Multiple sequence alignment - TraesCS7D01G128400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G128400 chr7D 100.000 5477 0 0 1 5477 80717543 80712067 0.000000e+00 10115.0
1 TraesCS7D01G128400 chr7D 86.387 595 75 6 4724 5316 136414329 136414919 0.000000e+00 645.0
2 TraesCS7D01G128400 chr7D 86.097 597 76 6 4724 5317 460528003 460527411 2.150000e-178 636.0
3 TraesCS7D01G128400 chr7D 80.000 475 65 18 3874 4336 54758815 54758359 1.900000e-84 324.0
4 TraesCS7D01G128400 chr7D 77.855 289 47 11 839 1114 555879565 555879849 4.390000e-36 163.0
5 TraesCS7D01G128400 chr7A 88.794 1990 133 40 1207 3147 83299770 83297822 0.000000e+00 2357.0
6 TraesCS7D01G128400 chr7A 85.763 1468 165 32 3264 4711 83292815 83291372 0.000000e+00 1513.0
7 TraesCS7D01G128400 chr7A 79.179 1047 165 36 3306 4326 58234941 58235960 0.000000e+00 676.0
8 TraesCS7D01G128400 chr7A 79.955 449 67 10 4157 4595 83494109 83493674 5.330000e-80 309.0
9 TraesCS7D01G128400 chr7B 93.178 1246 63 13 1309 2538 28063051 28061812 0.000000e+00 1810.0
10 TraesCS7D01G128400 chr7B 88.109 1539 137 20 2827 4354 28061158 28059655 0.000000e+00 1786.0
11 TraesCS7D01G128400 chr7B 84.245 768 41 37 44 783 742226696 742225981 0.000000e+00 675.0
12 TraesCS7D01G128400 chr7B 86.294 591 74 7 4731 5318 104298913 104298327 2.150000e-178 636.0
13 TraesCS7D01G128400 chr7B 88.976 508 27 13 1 504 710959470 710959952 7.850000e-168 601.0
14 TraesCS7D01G128400 chr7B 83.626 342 46 6 786 1123 28067158 28066823 4.120000e-81 313.0
15 TraesCS7D01G128400 chr7B 97.619 168 4 0 1151 1318 28063411 28063244 6.940000e-74 289.0
16 TraesCS7D01G128400 chr7B 79.661 295 43 9 842 1122 24414107 24413816 4.330000e-46 196.0
17 TraesCS7D01G128400 chr7B 81.250 192 26 7 4524 4711 28059473 28059288 4.420000e-31 147.0
18 TraesCS7D01G128400 chr3D 91.114 799 30 10 1 783 5818810 5818037 0.000000e+00 1044.0
19 TraesCS7D01G128400 chr3D 86.235 603 73 9 4724 5324 562514025 562514619 0.000000e+00 645.0
20 TraesCS7D01G128400 chr3D 86.242 596 75 4 4724 5317 15377129 15377719 1.660000e-179 640.0
21 TraesCS7D01G128400 chr3D 84.516 155 13 5 906 1049 550253142 550253296 5.720000e-30 143.0
22 TraesCS7D01G128400 chr2D 90.909 792 36 14 1 783 77461506 77460742 0.000000e+00 1031.0
23 TraesCS7D01G128400 chr2D 89.732 672 33 14 114 783 86183679 86184316 0.000000e+00 826.0
24 TraesCS7D01G128400 chr2D 86.228 806 44 21 1 787 627624780 627624023 0.000000e+00 811.0
25 TraesCS7D01G128400 chr2D 89.487 390 41 0 2137 2526 584758583 584758972 1.370000e-135 494.0
26 TraesCS7D01G128400 chr2D 84.818 494 63 10 1600 2081 584757992 584758485 2.290000e-133 486.0
27 TraesCS7D01G128400 chr2D 86.761 423 44 6 2716 3126 584759223 584759645 1.390000e-125 460.0
28 TraesCS7D01G128400 chr2D 83.224 459 50 14 3871 4311 584768777 584769226 3.980000e-106 396.0
29 TraesCS7D01G128400 chr2B 90.162 803 33 13 1 790 607251028 607250259 0.000000e+00 1003.0
30 TraesCS7D01G128400 chr2B 88.974 390 43 0 2137 2526 704763666 704764055 2.970000e-132 483.0
31 TraesCS7D01G128400 chr2B 83.499 503 62 9 1600 2081 704763066 704763568 3.010000e-122 449.0
32 TraesCS7D01G128400 chr2B 83.007 459 51 14 3871 4311 704766257 704766706 1.850000e-104 390.0
33 TraesCS7D01G128400 chr2B 76.202 416 75 17 2 406 663590117 663589715 1.200000e-46 198.0
34 TraesCS7D01G128400 chr2B 83.173 208 26 4 2 209 256036506 256036704 1.210000e-41 182.0
35 TraesCS7D01G128400 chr4B 84.328 938 117 22 1598 2526 665302738 665301822 0.000000e+00 891.0
36 TraesCS7D01G128400 chr4B 83.803 710 32 25 111 784 122272534 122271872 1.020000e-166 597.0
37 TraesCS7D01G128400 chr4B 79.000 200 29 8 4105 4302 665300801 665300613 2.070000e-24 124.0
38 TraesCS7D01G128400 chr4B 94.545 55 3 0 1326 1380 642407026 642406972 9.780000e-13 86.1
39 TraesCS7D01G128400 chrUn 83.563 943 124 20 1598 2526 108745916 108746841 0.000000e+00 854.0
40 TraesCS7D01G128400 chrUn 82.359 1009 148 21 3309 4311 108619989 108620973 0.000000e+00 850.0
41 TraesCS7D01G128400 chrUn 82.250 969 130 26 1588 2526 108618406 108619362 0.000000e+00 798.0
42 TraesCS7D01G128400 chrUn 81.818 979 134 23 1600 2538 108754633 108753659 0.000000e+00 782.0
43 TraesCS7D01G128400 chrUn 87.330 442 51 4 2704 3141 108619456 108619896 8.190000e-138 501.0
44 TraesCS7D01G128400 chrUn 87.793 426 51 1 3306 3730 108795244 108794819 1.060000e-136 497.0
45 TraesCS7D01G128400 chrUn 88.861 395 44 0 2132 2526 108800293 108799899 2.290000e-133 486.0
46 TraesCS7D01G128400 chrUn 85.847 431 59 2 2737 3166 108795770 108795341 1.800000e-124 457.0
47 TraesCS7D01G128400 chrUn 78.667 750 107 28 1604 2306 108723833 108723090 3.010000e-122 449.0
48 TraesCS7D01G128400 chrUn 86.553 409 52 1 2716 3121 108753517 108753109 1.080000e-121 448.0
49 TraesCS7D01G128400 chrUn 84.719 445 53 10 2719 3148 108747117 108747561 1.090000e-116 431.0
50 TraesCS7D01G128400 chrUn 83.130 492 59 13 1600 2073 108800903 108800418 1.410000e-115 427.0
51 TraesCS7D01G128400 chrUn 80.533 488 77 15 3870 4354 108752195 108751723 5.220000e-95 359.0
52 TraesCS7D01G128400 chrUn 80.167 479 60 20 3872 4347 108794626 108794180 5.290000e-85 326.0
53 TraesCS7D01G128400 chr5A 83.017 948 123 22 1598 2526 704975624 704974696 0.000000e+00 824.0
54 TraesCS7D01G128400 chr5A 82.500 960 141 17 1600 2538 704948104 704949057 0.000000e+00 817.0
55 TraesCS7D01G128400 chr5A 89.231 390 42 0 2137 2526 705143432 705143821 6.380000e-134 488.0
56 TraesCS7D01G128400 chr5A 84.569 499 58 9 1600 2081 705142838 705143334 1.380000e-130 477.0
57 TraesCS7D01G128400 chr5A 87.775 409 47 2 2716 3121 704949199 704949607 4.960000e-130 475.0
58 TraesCS7D01G128400 chr5A 85.615 431 50 5 2708 3126 705144080 705144510 5.040000e-120 442.0
59 TraesCS7D01G128400 chr5A 83.488 430 56 10 2737 3151 704974411 704973982 2.390000e-103 387.0
60 TraesCS7D01G128400 chr5A 80.972 494 67 13 3871 4346 705146572 705147056 3.120000e-97 366.0
61 TraesCS7D01G128400 chr5A 81.106 434 64 14 3870 4300 704950509 704950927 1.140000e-86 331.0
62 TraesCS7D01G128400 chr5A 80.920 435 61 15 3870 4302 704973224 704972810 1.900000e-84 324.0
63 TraesCS7D01G128400 chr4A 89.001 691 38 15 101 784 624857861 624857202 0.000000e+00 821.0
