Multiple sequence alignment - TraesCS7D01G125500

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G125500 chr7D 100.000 3555 0 0 1 3555 78496379 78499933 0.000000e+00 6565
1 TraesCS7D01G125500 chr4B 92.971 2063 100 20 1532 3555 594868832 594870888 0.000000e+00 2964
2 TraesCS7D01G125500 chr4B 92.102 747 29 12 736 1477 594867969 594868690 0.000000e+00 1026
3 TraesCS7D01G125500 chr4B 94.404 554 17 5 1 552 594867237 594867778 0.000000e+00 839
4 TraesCS7D01G125500 chr4B 94.643 112 5 1 637 747 594867804 594867915 4.720000e-39 172
5 TraesCS7D01G125500 chr4A 89.181 2089 141 39 1532 3555 679270505 679272573 0.000000e+00 2527
6 TraesCS7D01G125500 chr4A 92.593 864 36 10 666 1526 679269620 679270458 0.000000e+00 1216
7 TraesCS7D01G125500 chr4A 85.947 676 77 13 1 667 679268912 679269578 0.000000e+00 706
8 TraesCS7D01G125500 chr4D 92.256 1627 96 13 1532 3140 472511838 472513452 0.000000e+00 2279
9 TraesCS7D01G125500 chr4D 91.540 591 23 14 1 566 472501420 472502008 0.000000e+00 789
10 TraesCS7D01G125500 chr4D 95.041 363 10 5 933 1293 472511389 472511745 6.660000e-157 564
11 TraesCS7D01G125500 chr4D 89.286 280 15 7 666 931 472502395 472502673 1.580000e-88 337
12 TraesCS7D01G125500 chr4D 78.761 452 44 31 3138 3553 472517365 472517800 4.550000e-64 255
13 TraesCS7D01G125500 chr2D 86.221 479 39 13 1048 1526 284553776 284553325 8.870000e-136 494
14 TraesCS7D01G125500 chr6D 85.316 395 28 12 1659 2036 467086400 467086019 7.200000e-102 381
15 TraesCS7D01G125500 chr6D 96.610 59 2 0 2415 2473 467085993 467085935 8.120000e-17 99
16 TraesCS7D01G125500 chr6B 79.277 415 43 21 2313 2712 712263937 712263551 2.120000e-62 250


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G125500 chr7D 78496379 78499933 3554 False 6565.000000 6565 100.000000 1 3555 1 chr7D.!!$F1 3554
1 TraesCS7D01G125500 chr4B 594867237 594870888 3651 False 1250.250000 2964 93.530000 1 3555 4 chr4B.!!$F1 3554
2 TraesCS7D01G125500 chr4A 679268912 679272573 3661 False 1483.000000 2527 89.240333 1 3555 3 chr4A.!!$F1 3554
3 TraesCS7D01G125500 chr4D 472511389 472517800 6411 False 1032.666667 2279 88.686000 933 3553 3 chr4D.!!$F2 2620
4 TraesCS7D01G125500 chr4D 472501420 472502673 1253 False 563.000000 789 90.413000 1 931 2 chr4D.!!$F1 930

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
