AutoCloner

Multiple sequence alignment - TraesCS7D01G128700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS7D01G128700	chr7D	100.000	3889	0	0	1	3889	80783151	80779263	0.000000e+00	7182.0
1	TraesCS7D01G128700	chr7B	93.076	3394	140	39	577	3889	28002398	27999019	0.000000e+00	4878.0
2	TraesCS7D01G128700	chr7B	95.793	2781	89	12	458	3224	28306728	28303962	0.000000e+00	4462.0
3	TraesCS7D01G128700	chr7B	82.587	603	101	4	950	1550	711534113	711534713	2.660000e-146	529.0
4	TraesCS7D01G128700	chr7B	94.074	135	7	1	1	134	28307236	28307102	1.830000e-48	204.0
5	TraesCS7D01G128700	chr7B	80.623	289	24	18	233	498	28306936	28306657	1.100000e-45	195.0
6	TraesCS7D01G128700	chr7B	91.791	134	9	2	1	133	28002902	28002770	6.640000e-43	185.0
7	TraesCS7D01G128700	chr7B	87.931	58	7	0	3349	3406	660336593	660336536	6.970000e-08	69.4
8	TraesCS7D01G128700	chr7A	95.367	2633	82	24	458	3078	83534262	83531658	0.000000e+00	4150.0
9	TraesCS7D01G128700	chr7A	90.012	811	39	11	3112	3889	83530091	83529290	0.000000e+00	1011.0
10	TraesCS7D01G128700	chr7A	87.903	248	15	7	3103	3336	83530670	83530424	1.060000e-70	278.0
11	TraesCS7D01G128700	chr7A	91.584	202	12	2	300	499	83534392	83534194	1.380000e-69	274.0
12	TraesCS7D01G128700	chr7A	90.909	154	12	1	1	154	83534828	83534677	5.090000e-49	206.0
13	TraesCS7D01G128700	chr7A	97.368	38	0	1	3408	3445	83530373	83530337	3.240000e-06	63.9
14	TraesCS7D01G128700	chr1A	88.000	750	88	2	1546	2294	555689532	555690280	0.000000e+00	885.0
15	TraesCS7D01G128700	chr1A	83.815	692	97	8	864	1544	555687931	555688618	0.000000e+00	643.0
16	TraesCS7D01G128700	chr1A	77.308	1018	158	42	2274	3247	555690350	555691338	2.060000e-147	532.0
17	TraesCS7D01G128700	chr4A	87.782	753	90	2	1546	2297	632936289	632935538	0.000000e+00	880.0
18	TraesCS7D01G128700	chr4A	84.486	593	88	4	956	1547	632937789	632937200	2.010000e-162	582.0
19	TraesCS7D01G128700	chr4A	77.996	1018	161	38	2274	3247	632935471	632934473	7.240000e-162	580.0
20	TraesCS7D01G128700	chr3B	87.867	750	89	2	1546	2294	752214641	752215389	0.000000e+00	880.0
21	TraesCS7D01G128700	chr3B	78.094	1018	160	38	2274	3247	752215459	752216457	1.560000e-163	586.0
22	TraesCS7D01G128700	chr3B	81.283	561	96	8	2356	2909	4760660	4761218	2.760000e-121	446.0
23	TraesCS7D01G128700	chr2B	87.649	753	91	2	1546	2297	245809893	245809142	0.000000e+00	874.0
24	TraesCS7D01G128700	chr2B	84.035	689	95	10	870	1547	245811488	245810804	0.000000e+00	649.0