64 TraesCS7D01G128400 chr1A 88.278 691 44 10 101 784 569210285 569210945 0.000000e+00 793.0
65 TraesCS7D01G128400 chr1A 83.838 792 52 20 19 783 541181473 541182215 0.000000e+00 684.0
66 TraesCS7D01G128400 chr1A 85.502 538 25 22 1 504 579646391 579645873 3.780000e-141 512.0
67 TraesCS7D01G128400 chr1A 80.070 286 44 5 843 1115 591601934 591601649 3.350000e-47 200.0
68 TraesCS7D01G128400 chr4D 81.933 952 116 33 1600 2526 499460413 499459493 0.000000e+00 754.0
69 TraesCS7D01G128400 chr4D 87.352 593 68 6 4726 5318 380465703 380465118 0.000000e+00 673.0
70 TraesCS7D01G128400 chr4D 85.990 414 49 5 2726 3130 499459031 499458618 8.430000e-118 435.0
71 TraesCS7D01G128400 chr4D 81.915 470 65 15 3870 4335 499457953 499457500 4.000000e-101 379.0
72 TraesCS7D01G128400 chr4D 89.744 78 6 2 1326 1403 499460596 499460521 1.260000e-16 99.0
73 TraesCS7D01G128400 chr3B 86.957 598 71 7 4724 5318 586858141 586858734 0.000000e+00 665.0
74 TraesCS7D01G128400 chr1D 86.723 595 71 8 4724 5317 3758612 3759199 0.000000e+00 654.0
75 TraesCS7D01G128400 chr1D 83.028 218 27 5 842 1049 222898313 222898096 7.240000e-44 189.0
76 TraesCS7D01G128400 chr6B 86.815 584 72 5 4724 5306 678928651 678928072 0.000000e+00 647.0
77 TraesCS7D01G128400 chr6B 78.231 294 51 8 842 1123 621310837 621310545 5.640000e-40 176.0
78 TraesCS7D01G128400 chr3A 86.989 538 20 15 1 504 629180127 629180648 1.330000e-155 560.0
79 TraesCS7D01G128400 chr3A 83.283 664 27 30 167 788 574314728 574315349 8.080000e-148 534.0
80 TraesCS7D01G128400 chr3A 85.165 364 25 11 420 783 63842654 63842988 4.060000e-91 346.0
81 TraesCS7D01G128400 chr3A 78.519 135 27 2 839 972 393906508 393906641 2.720000e-13 87.9
82 TraesCS7D01G128400 chr6A 80.301 665 104 21 3313 3959 585972874 585973529 1.380000e-130 477.0
83 TraesCS7D01G128400 chr6A 86.779 416 53 2 2112 2526 585971712 585972126 3.860000e-126 462.0
84 TraesCS7D01G128400 chr6A 90.228 307 30 0 1775 2081 585971267 585971573 8.550000e-108 401.0
85 TraesCS7D01G128400 chr6A 83.863 409 53 7 2727 3124 585972360 585972766 1.440000e-100 377.0
86 TraesCS7D01G128400 chr6A 81.518 303 41 10 4027 4326 585973558 585973848 9.170000e-58 235.0
87 TraesCS7D01G128400 chr6A 79.791 287 47 3 838 1113 563481844 563482130 1.200000e-46 198.0
88 TraesCS7D01G128400 chr1B 85.714 406 12 11 130 504 388196970 388197360 2.390000e-103 387.0
89 TraesCS7D01G128400 chr6D 80.205 293 49 7 839 1123 311898261 311898552 1.550000e-50 211.0
90 TraesCS7D01G128400 chr6D 93.478 46 3 0 1076 1121 27141292 27141247 9.840000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G128400 chr7D 80712067 80717543 5476 True 10115.000000 10115 100.000000 1 5477 1 chr7D.!!$R2 5476
1 TraesCS7D01G128400 chr7D 136414329 136414919 590 False 645.000000 645 86.387000 4724 5316 1 chr7D.!!$F1 592
2 TraesCS7D01G128400 chr7D 460527411 460528003 592 True 636.000000 636 86.097000 4724 5317 1 chr7D.!!$R3 593
3 TraesCS7D01G128400 chr7A 83297822 83299770 1948 True 2357.000000 2357 88.794000 1207 3147 1 chr7A.!!$R2 1940
4 TraesCS7D01G128400 chr7A 83291372 83292815 1443 True 1513.000000 1513 85.763000 3264 4711 1 chr7A.!!$R1 1447
5 TraesCS7D01G128400 chr7A 58234941 58235960 1019 False 676.000000 676 79.179000 3306 4326 1 chr7A.!!$F1 1020
6 TraesCS7D01G128400 chr7B 28059288 28067158 7870 True 869.000000 1810 88.756400 786 4711 5 chr7B.!!$R4 3925
7 TraesCS7D01G128400 chr7B 742225981 742226696 715 True 675.000000 675 84.245000 44 783 1 chr7B.!!$R3 739
8 TraesCS7D01G128400 chr7B 104298327 104298913 586 True 636.000000 636 86.294000 4731 5318 1 chr7B.!!$R2 587
9 TraesCS7D01G128400 chr3D 5818037 5818810 773 True 1044.000000 1044 91.114000 1 783 1 chr3D.!!$R1 782
10 TraesCS7D01G128400 chr3D 562514025 562514619 594 False 645.000000 645 86.235000 4724 5324 1 chr3D.!!$F3 600
11 TraesCS7D01G128400 chr3D 15377129 15377719 590 False 640.000000 640 86.242000 4724 5317 1 chr3D.!!$F1 593
12 TraesCS7D01G128400 chr2D 77460742 77461506 764 True 1031.000000 1031 90.909000 1 783 1 chr2D.!!$R1 782
13 TraesCS7D01G128400 chr2D 86183679 86184316 637 False 826.000000 826 89.732000 114 783 1 chr2D.!!$F1 669
14 TraesCS7D01G128400 chr2D 627624023 627624780 757 True 811.000000 811 86.228000 1 787 1 chr2D.!!$R2 786
15 TraesCS7D01G128400 chr2D 584757992 584759645 1653 False 480.000000 494 87.022000 1600 3126 3 chr2D.!!$F3 1526
16 TraesCS7D01G128400 chr2B 607250259 607251028 769 True 1003.000000 1003 90.162000 1 790 1 chr2B.!!$R1 789
17 TraesCS7D01G128400 chr2B 704763066 704766706 3640 False 440.666667 483 85.160000 1600 4311 3 chr2B.!!$F2 2711
18 TraesCS7D01G128400 chr4B 122271872 122272534 662 True 597.000000 597 83.803000 111 784 1 chr4B.!!$R1 673
19 TraesCS7D01G128400 chr4B 665300613 665302738 2125 True 507.500000 891 81.664000 1598 4302 2 chr4B.!!$R3 2704
20 TraesCS7D01G128400 chrUn 108618406 108620973 2567 False 716.333333 850 83.979667 1588 4311 3 chrUn.!!$F1 2723
21 TraesCS7D01G128400 chrUn 108745916 108747561 1645 False 642.500000 854 84.141000 1598 3148 2 chrUn.!!$F2 1550
22 TraesCS7D01G128400 chrUn 108751723 108754633 2910 True 529.666667 782 82.968000 1600 4354 3 chrUn.!!$R2 2754
23 TraesCS7D01G128400 chrUn 108799899 108800903 1004 True 456.500000 486 85.995500 1600 2526 2 chrUn.!!$R4 926
24 TraesCS7D01G128400 chrUn 108723090 108723833 743 True 449.000000 449 78.667000 1604 2306 1 chrUn.!!$R1 702
25 TraesCS7D01G128400 chrUn 108794180 108795770 1590 True 426.666667 497 84.602333 2737 4347 3 chrUn.!!$R3 1610
26 TraesCS7D01G128400 chr5A 704948104 704950927 2823 False 541.000000 817 83.793667 1600 4300 3 chr5A.!!$F1 2700
27 TraesCS7D01G128400 chr5A 704972810 704975624 2814 True 511.666667 824 82.475000 1598 4302 3 chr5A.!!$R1 2704
28 TraesCS7D01G128400 chr5A 705142838 705147056 4218 False 443.250000 488 85.096750 1600 4346 4 chr5A.!!$F2 2746
29 TraesCS7D01G128400 chr4A 624857202 624857861 659 True 821.000000 821 89.001000 101 784 1 chr4A.!!$R1 683
30 TraesCS7D01G128400 chr1A 569210285 569210945 660 False 793.000000 793 88.278000 101 784 1 chr1A.!!$F2 683
31 TraesCS7D01G128400 chr1A 541181473 541182215 742 False 684.000000 684 83.838000 19 783 1 chr1A.!!$F1 764