797 1230 1.461127 CGCAACGGGAGAAGAAGAAAG 59.539 52.381 0.0 0.0 0.0 2.62 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2774 3324 0.035317 AGGTTCAGCTGCATTCGACA 59.965 50.0 9.47 0.0 0.0 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
376 414 5.524511 TCGTGAAACCATGAAGTTTATCG 57.475 39.130 0.00 6.02 40.01 2.92
617 814 7.658167 TGTGATACACCGAAATGTTTCTAGAAA 59.342 33.333 13.99 13.99 33.27 2.52
797 1230 1.461127 CGCAACGGGAGAAGAAGAAAG 59.539 52.381 0.00 0.00 0.00 2.62
1108 1548 3.834726 CCTTCACCGGCAACAACA 58.165 55.556 0.00 0.00 0.00 3.33
1221 1662 2.391389 CCTTCGCTTCTCCCGTTGC 61.391 63.158 0.00 0.00 0.00 4.17
1285 1726 3.267860 CTCGCTCGCTTCCATGGC 61.268 66.667 6.96 0.00 0.00 4.40
1319 1760 0.933796 GCTGCATTCTACGCCTCTTC 59.066 55.000 0.00 0.00 0.00 2.87
1360 1801 1.791204 CTGTCAATCGATGATGCCTCG 59.209 52.381 0.00 0.00 40.97 4.63
1361 1802 1.136891 TGTCAATCGATGATGCCTCGT 59.863 47.619 0.00 0.00 40.97 4.18
1362 1803 2.205074 GTCAATCGATGATGCCTCGTT 58.795 47.619 0.00 0.00 40.97 3.85
1363 1804 2.033407 GTCAATCGATGATGCCTCGTTG 60.033 50.000 0.00 0.00 40.97 4.10
1364 1805 0.940126 AATCGATGATGCCTCGTTGC 59.060 50.000 0.00 0.00 37.40 4.17
1365 1806 0.179076 ATCGATGATGCCTCGTTGCA 60.179 50.000 0.00 4.23 46.94 4.08
1366 1807 0.807275 TCGATGATGCCTCGTTGCAG 60.807 55.000 7.59 0.00 45.93 4.41
1367 1808 0.807275 CGATGATGCCTCGTTGCAGA 60.807 55.000 7.59 0.00 45.93 4.26
1423 1867 3.521126 AGCAAGTATGAGGACAGGTTCAT 59.479 43.478 0.00 0.00 37.73 2.57
1429 1873 4.908601 ATGAGGACAGGTTCATGTAACA 57.091 40.909 9.31 0.00 40.08 2.41
1430 1874 4.698201 TGAGGACAGGTTCATGTAACAA 57.302 40.909 9.31 0.00 40.08 2.83
1442 1886 1.327303 TGTAACAAAGCCCAAGCCTG 58.673 50.000 0.00 0.00 41.25 4.85
1444 1888 1.960689 GTAACAAAGCCCAAGCCTGAA 59.039 47.619 0.00 0.00 41.25 3.02
1477 1921 6.460261 CGAGCCCTCTTTTTCTTCTTTTTCTT 60.460 38.462 0.00 0.00 0.00 2.52
1478 1922 7.187824 AGCCCTCTTTTTCTTCTTTTTCTTT 57.812 32.000 0.00 0.00 0.00 2.52
1492 1936 5.469084 TCTTTTTCTTTTCTTCCTAGCCGTC 59.531 40.000 0.00 0.00 0.00 4.79
1508 1952 1.811217 CGTCCAGCGATGTATGCACG 61.811 60.000 0.00 0.00 44.77 5.34
1526 1970 3.250280 GCACGAGAGGAGTCATTCGTATA 59.750 47.826 13.19 0.00 43.63 1.47
1527 1971 4.611807 GCACGAGAGGAGTCATTCGTATAG 60.612 50.000 13.19 5.57 43.63 1.31
1528 1972 4.512198 CACGAGAGGAGTCATTCGTATAGT 59.488 45.833 13.19 0.00 43.63 2.12
1530 1974 4.512198 CGAGAGGAGTCATTCGTATAGTGT 59.488 45.833 0.00 0.00 0.00 3.55
1558 2105 0.179156 CTTATTTGTGCAGCCGCCAG 60.179 55.000 0.00 0.00 37.32 4.85