25	TraesCS7D01G128700	chr2B	77.767	1003	160	38	2274	3232	245809075	245808092	3.390000e-155	558.0
26	TraesCS7D01G128700	chr2B	91.667	60	5	0	3438	3497	27892493	27892552	2.490000e-12	84.2
27	TraesCS7D01G128700	chr2B	97.872	47	1	0	3340	3386	754008477	754008523	8.960000e-12	82.4
28	TraesCS7D01G128700	chr1B	87.049	749	97	0	1546	2294	365016063	365016811	0.000000e+00	846.0
29	TraesCS7D01G128700	chr1B	86.968	752	98	0	1546	2297	366293028	366292277	0.000000e+00	846.0
30	TraesCS7D01G128700	chr1B	82.587	603	101	4	950	1550	365014556	365015156	2.660000e-146	529.0
31	TraesCS7D01G128700	chr1B	82.587	603	101	4	950	1550	366294535	366293935	2.660000e-146	529.0
32	TraesCS7D01G128700	chrUn	76.320	587	96	28	2691	3247	335557060	335557633	1.380000e-69	274.0
33	TraesCS7D01G128700	chr6D	74.468	799	122	47	2493	3247	140324885	140324125	1.780000e-68	270.0
34	TraesCS7D01G128700	chr5B	93.333	60	4	0	3438	3497	664951600	664951659	5.350000e-14	89.8
35	TraesCS7D01G128700	chr5B	88.889	63	5	2	3438	3500	40979551	40979491	4.170000e-10	76.8
36	TraesCS7D01G128700	chr5D	96.154	52	2	0	3447	3498	422943151	422943202	6.920000e-13	86.1
37	TraesCS7D01G128700	chr5D	91.667	60	1	3	3438	3497	528145907	528145962	3.220000e-11	80.5
38	TraesCS7D01G128700	chr1D	97.872	47	1	0	3340	3386	320590004	320589958	8.960000e-12	82.4
39	TraesCS7D01G128700	chr1D	92.857	56	1	2	3438	3493	222022265	222022317	1.160000e-10	78.7
40	TraesCS7D01G128700	chr1D	90.000	60	6	0	3340	3399	319515806	319515747	1.160000e-10	78.7
41	TraesCS7D01G128700	chr2A	88.235	68	5	3	3433	3498	727188177	727188111	1.160000e-10	78.7
42	TraesCS7D01G128700	chr2A	93.333	45	3	0	3341	3385	94164823	94164779	2.510000e-07	67.6
43	TraesCS7D01G128700	chr3D	86.957	69	7	2	3453	3521	565995261	565995327	4.170000e-10	76.8
44	TraesCS7D01G128700	chr6B	95.652	46	2	0	3341	3386	613114997	613115042	1.500000e-09	75.0
45	TraesCS7D01G128700	chr6A	95.652	46	2	0	3341	3386	554462555	554462600	1.500000e-09	75.0
46	TraesCS7D01G128700	chr3A	85.294	68	8	2	3333	3398	518640248	518640181	6.970000e-08	69.4

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS7D01G128700	chr7D	80779263	80783151	3888	True	7182.000000	7182	100.000000	1	3889	1	chr7D.!!$R1	3888
1	TraesCS7D01G128700	chr7B	27999019	28002902	3883	True	2531.500000	4878	92.433500	1	3889	2	chr7B.!!$R2	3888
2	TraesCS7D01G128700	chr7B	28303962	28307236	3274	True	1620.333333	4462	90.163333	1	3224	3	chr7B.!!$R3	3223