32 TraesCS7D01G128400 chr1A 579645873 579646391 518 True 512.000000 512 85.502000 1 504 1 chr1A.!!$R1 503
33 TraesCS7D01G128400 chr4D 380465118 380465703 585 True 673.000000 673 87.352000 4726 5318 1 chr4D.!!$R1 592
34 TraesCS7D01G128400 chr4D 499457500 499460596 3096 True 416.750000 754 84.895500 1326 4335 4 chr4D.!!$R2 3009
35 TraesCS7D01G128400 chr3B 586858141 586858734 593 False 665.000000 665 86.957000 4724 5318 1 chr3B.!!$F1 594
36 TraesCS7D01G128400 chr1D 3758612 3759199 587 False 654.000000 654 86.723000 4724 5317 1 chr1D.!!$F1 593
37 TraesCS7D01G128400 chr6B 678928072 678928651 579 True 647.000000 647 86.815000 4724 5306 1 chr6B.!!$R2 582
38 TraesCS7D01G128400 chr3A 629180127 629180648 521 False 560.000000 560 86.989000 1 504 1 chr3A.!!$F4 503
39 TraesCS7D01G128400 chr3A 574314728 574315349 621 False 534.000000 534 83.283000 167 788 1 chr3A.!!$F3 621
40 TraesCS7D01G128400 chr6A 585971267 585973848 2581 False 390.400000 477 84.537800 1775 4326 5 chr6A.!!$F2 2551

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
301 308 0.034089 GAGGTTTGGGGATGGACTGG 60.034 60.0 0.0 0.00 0.00 4.00 F
899 992 0.036010 ATCCCTGCTTGAACAGACGG 60.036 55.0 0.0 0.00 40.25 4.79 F
1072 1167 0.109412 ACACGGAATCGGACGACTTC 60.109 55.0 0.0 2.92 41.39 3.01 F
1073 1168 0.170561 CACGGAATCGGACGACTTCT 59.829 55.0 0.0 0.00 41.39 2.85 F
2843 7614 0.107703 GGGATCTGAATCACACCGCA 60.108 55.0 0.0 0.00 35.22 5.69 F
3255 8053 0.977395 AGGAGAAGAAGAACCACCGG 59.023 55.0 0.0 0.00 0.00 5.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1595 5290 0.398318 ACTTCCACAGGAACTCCAGC 59.602 55.000 0.00 0.00 36.71 4.85 R
2538 6478 0.512952 CTCGTGAACGCTTTCAAGGG 59.487 55.000 16.55 11.04 43.52 3.95 R
2843 7614 1.489560 CCTGAAGAACCGGGTTCCCT 61.490 60.000 31.05 21.01 42.85 4.20 R
2924 7695 1.751351 ACGATGATGATGACGACCACT 59.249 47.619 0.00 0.00 0.00 4.00 R
4305 10685 0.108138 AACGGCAGCAGGATGTAGAC 60.108 55.000 0.00 0.00 39.31 2.59 R
5065 11503 0.110238 CCAGAACAACAACCATCGCG 60.110 55.000 0.00 0.00 0.00 5.87 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 9.645059 CTTCAGTAGTAGAATTTTCAGATCACA 57.355 33.333 0.00 0.00 0.00 3.58
85 86 2.491693 CCCGGCAATTGCTTCTTCTTAA 59.508 45.455 28.42 0.00 41.70 1.85
299 306 1.455822 TTGAGGTTTGGGGATGGACT 58.544 50.000 0.00 0.00 0.00 3.85
300 307 0.698238 TGAGGTTTGGGGATGGACTG 59.302 55.000 0.00 0.00 0.00 3.51
301 308 0.034089 GAGGTTTGGGGATGGACTGG 60.034 60.000 0.00 0.00 0.00 4.00
302 309 0.477597 AGGTTTGGGGATGGACTGGA 60.478 55.000 0.00 0.00 0.00 3.86
303 310 0.631212 GGTTTGGGGATGGACTGGAT 59.369 55.000 0.00 0.00 0.00 3.41
304 311 1.410224 GGTTTGGGGATGGACTGGATC 60.410 57.143 0.00 0.00 0.00 3.36
305 312 1.284785 GTTTGGGGATGGACTGGATCA 59.715 52.381 0.00 0.00 0.00 2.92
306 313 0.918983 TTGGGGATGGACTGGATCAC 59.081 55.000 0.00 0.00 0.00 3.06
307 314 0.044702 TGGGGATGGACTGGATCACT 59.955 55.000 0.00 0.00 0.00 3.41
509 581 3.437795 GAGGGCGACGAAGGACGA 61.438 66.667 0.00 0.00 45.77 4.20
510 582 2.986306 GAGGGCGACGAAGGACGAA 61.986 63.158 0.00 0.00 45.77 3.85
541 618 2.807045 CGAGCAGTCGTGTGCCTC 60.807 66.667 7.93 5.17 45.20 4.70
795 888 0.335019 GGCCCTGGGTGGTATTTTCT 59.665 55.000 15.56 0.00 0.00 2.52
808 901 5.863935 GTGGTATTTTCTGGCAATTTGACTC 59.136 40.000 3.47 0.00 0.00 3.36
815 908 1.508088 GCAATTTGACTCGGCAGGG 59.492 57.895 0.00 0.00 0.00 4.45
816 909 1.937546 GCAATTTGACTCGGCAGGGG 61.938 60.000 0.00 0.00 0.00 4.79
840 933 5.930837 TCCTTTTGGACAACAGTTTTGAT 57.069 34.783 0.00 0.00 45.19 2.57
869 962 0.323633 CCACCACAAGGATGATGCCA 60.324 55.000 0.00 0.00 38.69 4.92
881 974 3.085208 GATGCCACCATCACGACAT 57.915 52.632 0.00 0.00 45.75 3.06
885 978 1.907739 CCACCATCACGACATCCCT 59.092 57.895 0.00 0.00 0.00 4.20
898 991 1.081892 CATCCCTGCTTGAACAGACG 58.918 55.000 0.00 0.00 40.25 4.18
899 992 0.036010 ATCCCTGCTTGAACAGACGG 60.036 55.000 0.00 0.00 40.25 4.79
901 994 1.071471 CCTGCTTGAACAGACGGGT 59.929 57.895 0.00 0.00 40.25 5.28
903 996 1.308998 CTGCTTGAACAGACGGGTTT 58.691 50.000 0.00 0.00 40.25 3.27
905 998 0.591659 GCTTGAACAGACGGGTTTCC 59.408 55.000 0.00 0.00 0.00 3.13
925 1018 3.201045 TCCAAATCCATCACCGACCATAA 59.799 43.478 0.00 0.00 0.00 1.90
929 1022 3.536956 TCCATCACCGACCATAAAGAC 57.463 47.619 0.00 0.00 0.00 3.01
934 1027 2.117137 CACCGACCATAAAGACGATCG 58.883 52.381 14.88 14.88 0.00 3.69
954 1047 1.676678 CCTCGCCGGAGAAGAATCCA 61.677 60.000 9.83 0.00 43.27 3.41
969 1062 8.641498 AGAAGAATCCAAAGCTTCTTTATTCA 57.359 30.769 18.31 0.00 44.22 2.57
975 1068 5.126061 TCCAAAGCTTCTTTATTCAGCATCC 59.874 40.000 0.00 0.00 35.88 3.51
984 1078 0.249489 ATTCAGCATCCCGTCGCTAC 60.249 55.000 0.00 0.00 36.50 3.58
994 1088 1.650536 CGTCGCTACCGTCGATGTC 60.651 63.158 3.52 0.00 46.12 3.06
1003 1097 2.939782 CGTCGATGTCGGACGATTT 58.060 52.632 16.53 0.00 41.59 2.17
1007 1101 3.301379 CGTCGATGTCGGACGATTTAAAA 59.699 43.478 16.53 0.00 41.59 1.52
1029 1124 7.803487 AAAAACTAAGCTACTAGGGACCTAA 57.197 36.000 0.00 0.00 0.00 2.69
1039 1134 5.432680 ACTAGGGACCTAAAACCTAAAGC 57.567 43.478 0.00 0.00 36.49 3.51
1040 1135 5.099378 ACTAGGGACCTAAAACCTAAAGCT 58.901 41.667 0.00 0.00 36.49 3.74
1046 1141 6.348786 GGGACCTAAAACCTAAAGCTAAAACG 60.349 42.308 0.00 0.00 0.00 3.60
1049 1144 7.813645 ACCTAAAACCTAAAGCTAAAACGATG 58.186 34.615 0.00 0.00 0.00 3.84
1050 1145 7.662669 ACCTAAAACCTAAAGCTAAAACGATGA 59.337 33.333 0.00 0.00 0.00 2.92
1058 1153 1.201921 GCTAAAACGATGAGCACACGG 60.202 52.381 9.83 0.00 36.20 4.94
1059 1154 2.333926 CTAAAACGATGAGCACACGGA 58.666 47.619 9.83 0.00 0.00 4.69
1060 1155 1.588674 AAAACGATGAGCACACGGAA 58.411 45.000 9.83 0.00 0.00 4.30
1061 1156 1.808411 AAACGATGAGCACACGGAAT 58.192 45.000 9.83 0.00 0.00 3.01
1062 1157 1.359848 AACGATGAGCACACGGAATC 58.640 50.000 9.83 0.00 0.00 2.52
1063 1158 0.802222 ACGATGAGCACACGGAATCG 60.802 55.000 3.10 3.10 44.26 3.34
1064 1159 1.482621 CGATGAGCACACGGAATCGG 61.483 60.000 0.00 0.00 41.39 4.18
1065 1160 0.179111 GATGAGCACACGGAATCGGA 60.179 55.000 0.00 0.00 41.39 4.55
1066 1161 0.460284 ATGAGCACACGGAATCGGAC 60.460 55.000 0.00 0.00 41.39 4.79
1068 1163 2.126228 GCACACGGAATCGGACGA 60.126 61.111 0.00 0.00 41.39 4.20
1069 1164 2.442188 GCACACGGAATCGGACGAC 61.442 63.158 0.00 0.00 41.39 4.34