1590 2137 2.618045 CCAAACTGTAATCGAAGCCCCT 60.618 50.000 0.00 0.00 0.00 4.79
1602 2149 0.539669 AAGCCCCTCTTTTGAACCCG 60.540 55.000 0.00 0.00 0.00 5.28
1603 2150 1.977009 GCCCCTCTTTTGAACCCGG 60.977 63.158 0.00 0.00 0.00 5.73
1792 2339 3.382865 CAGAGGATGACGATTCAGAGGAA 59.617 47.826 0.00 0.00 34.35 3.36
1876 2423 4.241555 GACATCGCCTGGCCGGAT 62.242 66.667 15.09 8.20 33.16 4.18
1918 2465 1.005512 CACCGTCGACCATGACCAA 60.006 57.895 10.58 0.00 35.40 3.67
2155 2702 2.711922 GGAGAGGAAGAAGGCGCGA 61.712 63.158 12.10 0.00 0.00 5.87
2263 2810 1.078567 GTGGAGGAAGCAGAGGCAG 60.079 63.158 0.00 0.00 44.61 4.85
2395 2945 1.003839 TGGTGGTCTTGCTAAGCGG 60.004 57.895 0.00 0.00 0.00 5.52
2558 3108 7.939039 ACAAGAAGAGGAAGATGTTTTGATACA 59.061 33.333 0.00 0.00 0.00 2.29
2592 3142 0.108585 TGTCCCTGCTTCCTTGTGAC 59.891 55.000 0.00 0.00 0.00 3.67
2593 3143 0.108585 GTCCCTGCTTCCTTGTGACA 59.891 55.000 0.00 0.00 0.00 3.58
2634 3184 4.665833 ATGTTATTCCGCTGCAGTACTA 57.334 40.909 16.64 0.00 0.00 1.82
2635 3185 3.777478 TGTTATTCCGCTGCAGTACTAC 58.223 45.455 16.64 5.65 0.00 2.73
2636 3186 3.446161 TGTTATTCCGCTGCAGTACTACT 59.554 43.478 16.64 0.00 0.00 2.57
2637 3187 2.873133 ATTCCGCTGCAGTACTACTC 57.127 50.000 16.64 0.00 0.00 2.59
2662 3212 9.049523 TCTATCACTAGATGCAAAAATTAGCTG 57.950 33.333 0.00 0.00 35.67 4.24
2665 3215 6.830324 TCACTAGATGCAAAAATTAGCTGGAT 59.170 34.615 0.00 0.00 0.00 3.41
2688 3238 2.060383 GGAATTTGGGGAGGCAGCC 61.060 63.158 1.84 1.84 0.00 4.85
2701 3251 1.391157 GGCAGCCCAAACACAAGACA 61.391 55.000 0.00 0.00 0.00 3.41
2735 3285 4.153835 GCTGTGCTATTCTCCATAAGATGC 59.846 45.833 0.00 0.00 32.82 3.91
2740 3290 3.845781 ATTCTCCATAAGATGCGGTGT 57.154 42.857 0.00 0.00 32.82 4.16
2742 3292 2.388735 TCTCCATAAGATGCGGTGTCT 58.611 47.619 0.00 0.00 0.00 3.41
2755 3305 3.067461 TGCGGTGTCTTTTGCATTTAACT 59.933 39.130 0.00 0.00 31.31 2.24
2774 3324 2.771372 ACTTGTGATTGCCCTTTTGGTT 59.229 40.909 0.00 0.00 38.10 3.67
2777 3327 2.102252 TGTGATTGCCCTTTTGGTTGTC 59.898 45.455 0.00 0.00 38.10 3.18
2786 3336 2.053627 CTTTTGGTTGTCGAATGCAGC 58.946 47.619 0.00 0.00 0.00 5.25
2791 3341 1.400242 GGTTGTCGAATGCAGCTGAAC 60.400 52.381 20.43 9.97 0.00 3.18
2795 3346 2.289382 TGTCGAATGCAGCTGAACCTTA 60.289 45.455 20.43 0.00 0.00 2.69
2800 3351 4.210120 CGAATGCAGCTGAACCTTACTATC 59.790 45.833 20.43 0.00 0.00 2.08
2835 3397 7.328277 TGTCAAACATTACAGTTTACAGCTT 57.672 32.000 0.00 0.00 39.55 3.74
2838 3400 7.798982 GTCAAACATTACAGTTTACAGCTTCTC 59.201 37.037 0.00 0.00 39.55 2.87