3	TraesCS7D01G128700	chr7B	711534113	711534713	600	False	529.000000	529	82.587000	950	1550	1	chr7B.!!$F1	600
4	TraesCS7D01G128700	chr7A	83529290	83534828	5538	True	997.150000	4150	92.190500	1	3889	6	chr7A.!!$R1	3888
5	TraesCS7D01G128700	chr1A	555687931	555691338	3407	False	686.666667	885	83.041000	864	3247	3	chr1A.!!$F1	2383
6	TraesCS7D01G128700	chr4A	632934473	632937789	3316	True	680.666667	880	83.421333	956	3247	3	chr4A.!!$R1	2291
7	TraesCS7D01G128700	chr3B	752214641	752216457	1816	False	733.000000	880	82.980500	1546	3247	2	chr3B.!!$F2	1701
8	TraesCS7D01G128700	chr3B	4760660	4761218	558	False	446.000000	446	81.283000	2356	2909	1	chr3B.!!$F1	553
9	TraesCS7D01G128700	chr2B	245808092	245811488	3396	True	693.666667	874	83.150333	870	3232	3	chr2B.!!$R1	2362
10	TraesCS7D01G128700	chr1B	365014556	365016811	2255	False	687.500000	846	84.818000	950	2294	2	chr1B.!!$F1	1344
11	TraesCS7D01G128700	chr1B	366292277	366294535	2258	True	687.500000	846	84.777500	950	2297	2	chr1B.!!$R1	1347
12	TraesCS7D01G128700	chrUn	335557060	335557633	573	False	274.000000	274	76.320000	2691	3247	1	chrUn.!!$F1	556
13	TraesCS7D01G128700	chr6D	140324125	140324885	760	True	270.000000	270	74.468000	2493	3247	1	chr6D.!!$R1	754

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
330	488	0.110192	GAAAGGCAGCTCGGTTTTCG	60.110	55.0	0.0	0.0	40.9	3.46	F
1309	1516	0.389391	TCGCTATGGTAAGGCTCAGC	59.611	55.0	0.0	0.0	0.0	4.26	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1517	1724	0.103572	TACTCGTATTTCAGCCGGGC	59.896	55.000	12.11	12.11	0.0	6.13	R
3117	5330	4.917906	ACAGTTGGAATAGAAAGCTCCT	57.082	40.909	0.00	0.00	0.0	3.69	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
77	78	2.356553	ACCAACGCGCGCTTCTAA	60.357	55.556	32.58	0.00	0.00	2.10
215	321	7.530426	AAATGAATAATAACCCTCCTGATGC	57.470	36.000	0.00	0.00	0.00	3.91
216	322	4.985538	TGAATAATAACCCTCCTGATGCC	58.014	43.478	0.00	0.00	0.00	4.40
217	323	3.703001	ATAATAACCCTCCTGATGCCG	57.297	47.619	0.00	0.00	0.00	5.69
218	324	0.474184	AATAACCCTCCTGATGCCGG	59.526	55.000	0.00	0.00	0.00	6.13
219	325	1.418908	ATAACCCTCCTGATGCCGGG	61.419	60.000	2.18	0.00	42.53	5.73
221	327	3.866582	CCCTCCTGATGCCGGGTC	61.867	72.222	2.18	0.00	39.88	4.46
222	328	2.765807	CCTCCTGATGCCGGGTCT	60.766	66.667	2.18	0.00	39.88	3.85
223	329	2.801631	CCTCCTGATGCCGGGTCTC	61.802	68.421	2.18	0.00	39.88	3.36
224	330	2.038813	TCCTGATGCCGGGTCTCA	59.961	61.111	2.18	0.00	39.88	3.27
