.79
6613 10284 3.969981 CGTGATTTGTTTTGGTTACGGTC 59.030 43.478 0.00 0.00 0.00 4.79
6614 10285 3.243134 CCGTGATTTGTTTTGGTTACGGT 60.243 43.478 0.00 0.00 43.34 4.83
6615 10286 3.301706 CCGTGATTTGTTTTGGTTACGG 58.698 45.455 0.00 0.00 42.89 4.02
6616 10287 4.212213 TCCGTGATTTGTTTTGGTTACG 57.788 40.909 0.00 0.00 0.00 3.18
6617 10288 5.341617 TGTTCCGTGATTTGTTTTGGTTAC 58.658 37.500 0.00 0.00 0.00 2.50
6618 10289 5.578005 TGTTCCGTGATTTGTTTTGGTTA 57.422 34.783 0.00 0.00 0.00 2.85
6619 10290 4.457834 TGTTCCGTGATTTGTTTTGGTT 57.542 36.364 0.00 0.00 0.00 3.67
6627 10298 4.169508 TGTTTGTGTTGTTCCGTGATTTG 58.830 39.130 0.00 0.00 0.00 2.32
6673 10344 9.426837 TCGCTAGTAGTATAATTGTTTGTTTGT 57.573 29.630 0.00 0.00 0.00 2.83
6680 10351 9.931210 GCAAATTTCGCTAGTAGTATAATTGTT 57.069 29.630 0.00 0.00 0.00 2.83
6681 10352 8.273557 CGCAAATTTCGCTAGTAGTATAATTGT 58.726 33.333 0.00 0.00 0.00 2.71
6682 10353 8.627756 CGCAAATTTCGCTAGTAGTATAATTG 57.372 34.615 0.00 0.32 0.00 2.32
6697 10368 3.230567 GCGGTCGCGCAAATTTCG 61.231 61.111 8.75 3.14 34.62 3.46
6708 10379 0.959553 ATCTATGTACCAGGCGGTCG 59.040 55.000 4.32 0.00 44.71 4.79
6713 10384 3.990469 CGTTGATGATCTATGTACCAGGC 59.010 47.826 0.00 0.00 0.00 4.85
6716 10387 6.911250 ATACCGTTGATGATCTATGTACCA 57.089 37.500 0.00 0.00 0.00 3.25


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.