2858 3420 4.074970 CTCTGTATGCCTTCCTGTTGTTT 58.925 43.478 0.00 0.00 0.00 2.83
2859 3421 3.820467 TCTGTATGCCTTCCTGTTGTTTG 59.180 43.478 0.00 0.00 0.00 2.93
2865 3427 4.020543 TGCCTTCCTGTTGTTTGTACTTT 58.979 39.130 0.00 0.00 0.00 2.66
2891 3453 2.745281 TGGAGCGTTTTATTGTACCAGC 59.255 45.455 0.00 0.00 0.00 4.85
2892 3454 2.096980 GGAGCGTTTTATTGTACCAGCC 59.903 50.000 0.00 0.00 0.00 4.85
2895 3457 2.731027 GCGTTTTATTGTACCAGCCTGC 60.731 50.000 0.00 0.00 0.00 4.85
2927 3491 6.053650 AGTGAAAGGAGTAACACTTGGTAAC 58.946 40.000 0.00 0.00 40.03 2.50
2929 3493 7.070322 AGTGAAAGGAGTAACACTTGGTAACTA 59.930 37.037 0.00 0.00 40.03 2.24
2971 3535 6.819397 AGCCTTGGTTTCTTAAGTTATGTC 57.181 37.500 1.63 0.00 0.00 3.06
2972 3536 6.543735 AGCCTTGGTTTCTTAAGTTATGTCT 58.456 36.000 1.63 0.00 0.00 3.41
2974 3538 7.505923 AGCCTTGGTTTCTTAAGTTATGTCTTT 59.494 33.333 1.63 0.00 0.00 2.52
2976 3540 9.067986 CCTTGGTTTCTTAAGTTATGTCTTTCT 57.932 33.333 1.63 0.00 0.00 2.52
2977 3541 9.884465 CTTGGTTTCTTAAGTTATGTCTTTCTG 57.116 33.333 1.63 0.00 0.00 3.02
3011 3576 1.095600 TAGCTACAGACCTCAGTGCG 58.904 55.000 0.00 0.00 0.00 5.34
3020 3597 0.667487 ACCTCAGTGCGTCACATTCG 60.667 55.000 11.58 0.00 36.74 3.34
3028 3605 1.078759 GCGTCACATTCGTCCTCCTG 61.079 60.000 0.00 0.00 0.00 3.86
3037 3614 1.739562 CGTCCTCCTGTTCTGCTGC 60.740 63.158 0.00 0.00 0.00 5.25
3179 7675 3.355378 TGCTGATTTGGATCGTTGGAAT 58.645 40.909 0.00 0.00 34.91 3.01
3375 7885 6.515272 ACTTACAATGCCAGTATTTTCCAG 57.485 37.500 0.00 0.00 0.00 3.86
3438 7948 1.834263 GCTGGTACTTCTCCATGGAGT 59.166 52.381 35.34 22.84 42.49 3.85
3536 8076 0.678048 GATGTTGGGCCAGAGGACAC 60.678 60.000 10.80 3.89 27.52 3.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
797 1230 1.535896 GGTGCTTTCTCGGGAGTTTTC 59.464 52.381 0.00 0.00 0.00 2.29
1072 1512 0.812412 GCTCCGCCGCACCTTATTTA 60.812 55.000 0.00 0.00 0.00 1.40
1073 1513 2.112815 GCTCCGCCGCACCTTATTT 61.113 57.895 0.00 0.00 0.00 1.40
1074 1514 2.513897 GCTCCGCCGCACCTTATT 60.514 61.111 0.00 0.00 0.00 1.40
1075 1515 4.547367 GGCTCCGCCGCACCTTAT 62.547 66.667 0.00 0.00 39.62 1.73
1319 1760 1.578583 AGTTGTCCAGGAACGAAACG 58.421 50.000 0.00 0.00 0.00 3.60
1373 1814 5.447279 GCATCATTCGTTAATTGACCGAACT 60.447 40.000 9.76 0.69 42.59 3.01
1408 1852 4.908601 TGTTACATGAACCTGTCCTCAT 57.091 40.909 0.00 0.00 37.22 2.90
1409 1853 4.698201 TTGTTACATGAACCTGTCCTCA 57.302 40.909 0.00 0.00 37.22 3.86
