Multiple sequence alignment - TraesCS7D01G130000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G130000 chr7D 100.000 3714 0 0 1 3714 82293049 82296762 0.000000e+00 6859.0
1 TraesCS7D01G130000 chr7D 100.000 2744 0 0 4089 6832 82297137 82299880 0.000000e+00 5068.0
2 TraesCS7D01G130000 chr7D 79.412 238 32 10 19 245 530843408 530843177 1.190000e-32 152.0
3 TraesCS7D01G130000 chr7D 88.034 117 9 5 5865 5980 386510877 386510989 4.300000e-27 134.0
4 TraesCS7D01G130000 chr7D 76.357 258 31 19 1 246 617054840 617055079 2.010000e-20 111.0
5 TraesCS7D01G130000 chr7D 89.706 68 5 2 19 85 519423880 519423946 1.220000e-12 86.1
6 TraesCS7D01G130000 chr7A 92.252 2917 143 36 626 3497 83931792 83934670 0.000000e+00 4058.0
7 TraesCS7D01G130000 chr7A 96.149 883 22 5 4089 4970 83935232 83936103 0.000000e+00 1432.0
8 TraesCS7D01G130000 chr7A 94.604 908 27 8 4971 5867 83936190 83937086 0.000000e+00 1386.0
9 TraesCS7D01G130000 chr7A 94.537 421 21 2 1 421 83911649 83912067 0.000000e+00 649.0
10 TraesCS7D01G130000 chr7A 92.683 287 13 3 6261 6540 83937713 83937998 2.290000e-109 407.0
11 TraesCS7D01G130000 chr7A 90.948 232 20 1 6601 6832 83938030 83938260 1.850000e-80 311.0
12 TraesCS7D01G130000 chr7A 87.931 58 6 1 6591 6648 55920865 55920921 4.420000e-07 67.6
13 TraesCS7D01G130000 chr7B 93.128 2765 113 36 774 3497 29587211 29589939 0.000000e+00 3982.0
14 TraesCS7D01G130000 chr7B 96.548 985 30 3 4091 5073 29590202 29591184 0.000000e+00 1628.0
15 TraesCS7D01G130000 chr7B 94.250 800 34 6 5073 5863 29591300 29592096 0.000000e+00 1212.0
16 TraesCS7D01G130000 chr7B 93.769 674 26 8 1 662 29586484 29587153 0.000000e+00 998.0
17 TraesCS7D01G130000 chr7B 94.301 193 10 1 6641 6832 29593098 29593290 1.860000e-75 294.0
18 TraesCS7D01G130000 chr7B 94.845 97 5 0 5856 5952 734366936 734366840 1.190000e-32 152.0
19 TraesCS7D01G130000 chr2A 93.865 163 8 2 3496 3657 578387555 578387716 1.900000e-60 244.0
20 TraesCS7D01G130000 chr2A 93.252 163 9 2 3496 3657 70985746 70985585 8.860000e-59 239.0
21 TraesCS7D01G130000 chr2A 94.845 97 3 2 5854 5949 79164491 79164396 4.270000e-32 150.0
22 TraesCS7D01G130000 chr2A 78.138 247 35 11 7 245 98880586 98880821 9.240000e-29 139.0
23 TraesCS7D01G130000 chr2A 89.623 106 10 1 3387 3492 335834658 335834554 4.300000e-27 134.0
24 TraesCS7D01G130000 chr2A 77.350 234 37 9 18 246 4214429 4214651 2.590000e-24 124.0
25 TraesCS7D01G130000 chr3D 92.814 167 8 4 3492 3657 87925997 87926160 8.860000e-59 239.0
26 TraesCS7D01G130000 chr3D 93.043 115 3 5 5862 5975 349636633 349636743 5.480000e-36 163.0
27 TraesCS7D01G130000 chr3D 92.157 51 4 0 6590 6640 167036993 167037043 9.500000e-09 73.1
28 TraesCS7D01G130000 chr1B 92.771 166 10 2 3493 3657 533863228 533863064 8.860000e-59 239.0
29 TraesCS7D01G130000 chr1B 95.789 95 3 1 5860 5954 634510165 634510072 1.190000e-32 152.0
30 TraesCS7D01G130000 chr1B 78.125 160 27 7 72 227 403537317 403537162 2.030000e-15 95.3
31 TraesCS7D01G130000 chr1B 92.157 51 4 0 6590 6640 611950404 611950454 9.500000e-09 73.1
32 TraesCS7D01G130000 chr1B 92.157 51 1 2 3655 3702 546850363 546850413 1.230000e-07 69.4
33 TraesCS7D01G130000 chr1B 92.157 51 1 2 3655 3702 546957368 546957418 1.230000e-07 69.4
34 TraesCS7D01G130000 chr4B 92.216 167 11 2 3492 3657 178081098 178081263 1.150000e-57 235.0
35 TraesCS7D01G130000 chr4B 80.342 234 35 9 21 247 440584149 440583920 4.240000e-37 167.0
36 TraesCS7D01G130000 chr5B 92.216 167 9 3 3492 3657 473640827 473640664 4.120000e-57 233.0
37 TraesCS7D01G130000 chr5B 77.340 203 34 6 19 214 108799009 108798812 7.240000e-20 110.0
38 TraesCS7D01G130000 chr5B 94.231 52 3 0 6590 6641 55186259 55186310 5.680000e-11 80.5
39 TraesCS7D01G130000 chr5B 87.931 58 5 1 6590 6647 285934822 285934877 4.420000e-07 67.6
40 TraesCS7D01G130000 chr2B 92.216 167 10 3 3492 3657 578597700 578597864 4.120000e-57 233.0
41 TraesCS7D01G130000 chr2B 83.815 173 21 3 6 172 541011822 541011993 2.550000e-34 158.0
42 TraesCS7D01G130000 chr1A 92.216 167 10 3 3492 3657 71070760 71070596 4.120000e-57 233.0
43 TraesCS7D01G130000 chr1A 78.298 235 43 5 19 246 583366742 583366509 1.990000e-30 145.0
44 TraesCS7D01G130000 chr1A 86.111 108 14 1 3387 3494 412744877 412744983 1.560000e-21 115.0
45 TraesCS7D01G130000 chr1A 91.071 56 3 2 6590 6644 169646427 169646373 2.640000e-09 75.0
46 TraesCS7D01G130000 chr4D 90.857 175 10 5 3495 3667 12520139 12520309 5.330000e-56 230.0
47 TraesCS7D01G130000 chr4D 79.149 235 39 8 19 246 291531788 291532019 3.300000e-33 154.0
48 TraesCS7D01G130000 chr4D 93.878 98 6 0 5853 5950 22573416 22573319 1.540000e-31 148.0
49 TraesCS7D01G130000 chr1D 80.426 235 39 6 16 245 9262672 9262904 9.110000e-39 172.0
50 TraesCS7D01G130000 chr1D 79.237 236 41 7 16 245 9020314 9020547 2.550000e-34 158.0
51 TraesCS7D01G130000 chr1D 91.837 49 1 2 3655 3700 8853185 8853233 1.590000e-06 65.8
52 TraesCS7D01G130000 chr1D 91.837 49 1 2 3655 3700 254402205 254402253 1.590000e-06 65.8
53 TraesCS7D01G130000 chr6B 95.960 99 2 2 5857 5954 546656665 546656568 7.090000e-35 159.0
54 TraesCS7D01G130000 chr6B 89.189 111 10 2 3387 3497 450078011 450077903 3.320000e-28 137.0
55 TraesCS7D01G130000 chr6D 96.809 94 2 1 5857 5949 437348317 437348224 9.170000e-34 156.0
56 TraesCS7D01G130000 chr6D 90.741 54 4 1 6591 6643 423213833 423213886 3.420000e-08 71.3
57 TraesCS7D01G130000 chr6D 91.837 49 1 2 3655 3700 45515472 45515424 1.590000e-06 65.8
58 TraesCS7D01G130000 chr5D 95.833 96 4 0 5863 5958 383306975 383306880 9.170000e-34 156.0
59 TraesCS7D01G130000 chr5D 91.837 49 1 2 3655 3700 6184843 6184795 1.590000e-06 65.8
60 TraesCS7D01G130000 chr4A 90.351 114 8 3 5843 5954 616405417 616405305 5.520000e-31 147.0
61 TraesCS7D01G130000 chr4A 90.698 43 3 1 19 60 605733940 605733898 1.000000e-03 56.5
62 TraesCS7D01G130000 chr6A 89.815 108 10 1 3387 3494 215594865 215594971 3.320000e-28 137.0