1070 1165 1.211969 CACACGGAATCGGACGACT 59.788 57.895 0.00 0.00 41.39 4.18
1071 1166 0.388134 CACACGGAATCGGACGACTT 60.388 55.000 0.00 0.00 41.39 3.01
1072 1167 0.109412 ACACGGAATCGGACGACTTC 60.109 55.000 0.00 2.92 41.39 3.01
1073 1168 0.170561 CACGGAATCGGACGACTTCT 59.829 55.000 0.00 0.00 41.39 2.85
1074 1169 0.170561 ACGGAATCGGACGACTTCTG 59.829 55.000 16.65 16.65 41.39 3.02
1083 1180 0.663568 GACGACTTCTGTCACCACCG 60.664 60.000 0.00 0.00 43.06 4.94
1089 1186 0.320374 TTCTGTCACCACCGATGACC 59.680 55.000 2.87 0.00 44.91 4.02
1144 4062 3.134127 GCCTCTTTTGGCGGCGAT 61.134 61.111 12.98 0.00 43.74 4.58
1290 4771 1.674441 CATGGAGCATTGCGTGAAGAT 59.326 47.619 2.38 0.00 33.87 2.40
1512 5206 1.270199 ACATGCTGCTCCGATCAGATC 60.270 52.381 3.36 0.00 33.54 2.75
1523 5217 1.485838 GATCAGATCGTGCACAGCCG 61.486 60.000 18.64 2.38 0.00 5.52
1540 5235 2.632996 AGCCGGTGCAGTATACATACAT 59.367 45.455 1.90 0.00 41.13 2.29
1595 5290 1.743252 GGAGGAACGGCAGCAAGAG 60.743 63.158 0.00 0.00 0.00 2.85
1905 5651 1.012086 CATCATGTTCCTGCTGGACG 58.988 55.000 12.53 1.76 43.06 4.79
1946 5692 4.148825 GGCCTCATCGTGCTCCGT 62.149 66.667 0.00 0.00 37.94 4.69
1947 5693 2.887568 GCCTCATCGTGCTCCGTG 60.888 66.667 0.00 0.00 37.94 4.94
2093 5962 0.242825 TCCGCGTCGAAAGATTCTGT 59.757 50.000 4.92 0.00 45.19 3.41
2094 5963 0.640768 CCGCGTCGAAAGATTCTGTC 59.359 55.000 4.92 0.00 45.19 3.51
2097 5966 1.978542 CGTCGAAAGATTCTGTCGGT 58.021 50.000 22.73 0.00 41.12 4.69
2098 5967 1.912110 CGTCGAAAGATTCTGTCGGTC 59.088 52.381 22.73 15.76 41.12 4.79
2102 5971 0.391263 AAAGATTCTGTCGGTCGGCC 60.391 55.000 0.00 0.00 0.00 6.13
2226 6122 2.269241 CGGGAGGTTTCTGGAGCC 59.731 66.667 0.00 0.00 0.00 4.70
2412 6343 1.651132 GTGCTGTTTGTGTGCGTCG 60.651 57.895 0.00 0.00 0.00 5.12
2414 6345 0.806492 TGCTGTTTGTGTGCGTCGTA 60.806 50.000 0.00 0.00 0.00 3.43
2447 6378 2.503061 CTCATGGCTGCCTACGCT 59.497 61.111 21.03 0.00 35.36 5.07
2489 6420 1.299316 CACCACCGTGTACGTCGTT 60.299 57.895 1.78 0.00 37.74 3.85
2538 6478 4.947147 TGCTGGTGCCGGTGTTCC 62.947 66.667 1.90 1.14 38.71 3.62
2544 6484 3.172106 TGCCGGTGTTCCCCTTGA 61.172 61.111 1.90 0.00 0.00 3.02
2616 6589 3.386768 ACGTAATCAAGCTCACACACT 57.613 42.857 0.00 0.00 0.00 3.55
2617 6590 3.728845 ACGTAATCAAGCTCACACACTT 58.271 40.909 0.00 0.00 0.00 3.16
2618 6591 3.494626 ACGTAATCAAGCTCACACACTTG 59.505 43.478 0.00 0.00 43.73 3.16
2680 6881 4.411256 ACTTGGACGTAAAGTGAAGGAA 57.589 40.909 13.71 0.00 36.52 3.36
2681 6882 4.124970 ACTTGGACGTAAAGTGAAGGAAC 58.875 43.478 13.71 0.00 36.52 3.62
2682 6883 3.823281 TGGACGTAAAGTGAAGGAACA 57.177 42.857 0.00 0.00 0.00 3.18
2683 6884 3.724374 TGGACGTAAAGTGAAGGAACAG 58.276 45.455 0.00 0.00 0.00 3.16
2684 6885 2.479275 GGACGTAAAGTGAAGGAACAGC 59.521 50.000 0.00 0.00 0.00 4.40
2733 7099 0.676151 GGAAGACAAGCTGGAGCAGG 60.676 60.000 0.00 0.00 45.16 4.85
2756 7122 2.024319 GTCGCTCGTTCTGCTGCTT 61.024 57.895 0.00 0.00 0.00 3.91
2762 7128 2.256591 CGTTCTGCTGCTTGCCACT 61.257 57.895 0.00 0.00 42.00 4.00
2843 7614 0.107703 GGGATCTGAATCACACCGCA 60.108 55.000 0.00 0.00 35.22 5.69
2967 7738 2.745492 GCAAGAAGCTGAGCGCCT 60.745 61.111 2.29 0.00 41.15 5.52
3023 7806 2.671070 CTGTTCGGCCTCATGGGT 59.329 61.111 0.00 0.00 37.43 4.51
3173 7971 1.311651 TACGGTGGGTGCGTCGAATA 61.312 55.000 0.00 0.00 0.00 1.75
3244 8042 1.978580 GGACCCAAGTCAAGGAGAAGA 59.021 52.381 0.00 0.00 45.48 2.87
3255 8053 0.977395 AGGAGAAGAAGAACCACCGG 59.023 55.000 0.00 0.00 0.00 5.28
3335 9538 4.005650 TCGAGAGGAAGCGTAAGTTCTTA 58.994 43.478 0.00 0.00 41.68 2.10
3761 10024 2.293399 GGAGTTCCACCATTTGTCACAC 59.707 50.000 0.00 0.00 35.64 3.82
3763 10026 3.360867 AGTTCCACCATTTGTCACACAA 58.639 40.909 0.00 0.00 36.11 3.33
3764 10027 3.130340 AGTTCCACCATTTGTCACACAAC 59.870 43.478 0.00 0.00 37.90 3.32
3765 10028 1.673400 TCCACCATTTGTCACACAACG 59.327 47.619 0.00 0.00 37.90 4.10
3766 10029 1.673400 CCACCATTTGTCACACAACGA 59.327 47.619 0.00 0.00 37.90 3.85
3801 10070 1.447489 CTGAAGAGGCTGCACGAGG 60.447 63.158 0.50 0.00 0.00 4.63
3804 10073 2.570582 GAAGAGGCTGCACGAGGAGG 62.571 65.000 0.50 0.00 33.18 4.30
3865 10206 1.058695 GCGTCAACAAGAACGATACCG 59.941 52.381 0.00 0.00 42.50 4.02
3974 10315 2.579787 GATGACACCGCGTCCTCG 60.580 66.667 4.92 0.00 44.71 4.63
4057 10419 3.041940 GCTCGACACCAACCCACG 61.042 66.667 0.00 0.00 0.00 4.94
4206 10586 1.377725 GTCATGGTGCTGGACCTGG 60.378 63.158 19.43 11.13 46.32 4.45
4305 10685 2.100631 GTGGTCGCCTTCATCACCG 61.101 63.158 0.00 0.00 0.00 4.94
4320 10700 0.807667 CACCGTCTACATCCTGCTGC 60.808 60.000 0.00 0.00 0.00 5.25
4326 10707 0.811616 CTACATCCTGCTGCCGTTCC 60.812 60.000 0.00 0.00 0.00 3.62
4338 10719 4.147322 CGTTCCACATCGTGCCGC 62.147 66.667 0.00 0.00 31.34 6.53
4381 10792 1.293498 CGGTGACTCACTTGGGAGG 59.707 63.158 9.08 0.00 39.27 4.30
4384 10795 1.420138 GGTGACTCACTTGGGAGGAAA 59.580 52.381 9.08 0.00 39.27 3.13
4390 10801 2.821969 CTCACTTGGGAGGAAACAATGG 59.178 50.000 0.00 0.00 0.00 3.16
4405 10820 5.830000 AACAATGGTGATGTGATGATCAG 57.170 39.130 0.09 0.00 32.92 2.90
4406 10821 3.630769 ACAATGGTGATGTGATGATCAGC 59.369 43.478 3.40 3.40 46.56 4.26
4410 10825 2.219458 GTGATGTGATGATCAGCCAGG 58.781 52.381 8.78 0.00 32.92 4.45
4417 10832 2.747460 GATCAGCCAGGCGCAACA 60.747 61.111 10.83 0.00 41.38 3.33
4421 10836 2.358737 AGCCAGGCGCAACAGTAC 60.359 61.111 10.83 0.00 41.38 2.73
4423 10838 2.031919 CCAGGCGCAACAGTACCA 59.968 61.111 10.83 0.00 0.00 3.25
4430 10845 0.249699 CGCAACAGTACCAGTCACCA 60.250 55.000 0.00 0.00 0.00 4.17
4431 10846 1.512926 GCAACAGTACCAGTCACCAG 58.487 55.000 0.00 0.00 0.00 4.00
4432 10847 1.512926 CAACAGTACCAGTCACCAGC 58.487 55.000 0.00 0.00 0.00 4.85
4433 10848 1.128200 AACAGTACCAGTCACCAGCA 58.872 50.000 0.00 0.00 0.00 4.41
4434 10849 1.128200 ACAGTACCAGTCACCAGCAA 58.872 50.000 0.00 0.00 0.00 3.91
4435 10850 1.699634 ACAGTACCAGTCACCAGCAAT 59.300 47.619 0.00 0.00 0.00 3.56
4436 10851 2.079158 CAGTACCAGTCACCAGCAATG 58.921 52.381 0.00 0.00 0.00 2.82
4437 10852 1.977854 AGTACCAGTCACCAGCAATGA 59.022 47.619 0.00 0.00 0.00 2.57
4438 10853 2.573462 AGTACCAGTCACCAGCAATGAT 59.427 45.455 0.00 0.00 0.00 2.45
4439 10854 3.774766 AGTACCAGTCACCAGCAATGATA 59.225 43.478 0.00 0.00 0.00 2.15
4440 10855 3.939740 ACCAGTCACCAGCAATGATAT 57.060 42.857 0.00 0.00 0.00 1.63