226	332	2.060383	CCTGATGCCGGGTCTCAGA	61.060	63.158	21.98	0.00	38.96	3.27
227	333	1.617018	CCTGATGCCGGGTCTCAGAA	61.617	60.000	21.98	0.00	38.96	3.02
228	334	0.467384	CTGATGCCGGGTCTCAGAAT	59.533	55.000	17.82	0.00	38.96	2.40
229	335	0.465705	TGATGCCGGGTCTCAGAATC	59.534	55.000	2.18	0.00	0.00	2.52
230	336	0.250081	GATGCCGGGTCTCAGAATCC	60.250	60.000	2.18	0.00	0.00	3.01
239	360	1.902508	GTCTCAGAATCCAGGGTCACA	59.097	52.381	0.00	0.00	0.00	3.58
240	361	2.093764	GTCTCAGAATCCAGGGTCACAG	60.094	54.545	0.00	0.00	0.00	3.66
293	420	6.373186	AAAGATAAAGTGCCGCTATTTACC	57.627	37.500	0.00	0.00	0.00	2.85
302	430	3.200385	TGCCGCTATTTACCTAGGGAAAA	59.800	43.478	23.20	17.18	34.50	2.29
330	488	0.110192	GAAAGGCAGCTCGGTTTTCG	60.110	55.000	0.00	0.00	40.90	3.46
454	612	1.878522	GTCGCCGCCTATCACAGTG	60.879	63.158	0.00	0.00	0.00	3.66
455	613	2.586079	CGCCGCCTATCACAGTGG	60.586	66.667	0.00	0.00	0.00	4.00
456	614	2.584608	GCCGCCTATCACAGTGGT	59.415	61.111	0.00	0.00	0.00	4.16
483	641	2.517450	GCGCCGCTCATCACAGTAC	61.517	63.158	0.00	0.00	0.00	2.73
484	642	1.153842	CGCCGCTCATCACAGTACA	60.154	57.895	0.00	0.00	0.00	2.90
485	643	1.413767	CGCCGCTCATCACAGTACAC	61.414	60.000	0.00	0.00	0.00	2.90
486	644	1.084370	GCCGCTCATCACAGTACACC	61.084	60.000	0.00	0.00	0.00	4.16
487	645	0.802222	CCGCTCATCACAGTACACCG	60.802	60.000	0.00	0.00	0.00	4.94
488	646	1.413767	CGCTCATCACAGTACACCGC	61.414	60.000	0.00	0.00	0.00	5.68
489	647	1.413767	GCTCATCACAGTACACCGCG	61.414	60.000	0.00	0.00	0.00	6.46
490	648	1.413767	CTCATCACAGTACACCGCGC	61.414	60.000	0.00	0.00	0.00	6.86
491	649	2.506217	ATCACAGTACACCGCGCG	60.506	61.111	25.67	25.67	0.00	6.86
492	650	3.982372	ATCACAGTACACCGCGCGG	62.982	63.158	44.88	44.88	42.03	6.46
557	715	3.569200	GACTTGGGGGTGGAGTGCC	62.569	68.421	0.00	0.00	0.00	5.01
613	771	1.137282	CTAGGAGGCGAGGTTCCTTTC	59.863	57.143	0.00	0.00	40.96	2.62
729	901	2.099141	TGTGTAATGGCTGTGCTCTC	57.901	50.000	0.00	0.00	0.00	3.20
749	921	0.960861	GAGTTGGCTGTAAGTGGGGC	60.961	60.000	0.00	0.00	35.30	5.80
801	973	4.986034	TGCTCAACTTTTGCATCTTTCATG	59.014	37.500	0.00	0.00	0.00	3.07
806	978	5.710513	ACTTTTGCATCTTTCATGTAGCA	57.289	34.783	0.00	0.00	0.00	3.49
844	1019	1.938577	TGCCTTTGCGTGTAAACGTTA	59.061	42.857	7.39	0.00	41.78	3.18
845	1020	2.286301	TGCCTTTGCGTGTAAACGTTAC	60.286	45.455	7.39	1.01	41.78	2.50
846	1021	2.552736	CCTTTGCGTGTAAACGTTACG	58.447	47.619	15.81	15.81	40.52	3.18
847	1022	2.033832	CCTTTGCGTGTAAACGTTACGT	60.034	45.455	19.75	3.95	43.97	3.57