63 TraesCS7D01G130000 chr2D 79.798 198 30 8 18 207 5770420 5770225 1.200000e-27 135.0
64 TraesCS7D01G130000 chrUn 88.182 110 12 1 3388 3497 261573121 261573013 5.560000e-26 130.0
65 TraesCS7D01G130000 chrUn 91.837 49 1 2 3655 3700 261573013 261572965 1.590000e-06 65.8
66 TraesCS7D01G130000 chrUn 91.837 49 1 2 3655 3700 458726945 458726993 1.590000e-06 65.8
67 TraesCS7D01G130000 chrUn 100.000 29 0 0 108 136 281647601 281647573 3.000000e-03 54.7
68 TraesCS7D01G130000 chr3A 76.613 248 51 6 1 245 130967324 130967567 5.560000e-26 130.0
69 TraesCS7D01G130000 chr5A 85.227 88 10 3 159 244 28226801 28226887 3.390000e-13 87.9
70 TraesCS7D01G130000 chr5A 75.000 228 33 12 28 246 69125893 69126105 4.390000e-12 84.2
71 TraesCS7D01G130000 chr5A 88.333 60 6 1 1 60 28226719 28226777 3.420000e-08 71.3
72 TraesCS7D01G130000 chr5A 88.333 60 5 2 6590 6648 687692539 687692597 3.420000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G130000 chr7D 82293049 82299880 6831 False 5963.5 6859 100.0000 1 6832 2 chr7D.!!$F4 6831
1 TraesCS7D01G130000 chr7A 83931792 83938260 6468 False 1518.8 4058 93.3272 626 6832 5 chr7A.!!$F3 6206
2 TraesCS7D01G130000 chr7B 29586484 29593290 6806 False 1622.8 3982 94.3992 1 6832 5 chr7B.!!$F1 6831

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
943 983 1.000394 AGGCGCCGCATAAAACTTTTT 60.000 42.857 23.20 0.00 0.00 1.94 F
1461 1504 0.910338 AGTCTGCACAGATCAGGCAT 59.090 50.000 3.24 0.00 38.56 4.40 F
1859 1904 1.401018 GCTCCGGTTATGTGTTTGTGC 60.401 52.381 0.00 0.00 0.00 4.57 F
2317 2373 1.551329 GGGTTGGATGGCCACCTTTAA 60.551 52.381 8.16 0.00 45.94 1.52 F
3558 3646 2.154567 AAGGGACTACATACGGAGCA 57.845 50.000 0.00 0.00 38.49 4.26 F
3709 3797 0.039437 CTTGGATACGATCGGGTCCG 60.039 60.000 25.93 14.96 42.51 4.79 F
5503 5932 0.179081 GGTGGGGTCGATAGTTCTGC 60.179 60.000 0.00 0.00 37.40 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2241 2297 0.376852 CAATTACCATCACCGCCACG 59.623 55.000 0.00 0.00 0.00 4.94 R
2367 2423 1.000731 GCTTTGGTGCCAACATTGCTA 59.999 47.619 2.72 0.00 35.46 3.49 R
3689 3777 0.319641 GGACCCGATCGTATCCAAGC 60.320 60.000 23.25 3.09 0.00 4.01 R
3693 3781 2.257676 GCGGACCCGATCGTATCC 59.742 66.667 19.92 19.92 42.83 2.59 R
5459 5888 0.832135 TGGACAGGAAGGCGAGAACT 60.832 55.000 0.00 0.00 0.00 3.01 R
5637 6073 0.759436 CTACCATACGCCCCCTGACT 60.759 60.000 0.00 0.00 0.00 3.41 R
6335 7489 0.821711 TTGGCCCAGAAACAGAACGG 60.822 55.000 0.00 0.00 0.00 4.44 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
60 62 9.356929 CAAAAGTGTTATTTTCGAAAGCATTTC 57.643 29.630 10.98 2.92 39.69 2.17
92 94 1.028905 TTTTTGCCACGACTTCCAGG 58.971 50.000 0.00 0.00 0.00 4.45
103 105 2.806244 CGACTTCCAGGAACGTGATTTT 59.194 45.455 0.00 0.00 0.00 1.82
128 130 7.966246 ATGATCAAATTTTGCAAGCACTTAA 57.034 28.000 0.00 0.00 0.00 1.85
154 156 7.992180 ACATTTTTCAAAGTTCATCACAGAC 57.008 32.000 0.00 0.00 0.00 3.51
164 166 7.756395 AAGTTCATCACAGACAAATTCAGAT 57.244 32.000 0.00 0.00 0.00 2.90
246 248 2.341257 GCGAGCAGAAGATGACTTTCA 58.659 47.619 0.00 0.00 36.39 2.69
288 290 2.233922 TCCTCTCGACAAAATCACCTCC 59.766 50.000 0.00 0.00 0.00 4.30
295 297 4.224147 TCGACAAAATCACCTCCCTCAATA 59.776 41.667 0.00 0.00 0.00 1.90
359 361 6.070424 TCCGTTGTTAACCTCAATTCCTCTAT 60.070 38.462 2.48 0.00 0.00 1.98
366 368 5.822132 ACCTCAATTCCTCTATCCATCAG 57.178 43.478 0.00 0.00 0.00 2.90
373 375 8.807118 TCAATTCCTCTATCCATCAGTGTATAC 58.193 37.037 0.00 0.00 0.00 1.47
472 474 3.923017 AAAGAATGGTTTCGAGGCAAG 57.077 42.857 0.00 0.00 36.93 4.01
473 475 2.568623 AGAATGGTTTCGAGGCAAGT 57.431 45.000 0.00 0.00 36.93 3.16
476 478 3.004734 AGAATGGTTTCGAGGCAAGTTTG 59.995 43.478 0.00 0.00 36.93 2.93
479 481 2.494073 TGGTTTCGAGGCAAGTTTGTTT 59.506 40.909 0.00 0.00 0.00 2.83
480 482 3.056465 TGGTTTCGAGGCAAGTTTGTTTT 60.056 39.130 0.00 0.00 0.00 2.43
481 483 3.930229 GGTTTCGAGGCAAGTTTGTTTTT 59.070 39.130 0.00 0.00 0.00 1.94
530 532 1.145803 GGTACGAAGTGGAAGTGCAC 58.854 55.000 9.40 9.40 45.73 4.57
589 598 9.892130 AAAAGGATAGTTGAATTCTAGTACAGG 57.108 33.333 7.05 0.00 0.00 4.00
619 628 5.902681 TCATACTGTATCTTTGTCGAAGGG 58.097 41.667 0.00 0.00 35.98 3.95
781 790 2.889678 AGACTTTACGGTCGGAAACTCT 59.110 45.455 0.00 1.24 40.76 3.24
792 801 4.318618 GGTCGGAAACTCTTTTTCTTCGAC 60.319 45.833 14.74 14.74 0.00 4.20
895 934 2.096980 GGAACCGCCGAAAATAAGAAGG 59.903 50.000 0.00 0.00 0.00 3.46
943 983 1.000394 AGGCGCCGCATAAAACTTTTT 60.000 42.857 23.20 0.00 0.00 1.94
1013 1053 4.033776 CCCTTCCGCAAGCTCCCA 62.034 66.667 0.00 0.00 0.00 4.37
1264 1306 1.595382 GCGTGGACTGTGTGAGCTT 60.595 57.895 0.00 0.00 0.00 3.74
1318 1361 1.201343 GTCGTCGCTTAGGATTGAGC 58.799 55.000 0.00 0.00 35.58 4.26
1442 1485 1.246056 CGTCCCGTGTAGGTCCTCAA 61.246 60.000 0.00 0.00 38.74 3.02
1450 1493 1.618837 TGTAGGTCCTCAAGTCTGCAC 59.381 52.381 0.00 0.00 0.00 4.57
1461 1504 0.910338 AGTCTGCACAGATCAGGCAT 59.090 50.000 3.24 0.00 38.56 4.40
1536 1579 7.308435 GGATCCAACTTTTAGTGTTCATTGAG 58.692 38.462 6.95 0.00 0.00 3.02
1561 1604 7.778470 GGACTTATCCACTTTGATTAGACAG 57.222 40.000 0.00 0.00 45.47 3.51
1596 1639 8.818057 GTCGTATACATGAAATTAAGCAGAAGT 58.182 33.333 0.00 0.00 0.00 3.01
1671 1714 9.686683 ATAGTTGCATAGATAGGTTTGTTTCTT 57.313 29.630 0.00 0.00 0.00 2.52
1721 1765 6.258068 GGACCTTACTCACACAATAATGTAGC 59.742 42.308 0.00 0.00 37.82 3.58
1722 1766 6.707290 ACCTTACTCACACAATAATGTAGCA 58.293 36.000 0.00 0.00 37.82 3.49
1724 1768 6.238211 CCTTACTCACACAATAATGTAGCAGC 60.238 42.308 0.00 0.00 37.82 5.25
1725 1769 4.578871 ACTCACACAATAATGTAGCAGCA 58.421 39.130 0.00 0.00 37.82 4.41
1827 1872 4.081309 AGCCGAAACTTATTAGCTGTACCA 60.081 41.667 0.00 0.00 0.00 3.25
1844 1889 4.634004 TGTACCAAATGTTAGAATGCTCCG 59.366 41.667 0.00 0.00 0.00 4.63
1859 1904 1.401018 GCTCCGGTTATGTGTTTGTGC 60.401 52.381 0.00 0.00 0.00 4.57
2058 2113 4.259530 GCAAATGACTCGTAATTGCAATGC 60.260 41.667 13.82 8.37 44.29 3.56
2071 2126 7.999878 CGTAATTGCAATGCTATTTATTTGCTG 59.000 33.333 18.72 0.00 35.81 4.41