4441 10856 3.548770 ACCAGTCACCAGCAATGATATG 58.451 45.455 0.00 0.00 0.00 1.78
4442 10857 3.200605 ACCAGTCACCAGCAATGATATGA 59.799 43.478 0.00 0.00 0.00 2.15
4443 10858 4.141321 ACCAGTCACCAGCAATGATATGAT 60.141 41.667 0.00 0.00 0.00 2.45
4444 10859 4.454847 CCAGTCACCAGCAATGATATGATC 59.545 45.833 0.00 0.00 0.00 2.92
4445 10860 5.061179 CAGTCACCAGCAATGATATGATCA 58.939 41.667 0.00 0.00 44.55 2.92
4446 10861 5.179555 CAGTCACCAGCAATGATATGATCAG 59.820 44.000 0.09 0.00 43.53 2.90
4447 10862 4.070009 TCACCAGCAATGATATGATCAGC 58.930 43.478 0.09 0.00 43.53 4.26
4448 10863 3.818773 CACCAGCAATGATATGATCAGCA 59.181 43.478 0.09 0.00 43.53 4.41
4449 10864 3.819337 ACCAGCAATGATATGATCAGCAC 59.181 43.478 0.09 0.00 43.53 4.40
4450 10865 3.190744 CCAGCAATGATATGATCAGCACC 59.809 47.826 0.09 0.00 43.53 5.01
4451 10866 3.190744 CAGCAATGATATGATCAGCACCC 59.809 47.826 0.09 0.00 43.53 4.61
4452 10867 2.161012 GCAATGATATGATCAGCACCCG 59.839 50.000 0.09 0.00 43.53 5.28
4453 10868 3.405831 CAATGATATGATCAGCACCCGT 58.594 45.455 0.09 0.00 43.53 5.28
4454 10869 2.531522 TGATATGATCAGCACCCGTG 57.468 50.000 0.09 0.00 33.59 4.94
4464 10879 4.248842 CACCCGTGCCAGTCACCA 62.249 66.667 0.00 0.00 42.69 4.17
4472 10887 0.105964 TGCCAGTCACCAGTGTGTAC 59.894 55.000 0.00 0.00 43.26 2.90
4480 10895 6.460781 CAGTCACCAGTGTGTACCTAATTAA 58.539 40.000 0.00 0.00 43.26 1.40
4481 10896 6.932400 CAGTCACCAGTGTGTACCTAATTAAA 59.068 38.462 0.00 0.00 43.26 1.52
4483 10898 8.818860 AGTCACCAGTGTGTACCTAATTAAATA 58.181 33.333 0.00 0.00 43.26 1.40
4484 10899 9.095065 GTCACCAGTGTGTACCTAATTAAATAG 57.905 37.037 0.00 0.00 43.26 1.73
4485 10900 8.818860 TCACCAGTGTGTACCTAATTAAATAGT 58.181 33.333 0.00 0.00 43.26 2.12
4486 10901 9.444600 CACCAGTGTGTACCTAATTAAATAGTT 57.555 33.333 0.00 0.00 37.72 2.24
4508 10923 5.412526 TCTACTTGTTTACGTTGCTTTGG 57.587 39.130 0.00 0.00 0.00 3.28
4516 10931 4.569761 TTACGTTGCTTTGGTTTGCATA 57.430 36.364 0.00 0.00 39.07 3.14
4520 10935 4.447389 ACGTTGCTTTGGTTTGCATATTTC 59.553 37.500 0.00 0.00 39.07 2.17
4521 10936 4.685628 CGTTGCTTTGGTTTGCATATTTCT 59.314 37.500 0.00 0.00 39.07 2.52
4522 10937 5.177327 CGTTGCTTTGGTTTGCATATTTCTT 59.823 36.000 0.00 0.00 39.07 2.52
4523 10938 6.593072 GTTGCTTTGGTTTGCATATTTCTTC 58.407 36.000 0.00 0.00 39.07 2.87
4524 10939 6.100404 TGCTTTGGTTTGCATATTTCTTCT 57.900 33.333 0.00 0.00 33.94 2.85
4525 10940 6.523840 TGCTTTGGTTTGCATATTTCTTCTT 58.476 32.000 0.00 0.00 33.94 2.52
4526 10941 6.646240 TGCTTTGGTTTGCATATTTCTTCTTC 59.354 34.615 0.00 0.00 33.94 2.87
4527 10942 6.870439 GCTTTGGTTTGCATATTTCTTCTTCT 59.130 34.615 0.00 0.00 0.00 2.85
4528 10943 7.386025 GCTTTGGTTTGCATATTTCTTCTTCTT 59.614 33.333 0.00 0.00 0.00 2.52
4585 11021 3.314913 GGGAAATTTGTGCCTGTTTTTGG 59.685 43.478 0.00 0.00 0.00 3.28
4588 11024 5.448496 GGAAATTTGTGCCTGTTTTTGGTTC 60.448 40.000 0.00 0.00 0.00 3.62
4595 11031 3.380004 TGCCTGTTTTTGGTTCTACACTG 59.620 43.478 0.00 0.00 0.00 3.66
4597 11033 4.497507 GCCTGTTTTTGGTTCTACACTGTC 60.498 45.833 0.00 0.00 0.00 3.51
4599 11035 5.357032 CCTGTTTTTGGTTCTACACTGTCTT 59.643 40.000 0.00 0.00 0.00 3.01
4612 11048 1.486310 ACTGTCTTTCTGTGTGCTCCA 59.514 47.619 0.00 0.00 0.00 3.86
4614 11050 2.483106 CTGTCTTTCTGTGTGCTCCATG 59.517 50.000 0.00 0.00 0.00 3.66
4615 11051 2.158769 TGTCTTTCTGTGTGCTCCATGT 60.159 45.455 0.00 0.00 0.00 3.21
4616 11052 2.225019 GTCTTTCTGTGTGCTCCATGTG 59.775 50.000 0.00 0.00 0.00 3.21
4617 11053 2.158769 TCTTTCTGTGTGCTCCATGTGT 60.159 45.455 0.00 0.00 0.00 3.72
4618 11054 3.070878 TCTTTCTGTGTGCTCCATGTGTA 59.929 43.478 0.00 0.00 0.00 2.90
4619 11055 2.455674 TCTGTGTGCTCCATGTGTAC 57.544 50.000 0.00 0.00 0.00 2.90
4624 11060 1.270785 TGTGCTCCATGTGTACTGTGG 60.271 52.381 0.00 0.00 0.00 4.17
4655 11091 8.462589 AAATTATGTTTGATTTGGTTTGGCTT 57.537 26.923 0.00 0.00 0.00 4.35
4656 11092 8.462589 AATTATGTTTGATTTGGTTTGGCTTT 57.537 26.923 0.00 0.00 0.00 3.51
4661 11097 8.964476 TGTTTGATTTGGTTTGGCTTTTATAA 57.036 26.923 0.00 0.00 0.00 0.98
4670 11106 8.288689 TGGTTTGGCTTTTATAAGAACTATCC 57.711 34.615 0.00 0.00 32.92 2.59
4672 11108 7.066645 GGTTTGGCTTTTATAAGAACTATCCGT 59.933 37.037 0.00 0.00 32.92 4.69
4675 11111 9.669887 TTGGCTTTTATAAGAACTATCCGTAAA 57.330 29.630 0.00 0.00 32.92 2.01
4711 11149 9.868277 TTCAATTCAGTTGTTCAATTGTTTAGT 57.132 25.926 5.13 0.00 38.26 2.24
4712 11150 9.868277 TCAATTCAGTTGTTCAATTGTTTAGTT 57.132 25.926 5.13 0.00 38.26 2.24
4713 11151 9.904647 CAATTCAGTTGTTCAATTGTTTAGTTG 57.095 29.630 5.13 0.05 34.25 3.16
4714 11152 8.647143 ATTCAGTTGTTCAATTGTTTAGTTGG 57.353 30.769 5.13 0.00 0.00 3.77
4715 11153 7.397892 TCAGTTGTTCAATTGTTTAGTTGGA 57.602 32.000 5.13 0.00 0.00 3.53
4716 11154 7.479980 TCAGTTGTTCAATTGTTTAGTTGGAG 58.520 34.615 5.13 0.00 0.00 3.86
4717 11155 6.697019 CAGTTGTTCAATTGTTTAGTTGGAGG 59.303 38.462 5.13 0.00 0.00 4.30
4718 11156 5.782893 TGTTCAATTGTTTAGTTGGAGGG 57.217 39.130 5.13 0.00 0.00 4.30
4719 11157 5.205056 TGTTCAATTGTTTAGTTGGAGGGT 58.795 37.500 5.13 0.00 0.00 4.34
4720 11158 5.068460 TGTTCAATTGTTTAGTTGGAGGGTG 59.932 40.000 5.13 0.00 0.00 4.61
4721 11159 4.798882 TCAATTGTTTAGTTGGAGGGTGT 58.201 39.130 5.13 0.00 0.00 4.16
4722 11160 5.205056 TCAATTGTTTAGTTGGAGGGTGTT 58.795 37.500 5.13 0.00 0.00 3.32
4787 11225 1.229076 GGTTAATCCCGGCCCATGT 59.771 57.895 0.00 0.00 0.00 3.21
4789 11227 1.147376 TTAATCCCGGCCCATGTCG 59.853 57.895 0.00 0.00 39.93 4.35
4871 11309 2.107141 GGAAGACGAGATGGCGGG 59.893 66.667 0.00 0.00 35.12 6.13
4883 11321 2.043953 GGCGGGGGCTTTCTGAAT 60.044 61.111 0.00 0.00 0.00 2.57
4907 11345 0.546598 AATAAGGTTCTCCCCGCCTG 59.453 55.000 0.00 0.00 32.16 4.85
4976 11414 0.608640 GTGTCTCCGGTGGATCTGTT 59.391 55.000 0.00 0.00 0.00 3.16
5003 11441 2.027285 TGGATTTGCTCGGATCTTGTCA 60.027 45.455 0.00 0.00 0.00 3.58
5011 11449 3.799420 GCTCGGATCTTGTCATAGTTCAC 59.201 47.826 0.00 0.00 0.00 3.18
5057 11495 3.764434 GGATCCTTCCGATCTATGCTACA 59.236 47.826 3.84 0.00 45.90 2.74
5065 11503 4.051922 CCGATCTATGCTACACTTCAACC 58.948 47.826 0.00 0.00 0.00 3.77
5133 11571 1.542492 TGACTTCCCGACTGTCTACC 58.458 55.000 6.21 0.00 0.00 3.18
5156 11594 4.678743 AAGGTTTGCCCGGCTCCC 62.679 66.667 11.61 7.67 38.74 4.30