980	1186	9.760077	ATTGCCTTTGAATGAGAATGATTAATC	57.240	29.630	8.60	8.60	0.00	1.75
1088	1295	4.953940	TTAAGCAACAAAGGGAAAGCAT	57.046	36.364	0.00	0.00	0.00	3.79
1102	1309	2.971676	AGCATTGTGGAGCTTGCAT	58.028	47.368	8.43	0.00	38.01	3.96
1104	1311	1.747355	AGCATTGTGGAGCTTGCATAC	59.253	47.619	8.43	0.00	38.01	2.39
1196	1403	6.119536	AGAATGAGGTGAGAGAGTACTACAG	58.880	44.000	0.00	0.00	0.00	2.74
1309	1516	0.389391	TCGCTATGGTAAGGCTCAGC	59.611	55.000	0.00	0.00	0.00	4.26
1672	2791	2.977914	ACTGTGATCGGAAGTTGATGG	58.022	47.619	0.00	0.00	0.00	3.51
1750	2869	7.497249	ACGAAGATAAAGGATGGAGAAAAGATG	59.503	37.037	0.00	0.00	0.00	2.90
2164	3283	2.270352	TGCACCTTCGAATGGAAAGT	57.730	45.000	17.18	0.00	33.34	2.66
3117	5330	8.984541	TGGATACGCCATATGTGCATATGACTA	61.985	40.741	25.40	14.90	45.87	2.59
3233	6029	7.614192	TGTAGTGTAAGATGACTCTTCCATGTA	59.386	37.037	0.00	0.00	40.92	2.29
3336	6146	7.482169	TCACAGAAAAGTATCACCTCTGTAT	57.518	36.000	2.92	0.00	43.68	2.29
3339	6149	7.490725	CACAGAAAAGTATCACCTCTGTATCAG	59.509	40.741	2.92	0.00	43.68	2.90
3441	6262	7.176165	AGCAGACAGATTTCTTTTTCATGATCA	59.824	33.333	0.00	0.00	0.00	2.92
3442	6263	7.272948	GCAGACAGATTTCTTTTTCATGATCAC	59.727	37.037	0.00	0.00	0.00	3.06
3443	6264	8.512956	CAGACAGATTTCTTTTTCATGATCACT	58.487	33.333	0.00	0.00	0.00	3.41
3444	6265	9.730705	AGACAGATTTCTTTTTCATGATCACTA	57.269	29.630	0.00	0.00	0.00	2.74
3501	6342	5.391256	TCTTTACAGAGGGAGTACAAGTCA	58.609	41.667	0.00	0.00	0.00	3.41
3554	6395	6.017357	CCAGAACTAGACAACCTTGGTTTTAC	60.017	42.308	1.76	0.00	0.00	2.01
3573	6414	9.032420	GGTTTTACTGATAAGATCGGAGTTTAG	57.968	37.037	2.30	0.00	39.01	1.85
3577	6418	7.648039	ACTGATAAGATCGGAGTTTAGAACT	57.352	36.000	2.30	0.00	46.38	3.01
3595	6436	9.809096	TTTAGAACTGCACAAATTCATTTAACA	57.191	25.926	0.00	0.00	0.00	2.41
3689	6532	3.578282	TCTGTTCCAGAGACAAGTGCATA	59.422	43.478	0.00	0.00	35.39	3.14
3764	6611	0.962356	CTTGGTGCTTCTTGCCGGAT	60.962	55.000	5.05	0.00	42.00	4.18
3818	6668	0.107017	TATGCCTCTCCCTGCAAAGC	60.107	55.000	0.00	0.00	41.50	3.51
3867	6717	4.283978	TCCAATTCATTTTCAGTGGCACAT	59.716	37.500	21.41	0.36	44.52	3.21

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
144	155	2.092646	TGGTATGAATTTCACCTCGGGG	60.093	50.000	0.00	0.00	38.88	5.73
200	306	1.418908	CCCGGCATCAGGAGGGTTAT	61.419	60.000	0.00	0.00	39.05	1.89
201	307	2.070039	CCCGGCATCAGGAGGGTTA	61.070	63.158	0.00	0.00	39.05	2.85
205	311	2.765807	AGACCCGGCATCAGGAGG	60.766	66.667	0.00	0.00	0.00	4.30