2256 2312 3.387091 AGCGTGGCGGTGATGGTA 61.387 61.111 0.00 0.00 35.85 3.25
2269 2325 6.071952 GGCGGTGATGGTAATTGAATAATGAT 60.072 38.462 0.00 0.00 0.00 2.45
2317 2373 1.551329 GGGTTGGATGGCCACCTTTAA 60.551 52.381 8.16 0.00 45.94 1.52
2367 2423 3.181428 CCCTTTCTTTCCCTGTCCTTTCT 60.181 47.826 0.00 0.00 0.00 2.52
2409 2465 2.189499 GGCTGATCGGGGTCAATGC 61.189 63.158 3.14 0.00 0.00 3.56
2473 2529 2.439507 AGGCAAGATGTACATAGGTGGG 59.560 50.000 8.71 0.00 0.00 4.61
2477 2533 4.141711 GCAAGATGTACATAGGTGGGAGAA 60.142 45.833 8.71 0.00 0.00 2.87
2500 2556 2.520549 ACTTGATAGAGGGGAGGCTAGT 59.479 50.000 0.00 0.00 0.00 2.57
2572 2628 4.142790 CAGAAGGATTGAATGATCAGGGG 58.857 47.826 0.09 0.00 36.78 4.79
2590 2646 4.898861 CAGGGGGAGAGCTAGGATATATTC 59.101 50.000 0.00 0.00 0.00 1.75
2613 2694 2.422939 ATAGCAGCTAATGAGGGGGA 57.577 50.000 6.13 0.00 0.00 4.81
2627 2708 3.181437 TGAGGGGGAAAGAAACTTACCAC 60.181 47.826 0.00 0.00 32.05 4.16
2803 2884 7.857456 TGCCCTTACATCTTAGTCTTTATTCA 58.143 34.615 0.00 0.00 0.00 2.57
2923 3004 2.818751 TGACCTCAAAACACCCAAGT 57.181 45.000 0.00 0.00 0.00 3.16
2941 3022 5.765182 CCCAAGTGTTTCTTACTCTGATGTT 59.235 40.000 0.00 0.00 34.66 2.71
3193 3274 5.412594 TGTGCTCATGACTTTTACATTCCTC 59.587 40.000 0.00 0.00 0.00 3.71
3292 3373 6.290605 TGCTGCTTATGATGCTTTATCTACA 58.709 36.000 0.00 0.00 36.71 2.74
3497 3585 7.870588 AAAGCTATCCGAATTCGAATAGTAC 57.129 36.000 27.85 16.36 43.02 2.73
3498 3586 6.821031 AGCTATCCGAATTCGAATAGTACT 57.179 37.500 27.85 17.96 43.02 2.73
3499 3587 6.844254 AGCTATCCGAATTCGAATAGTACTC 58.156 40.000 27.85 15.49 43.02 2.59
3500 3588 6.028987 GCTATCCGAATTCGAATAGTACTCC 58.971 44.000 27.85 12.56 43.02 3.85
3501 3589 4.843220 TCCGAATTCGAATAGTACTCCC 57.157 45.455 28.76 0.00 43.02 4.30
3502 3590 4.467769 TCCGAATTCGAATAGTACTCCCT 58.532 43.478 28.76 0.00 43.02 4.20
3503 3591 4.891756 TCCGAATTCGAATAGTACTCCCTT 59.108 41.667 28.76 0.00 43.02 3.95
3504 3592 5.009410 TCCGAATTCGAATAGTACTCCCTTC 59.991 44.000 28.76 1.00 43.02 3.46
3505 3593 4.910456 CGAATTCGAATAGTACTCCCTTCG 59.090 45.833 23.29 20.56 43.02 3.79
3506 3594 5.505324 CGAATTCGAATAGTACTCCCTTCGT 60.505 44.000 23.29 12.34 43.02 3.85
3507 3595 5.848833 ATTCGAATAGTACTCCCTTCGTT 57.151 39.130 23.30 15.05 40.84 3.85
3508 3596 4.889832 TCGAATAGTACTCCCTTCGTTC 57.110 45.455 23.30 9.46 40.84 3.95
3509 3597 3.629398 TCGAATAGTACTCCCTTCGTTCC 59.371 47.826 23.30 0.00 40.84 3.62
3510 3598 3.631227 CGAATAGTACTCCCTTCGTTCCT 59.369 47.826 19.26 0.00 36.61 3.36
3511 3599 4.818546 CGAATAGTACTCCCTTCGTTCCTA 59.181 45.833 19.26 0.00 36.61 2.94
3512 3600 5.297776 CGAATAGTACTCCCTTCGTTCCTAA 59.702 44.000 19.26 0.00 36.61 2.69
3513 3601 6.183360 CGAATAGTACTCCCTTCGTTCCTAAA 60.183 42.308 19.26 0.00 36.61 1.85
3514 3602 7.469732 CGAATAGTACTCCCTTCGTTCCTAAAT 60.470 40.741 19.26 0.00 36.61 1.40
3515 3603 8.773033 AATAGTACTCCCTTCGTTCCTAAATA 57.227 34.615 0.00 0.00 0.00 1.40
3516 3604 8.953223 ATAGTACTCCCTTCGTTCCTAAATAT 57.047 34.615 0.00 0.00 0.00 1.28
3518 3606 8.773033 AGTACTCCCTTCGTTCCTAAATATAA 57.227 34.615 0.00 0.00 0.00 0.98
3519 3607 8.858094 AGTACTCCCTTCGTTCCTAAATATAAG 58.142 37.037 0.00 0.00 0.00 1.73
3520 3608 7.672122 ACTCCCTTCGTTCCTAAATATAAGT 57.328 36.000 0.00 0.00 0.00 2.24
3521 3609 7.724287 ACTCCCTTCGTTCCTAAATATAAGTC 58.276 38.462 0.00 0.00 0.00 3.01
3522 3610 7.564292 ACTCCCTTCGTTCCTAAATATAAGTCT 59.436 37.037 0.00 0.00 0.00 3.24
3523 3611 8.315220 TCCCTTCGTTCCTAAATATAAGTCTT 57.685 34.615 0.00 0.00 0.00 3.01
3524 3612 8.765517 TCCCTTCGTTCCTAAATATAAGTCTTT 58.234 33.333 0.00 0.00 0.00 2.52
3525 3613 9.392259 CCCTTCGTTCCTAAATATAAGTCTTTT 57.608 33.333 0.00 0.00 0.00 2.27
3543 3631 9.467796 AAGTCTTTTTAGAGATTCCAATAAGGG 57.532 33.333 0.00 0.00 38.24 3.95
3544 3632 8.836735 AGTCTTTTTAGAGATTCCAATAAGGGA 58.163 33.333 0.00 0.00 38.24 4.20
3545 3633 8.894731 GTCTTTTTAGAGATTCCAATAAGGGAC 58.105 37.037 0.00 0.00 36.46 4.46
3548 3636 9.901172 TTTTTAGAGATTCCAATAAGGGACTAC 57.099 33.333 0.00 0.00 38.49 2.73
3549 3637 8.618240 TTTAGAGATTCCAATAAGGGACTACA 57.382 34.615 0.00 0.00 38.49 2.74
3550 3638 8.798975 TTAGAGATTCCAATAAGGGACTACAT 57.201 34.615 0.00 0.00 38.49 2.29
3551 3639 9.892444 TTAGAGATTCCAATAAGGGACTACATA 57.108 33.333 0.00 0.00 38.49 2.29
3552 3640 8.196378 AGAGATTCCAATAAGGGACTACATAC 57.804 38.462 0.00 0.00 38.49 2.39
3553 3641 6.994221 AGATTCCAATAAGGGACTACATACG 58.006 40.000 0.00 0.00 38.49 3.06
3554 3642 5.540400 TTCCAATAAGGGACTACATACGG 57.460 43.478 0.00 0.00 38.49 4.02
3555 3643 4.806892 TCCAATAAGGGACTACATACGGA 58.193 43.478 0.00 0.00 38.49 4.69
3556 3644 4.831155 TCCAATAAGGGACTACATACGGAG 59.169 45.833 0.00 0.00 38.49 4.63
3557 3645 4.557205 CAATAAGGGACTACATACGGAGC 58.443 47.826 0.00 0.00 38.49 4.70
3558 3646 2.154567 AAGGGACTACATACGGAGCA 57.845 50.000 0.00 0.00 38.49 4.26
3559 3647 2.154567 AGGGACTACATACGGAGCAA 57.845 50.000 0.00 0.00 36.02 3.91
3560 3648 2.463752 AGGGACTACATACGGAGCAAA 58.536 47.619 0.00 0.00 36.02 3.68
3561 3649 3.039011 AGGGACTACATACGGAGCAAAT 58.961 45.455 0.00 0.00 36.02 2.32
3562 3650 3.131396 GGGACTACATACGGAGCAAATG 58.869 50.000 0.00 0.00 0.00 2.32
3563 3651 3.181469 GGGACTACATACGGAGCAAATGA 60.181 47.826 0.00 0.00 0.00 2.57
3564 3652 4.051922 GGACTACATACGGAGCAAATGAG 58.948 47.826 0.00 0.00 0.00 2.90
3565 3653 4.441634 GGACTACATACGGAGCAAATGAGT 60.442 45.833 0.00 0.00 0.00 3.41
3566 3654 4.433615 ACTACATACGGAGCAAATGAGTG 58.566 43.478 0.00 0.00 0.00 3.51
3567 3655 3.610040 ACATACGGAGCAAATGAGTGA 57.390 42.857 0.00 0.00 0.00 3.41
3568 3656 3.937814 ACATACGGAGCAAATGAGTGAA 58.062 40.909 0.00 0.00 0.00 3.18
3569 3657 4.517285 ACATACGGAGCAAATGAGTGAAT 58.483 39.130 0.00 0.00 0.00 2.57
3570 3658 4.572389 ACATACGGAGCAAATGAGTGAATC 59.428 41.667 0.00 0.00 0.00 2.52
3571 3659 3.340814 ACGGAGCAAATGAGTGAATCT 57.659 42.857 0.00 0.00 0.00 2.40
3572 3660 4.471904 ACGGAGCAAATGAGTGAATCTA 57.528 40.909 0.00 0.00 0.00 1.98