5354 11794 4.826274 TTTTTGGGTTTCCACACAATGA 57.174 36.364 0.00 0.00 46.04 2.57
5355 11795 4.826274 TTTTGGGTTTCCACACAATGAA 57.174 36.364 0.00 0.00 46.04 2.57
5356 11796 4.399004 TTTGGGTTTCCACACAATGAAG 57.601 40.909 0.00 0.00 46.04 3.02
5357 11797 2.315176 TGGGTTTCCACACAATGAAGG 58.685 47.619 0.00 0.00 38.32 3.46
5358 11798 2.091610 TGGGTTTCCACACAATGAAGGA 60.092 45.455 0.00 0.00 38.32 3.36
5359 11799 3.165071 GGGTTTCCACACAATGAAGGAT 58.835 45.455 0.00 0.00 0.00 3.24
5360 11800 4.202620 TGGGTTTCCACACAATGAAGGATA 60.203 41.667 0.00 0.00 38.32 2.59
5361 11801 4.770010 GGGTTTCCACACAATGAAGGATAA 59.230 41.667 0.00 0.00 0.00 1.75
5362 11802 5.245075 GGGTTTCCACACAATGAAGGATAAA 59.755 40.000 0.00 0.00 0.00 1.40
5363 11803 6.239458 GGGTTTCCACACAATGAAGGATAAAA 60.239 38.462 0.00 0.00 0.00 1.52
5364 11804 7.213678 GGTTTCCACACAATGAAGGATAAAAA 58.786 34.615 0.00 0.00 0.00 1.94
5383 11823 3.942130 AAAACCACCTCAAGCAATAGC 57.058 42.857 0.00 0.00 42.56 2.97
5400 11840 7.835634 GCAATAGCTTTCTAGTAAAGTCACT 57.164 36.000 0.00 7.17 37.91 3.41
5401 11841 7.680062 GCAATAGCTTTCTAGTAAAGTCACTG 58.320 38.462 0.00 8.86 37.91 3.66
5402 11842 7.545965 GCAATAGCTTTCTAGTAAAGTCACTGA 59.454 37.037 0.00 0.00 37.91 3.41
5403 11843 9.593134 CAATAGCTTTCTAGTAAAGTCACTGAT 57.407 33.333 0.00 0.00 0.00 2.90
5406 11846 8.910351 AGCTTTCTAGTAAAGTCACTGATTTT 57.090 30.769 12.98 5.04 0.00 1.82
5407 11847 9.343539 AGCTTTCTAGTAAAGTCACTGATTTTT 57.656 29.630 4.98 1.85 0.00 1.94
5435 11875 9.981460 ATAAGAAAAGACACCAAAAGGATATCT 57.019 29.630 2.05 0.00 0.00 1.98
5436 11876 8.712228 AAGAAAAGACACCAAAAGGATATCTT 57.288 30.769 2.05 0.00 37.28 2.40
5437 11877 8.712228 AGAAAAGACACCAAAAGGATATCTTT 57.288 30.769 2.05 0.00 46.82 2.52
5465 11905 7.750229 TGCAAGATCAATAGATGGTTATTCC 57.250 36.000 0.00 0.00 33.72 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
68 69 7.274250 CCATGTTACTTAAGAAGAAGCAATTGC 59.726 37.037 23.05 23.05 42.49 3.56
85 86 3.545703 GACATTAGCCTGCCATGTTACT 58.454 45.455 6.13 0.00 31.10 2.24
173 176 8.768397 TCATTCTATGTAACATGTCTAGGGTTT 58.232 33.333 0.00 0.00 0.00 3.27
262 269 8.463930 AACCTCAATTTGACAATTTCAGTAGA 57.536 30.769 0.00 0.00 34.94 2.59
263 270 8.971321 CAAACCTCAATTTGACAATTTCAGTAG 58.029 33.333 0.00 0.00 41.28 2.57
264 271 7.925483 CCAAACCTCAATTTGACAATTTCAGTA 59.075 33.333 0.00 0.00 41.28 2.74
265 272 6.762661 CCAAACCTCAATTTGACAATTTCAGT 59.237 34.615 0.00 0.00 41.28 3.41
266 273 6.203338 CCCAAACCTCAATTTGACAATTTCAG 59.797 38.462 0.00 0.00 41.28 3.02
267 274 6.054295 CCCAAACCTCAATTTGACAATTTCA 58.946 36.000 0.00 0.00 41.28 2.69
268 275 5.469760 CCCCAAACCTCAATTTGACAATTTC 59.530 40.000 0.00 0.00 41.28 2.17
299 306 2.684630 GCATCCATGTTCCAGTGATCCA 60.685 50.000 0.00 0.00 0.00 3.41
300 307 1.952296 GCATCCATGTTCCAGTGATCC 59.048 52.381 0.00 0.00 0.00 3.36
301 308 1.600957 CGCATCCATGTTCCAGTGATC 59.399 52.381 0.00 0.00 0.00 2.92
302 309 1.065199 ACGCATCCATGTTCCAGTGAT 60.065 47.619 0.00 0.00 0.00 3.06
303 310 0.324614 ACGCATCCATGTTCCAGTGA 59.675 50.000 0.00 0.00 0.00 3.41
304 311 1.665679 GTACGCATCCATGTTCCAGTG 59.334 52.381 0.00 0.00 0.00 3.66
305 312 1.555075 AGTACGCATCCATGTTCCAGT 59.445 47.619 0.00 0.00 0.00 4.00
306 313 2.315925 AGTACGCATCCATGTTCCAG 57.684 50.000 0.00 0.00 0.00 3.86
307 314 2.236146 AGAAGTACGCATCCATGTTCCA 59.764 45.455 0.00 0.00 0.00 3.53
504 576 2.420642 GTTTCCTTGGTAGGTTCGTCC 58.579 52.381 0.00 0.00 42.60 4.79
505 577 2.064014 CGTTTCCTTGGTAGGTTCGTC 58.936 52.381 0.00 0.00 42.60 4.20
506 578 1.688197 TCGTTTCCTTGGTAGGTTCGT 59.312 47.619 0.00 0.00 42.60 3.85
507 579 2.334838 CTCGTTTCCTTGGTAGGTTCG 58.665 52.381 0.00 0.00 42.60 3.95
508 580 2.074576 GCTCGTTTCCTTGGTAGGTTC 58.925 52.381 0.00 0.00 42.60 3.62
509 581 1.418637 TGCTCGTTTCCTTGGTAGGTT 59.581 47.619 0.00 0.00 42.60 3.50
510 582 1.002087 CTGCTCGTTTCCTTGGTAGGT 59.998 52.381 0.00 0.00 42.60 3.08
789 882 3.614870 GCCGAGTCAAATTGCCAGAAAAT 60.615 43.478 0.00 0.00 0.00 1.82
795 888 1.243342 CCTGCCGAGTCAAATTGCCA 61.243 55.000 0.00 0.00 0.00 4.92
808 901 2.676471 CAAAAGGACCCCCTGCCG 60.676 66.667 0.00 0.00 43.48 5.69
815 908 2.067365 ACTGTTGTCCAAAAGGACCC 57.933 50.000 11.79 3.81 38.04 4.46
816 909 4.081917 TCAAAACTGTTGTCCAAAAGGACC 60.082 41.667 11.79 0.00 38.04 4.46
829 922 4.644234 TGGACATGTGTCATCAAAACTGTT 59.356 37.500 1.15 0.00 46.47 3.16
830 923 4.036734 GTGGACATGTGTCATCAAAACTGT 59.963 41.667 1.15 0.00 46.47 3.55
832 925 3.569701 GGTGGACATGTGTCATCAAAACT 59.430 43.478 1.15 0.00 46.47 2.66
834 927 3.317711 GTGGTGGACATGTGTCATCAAAA 59.682 43.478 1.15 0.00 46.47 2.44
835 928 2.884012 GTGGTGGACATGTGTCATCAAA 59.116 45.455 1.15 0.00 46.47 2.69
836 929 2.158696 TGTGGTGGACATGTGTCATCAA 60.159 45.455 1.15 0.00 46.47 2.57
837 930 1.419387 TGTGGTGGACATGTGTCATCA 59.581 47.619 1.15 5.29 46.47 3.07
838 931 2.183478 TGTGGTGGACATGTGTCATC 57.817 50.000 1.15 2.30 46.47 2.92
839 932 2.507484 CTTGTGGTGGACATGTGTCAT 58.493 47.619 1.15 0.00 46.47 3.06
840 933 1.476652 CCTTGTGGTGGACATGTGTCA 60.477 52.381 1.15 0.00 46.47 3.58
869 962 1.221840 GCAGGGATGTCGTGATGGT 59.778 57.895 0.00 0.00 33.39 3.55
879 972 1.081892 CGTCTGTTCAAGCAGGGATG 58.918 55.000 0.00 0.00 37.12 3.51
881 974 1.371183 CCGTCTGTTCAAGCAGGGA 59.629 57.895 0.00 0.00 37.12 4.20
885 978 1.305201 GAAACCCGTCTGTTCAAGCA 58.695 50.000 0.00 0.00 0.00 3.91
898 991 1.476488 CGGTGATGGATTTGGAAACCC 59.524 52.381 0.00 0.00 0.00 4.11
899 992 2.163613 GTCGGTGATGGATTTGGAAACC 59.836 50.000 0.00 0.00 0.00 3.27
901 994 2.224892 TGGTCGGTGATGGATTTGGAAA 60.225 45.455 0.00 0.00 0.00 3.13
903 996 0.988063 TGGTCGGTGATGGATTTGGA 59.012 50.000 0.00 0.00 0.00 3.53
905 998 4.881273 TCTTTATGGTCGGTGATGGATTTG 59.119 41.667 0.00 0.00 0.00 2.32
934 1027 1.592939 GATTCTTCTCCGGCGAGGC 60.593 63.158 9.30 0.00 40.77 4.70
954 1047 4.096984 CGGGATGCTGAATAAAGAAGCTTT 59.903 41.667 0.00 0.00 37.82 3.51
962 1055 1.134521 AGCGACGGGATGCTGAATAAA 60.135 47.619 0.00 0.00 40.62 1.40
969 1062 3.900892 CGGTAGCGACGGGATGCT 61.901 66.667 9.07 0.00 45.04 3.79
975 1068 2.352001 CATCGACGGTAGCGACGG 60.352 66.667 31.38 17.31 40.94 4.79
1007 1101 7.310921 GGTTTTAGGTCCCTAGTAGCTTAGTTT 60.311 40.741 0.00 0.00 0.00 2.66
1024 1119 7.662669 TCATCGTTTTAGCTTTAGGTTTTAGGT 59.337 33.333 0.00 0.00 0.00 3.08