206	312	2.025767	CTGAGACCCGGCATCAGGAG	62.026	65.000	16.79	2.98	37.41	3.69
208	314	1.617018	TTCTGAGACCCGGCATCAGG	61.617	60.000	21.55	9.15	40.68	3.86
209	315	0.467384	ATTCTGAGACCCGGCATCAG	59.533	55.000	17.93	17.93	41.47	2.90
213	319	1.612146	TGGATTCTGAGACCCGGCA	60.612	57.895	0.00	0.00	0.00	5.69
214	320	1.144936	CTGGATTCTGAGACCCGGC	59.855	63.158	0.00	0.00	0.00	6.13
215	321	1.690219	CCCTGGATTCTGAGACCCGG	61.690	65.000	0.00	0.00	0.00	5.73
216	322	0.978146	ACCCTGGATTCTGAGACCCG	60.978	60.000	0.00	0.00	0.00	5.28
217	323	0.833949	GACCCTGGATTCTGAGACCC	59.166	60.000	0.00	0.00	0.00	4.46
218	324	1.208293	GTGACCCTGGATTCTGAGACC	59.792	57.143	0.00	0.00	0.00	3.85
219	325	1.902508	TGTGACCCTGGATTCTGAGAC	59.097	52.381	0.00	0.00	0.00	3.36
221	327	1.406614	GCTGTGACCCTGGATTCTGAG	60.407	57.143	0.00	0.00	0.00	3.35
222	328	0.615331	GCTGTGACCCTGGATTCTGA	59.385	55.000	0.00	0.00	0.00	3.27
223	329	0.742281	CGCTGTGACCCTGGATTCTG	60.742	60.000	0.00	0.00	0.00	3.02
224	330	1.599047	CGCTGTGACCCTGGATTCT	59.401	57.895	0.00	0.00	0.00	2.40
226	332	2.224159	ACCGCTGTGACCCTGGATT	61.224	57.895	0.00	0.00	0.00	3.01
227	333	2.607750	ACCGCTGTGACCCTGGAT	60.608	61.111	0.00	0.00	0.00	3.41
228	334	3.625897	CACCGCTGTGACCCTGGA	61.626	66.667	1.41	0.00	45.76	3.86
229	335	3.625897	TCACCGCTGTGACCCTGG	61.626	66.667	6.89	0.00	46.40	4.45
239	360	1.677820	CCCCTTTTATCGTTCACCGCT	60.678	52.381	0.00	0.00	36.19	5.52
240	361	0.730840	CCCCTTTTATCGTTCACCGC	59.269	55.000	0.00	0.00	36.19	5.68
302	430	0.105504	AGCTGCCTTTCTGGGGTTTT	60.106	50.000	0.00	0.00	36.00	2.43
306	434	2.437359	CGAGCTGCCTTTCTGGGG	60.437	66.667	0.00	0.00	36.00	4.96
445	603	1.140161	GCGCGGTACCACTGTGATA	59.860	57.895	13.54	0.00	37.15	2.15
472	630	1.445410	GCGCGGTGTACTGTGATGA	60.445	57.895	8.83	0.00	34.80	2.92
491	649	3.716539	TACTGTGATGAGCGGCGCC	62.717	63.158	30.40	19.07	0.00	6.53
492	650	2.202743	TACTGTGATGAGCGGCGC	60.203	61.111	26.86	26.86	0.00	6.53
493	651	1.153842	TGTACTGTGATGAGCGGCG	60.154	57.895	0.51	0.51	0.00	6.46
494	652	1.084370	GGTGTACTGTGATGAGCGGC	61.084	60.000	0.00	0.00	0.00	6.53
495	653	0.802222	CGGTGTACTGTGATGAGCGG	60.802	60.000	0.00	0.00	0.00	5.52
496	654	1.413767	GCGGTGTACTGTGATGAGCG	61.414	60.000	0.00	0.00	0.00	5.03
497	655	1.413767	CGCGGTGTACTGTGATGAGC	61.414	60.000	0.00	0.00	34.80	4.26
498	656	1.413767	GCGCGGTGTACTGTGATGAG	61.414	60.000	8.83	0.00	34.80	2.90
499	657	1.445410	GCGCGGTGTACTGTGATGA	60.445	57.895	8.83	0.00	34.80	2.92