3573 3661 4.184629 ACGGAGCAAATGAGTGAATCTAC 58.815 43.478 0.00 0.00 0.00 2.59
3574 3662 4.183865 CGGAGCAAATGAGTGAATCTACA 58.816 43.478 0.00 0.00 0.00 2.74
3575 3663 4.033358 CGGAGCAAATGAGTGAATCTACAC 59.967 45.833 0.00 0.00 40.60 2.90
3619 3707 8.780846 ACATCCGTATGTAGTTTGTATTGAAA 57.219 30.769 0.00 0.00 44.66 2.69
3620 3708 9.391006 ACATCCGTATGTAGTTTGTATTGAAAT 57.609 29.630 0.00 0.00 44.66 2.17
3653 3741 9.907229 AAAAGACTTATATTTAGGAACAGAGGG 57.093 33.333 0.00 0.00 0.00 4.30
3654 3742 8.855804 AAGACTTATATTTAGGAACAGAGGGA 57.144 34.615 0.00 0.00 0.00 4.20
3669 3757 4.180057 CAGAGGGAGTTGAGAAAGAATCG 58.820 47.826 0.00 0.00 0.00 3.34
3694 3782 7.000575 CAATAAATGCAAAGATGAAGCTTGG 57.999 36.000 2.10 0.00 0.00 3.61
3703 3791 3.906998 AGATGAAGCTTGGATACGATCG 58.093 45.455 14.88 14.88 42.51 3.69
3709 3797 0.039437 CTTGGATACGATCGGGTCCG 60.039 60.000 25.93 14.96 42.51 4.79
4171 4393 2.527100 CCGAACCACTAGACGATTGAC 58.473 52.381 0.00 0.00 0.00 3.18
4559 4782 8.172484 TGCGTTAACTAGCTGTAAAATACATTG 58.828 33.333 3.71 0.00 38.15 2.82
4575 4798 2.892852 ACATTGTCCAACCCATGACTTG 59.107 45.455 0.00 0.00 0.00 3.16
4581 4804 1.270550 CCAACCCATGACTTGAGTTGC 59.729 52.381 9.42 0.00 37.17 4.17
4656 4879 6.536731 CGAAGCTATTTGCAGAACTATGAT 57.463 37.500 0.00 0.00 45.94 2.45
4819 5042 7.981789 TGCATTTCTCTGTTATAGTACTTCAGG 59.018 37.037 0.00 1.23 0.00 3.86
5005 5314 2.038952 AGCTTCCATTGCTGTGTAGTGA 59.961 45.455 0.00 0.00 39.56 3.41
5103 5529 2.802816 GTTATACATTGCTCAGCCCTCG 59.197 50.000 0.00 0.00 0.00 4.63
5244 5670 7.494625 TGAAACGGAGATAAATGAGATGGTAAC 59.505 37.037 0.00 0.00 0.00 2.50
5333 5759 4.556699 GCACTTTTGAAGCATTTACCGTCT 60.557 41.667 0.00 0.00 0.00 4.18
5366 5792 7.275920 TCTTATGAACCTGATCTTTTCTAGGC 58.724 38.462 0.00 0.00 33.57 3.93
5429 5858 4.425520 AGAAGAAATCTAGGCGAAGAACG 58.574 43.478 0.00 0.00 40.02 3.95
5459 5888 2.268920 GCGGCCCAACTCATCTCA 59.731 61.111 0.00 0.00 0.00 3.27
5482 5911 0.460987 CTCGCCTTCCTGTCCATCAC 60.461 60.000 0.00 0.00 0.00 3.06
5503 5932 0.179081 GGTGGGGTCGATAGTTCTGC 60.179 60.000 0.00 0.00 37.40 4.26
5528 5957 7.270757 GCTAGACGATGACTATGATATGGAT 57.729 40.000 0.00 0.00 0.00 3.41
5562 5991 5.917545 AAACCCTCCCTTTCTTACACTAA 57.082 39.130 0.00 0.00 0.00 2.24
5666 6105 1.547223 GCGTATGGTAGCTAGGAGGGA 60.547 57.143 0.00 0.00 0.00 4.20
5667 6106 2.872732 CGTATGGTAGCTAGGAGGGAA 58.127 52.381 0.00 0.00 0.00 3.97
5874 6315 8.726870 TTCTTTTTAAATATGTACTCCCTCCG 57.273 34.615 0.00 0.00 0.00 4.63
5875 6316 7.854337 TCTTTTTAAATATGTACTCCCTCCGT 58.146 34.615 0.00 0.00 0.00 4.69
5876 6317 8.980596 TCTTTTTAAATATGTACTCCCTCCGTA 58.019 33.333 0.00 0.00 0.00 4.02
5877 6318 9.603921 CTTTTTAAATATGTACTCCCTCCGTAA 57.396 33.333 0.00 0.00 0.00 3.18
5878 6319 9.956640 TTTTTAAATATGTACTCCCTCCGTAAA 57.043 29.630 0.00 0.00 0.00 2.01
5879 6320 8.947055 TTTAAATATGTACTCCCTCCGTAAAC 57.053 34.615 0.00 0.00 0.00 2.01
5880 6321 6.803366 AAATATGTACTCCCTCCGTAAACT 57.197 37.500 0.00 0.00 0.00 2.66
5881 6322 7.902920 AAATATGTACTCCCTCCGTAAACTA 57.097 36.000 0.00 0.00 0.00 2.24
5882 6323 7.902920 AATATGTACTCCCTCCGTAAACTAA 57.097 36.000 0.00 0.00 0.00 2.24
5883 6324 8.488308 AATATGTACTCCCTCCGTAAACTAAT 57.512 34.615 0.00 0.00 0.00 1.73
5884 6325 9.592196 AATATGTACTCCCTCCGTAAACTAATA 57.408 33.333 0.00 0.00 0.00 0.98
5885 6326 9.765295 ATATGTACTCCCTCCGTAAACTAATAT 57.235 33.333 0.00 0.00 0.00 1.28
5887 6328 8.995027 TGTACTCCCTCCGTAAACTAATATAA 57.005 34.615 0.00 0.00 0.00 0.98
5888 6329 9.071276 TGTACTCCCTCCGTAAACTAATATAAG 57.929 37.037 0.00 0.00 0.00 1.73
5889 6330 9.289782 GTACTCCCTCCGTAAACTAATATAAGA 57.710 37.037 0.00 0.00 0.00 2.10
5890 6331 8.406730 ACTCCCTCCGTAAACTAATATAAGAG 57.593 38.462 0.00 0.00 0.00 2.85
5891 6332 7.039853 ACTCCCTCCGTAAACTAATATAAGAGC 60.040 40.741 0.00 0.00 0.00 4.09
5892 6333 6.779049 TCCCTCCGTAAACTAATATAAGAGCA 59.221 38.462 0.00 0.00 0.00 4.26
5893 6334 7.453752 TCCCTCCGTAAACTAATATAAGAGCAT 59.546 37.037 0.00 0.00 0.00 3.79
5894 6335 8.095169 CCCTCCGTAAACTAATATAAGAGCATT 58.905 37.037 0.00 0.00 0.00 3.56
5895 6336 9.490379 CCTCCGTAAACTAATATAAGAGCATTT 57.510 33.333 0.00 0.00 0.00 2.32
5923 6364 9.733219 GATTACTACTTTAGTGATCTAAACGCT 57.267 33.333 9.68 0.00 44.10 5.07
5924 6365 9.733219 ATTACTACTTTAGTGATCTAAACGCTC 57.267 33.333 0.00 0.00 40.05 5.03
5925 6366 7.393841 ACTACTTTAGTGATCTAAACGCTCT 57.606 36.000 0.00 0.00 40.05 4.09
5926 6367 7.828712 ACTACTTTAGTGATCTAAACGCTCTT 58.171 34.615 0.00 0.00 40.05 2.85
5927 6368 8.954350 ACTACTTTAGTGATCTAAACGCTCTTA 58.046 33.333 0.00 0.00 40.05 2.10
5928 6369 9.953697 CTACTTTAGTGATCTAAACGCTCTTAT 57.046 33.333 0.00 0.00 40.05 1.73
5945 6386 9.750783 ACGCTCTTATATTAGTTTATAGAGGGA 57.249 33.333 16.73 0.00 37.30 4.20
5959 6400 5.700402 ATAGAGGGAGTACAATTGTTGCT 57.300 39.130 17.78 14.97 0.00 3.91
5978 6419 6.257630 TGTTGCTGGTAAGAAAAGAAAATTGC 59.742 34.615 0.00 0.00 0.00 3.56
6002 6443 2.743179 CCGCCCCCTCTAGGTTTCC 61.743 68.421 0.00 0.00 0.00 3.13
6034 6575 4.899502 ACGATGACATGATATTTCCCTCC 58.100 43.478 0.00 0.00 0.00 4.30
6035 6576 4.256920 CGATGACATGATATTTCCCTCCC 58.743 47.826 0.00 0.00 0.00 4.30
6043 6584 5.031066 TGATATTTCCCTCCCGTGTTAAG 57.969 43.478 0.00 0.00 0.00 1.85
6048 6589 1.076677 TCCCTCCCGTGTTAAGAGAGT 59.923 52.381 0.00 0.00 0.00 3.24
6060 6601 2.617840 AAGAGAGTAGGAAACCCGGA 57.382 50.000 0.73 0.00 0.00 5.14
6080 6621 0.841961 TGGGGCATTCTGGATCAGAG 59.158 55.000 0.00 0.00 41.75 3.35
6085 6626 2.485903 GCATTCTGGATCAGAGCAGAG 58.514 52.381 0.00 0.00 41.75 3.35
6120 6661 3.135712 TCGGCATCTAAATAAGGCTGGAA 59.864 43.478 0.00 0.00 0.00 3.53
6150 6692 9.316730 GGATTATGTGTCAACATTTTAATGCAT 57.683 29.630 0.00 0.00 44.94 3.96
6174 6716 3.334583 AAACGGTGTAGCACATCAGAT 57.665 42.857 1.61 0.00 35.86 2.90
6192 6734 4.119136 CAGATTTTCTTTGGCAAAACCGT 58.881 39.130 14.43 0.00 43.94 4.83
6206 6748 4.671766 GCAAAACCGTGAGCAATTACCTAG 60.672 45.833 0.00 0.00 0.00 3.02
6207 6749 3.975168 AACCGTGAGCAATTACCTAGT 57.025 42.857 0.00 0.00 0.00 2.57