1410 1854 4.083271 GCTTTGTTACATGAACCTGTCCTC 60.083 45.833 0.00 0.00 37.22 3.71
1423 1867 1.133637 TCAGGCTTGGGCTTTGTTACA 60.134 47.619 0.00 0.00 35.88 2.41
1429 1873 1.466851 GCTGTTCAGGCTTGGGCTTT 61.467 55.000 0.00 0.00 35.88 3.51
1430 1874 1.905354 GCTGTTCAGGCTTGGGCTT 60.905 57.895 0.00 0.00 35.88 4.35
1442 1886 3.991536 GAGGGCTCGGTCGCTGTTC 62.992 68.421 0.00 0.00 0.00 3.18
1477 1921 0.249398 GCTGGACGGCTAGGAAGAAA 59.751 55.000 2.91 0.00 0.00 2.52
1478 1922 1.898154 GCTGGACGGCTAGGAAGAA 59.102 57.895 2.91 0.00 0.00 2.52
1492 1936 0.249031 TCTCGTGCATACATCGCTGG 60.249 55.000 0.00 0.00 0.00 4.85
1508 1952 6.073112 GGTACACTATACGAATGACTCCTCTC 60.073 46.154 0.00 0.00 0.00 3.20
1526 1970 0.251073 AAATAAGGCGGCGGTACACT 59.749 50.000 9.78 0.00 0.00 3.55
1527 1971 0.375803 CAAATAAGGCGGCGGTACAC 59.624 55.000 9.78 0.00 0.00 2.90
1528 1972 0.036199 ACAAATAAGGCGGCGGTACA 60.036 50.000 9.78 0.00 0.00 2.90
1530 1974 1.370587 GCACAAATAAGGCGGCGGTA 61.371 55.000 9.78 0.00 0.00 4.02
1577 2124 3.992943 TCAAAAGAGGGGCTTCGATTA 57.007 42.857 0.00 0.00 35.24 1.75
1590 2137 1.110518 GCAACCCCGGGTTCAAAAGA 61.111 55.000 19.77 0.00 43.05 2.52
1603 2150 3.799755 GATGTGACGGCGCAACCC 61.800 66.667 9.43 0.00 38.16 4.11
1616 2163 6.207417 CCATATAAGAAAATTCCAGCGGATGT 59.793 38.462 0.00 0.00 0.00 3.06
1780 2327 3.311871 CCTGCAATTCTTCCTCTGAATCG 59.688 47.826 0.00 0.00 33.54 3.34
1876 2423 3.346315 CTTGTGCATCCAGTCCACATTA 58.654 45.455 0.00 0.00 39.03 1.90
1918 2465 0.041238 TCACATCGACCTTCTCCCCT 59.959 55.000 0.00 0.00 0.00 4.79
2155 2702 1.370609 TCGATCGCTTCTTCGACTCT 58.629 50.000 11.09 0.00 41.62 3.24
2263 2810 0.904649 CCTTGGAAAATCCCCCTTGC 59.095 55.000 0.00 0.00 35.03 4.01
2395 2945 5.417894 CCTATGGTTCTTTCCTTGTTTACCC 59.582 44.000 0.00 0.00 0.00 3.69
2558 3108 3.322254 CAGGGACAGACTCTTACAACACT 59.678 47.826 0.00 0.00 0.00 3.55
2634 3184 9.050601 GCTAATTTTTGCATCTAGTGATAGAGT 57.949 33.333 0.00 0.00 0.00 3.24
2635 3185 9.270640 AGCTAATTTTTGCATCTAGTGATAGAG 57.729 33.333 0.00 0.00 0.00 2.43
2636 3186 9.049523 CAGCTAATTTTTGCATCTAGTGATAGA 57.950 33.333 0.00 0.00 0.00 1.98
2637 3187 8.288208 CCAGCTAATTTTTGCATCTAGTGATAG 58.712 37.037 0.00 0.00 0.00 2.08
2655 3205 5.776716 CCCAAATTCCATACATCCAGCTAAT 59.223 40.000 0.00 0.00 0.00 1.73
2662 3212 3.500343 CCTCCCCAAATTCCATACATCC 58.500 50.000 0.00 0.00 0.00 3.51
2665 3215 1.643286 TGCCTCCCCAAATTCCATACA 59.357 47.619 0.00 0.00 0.00 2.29