1029 1124 5.472137 TGCTCATCGTTTTAGCTTTAGGTTT 59.528 36.000 0.00 0.00 37.16 3.27
1039 1134 2.333926 TCCGTGTGCTCATCGTTTTAG 58.666 47.619 0.00 0.00 0.00 1.85
1040 1135 2.442212 TCCGTGTGCTCATCGTTTTA 57.558 45.000 0.00 0.00 0.00 1.52
1046 1141 0.179111 TCCGATTCCGTGTGCTCATC 60.179 55.000 0.00 0.00 0.00 2.92
1049 1144 2.158959 CGTCCGATTCCGTGTGCTC 61.159 63.158 0.00 0.00 0.00 4.26
1050 1145 2.126071 CGTCCGATTCCGTGTGCT 60.126 61.111 0.00 0.00 0.00 4.40
1068 1163 1.000955 GTCATCGGTGGTGACAGAAGT 59.999 52.381 5.37 0.00 44.13 3.01
1069 1164 1.673033 GGTCATCGGTGGTGACAGAAG 60.673 57.143 11.88 0.00 45.99 2.85
1070 1165 0.320374 GGTCATCGGTGGTGACAGAA 59.680 55.000 11.88 0.00 45.99 3.02
1071 1166 0.830023 TGGTCATCGGTGGTGACAGA 60.830 55.000 11.88 0.00 45.99 3.41
1072 1167 0.034756 TTGGTCATCGGTGGTGACAG 59.965 55.000 11.88 0.00 45.99 3.51
1073 1168 0.034756 CTTGGTCATCGGTGGTGACA 59.965 55.000 11.88 0.00 45.99 3.58
1074 1169 0.320374 TCTTGGTCATCGGTGGTGAC 59.680 55.000 0.00 1.57 44.01 3.67
1089 1186 2.032528 TCTGCCGGCAACCTCTTG 59.967 61.111 32.09 17.12 0.00 3.02
1115 1212 3.569200 AAGAGGCAACCCTTCCGGC 62.569 63.158 0.00 0.00 43.12 6.13
1129 4047 2.793946 CCATCGCCGCCAAAAGAG 59.206 61.111 0.00 0.00 0.00 2.85
1133 4051 2.513666 CTAGCCATCGCCGCCAAA 60.514 61.111 0.00 0.00 34.57 3.28
1139 4057 2.111251 GGAACCCTAGCCATCGCC 59.889 66.667 0.00 0.00 34.57 5.54
1144 4062 1.987855 CGACCAGGAACCCTAGCCA 60.988 63.158 0.00 0.00 29.64 4.75
1171 4652 1.590932 AGCGATATTTGCTGCCTCAG 58.409 50.000 0.00 0.00 42.14 3.35
1197 4678 2.725203 CTTTGGTCCCCGCGAAGTCA 62.725 60.000 8.23 0.00 0.00 3.41
1290 4771 4.718940 TCACTGCTCAATGAGTATTCGA 57.281 40.909 12.29 1.74 31.39 3.71
1540 5235 2.550277 TCTAGGCTGGGAAGACATCA 57.450 50.000 0.00 0.00 0.00 3.07
1595 5290 0.398318 ACTTCCACAGGAACTCCAGC 59.602 55.000 0.00 0.00 36.71 4.85
1905 5651 2.709475 GTTGTCGATGATGCGCCC 59.291 61.111 4.18 0.00 0.00 6.13
1947 5693 3.558411 GTCGAGCAGCATGGCGAC 61.558 66.667 12.24 12.24 44.83 5.19
2050 5796 3.426117 ATGGCGACGTAGGCGAAGG 62.426 63.158 16.91 0.00 42.00 3.46
2102 5971 2.364317 TCCTTCTCCTCTGCCGGG 60.364 66.667 2.18 0.00 0.00 5.73
2108 5980 1.006813 TGAGGCTCTCCTTCTCCTCT 58.993 55.000 16.72 0.00 44.46 3.69
2115 6008 1.734655 TTGAGGTTGAGGCTCTCCTT 58.265 50.000 24.41 9.93 44.46 3.36
2392 6323 3.018428 CGCACACAAACAGCACGC 61.018 61.111 0.00 0.00 0.00 5.34
2412 6343 2.124942 GCCCAGCAGCTCCACTAC 60.125 66.667 0.00 0.00 0.00 2.73
2447 6378 4.478371 CATCTGCAGCTCCCGGCA 62.478 66.667 9.47 0.00 44.79 5.69
2538 6478 0.512952 CTCGTGAACGCTTTCAAGGG 59.487 55.000 16.55 11.04 43.52 3.95
2544 6484 1.626654 CGGCATCTCGTGAACGCTTT 61.627 55.000 10.76 0.00 39.60 3.51
2575 6521 9.970395 TTACGTACATGATTCGAGGTATTTTAT 57.030 29.630 0.00 0.00 0.00 1.40
2584 6530 5.687730 AGCTTGATTACGTACATGATTCGAG 59.312 40.000 0.00 0.00 0.00 4.04
2586 6532 5.458779 TGAGCTTGATTACGTACATGATTCG 59.541 40.000 0.00 3.53 0.00 3.34
2588 6534 6.036083 GTGTGAGCTTGATTACGTACATGATT 59.964 38.462 0.00 0.00 0.00 2.57
2616 6589 7.779798 ACTAATTATGGAAATGAAGCTAGCCAA 59.220 33.333 12.13 0.00 0.00 4.52
2617 6590 7.290061 ACTAATTATGGAAATGAAGCTAGCCA 58.710 34.615 12.13 3.23 0.00 4.75
2618 6591 7.751768 ACTAATTATGGAAATGAAGCTAGCC 57.248 36.000 12.13 0.00 0.00 3.93
2677 6878 2.811317 CTGTCCTCGCGCTGTTCC 60.811 66.667 5.56 0.00 0.00 3.62
2678 6879 2.049063 ACTGTCCTCGCGCTGTTC 60.049 61.111 5.56 0.00 0.00 3.18
2679 6880 2.049063 GACTGTCCTCGCGCTGTT 60.049 61.111 5.56 0.00 0.00 3.16
2680 6881 4.406173 CGACTGTCCTCGCGCTGT 62.406 66.667 5.56 0.00 0.00 4.40
2681 6882 4.103103 TCGACTGTCCTCGCGCTG 62.103 66.667 5.56 0.00 33.47 5.18
2682 6883 4.104417 GTCGACTGTCCTCGCGCT 62.104 66.667 8.70 0.00 33.47 5.92
2683 6884 3.685214 ATGTCGACTGTCCTCGCGC 62.685 63.158 17.92 0.00 33.47 6.86
2684 6885 1.583967 GATGTCGACTGTCCTCGCG 60.584 63.158 17.92 0.00 33.47 5.87
2843 7614 1.489560 CCTGAAGAACCGGGTTCCCT 61.490 60.000 31.05 21.01 42.85 4.20
2858 7629 2.756400 GTGGGGTGCATGTCCTGA 59.244 61.111 0.00 0.00 0.00 3.86
2924 7695 1.751351 ACGATGATGATGACGACCACT 59.249 47.619 0.00 0.00 0.00 4.00
3167 7965 6.236558 TGTACAACATTACCCCATATTCGA 57.763 37.500 0.00 0.00 0.00 3.71
3173 7971 3.013921 CGCTTGTACAACATTACCCCAT 58.986 45.455 3.59 0.00 0.00 4.00
3227 8025 4.068599 GTTCTTCTTCTCCTTGACTTGGG 58.931 47.826 0.00 0.00 0.00 4.12
3232 8030 3.403968 GGTGGTTCTTCTTCTCCTTGAC 58.596 50.000 0.00 0.00 0.00 3.18
3233 8031 2.037251 CGGTGGTTCTTCTTCTCCTTGA 59.963 50.000 0.00 0.00 0.00 3.02
3244 8042 1.528309 CCTTGTGCCGGTGGTTCTT 60.528 57.895 1.90 0.00 0.00 2.52
3255 8053 2.480555 CGGCGAATGACCTTGTGC 59.519 61.111 0.00 0.00 0.00 4.57
3282 9449 0.102481 TCAATACGCTTCCTCTCGGC 59.898 55.000 0.00 0.00 0.00 5.54
3703 9915 1.107114 GATCTGCAGGACGAGGAAGA 58.893 55.000 15.13 0.00 0.00 2.87
3745 9957 1.673400 CGTTGTGTGACAAATGGTGGA 59.327 47.619 0.00 0.00 40.15 4.02
3761 10024 0.673644 ACTCCGGAAGCCATTCGTTG 60.674 55.000 5.23 0.00 36.19 4.10
3763 10026 1.079127 CACTCCGGAAGCCATTCGT 60.079 57.895 5.23 0.00 36.19 3.85
3764 10027 2.464459 GCACTCCGGAAGCCATTCG 61.464 63.158 15.78 0.00 36.19 3.34
3765 10028 3.502572 GCACTCCGGAAGCCATTC 58.497 61.111 15.78 0.00 34.46 2.67
3837 10127 0.463654 TCTTGTTGACGCCAGTTGCT 60.464 50.000 0.00 0.00 38.05 3.91
3865 10206 3.984193 ATCAGGGACTTGCGCAGGC 62.984 63.158 20.58 11.80 34.60 4.85
4057 10419 0.108281 GAAGAAGGCCTGGTACCGTC 60.108 60.000 5.69 0.00 36.10 4.79
4305 10685 0.108138 AACGGCAGCAGGATGTAGAC 60.108 55.000 0.00 0.00 39.31 2.59
4359 10740 1.301716 CCAAGTGAGTCACCGGGTG 60.302 63.158 21.27 21.27 34.49 4.61
4360 10741 2.516888 CCCAAGTGAGTCACCGGGT 61.517 63.158 28.87 8.29 40.58 5.28
4361 10742 2.172483 CTCCCAAGTGAGTCACCGGG 62.172 65.000 30.37 30.37 44.33 5.73
4362 10743 1.293498 CTCCCAAGTGAGTCACCGG 59.707 63.158 19.71 18.99 34.49 5.28
4363 10744 1.185618 TCCTCCCAAGTGAGTCACCG 61.186 60.000 19.71 11.14 34.49 4.94
4365 10746 2.158813 TGTTTCCTCCCAAGTGAGTCAC 60.159 50.000 15.78 15.78 34.10 3.67
4369 10780 2.821969 CCATTGTTTCCTCCCAAGTGAG 59.178 50.000 0.00 0.00 0.00 3.51
4371 10782 2.297033 CACCATTGTTTCCTCCCAAGTG 59.703 50.000 0.00 0.00 0.00 3.16
4372 10783 2.176798 TCACCATTGTTTCCTCCCAAGT 59.823 45.455 0.00 0.00 0.00 3.16