6208 6750 5.410355 AAACCGTGAGCAATTACCTAGTA 57.590 39.130 0.00 0.00 0.00 1.82
6209 6751 5.609533 AACCGTGAGCAATTACCTAGTAT 57.390 39.130 0.00 0.00 0.00 2.12
6235 6788 5.897377 ATTTTACTTCAGGTGGTGCATAC 57.103 39.130 0.00 0.00 0.00 2.39
6261 6814 3.501950 GCAAAATCGTCTTTGATGGGTC 58.498 45.455 13.68 0.00 38.35 4.46
6290 7393 6.357579 TGTGGAAATTGTTTGCCTCATAAT 57.642 33.333 0.00 0.00 0.00 1.28
6296 7399 8.664798 GGAAATTGTTTGCCTCATAATTTAACC 58.335 33.333 0.00 0.00 32.79 2.85
6331 7485 2.530460 TTATGGTGGCCTCTGCATTT 57.470 45.000 3.32 0.00 40.13 2.32
6335 7489 0.743097 GGTGGCCTCTGCATTTGATC 59.257 55.000 3.32 0.00 40.13 2.92
6368 7522 1.408969 GGCCAAACCCTGAACTGAAA 58.591 50.000 0.00 0.00 0.00 2.69
6418 7572 1.933005 CGTTCGTGCCCGTTGTTTA 59.067 52.632 0.00 0.00 35.01 2.01
6420 7574 1.069771 CGTTCGTGCCCGTTGTTTAAT 60.070 47.619 0.00 0.00 35.01 1.40
6508 7677 6.684686 TGGATAAGACGGTCCTTTTATATCG 58.315 40.000 4.14 0.00 35.49 2.92
6531 7700 9.730420 ATCGTGGTTATTAAAGCAACAATAATC 57.270 29.630 0.00 0.00 44.23 1.75
6557 7726 9.651913 CAGCTTATTTTCTATTCTCTCTATCCC 57.348 37.037 0.00 0.00 0.00 3.85
6558 7727 9.386122 AGCTTATTTTCTATTCTCTCTATCCCA 57.614 33.333 0.00 0.00 0.00 4.37
6561 7730 9.982651 TTATTTTCTATTCTCTCTATCCCAACG 57.017 33.333 0.00 0.00 0.00 4.10
6562 7731 7.655521 TTTTCTATTCTCTCTATCCCAACGA 57.344 36.000 0.00 0.00 0.00 3.85
6563 7732 6.636562 TTCTATTCTCTCTATCCCAACGAC 57.363 41.667 0.00 0.00 0.00 4.34
6564 7733 5.691896 TCTATTCTCTCTATCCCAACGACA 58.308 41.667 0.00 0.00 0.00 4.35
6566 7735 3.367646 TCTCTCTATCCCAACGACACT 57.632 47.619 0.00 0.00 0.00 3.55
6567 7736 4.498894 TCTCTCTATCCCAACGACACTA 57.501 45.455 0.00 0.00 0.00 2.74
6569 7738 4.080469 TCTCTCTATCCCAACGACACTAGT 60.080 45.833 0.00 0.00 0.00 2.57
6570 7739 5.129980 TCTCTCTATCCCAACGACACTAGTA 59.870 44.000 0.00 0.00 0.00 1.82
6571 7740 5.121811 TCTCTATCCCAACGACACTAGTAC 58.878 45.833 0.00 0.00 0.00 2.73
6572 7741 4.847198 TCTATCCCAACGACACTAGTACA 58.153 43.478 0.00 0.00 0.00 2.90
6573 7742 4.880120 TCTATCCCAACGACACTAGTACAG 59.120 45.833 0.00 0.00 0.00 2.74
6574 7743 2.867624 TCCCAACGACACTAGTACAGT 58.132 47.619 0.00 0.00 38.32 3.55
6575 7744 4.019792 TCCCAACGACACTAGTACAGTA 57.980 45.455 0.00 0.00 34.98 2.74
6576 7745 4.005650 TCCCAACGACACTAGTACAGTAG 58.994 47.826 0.00 0.00 34.98 2.57
6577 7746 3.128242 CCCAACGACACTAGTACAGTAGG 59.872 52.174 0.00 0.00 34.98 3.18
6578 7747 3.755378 CCAACGACACTAGTACAGTAGGT 59.245 47.826 0.00 0.00 34.98 3.08
6579 7748 4.217118 CCAACGACACTAGTACAGTAGGTT 59.783 45.833 0.00 0.00 34.98 3.50
6580 7749 5.278660 CCAACGACACTAGTACAGTAGGTTT 60.279 44.000 0.00 0.00 34.98 3.27
6581 7750 6.072508 CCAACGACACTAGTACAGTAGGTTTA 60.073 42.308 0.00 0.00 34.98 2.01
6582 7751 7.362662 CAACGACACTAGTACAGTAGGTTTAA 58.637 38.462 0.00 0.00 34.98 1.52
6583 7752 7.510549 ACGACACTAGTACAGTAGGTTTAAA 57.489 36.000 0.00 0.00 34.98 1.52
6584 7753 7.940850 ACGACACTAGTACAGTAGGTTTAAAA 58.059 34.615 0.00 0.00 34.98 1.52
6585 7754 8.413229 ACGACACTAGTACAGTAGGTTTAAAAA 58.587 33.333 0.00 0.00 34.98 1.94
6626 7795 9.477484 AGTGTTAAAGACGCTCTTATATTATGG 57.523 33.333 1.53 0.00 45.79 2.74
6630 7799 5.312120 AGACGCTCTTATATTATGGGACG 57.688 43.478 0.00 0.00 0.00 4.79
6631 7800 4.158025 AGACGCTCTTATATTATGGGACGG 59.842 45.833 0.00 0.00 0.00 4.79
6634 7803 4.398358 CGCTCTTATATTATGGGACGGAGA 59.602 45.833 0.00 0.00 0.00 3.71
6635 7804 5.449314 CGCTCTTATATTATGGGACGGAGAG 60.449 48.000 0.00 0.00 33.16 3.20
6681 7850 2.903855 CCACATCCGCCTGCATCC 60.904 66.667 0.00 0.00 0.00 3.51
6708 7877 5.642491 ACATTAGAAGCTTCCGGTAAAGAAC 59.358 40.000 22.81 0.00 0.00 3.01
6711 7880 0.036671 AGCTTCCGGTAAAGAACCCG 60.037 55.000 7.07 0.00 46.62 5.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 7.229707 TCGAAAATAACACTTTTGGAGGATCAA 59.770 33.333 0.00 0.00 36.25 2.57
83 85 5.642063 TCATAAAATCACGTTCCTGGAAGTC 59.358 40.000 9.92 0.00 0.00 3.01
92 94 9.464248 GCAAAATTTGATCATAAAATCACGTTC 57.536 29.630 10.26 0.00 35.44 3.95
103 105 9.486497 TTTAAGTGCTTGCAAAATTTGATCATA 57.514 25.926 10.26 0.00 0.00 2.15
128 130 8.872845 GTCTGTGATGAACTTTGAAAAATGTTT 58.127 29.630 0.00 0.00 0.00 2.83
192 194 2.351726 GCTCGCGATGGACAGTAAAATT 59.648 45.455 10.36 0.00 0.00 1.82
203 205 0.580578 CTCATTTGAGCTCGCGATGG 59.419 55.000 10.36 0.00 35.13 3.51
246 248 4.268359 GAGGAGATTGTCAATCCTGCTTT 58.732 43.478 19.80 2.55 43.57 3.51
288 290 1.656652 CACGGGAAGCAGTATTGAGG 58.343 55.000 0.00 0.00 0.00 3.86
295 297 0.250338 GTCTTTCCACGGGAAGCAGT 60.250 55.000 0.00 0.00 43.06 4.40
359 361 8.862325 AAGTTGAAAATGTATACACTGATGGA 57.138 30.769 7.96 0.00 0.00 3.41
479 481 8.425577 TCAAAACTTCTCAACAACAACAAAAA 57.574 26.923 0.00 0.00 0.00 1.94
480 482 7.170658 CCTCAAAACTTCTCAACAACAACAAAA 59.829 33.333 0.00 0.00 0.00 2.44
481 483 6.644592 CCTCAAAACTTCTCAACAACAACAAA 59.355 34.615 0.00 0.00 0.00 2.83
589 598 6.418226 CGACAAAGATACAGTATGAGCCTTAC 59.582 42.308 0.00 0.00 39.69 2.34
619 628 7.148086 TGGCATACAGATCATCAAAAGGTAAAC 60.148 37.037 0.00 0.00 0.00 2.01
677 686 9.554395 TTCATATTTTGTTCTTTTCTTTTCCCC 57.446 29.630 0.00 0.00 0.00 4.81
731 740 7.065803 CAGACAGAAACTTTCTTTTACCACTCA 59.934 37.037 0.92 0.00 38.11 3.41
732 741 7.065923 ACAGACAGAAACTTTCTTTTACCACTC 59.934 37.037 0.92 0.00 38.11 3.51
781 790 2.096174 CCACCGTGTTGTCGAAGAAAAA 59.904 45.455 0.00 0.00 34.38 1.94
792 801 0.179029 AGGACTTTCCCACCGTGTTG 60.179 55.000 0.00 0.00 37.19 3.33
884 923 2.369394 CGCCTGCTCCCTTCTTATTTT 58.631 47.619 0.00 0.00 0.00 1.82
895 934 4.537433 CCTACTGCCGCCTGCTCC 62.537 72.222 0.00 0.00 42.00 4.70
943 983 1.419381 GGCTTGGGGAAACAGGAAAA 58.581 50.000 0.00 0.00 0.00 2.29
1318 1361 3.438087 CCTAGCACAGTCAACAATTCAGG 59.562 47.826 0.00 0.00 0.00 3.86
1442 1485 0.910338 ATGCCTGATCTGTGCAGACT 59.090 50.000 16.51 0.00 40.75 3.24
1461 1504 2.190313 GCATCCCACGGATCAGCA 59.810 61.111 0.00 0.00 40.98 4.41
1536 1579 6.650120 TGTCTAATCAAAGTGGATAAGTCCC 58.350 40.000 0.00 0.00 44.41 4.46