531	689	0.037232	CACCCCCAAGTCGTCTTCTC	60.037	60.000	0.00	0.00	0.00	2.87
729	901	0.673644	CCCCACTTACAGCCAACTCG	60.674	60.000	0.00	0.00	0.00	4.18
847	1022	2.322081	GCTCCGGTTGCGCTAACAA	61.322	57.895	19.45	0.00	41.18	2.83
848	1023	2.740826	GCTCCGGTTGCGCTAACA	60.741	61.111	19.45	0.00	41.18	2.41
849	1024	2.740826	TGCTCCGGTTGCGCTAAC	60.741	61.111	9.73	11.45	38.60	2.34
1088	1295	1.305219	GCCGTATGCAAGCTCCACAA	61.305	55.000	0.00	0.00	40.77	3.33
1102	1309	3.642778	GAGCTTCAGCACGGCCGTA	62.643	63.158	33.70	13.50	45.16	4.02
1309	1516	5.393461	GCTTCAACATATTTCCTGAGTTGGG	60.393	44.000	0.00	0.00	39.84	4.12
1368	1575	3.997021	CAGGAGCACGGGTAATATTGATC	59.003	47.826	0.00	0.00	0.00	2.92
1488	1695	2.734591	AGCCTTCGCTTGACACGA	59.265	55.556	0.00	0.00	45.55	4.35
1517	1724	0.103572	TACTCGTATTTCAGCCGGGC	59.896	55.000	12.11	12.11	0.00	6.13
1672	2791	1.129058	TCTATCGCCCCCTCCTTTTC	58.871	55.000	0.00	0.00	0.00	2.29
1750	2869	4.695455	ACTGAAGTATACATGGTGCACAAC	59.305	41.667	20.43	2.20	0.00	3.32
2164	3283	8.212312	TGGACTTGGTATAGTTTTACTTGTTGA	58.788	33.333	0.00	0.00	0.00	3.18
3117	5330	4.917906	ACAGTTGGAATAGAAAGCTCCT	57.082	40.909	0.00	0.00	0.00	3.69
3233	6029	6.376299	TGATGCTGATGCTTTAGACAAGATTT	59.624	34.615	0.00	0.00	40.48	2.17
3397	6218	7.847096	TGTCTGCTAGAAACATCCTTATGTAA	58.153	34.615	0.00	0.00	45.79	2.41
3445	6266	9.635404	AGAGCATTTAGATCACTACTACTACTT	57.365	33.333	0.00	0.00	34.30	2.24
3446	6267	9.635404	AAGAGCATTTAGATCACTACTACTACT	57.365	33.333	0.00	0.00	34.30	2.57
3466	6306	8.319057	TCCCTCTGTAAAGAAATATAAGAGCA	57.681	34.615	0.00	0.00	0.00	4.26
3497	6338	6.712095	TGAAAGATTGTAAAGCATGAGTGACT	59.288	34.615	0.00	0.00	32.26	3.41
3501	6342	7.945134	AGTTTGAAAGATTGTAAAGCATGAGT	58.055	30.769	0.00	0.00	32.26	3.41
3554	6395	6.419413	GCAGTTCTAAACTCCGATCTTATCAG	59.581	42.308	0.00	0.00	40.46	2.90
3573	6414	7.462109	TGTGTTAAATGAATTTGTGCAGTTC	57.538	32.000	0.00	0.00	0.00	3.01
3577	6418	7.840342	ACTTTGTGTTAAATGAATTTGTGCA	57.160	28.000	0.00	0.00	0.00	4.57
3595	6436	7.148154	TGCTGTTGATTGTAACTTGTACTTTGT	60.148	33.333	0.00	0.00	0.00	2.83
3644	6487	2.987413	TAACTGGAATGCGCAACTTG	57.013	45.000	17.11	6.71	0.00	3.16
3689	6532	5.172934	CAATTAGCACATGAGGTTGCAATT	58.827	37.500	0.59	5.38	0.00	2.32
3764	6611	4.502604	GCCTAGGTTATATTCTCCGTGCAA	60.503	45.833	11.31	0.00	0.00	4.08
3818	6668	8.807667	AAATGACTCTGCTTTTATTGTTTCTG	57.192	30.769	0.00	0.00	0.00	3.02

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.