4381 10792 6.198650 TGATCATCACATCACCATTGTTTC 57.801 37.500 0.00 0.00 0.00 2.78
4384 10795 3.630769 GCTGATCATCACATCACCATTGT 59.369 43.478 0.00 0.00 0.00 2.71
4390 10801 2.219458 CCTGGCTGATCATCACATCAC 58.781 52.381 0.00 0.00 0.00 3.06
4405 10820 3.431725 GGTACTGTTGCGCCTGGC 61.432 66.667 9.11 9.11 43.96 4.85
4406 10821 2.031919 TGGTACTGTTGCGCCTGG 59.968 61.111 4.18 0.00 0.00 4.45
4410 10825 1.566018 GGTGACTGGTACTGTTGCGC 61.566 60.000 0.00 0.00 41.64 6.09
4417 10832 1.977854 TCATTGCTGGTGACTGGTACT 59.022 47.619 0.00 0.00 0.00 2.73
4421 10836 3.812262 TCATATCATTGCTGGTGACTGG 58.188 45.455 0.00 0.00 0.00 4.00
4423 10838 5.300411 TGATCATATCATTGCTGGTGACT 57.700 39.130 0.00 0.00 33.59 3.41
4430 10845 3.418995 GGGTGCTGATCATATCATTGCT 58.581 45.455 0.00 0.00 38.85 3.91
4431 10846 2.161012 CGGGTGCTGATCATATCATTGC 59.839 50.000 0.00 0.00 38.85 3.56
4432 10847 3.187842 CACGGGTGCTGATCATATCATTG 59.812 47.826 0.00 0.00 38.85 2.82
4433 10848 3.405831 CACGGGTGCTGATCATATCATT 58.594 45.455 0.00 0.00 38.85 2.57
4434 10849 3.049708 CACGGGTGCTGATCATATCAT 57.950 47.619 0.00 0.00 38.85 2.45
4435 10850 2.531522 CACGGGTGCTGATCATATCA 57.468 50.000 0.00 0.00 37.76 2.15
4461 10876 9.662947 GAACTATTTAATTAGGTACACACTGGT 57.337 33.333 8.77 0.00 0.00 4.00
4462 10877 9.886132 AGAACTATTTAATTAGGTACACACTGG 57.114 33.333 8.77 0.00 0.00 4.00
4480 10895 7.958053 AGCAACGTAAACAAGTAGAACTATT 57.042 32.000 0.00 0.00 0.00 1.73
4481 10896 7.958053 AAGCAACGTAAACAAGTAGAACTAT 57.042 32.000 0.00 0.00 0.00 2.12
4483 10898 6.457799 CCAAAGCAACGTAAACAAGTAGAACT 60.458 38.462 0.00 0.00 0.00 3.01
4484 10899 5.679792 CCAAAGCAACGTAAACAAGTAGAAC 59.320 40.000 0.00 0.00 0.00 3.01
4485 10900 5.354792 ACCAAAGCAACGTAAACAAGTAGAA 59.645 36.000 0.00 0.00 0.00 2.10
4486 10901 4.877251 ACCAAAGCAACGTAAACAAGTAGA 59.123 37.500 0.00 0.00 0.00 2.59
4502 10917 6.870439 AGAAGAAGAAATATGCAAACCAAAGC 59.130 34.615 0.00 0.00 0.00 3.51
4516 10931 9.987726 AAGGGAATTATCAGAAGAAGAAGAAAT 57.012 29.630 0.00 0.00 0.00 2.17
4520 10935 8.977267 ATCAAGGGAATTATCAGAAGAAGAAG 57.023 34.615 0.00 0.00 0.00 2.85
4521 10936 9.759473 AAATCAAGGGAATTATCAGAAGAAGAA 57.241 29.630 0.00 0.00 0.00 2.52
4522 10937 9.182214 CAAATCAAGGGAATTATCAGAAGAAGA 57.818 33.333 0.00 0.00 0.00 2.87
4523 10938 7.919621 GCAAATCAAGGGAATTATCAGAAGAAG 59.080 37.037 0.00 0.00 0.00 2.85
4524 10939 7.396907 TGCAAATCAAGGGAATTATCAGAAGAA 59.603 33.333 0.00 0.00 0.00 2.52
4525 10940 6.891361 TGCAAATCAAGGGAATTATCAGAAGA 59.109 34.615 0.00 0.00 0.00 2.87
4526 10941 7.104043 TGCAAATCAAGGGAATTATCAGAAG 57.896 36.000 0.00 0.00 0.00 2.85
4527 10942 6.664816 ACTGCAAATCAAGGGAATTATCAGAA 59.335 34.615 0.00 0.00 0.00 3.02
4528 10943 6.095860 CACTGCAAATCAAGGGAATTATCAGA 59.904 38.462 0.00 0.00 0.00 3.27
4563 10999 3.314913 CCAAAAACAGGCACAAATTTCCC 59.685 43.478 0.00 0.00 0.00 3.97
4585 11021 4.025647 GCACACAGAAAGACAGTGTAGAAC 60.026 45.833 0.00 0.00 45.07 3.01
4588 11024 3.722147 AGCACACAGAAAGACAGTGTAG 58.278 45.455 0.00 0.00 45.07 2.74
4595 11031 2.225019 CACATGGAGCACACAGAAAGAC 59.775 50.000 0.00 0.00 0.00 3.01
4597 11033 2.224606 ACACATGGAGCACACAGAAAG 58.775 47.619 0.00 0.00 0.00 2.62
4599 11035 2.368548 AGTACACATGGAGCACACAGAA 59.631 45.455 0.00 0.00 0.00 3.02
4610 11046 9.778741 ATAATTTATAGACCACAGTACACATGG 57.221 33.333 8.16 8.16 39.57 3.66
4711 11149 4.323477 CGGCGGAACACCCTCCAA 62.323 66.667 0.00 0.00 39.88 3.53
4772 11210 2.813726 CCGACATGGGCCGGGATTA 61.814 63.158 2.18 0.00 41.89 1.75
4773 11211 4.189580 CCGACATGGGCCGGGATT 62.190 66.667 2.18 0.00 41.89 3.01
4784 11222 3.075005 CCTCCCGACCACCGACAT 61.075 66.667 0.00 0.00 41.76 3.06
4871 11309 6.071320 ACCTTATTCCATATTCAGAAAGCCC 58.929 40.000 0.00 0.00 0.00 5.19
4883 11321 2.370849 GCGGGGAGAACCTTATTCCATA 59.629 50.000 0.00 0.00 40.03 2.74
4943 11381 0.691078 AGACACACCTCCACACACCT 60.691 55.000 0.00 0.00 0.00 4.00
4976 11414 3.136443 AGATCCGAGCAAATCCACCAATA 59.864 43.478 0.00 0.00 0.00 1.90
5003 11441 3.254166 ACACACGAACGTAGGTGAACTAT 59.746 43.478 21.45 0.71 37.58 2.12
5011 11449 2.316792 CTGAAGACACACGAACGTAGG 58.683 52.381 0.00 0.00 0.00 3.18
5065 11503 0.110238 CCAGAACAACAACCATCGCG 60.110 55.000 0.00 0.00 0.00 5.87
5133 11571 1.067250 CCGGGCAAACCTTGTTGTG 59.933 57.895 0.00 0.00 36.97 3.33
5190 11629 1.613925 ACTACAAGCACTGAAGCGAGA 59.386 47.619 0.00 0.00 40.15 4.04
5269 11708 8.915057 ATCTATTCATCTTCAAACATGGTAGG 57.085 34.615 0.00 0.00 0.00 3.18
5333 11773 4.826274 TCATTGTGTGGAAACCCAAAAA 57.174 36.364 0.00 0.00 35.07 1.94
5334 11774 4.383552 CCTTCATTGTGTGGAAACCCAAAA 60.384 41.667 0.00 0.00 35.07 2.44
5335 11775 3.133721 CCTTCATTGTGTGGAAACCCAAA 59.866 43.478 0.00 0.00 35.07 3.28
5336 11776 2.697751 CCTTCATTGTGTGGAAACCCAA 59.302 45.455 0.00 0.00 35.07 4.12
5337 11777 2.091610 TCCTTCATTGTGTGGAAACCCA 60.092 45.455 0.00 0.00 0.00 4.51
5338 11778 2.593026 TCCTTCATTGTGTGGAAACCC 58.407 47.619 0.00 0.00 0.00 4.11
5339 11779 5.975693 TTATCCTTCATTGTGTGGAAACC 57.024 39.130 0.00 0.00 31.87 3.27
5362 11802 4.257267 GCTATTGCTTGAGGTGGTTTTT 57.743 40.909 0.00 0.00 36.03 1.94
5363 11803 3.942130 GCTATTGCTTGAGGTGGTTTT 57.058 42.857 0.00 0.00 36.03 2.43
5376 11816 7.545965 TCAGTGACTTTACTAGAAAGCTATTGC 59.454 37.037 0.00 0.00 40.05 3.56
5377 11817 8.988064 TCAGTGACTTTACTAGAAAGCTATTG 57.012 34.615 0.00 3.28 0.00 1.90
5380 11820 9.998106 AAAATCAGTGACTTTACTAGAAAGCTA 57.002 29.630 0.00 0.00 0.00 3.32
5381 11821 8.910351 AAAATCAGTGACTTTACTAGAAAGCT 57.090 30.769 0.00 0.00 0.00 3.74
5409 11849 9.981460 AGATATCCTTTTGGTGTCTTTTCTTAT 57.019 29.630 0.00 0.00 41.38 1.73
5410 11850 9.807921 AAGATATCCTTTTGGTGTCTTTTCTTA 57.192 29.630 0.00 0.00 41.38 2.10
5411 11851 8.712228 AAGATATCCTTTTGGTGTCTTTTCTT 57.288 30.769 0.00 0.00 41.38 2.52
5412 11852 8.712228 AAAGATATCCTTTTGGTGTCTTTTCT 57.288 30.769 0.00 0.00 42.13 2.52
5439 11879 8.632679 GGAATAACCATCTATTGATCTTGCAAA 58.367 33.333 0.00 0.00 38.79 3.68
5440 11880 7.779326 TGGAATAACCATCTATTGATCTTGCAA 59.221 33.333 0.00 0.00 44.64 4.08
5441 11881 7.289310 TGGAATAACCATCTATTGATCTTGCA 58.711 34.615 0.00 0.00 44.64 4.08
5442 11882 7.750229 TGGAATAACCATCTATTGATCTTGC 57.250 36.000 0.00 0.00 44.64 4.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.