1596 1639 2.920724 TCATCGTGTTCAGAAACCCA 57.079 45.000 0.00 0.00 34.28 4.51
1605 1648 5.743872 AGACTTTTGCTTTTTCATCGTGTTC 59.256 36.000 0.00 0.00 0.00 3.18
1663 1706 9.444600 GGATTACCTACAGTTCATAAGAAACAA 57.555 33.333 0.00 0.00 35.08 2.83
1708 1752 7.225341 TCAGTTATCTGCTGCTACATTATTGTG 59.775 37.037 0.00 0.00 41.10 3.33
1709 1753 7.275183 TCAGTTATCTGCTGCTACATTATTGT 58.725 34.615 0.00 0.00 41.10 2.71
1721 1765 5.503683 GCTTAGCACATTCAGTTATCTGCTG 60.504 44.000 0.00 0.00 41.10 4.41
1722 1766 4.574013 GCTTAGCACATTCAGTTATCTGCT 59.426 41.667 0.00 0.00 41.10 4.24
1724 1768 5.583854 ACTGCTTAGCACATTCAGTTATCTG 59.416 40.000 1.39 0.00 37.44 2.90
1725 1769 5.583854 CACTGCTTAGCACATTCAGTTATCT 59.416 40.000 1.39 0.00 36.01 1.98
1782 1827 4.891992 TGAAGCTACAAAACTAGAGCCT 57.108 40.909 0.00 0.00 35.45 4.58
1784 1829 4.142795 GGCTTGAAGCTACAAAACTAGAGC 60.143 45.833 17.59 0.00 41.99 4.09
1827 1872 5.885912 ACATAACCGGAGCATTCTAACATTT 59.114 36.000 9.46 0.00 0.00 2.32
1844 1889 3.726291 AGGTTGCACAAACACATAACC 57.274 42.857 0.61 0.00 40.86 2.85
1876 1921 7.011482 GCATGGATTTTCGAAAGATGTACTACT 59.989 37.037 10.98 0.00 41.60 2.57
2185 2241 5.661056 TGTCATCACCTCTAACCTAGTTG 57.339 43.478 0.00 0.00 0.00 3.16
2241 2297 0.376852 CAATTACCATCACCGCCACG 59.623 55.000 0.00 0.00 0.00 4.94
2256 2312 9.288576 TCGCTTCCAATCTATCATTATTCAATT 57.711 29.630 0.00 0.00 0.00 2.32
2269 2325 3.461061 CTGCTGATTCGCTTCCAATCTA 58.539 45.455 0.00 0.00 32.32 1.98
2317 2373 1.956477 GTGAGGCAACACAAATGGAGT 59.044 47.619 9.34 0.00 39.50 3.85
2367 2423 1.000731 GCTTTGGTGCCAACATTGCTA 59.999 47.619 2.72 0.00 35.46 3.49
2397 2453 2.363172 TGGATCGCATTGACCCCGA 61.363 57.895 0.00 0.00 35.29 5.14
2409 2465 2.268920 CCTGGTGGGTGTGGATCG 59.731 66.667 0.00 0.00 0.00 3.69
2473 2529 4.684757 GCCTCCCCTCTATCAAGTTTTCTC 60.685 50.000 0.00 0.00 0.00 2.87
2477 2533 2.852130 AGCCTCCCCTCTATCAAGTTT 58.148 47.619 0.00 0.00 0.00 2.66
2572 2628 9.010029 GCTATAGTGAATATATCCTAGCTCTCC 57.990 40.741 0.84 0.00 0.00 3.71
2590 2646 3.055530 CCCCCTCATTAGCTGCTATAGTG 60.056 52.174 10.64 9.98 0.00 2.74
2613 2694 1.133730 TGGCCCGTGGTAAGTTTCTTT 60.134 47.619 0.00 0.00 0.00 2.52
2803 2884 8.985315 ATTCAACATATGGTATGTGATCTGTT 57.015 30.769 7.80 0.00 31.80 3.16
2923 3004 8.035394 GTGGATAGAACATCAGAGTAAGAAACA 58.965 37.037 0.00 0.00 0.00 2.83
2941 3022 4.524802 AATCATGGCCTTTGTGGATAGA 57.475 40.909 3.32 0.00 38.35 1.98
3193 3274 3.896648 ACTAGTGCGTGACCAAAAATG 57.103 42.857 0.00 0.00 0.00 2.32
3457 3545 9.046296 CGGATAGCTTTACTCTTTCAATGTAAT 57.954 33.333 0.00 0.00 0.00 1.89
3497 3585 7.953752 AGACTTATATTTAGGAACGAAGGGAG 58.046 38.462 0.00 0.00 0.00 4.30
3498 3586 7.909485 AGACTTATATTTAGGAACGAAGGGA 57.091 36.000 0.00 0.00 0.00 4.20
3499 3587 8.959705 AAAGACTTATATTTAGGAACGAAGGG 57.040 34.615 0.00 0.00 0.00 3.95
3517 3605 9.467796 CCCTTATTGGAATCTCTAAAAAGACTT 57.532 33.333 0.00 0.00 38.35 3.01
3518 3606 8.836735 TCCCTTATTGGAATCTCTAAAAAGACT 58.163 33.333 0.00 0.00 38.35 3.24
3519 3607 8.894731 GTCCCTTATTGGAATCTCTAAAAAGAC 58.105 37.037 0.00 0.00 35.80 3.01
3520 3608 8.836735 AGTCCCTTATTGGAATCTCTAAAAAGA 58.163 33.333 0.00 0.00 35.80 2.52
3522 3610 9.901172 GTAGTCCCTTATTGGAATCTCTAAAAA 57.099 33.333 0.00 0.00 35.80 1.94
3523 3611 9.053472 TGTAGTCCCTTATTGGAATCTCTAAAA 57.947 33.333 0.00 0.00 35.80 1.52
3524 3612 8.618240 TGTAGTCCCTTATTGGAATCTCTAAA 57.382 34.615 0.00 0.00 35.80 1.85
3525 3613 8.798975 ATGTAGTCCCTTATTGGAATCTCTAA 57.201 34.615 0.00 0.00 35.80 2.10
3526 3614 9.310449 GTATGTAGTCCCTTATTGGAATCTCTA 57.690 37.037 0.00 0.00 35.80 2.43
3527 3615 7.039644 CGTATGTAGTCCCTTATTGGAATCTCT 60.040 40.741 0.00 0.00 35.80 3.10
3528 3616 7.091443 CGTATGTAGTCCCTTATTGGAATCTC 58.909 42.308 0.00 0.00 35.80 2.75
3529 3617 6.014499 CCGTATGTAGTCCCTTATTGGAATCT 60.014 42.308 0.00 0.00 35.80 2.40
3530 3618 6.014840 TCCGTATGTAGTCCCTTATTGGAATC 60.015 42.308 0.00 0.00 35.80 2.52
3531 3619 5.842328 TCCGTATGTAGTCCCTTATTGGAAT 59.158 40.000 0.00 0.00 35.80 3.01
3532 3620 5.210430 TCCGTATGTAGTCCCTTATTGGAA 58.790 41.667 0.00 0.00 35.80 3.53
3533 3621 4.806892 TCCGTATGTAGTCCCTTATTGGA 58.193 43.478 0.00 0.00 38.35 3.53
3534 3622 4.560919 GCTCCGTATGTAGTCCCTTATTGG 60.561 50.000 0.00 0.00 0.00 3.16
3535 3623 4.038763 TGCTCCGTATGTAGTCCCTTATTG 59.961 45.833 0.00 0.00 0.00 1.90
3536 3624 4.220724 TGCTCCGTATGTAGTCCCTTATT 58.779 43.478 0.00 0.00 0.00 1.40
3537 3625 3.840991 TGCTCCGTATGTAGTCCCTTAT 58.159 45.455 0.00 0.00 0.00 1.73
3538 3626 3.301794 TGCTCCGTATGTAGTCCCTTA 57.698 47.619 0.00 0.00 0.00 2.69
3539 3627 2.154567 TGCTCCGTATGTAGTCCCTT 57.845 50.000 0.00 0.00 0.00 3.95
3540 3628 2.154567 TTGCTCCGTATGTAGTCCCT 57.845 50.000 0.00 0.00 0.00 4.20
3541 3629 2.973694 TTTGCTCCGTATGTAGTCCC 57.026 50.000 0.00 0.00 0.00 4.46
3542 3630 4.051922 CTCATTTGCTCCGTATGTAGTCC 58.948 47.826 0.00 0.00 0.00 3.85
3543 3631 4.504461 CACTCATTTGCTCCGTATGTAGTC 59.496 45.833 0.00 0.00 0.00 2.59
3544 3632 4.159693 TCACTCATTTGCTCCGTATGTAGT 59.840 41.667 0.00 0.00 0.00 2.73
3545 3633 4.682787 TCACTCATTTGCTCCGTATGTAG 58.317 43.478 0.00 0.00 0.00 2.74
3546 3634 4.729227 TCACTCATTTGCTCCGTATGTA 57.271 40.909 0.00 0.00 0.00 2.29
3547 3635 3.610040 TCACTCATTTGCTCCGTATGT 57.390 42.857 0.00 0.00 0.00 2.29
3548 3636 4.813161 AGATTCACTCATTTGCTCCGTATG 59.187 41.667 0.00 0.00 0.00 2.39
3549 3637 5.028549 AGATTCACTCATTTGCTCCGTAT 57.971 39.130 0.00 0.00 0.00 3.06
3550 3638 4.471904 AGATTCACTCATTTGCTCCGTA 57.528 40.909 0.00 0.00 0.00 4.02
3551 3639 3.340814 AGATTCACTCATTTGCTCCGT 57.659 42.857 0.00 0.00 0.00 4.69
3552 3640 4.033358 GTGTAGATTCACTCATTTGCTCCG 59.967 45.833 0.00 0.00 35.68 4.63
3553 3641 5.181748 AGTGTAGATTCACTCATTTGCTCC 58.818 41.667 0.00 0.00 44.07 4.70
3554 3642 6.734104 AAGTGTAGATTCACTCATTTGCTC 57.266 37.500 0.00 0.00 46.25 4.26
3555 3643 8.621532 TTAAAGTGTAGATTCACTCATTTGCT 57.378 30.769 0.00 0.00 46.25 3.91
3556 3644 9.677567 TTTTAAAGTGTAGATTCACTCATTTGC 57.322 29.630 0.00 0.00 46.25 3.68