2688 3238 8.299570 AGCTAAAGATAAATGTCTTGTGTTTGG 58.700 33.333 0.00 0.00 38.41 3.28
2701 3251 8.213679 TGGAGAATAGCACAGCTAAAGATAAAT 58.786 33.333 2.52 0.00 44.62 1.40
2735 3285 5.040635 ACAAGTTAAATGCAAAAGACACCG 58.959 37.500 0.00 0.00 0.00 4.94
2740 3290 6.202570 GGCAATCACAAGTTAAATGCAAAAGA 59.797 34.615 0.00 0.00 34.14 2.52
2742 3292 5.238214 GGGCAATCACAAGTTAAATGCAAAA 59.762 36.000 0.00 0.00 34.14 2.44
2755 3305 2.503356 ACAACCAAAAGGGCAATCACAA 59.497 40.909 0.00 0.00 42.05 3.33
2774 3324 0.035317 AGGTTCAGCTGCATTCGACA 59.965 50.000 9.47 0.00 0.00 4.35
2777 3327 2.350522 AGTAAGGTTCAGCTGCATTCG 58.649 47.619 9.47 0.00 0.00 3.34
2814 3365 7.800380 CAGAGAAGCTGTAAACTGTAATGTTTG 59.200 37.037 0.00 0.00 37.96 2.93
2835 3397 2.906389 ACAACAGGAAGGCATACAGAGA 59.094 45.455 0.00 0.00 0.00 3.10
2838 3400 3.569701 ACAAACAACAGGAAGGCATACAG 59.430 43.478 0.00 0.00 0.00 2.74
2842 3404 3.832527 AGTACAAACAACAGGAAGGCAT 58.167 40.909 0.00 0.00 0.00 4.40
2858 3420 2.902705 ACGCTCCAGAACAAAGTACA 57.097 45.000 0.00 0.00 0.00 2.90
2859 3421 4.547406 AAAACGCTCCAGAACAAAGTAC 57.453 40.909 0.00 0.00 0.00 2.73
2865 3427 4.453136 GGTACAATAAAACGCTCCAGAACA 59.547 41.667 0.00 0.00 0.00 3.18
2891 3453 3.149196 TCCTTTCACTTTAGCTTGCAGG 58.851 45.455 0.00 0.00 0.00 4.85
2892 3454 3.817647 ACTCCTTTCACTTTAGCTTGCAG 59.182 43.478 0.00 0.00 0.00 4.41
2895 3457 6.483640 AGTGTTACTCCTTTCACTTTAGCTTG 59.516 38.462 0.00 0.00 37.81 4.01
2950 3514 9.067986 AGAAAGACATAACTTAAGAAACCAAGG 57.932 33.333 10.09 0.00 0.00 3.61
2977 3541 9.522804 GGTCTGTAGCTAATGCAAGATATATAC 57.477 37.037 0.00 0.00 42.74 1.47
2992 3556 1.095600 CGCACTGAGGTCTGTAGCTA 58.904 55.000 0.00 0.00 32.30 3.32
3011 3576 2.028930 AGAACAGGAGGACGAATGTGAC 60.029 50.000 0.00 0.00 0.00 3.67
3020 3597 0.036022 AAGCAGCAGAACAGGAGGAC 59.964 55.000 0.00 0.00 0.00 3.85
3028 3605 5.330295 CATTCACTATCAAAGCAGCAGAAC 58.670 41.667 0.00 0.00 0.00 3.01
3179 7675 7.444183 AGAACACTGTAGCTAATGCAAAAGTTA 59.556 33.333 0.00 0.00 42.74 2.24
3375 7885 6.183360 CCACCACGATATAGACAGACAAAAAC 60.183 42.308 0.00 0.00 0.00 2.43
3438 7948 1.776667 CAGGCCCCTTGATTAGATCCA 59.223 52.381 0.00 0.00 0.00 3.41
3445 7955 2.178544 AGCATAATCAGGCCCCTTGATT 59.821 45.455 19.31 19.31 36.42 2.57
3452 7962 4.829492 AGTATTTTCAGCATAATCAGGCCC 59.171 41.667 0.00 0.00 29.59 5.80
3508 8045 1.114627 GGCCCAACATCCATCTTTCC 58.885 55.000 0.00 0.00 0.00 3.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.