3593 3681 9.872721 TTTCAATACAAACTACATACGGATGTA 57.127 29.630 19.32 19.32 44.77 2.29
3627 3715 9.907229 CCCTCTGTTCCTAAATATAAGTCTTTT 57.093 33.333 0.00 0.00 0.00 2.27
3628 3716 9.280456 TCCCTCTGTTCCTAAATATAAGTCTTT 57.720 33.333 0.00 0.00 0.00 2.52
3629 3717 8.855804 TCCCTCTGTTCCTAAATATAAGTCTT 57.144 34.615 0.00 0.00 0.00 3.01
3630 3718 8.068733 ACTCCCTCTGTTCCTAAATATAAGTCT 58.931 37.037 0.00 0.00 0.00 3.24
3631 3719 8.252624 ACTCCCTCTGTTCCTAAATATAAGTC 57.747 38.462 0.00 0.00 0.00 3.01
3632 3720 8.487028 CAACTCCCTCTGTTCCTAAATATAAGT 58.513 37.037 0.00 0.00 0.00 2.24
3633 3721 8.705594 TCAACTCCCTCTGTTCCTAAATATAAG 58.294 37.037 0.00 0.00 0.00 1.73
3634 3722 8.618240 TCAACTCCCTCTGTTCCTAAATATAA 57.382 34.615 0.00 0.00 0.00 0.98
3635 3723 8.065627 TCTCAACTCCCTCTGTTCCTAAATATA 58.934 37.037 0.00 0.00 0.00 0.86
3636 3724 6.903534 TCTCAACTCCCTCTGTTCCTAAATAT 59.096 38.462 0.00 0.00 0.00 1.28
3637 3725 6.261435 TCTCAACTCCCTCTGTTCCTAAATA 58.739 40.000 0.00 0.00 0.00 1.40
3638 3726 5.094387 TCTCAACTCCCTCTGTTCCTAAAT 58.906 41.667 0.00 0.00 0.00 1.40
3639 3727 4.489737 TCTCAACTCCCTCTGTTCCTAAA 58.510 43.478 0.00 0.00 0.00 1.85
3640 3728 4.127918 TCTCAACTCCCTCTGTTCCTAA 57.872 45.455 0.00 0.00 0.00 2.69
3641 3729 3.827817 TCTCAACTCCCTCTGTTCCTA 57.172 47.619 0.00 0.00 0.00 2.94
3642 3730 2.704190 TCTCAACTCCCTCTGTTCCT 57.296 50.000 0.00 0.00 0.00 3.36
3643 3731 3.325135 TCTTTCTCAACTCCCTCTGTTCC 59.675 47.826 0.00 0.00 0.00 3.62
3644 3732 4.608948 TCTTTCTCAACTCCCTCTGTTC 57.391 45.455 0.00 0.00 0.00 3.18
3645 3733 5.555966 GATTCTTTCTCAACTCCCTCTGTT 58.444 41.667 0.00 0.00 0.00 3.16
3646 3734 4.322349 CGATTCTTTCTCAACTCCCTCTGT 60.322 45.833 0.00 0.00 0.00 3.41
3647 3735 4.180057 CGATTCTTTCTCAACTCCCTCTG 58.820 47.826 0.00 0.00 0.00 3.35
3648 3736 3.368948 GCGATTCTTTCTCAACTCCCTCT 60.369 47.826 0.00 0.00 0.00 3.69
3649 3737 2.933260 GCGATTCTTTCTCAACTCCCTC 59.067 50.000 0.00 0.00 0.00 4.30
3650 3738 2.303022 TGCGATTCTTTCTCAACTCCCT 59.697 45.455 0.00 0.00 0.00 4.20
3651 3739 2.699954 TGCGATTCTTTCTCAACTCCC 58.300 47.619 0.00 0.00 0.00 4.30
3652 3740 4.954092 ATTGCGATTCTTTCTCAACTCC 57.046 40.909 0.00 0.00 32.17 3.85
3653 3741 7.044445 GCATTTATTGCGATTCTTTCTCAACTC 60.044 37.037 0.00 0.00 42.54 3.01
3654 3742 6.749118 GCATTTATTGCGATTCTTTCTCAACT 59.251 34.615 0.00 0.00 42.54 3.16
3682 3770 3.305676 CCGATCGTATCCAAGCTTCATCT 60.306 47.826 15.09 0.00 0.00 2.90
3683 3771 2.989840 CCGATCGTATCCAAGCTTCATC 59.010 50.000 15.09 0.00 0.00 2.92
3684 3772 2.289072 CCCGATCGTATCCAAGCTTCAT 60.289 50.000 15.09 0.00 0.00 2.57
3685 3773 1.068588 CCCGATCGTATCCAAGCTTCA 59.931 52.381 15.09 0.00 0.00 3.02
3686 3774 1.068741 ACCCGATCGTATCCAAGCTTC 59.931 52.381 15.09 0.00 0.00 3.86
3689 3777 0.319641 GGACCCGATCGTATCCAAGC 60.320 60.000 23.25 3.09 0.00 4.01
3693 3781 2.257676 GCGGACCCGATCGTATCC 59.742 66.667 19.92 19.92 42.83 2.59
3694 3782 2.257676 GGCGGACCCGATCGTATC 59.742 66.667 15.09 10.64 42.83 2.24
4171 4393 5.143376 AGAGCCACAAAGAATCAAAATGG 57.857 39.130 0.00 0.00 0.00 3.16
4447 4669 2.304761 GACTCATGGTTCCAGGGTTACA 59.695 50.000 3.70 0.00 0.00 2.41
4559 4782 2.568623 ACTCAAGTCATGGGTTGGAC 57.431 50.000 7.77 0.00 41.01 4.02
4575 4798 4.272748 AGGAAGTTAGTCAAAACGCAACTC 59.727 41.667 0.00 0.00 35.67 3.01
4581 4804 2.875933 TGCCAGGAAGTTAGTCAAAACG 59.124 45.455 0.00 0.00 34.46 3.60
4656 4879 4.467082 TCCTCGGCATACTTTACCAAGTTA 59.533 41.667 0.00 0.00 40.66 2.24
4819 5042 5.848406 ACTAGTAGAGATGCACTTTATGGC 58.152 41.667 3.59 0.00 0.00 4.40
5005 5314 7.112779 CCTGTTAACACTATCTCCTTTGGAAT 58.887 38.462 3.59 0.00 0.00 3.01
5184 5610 3.073274 AGGCCAAAGTCTCCAATACAC 57.927 47.619 5.01 0.00 0.00 2.90
5188 5614 3.806949 TGTTAGGCCAAAGTCTCCAAT 57.193 42.857 5.01 0.00 0.00 3.16
5244 5670 4.870123 TTTGGTTGGATTTGTCTCCATG 57.130 40.909 0.00 0.00 44.66 3.66
5366 5792 1.068541 GCTTTGGGTTTCGGCTTGTAG 60.069 52.381 0.00 0.00 0.00 2.74
5459 5888 0.832135 TGGACAGGAAGGCGAGAACT 60.832 55.000 0.00 0.00 0.00 3.01
5482 5911 1.041447 AGAACTATCGACCCCACCCG 61.041 60.000 0.00 0.00 0.00 5.28
5503 5932 5.294552 TCCATATCATAGTCATCGTCTAGCG 59.705 44.000 0.83 0.83 43.01 4.26
5528 5957 8.398743 AGAAAGGGAGGGTTTTAATCTTCATAA 58.601 33.333 0.00 0.00 0.00 1.90
5637 6073 0.759436 CTACCATACGCCCCCTGACT 60.759 60.000 0.00 0.00 0.00 3.41
5666 6105 5.048991 CCGCTAACCAACTCAGTGTATTTTT 60.049 40.000 0.00 0.00 0.00 1.94
5667 6106 4.454504 CCGCTAACCAACTCAGTGTATTTT 59.545 41.667 0.00 0.00 0.00 1.82
5863 6304 9.289782 TCTTATATTAGTTTACGGAGGGAGTAC 57.710 37.037 0.00 0.00 0.00 2.73
5864 6305 9.512588 CTCTTATATTAGTTTACGGAGGGAGTA 57.487 37.037 0.00 0.00 0.00 2.59
5865 6306 7.039853 GCTCTTATATTAGTTTACGGAGGGAGT 60.040 40.741 0.00 0.00 0.00 3.85
5866 6307 7.039923 TGCTCTTATATTAGTTTACGGAGGGAG 60.040 40.741 0.00 0.00 0.00 4.30
5867 6308 6.779049 TGCTCTTATATTAGTTTACGGAGGGA 59.221 38.462 0.00 0.00 0.00 4.20
5868 6309 6.989659 TGCTCTTATATTAGTTTACGGAGGG 58.010 40.000 0.00 0.00 0.00 4.30
5869 6310 9.490379 AAATGCTCTTATATTAGTTTACGGAGG 57.510 33.333 0.00 0.00 0.00 4.30
5896 6337 9.733219 GCGTTTAGATCACTAAAGTAGTAATCT 57.267 33.333 6.37 6.37 44.17 2.40
5897 6338 9.733219 AGCGTTTAGATCACTAAAGTAGTAATC 57.267 33.333 0.00 0.00 45.42 1.75
5898 6339 9.733219 GAGCGTTTAGATCACTAAAGTAGTAAT 57.267 33.333 0.00 0.00 45.42 1.89
5899 6340 8.954350 AGAGCGTTTAGATCACTAAAGTAGTAA 58.046 33.333 0.00 0.00 45.42 2.24
5900 6341 8.503458 AGAGCGTTTAGATCACTAAAGTAGTA 57.497 34.615 0.00 0.00 45.42 1.82
5901 6342 7.393841 AGAGCGTTTAGATCACTAAAGTAGT 57.606 36.000 0.00 0.00 45.42 2.73
5902 6343 9.953697 ATAAGAGCGTTTAGATCACTAAAGTAG 57.046 33.333 0.00 0.00 45.42 2.57
5919 6360 9.750783 TCCCTCTATAAACTAATATAAGAGCGT 57.249 33.333 0.00 0.00 0.00 5.07
5932 6373 7.553044 GCAACAATTGTACTCCCTCTATAAACT 59.447 37.037 12.39 0.00 0.00 2.66
5933 6374 7.553044 AGCAACAATTGTACTCCCTCTATAAAC 59.447 37.037 12.39 0.00 0.00 2.01
5934 6375 7.552687 CAGCAACAATTGTACTCCCTCTATAAA 59.447 37.037 12.39 0.00 0.00 1.40
5935 6376 7.047891 CAGCAACAATTGTACTCCCTCTATAA 58.952 38.462 12.39 0.00 0.00 0.98
5936 6377 6.408092 CCAGCAACAATTGTACTCCCTCTATA 60.408 42.308 12.39 0.00 0.00 1.31
5937 6378 5.431765 CAGCAACAATTGTACTCCCTCTAT 58.568 41.667 12.39 0.00 0.00 1.98
5938 6379 4.323485 CCAGCAACAATTGTACTCCCTCTA 60.323 45.833 12.39 0.00 0.00 2.43
5939 6380 3.560025 CCAGCAACAATTGTACTCCCTCT 60.560 47.826 12.39 0.00 0.00 3.69
5940 6381 2.749621 CCAGCAACAATTGTACTCCCTC 59.250 50.000 12.39 0.00 0.00 4.30
5941 6382 2.108250 ACCAGCAACAATTGTACTCCCT 59.892 45.455 12.39 1.37 0.00 4.20
5942 6383 2.514803 ACCAGCAACAATTGTACTCCC 58.485 47.619 12.39 0.00 0.00 4.30
5943 6384 5.001232 TCTTACCAGCAACAATTGTACTCC 58.999 41.667 12.39 0.76 0.00 3.85
5944 6385 6.554334 TTCTTACCAGCAACAATTGTACTC 57.446 37.500 12.39 4.12 0.00 2.59
5945 6386 6.952773 TTTCTTACCAGCAACAATTGTACT 57.047 33.333 12.39 9.80 0.00 2.73
5959 6400 7.201688 GGCAAAAGCAATTTTCTTTTCTTACCA 60.202 33.333 10.61 0.00 40.57 3.25
5978 6419 1.452108 CTAGAGGGGGCGGCAAAAG 60.452 63.158 12.47 0.00 0.00 2.27
6002 6443 9.645059 AAATATCATGTCATCGTTACTGGATAG 57.355 33.333 0.00 0.00 0.00 2.08
6034 6575 4.492611 GGTTTCCTACTCTCTTAACACGG 58.507 47.826 0.00 0.00 0.00 4.94
6035 6576 4.492611 GGGTTTCCTACTCTCTTAACACG 58.507 47.826 0.00 0.00 0.00 4.49
6043 6584 1.413077 CCATCCGGGTTTCCTACTCTC 59.587 57.143 0.00 0.00 0.00 3.20
6060 6601 1.424302 CTCTGATCCAGAATGCCCCAT 59.576 52.381 0.00 0.00 40.18 4.00
6070 6611 3.842007 AATTCCTCTGCTCTGATCCAG 57.158 47.619 0.00 0.00 0.00 3.86
6071 6612 3.389329 GGTAATTCCTCTGCTCTGATCCA 59.611 47.826 0.00 0.00 0.00 3.41
6085 6626 3.744660 AGATGCCGATCAAGGTAATTCC 58.255 45.455 0.00 0.00 0.00 3.01
6100 6641 4.276926 CAGTTCCAGCCTTATTTAGATGCC 59.723 45.833 0.00 0.00 0.00 4.40
6120 6661 6.916360 AAAATGTTGACACATAATCCCAGT 57.084 33.333 0.00 0.00 43.34 4.00
6150 6692 5.968254 TCTGATGTGCTACACCGTTTATAA 58.032 37.500 0.00 0.00 32.73 0.98
6163 6705 3.575256 TGCCAAAGAAAATCTGATGTGCT 59.425 39.130 0.00 0.00 0.00 4.40
6164 6706 3.916761 TGCCAAAGAAAATCTGATGTGC 58.083 40.909 0.00 0.00 0.00 4.57
6174 6716 3.516615 CTCACGGTTTTGCCAAAGAAAA 58.483 40.909 0.00 0.00 36.97 2.29
6206 6748 9.116067 TGCACCACCTGAAGTAAAATAATATAC 57.884 33.333 0.00 0.00 0.00 1.47
6207 6749 9.860650 ATGCACCACCTGAAGTAAAATAATATA 57.139 29.630 0.00 0.00 0.00 0.86
6208 6750 8.766994 ATGCACCACCTGAAGTAAAATAATAT 57.233 30.769 0.00 0.00 0.00 1.28
6209 6751 9.116067 GTATGCACCACCTGAAGTAAAATAATA 57.884 33.333 0.00 0.00 0.00 0.98
6224 6777 0.322456 TTGCCAGAGTATGCACCACC 60.322 55.000 0.00 0.00 37.18 4.61
6228 6781 2.420022 ACGATTTTGCCAGAGTATGCAC 59.580 45.455 0.00 0.00 37.18 4.57
6235 6788 4.409570 CATCAAAGACGATTTTGCCAGAG 58.590 43.478 10.21 0.00 37.83 3.35
6261 6814 3.328505 GCAAACAATTTCCACATCAGGG 58.671 45.455 0.00 0.00 0.00 4.45
6296 7399 7.492344 GGCCACCATAAAATACTTTGAATGAAG 59.508 37.037 0.00 0.00 0.00 3.02
6331 7485 1.610624 GCCCAGAAACAGAACGGATCA 60.611 52.381 0.00 0.00 0.00 2.92
6335 7489 0.821711 TTGGCCCAGAAACAGAACGG 60.822 55.000 0.00 0.00 0.00 4.44
6368 7522 6.239120 GCCTGCATGATTATTCTAATGGTTGT 60.239 38.462 0.00 0.00 0.00 3.32
6405 7559 5.407084 AGCATTTTTATTAAACAACGGGCAC 59.593 36.000 0.00 0.00 0.00 5.01
6508 7677 8.807581 GCTGATTATTGTTGCTTTAATAACCAC 58.192 33.333 0.00 0.00 33.15 4.16
6531 7700 9.651913 GGGATAGAGAGAATAGAAAATAAGCTG 57.348 37.037 0.00 0.00 0.00 4.24
6542 7711 5.533154 AGTGTCGTTGGGATAGAGAGAATAG 59.467 44.000 0.00 0.00 0.00 1.73
6544 7713 4.282496 AGTGTCGTTGGGATAGAGAGAAT 58.718 43.478 0.00 0.00 0.00 2.40
6546 7715 3.367646 AGTGTCGTTGGGATAGAGAGA 57.632 47.619 0.00 0.00 0.00 3.10
6548 7717 4.232188 ACTAGTGTCGTTGGGATAGAGA 57.768 45.455 0.00 0.00 0.00 3.10
6549 7718 4.880120 TGTACTAGTGTCGTTGGGATAGAG 59.120 45.833 5.39 0.00 0.00 2.43
6550 7719 4.847198 TGTACTAGTGTCGTTGGGATAGA 58.153 43.478 5.39 0.00 0.00 1.98
6552 7721 4.592942 ACTGTACTAGTGTCGTTGGGATA 58.407 43.478 5.39 0.00 38.49 2.59
6553 7722 3.428532 ACTGTACTAGTGTCGTTGGGAT 58.571 45.455 5.39 0.00 38.49 3.85
6556 7725 3.755378 ACCTACTGTACTAGTGTCGTTGG 59.245 47.826 5.39 11.43 40.65 3.77
6557 7726 5.368256 AACCTACTGTACTAGTGTCGTTG 57.632 43.478 5.39 0.77 40.65 4.10
6558 7727 7.510549 TTAAACCTACTGTACTAGTGTCGTT 57.489 36.000 5.39 0.00 40.65 3.85
6559 7728 7.510549 TTTAAACCTACTGTACTAGTGTCGT 57.489 36.000 5.39 1.94 40.65 4.34
6560 7729 8.801715 TTTTTAAACCTACTGTACTAGTGTCG 57.198 34.615 5.39 0.00 40.65 4.35
6592 7761 5.472820 AGAGCGTCTTTAACACTGTACTAGT 59.527 40.000 0.00 0.00 41.36 2.57
6593 7762 5.940595 AGAGCGTCTTTAACACTGTACTAG 58.059 41.667 0.00 0.00 0.00 2.57
6594 7763 5.954296 AGAGCGTCTTTAACACTGTACTA 57.046 39.130 0.00 0.00 0.00 1.82
6595 7764 4.850347 AGAGCGTCTTTAACACTGTACT 57.150 40.909 0.00 0.00 0.00 2.73
6596 7765 8.853469 ATATAAGAGCGTCTTTAACACTGTAC 57.147 34.615 5.74 0.00 37.89 2.90
6609 7778 4.157289 TCCGTCCCATAATATAAGAGCGTC 59.843 45.833 0.00 0.00 0.00 5.19
6612 7781 5.652891 TCTCTCCGTCCCATAATATAAGAGC 59.347 44.000 0.00 0.00 0.00 4.09
6613 7782 6.887545 ACTCTCTCCGTCCCATAATATAAGAG 59.112 42.308 0.00 0.00 33.36 2.85
6626 7795 6.091986 CCGTTTATATAGTACTCTCTCCGTCC 59.908 46.154 0.00 0.00 0.00 4.79
6630 7799 8.564509 ACATCCGTTTATATAGTACTCTCTCC 57.435 38.462 0.00 0.00 0.00 3.71
6631 7800 9.828852 CAACATCCGTTTATATAGTACTCTCTC 57.171 37.037 0.00 0.00 31.13 3.20
6634 7803 7.082602 CGCAACATCCGTTTATATAGTACTCT 58.917 38.462 0.00 0.00 31.13 3.24
6635 7804 6.307318 CCGCAACATCCGTTTATATAGTACTC 59.693 42.308 0.00 0.00 31.13 2.59
6664 7833 2.903855 GGATGCAGGCGGATGTGG 60.904 66.667 0.00 0.00 0.00 4.17
6666 7835 1.766059 TAGGGATGCAGGCGGATGT 60.766 57.895 0.00 0.00 0.00 3.06
6681 7850 3.821421 ACCGGAAGCTTCTAATGTAGG 57.179 47.619 25.05 17.43 0.00 3.18
6708 7877 2.125512 CTCCTCTGTTTCGGCGGG 60.126 66.667 7.21 0.00 0.00 6.13
6711 7880 1.219393 CCCTCTCCTCTGTTTCGGC 59.781 63.158 0.00 0.00 0.00 5.54


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.