Multiple sequence alignment - TraesCS7D01G125000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G125000 chr7D 100.000 4808 0 0 1 4808 78303922 78299115 0.000000e+00 8879.0
1 TraesCS7D01G125000 chr7D 83.646 2776 368 44 1346 4077 78211080 78208347 0.000000e+00 2532.0
2 TraesCS7D01G125000 chr7D 86.796 1439 172 14 2487 3913 78308042 78306610 0.000000e+00 1589.0
3 TraesCS7D01G125000 chr7D 80.603 995 185 3 1355 2342 78309144 78308151 0.000000e+00 761.0
4 TraesCS7D01G125000 chr7D 85.553 443 49 9 561 989 573439522 573439081 2.640000e-122 449.0
5 TraesCS7D01G125000 chr7D 92.857 280 18 2 166 444 426216485 426216207 5.790000e-109 405.0
6 TraesCS7D01G125000 chr7D 92.832 279 18 2 171 447 466815916 466816194 2.080000e-108 403.0
7 TraesCS7D01G125000 chr7D 83.257 436 50 12 4083 4500 78305947 78305517 3.510000e-101 379.0
8 TraesCS7D01G125000 chr7D 96.739 184 3 1 4625 4808 25949681 25949501 2.170000e-78 303.0
9 TraesCS7D01G125000 chr7D 86.121 281 22 9 3816 4081 78299844 78299566 2.190000e-73 287.0
10 TraesCS7D01G125000 chr7D 86.121 281 22 9 4079 4357 78300107 78299842 2.190000e-73 287.0
11 TraesCS7D01G125000 chr7D 85.882 255 15 7 3818 4052 78306588 78306335 7.990000e-63 252.0
12 TraesCS7D01G125000 chr7B 96.136 4011 100 14 437 4411 25656640 25652649 0.000000e+00 6497.0
13 TraesCS7D01G125000 chr7B 83.519 2779 378 44 1341 4077 25632252 25629512 0.000000e+00 2521.0
14 TraesCS7D01G125000 chr7B 85.994 1428 181 12 2492 3914 25887589 25889002 0.000000e+00 1511.0
15 TraesCS7D01G125000 chr7B 87.842 658 76 3 3138 3793 25663474 25662819 0.000000e+00 769.0
16 TraesCS7D01G125000 chr7B 80.039 1022 174 15 1342 2342 25886463 25887475 0.000000e+00 730.0
17 TraesCS7D01G125000 chr7B 85.990 621 85 2 2487 3106 25664089 25663470 0.000000e+00 664.0
18 TraesCS7D01G125000 chr7B 85.377 424 47 12 4080 4500 25889660 25890071 4.450000e-115 425.0
19 TraesCS7D01G125000 chr7B 92.115 279 22 0 166 444 463036934 463036656 1.250000e-105 394.0
20 TraesCS7D01G125000 chr7B 82.902 386 61 5 605 986 742247249 742247633 4.610000e-90 342.0
21 TraesCS7D01G125000 chr7B 83.478 345 57 0 1998 2342 25664542 25664198 6.000000e-84 322.0
22 TraesCS7D01G125000 chr7B 86.102 295 27 7 3782 4065 25889625 25889916 6.050000e-79 305.0
23 TraesCS7D01G125000 chr7B 94.475 181 1 1 4453 4624 25652653 25652473 2.210000e-68 270.0
24 TraesCS7D01G125000 chr7B 83.793 290 21 12 3816 4081 25652990 25652703 7.990000e-63 252.0
25 TraesCS7D01G125000 chr7B 85.098 255 17 7 3818 4052 25889023 25889276 1.730000e-59 241.0
26 TraesCS7D01G125000 chr7B 94.845 97 3 2 77 172 25656725 25656630 3.000000e-32 150.0
27 TraesCS7D01G125000 chr7B 95.946 74 3 0 3 76 25656850 25656777 2.350000e-23 121.0
28 TraesCS7D01G125000 chr7A 84.927 2793 354 38 1323 4081 81769873 81767114 0.000000e+00 2763.0
29 TraesCS7D01G125000 chr7A 83.465 2782 390 36 1341 4077 81642292 81639536 0.000000e+00 2525.0
30 TraesCS7D01G125000 chr7A 87.348 1312 157 8 2487 3790 81776918 81775608 0.000000e+00 1495.0
31 TraesCS7D01G125000 chr7A 82.637 455 69 8 544 989 538958006 538957553 1.250000e-105 394.0
32 TraesCS7D01G125000 chr7A 80.694 461 75 9 545 991 470881541 470881081 3.560000e-91 346.0
33 TraesCS7D01G125000 chr6D 92.832 279 18 1 171 447 334161171 334161449 2.080000e-108 403.0
34 TraesCS7D01G125000 chr6D 92.473 279 19 2 171 447 107673357 107673635 9.700000e-107 398.0
35 TraesCS7D01G125000 chr6D 81.184 473 60 18 545 999 53777674 53777213 2.130000e-93 353.0
36 TraesCS7D01G125000 chr6D 99.468 188 1 0 4621 4808 468691893 468692080 4.610000e-90 342.0
37 TraesCS7D01G125000 chr6D 82.258 310 48 7 599 902 456332360 456332668 1.330000e-65 261.0
38 TraesCS7D01G125000 chr3D 92.832 279 18 1 171 447 36764150 36763872 2.080000e-108 403.0
39 TraesCS7D01G125000 chr3D 82.857 455 48 19 547 986 606385570 606386009 9.760000e-102 381.0
40 TraesCS7D01G125000 chr3D 97.826 184 4 0 4625 4808 4652882 4653065 7.770000e-83 318.0
41 TraesCS7D01G125000 chr3D 97.826 184 4 0 4625 4808 595789929 595789746 7.770000e-83 318.0
42 TraesCS7D01G125000 chr3D 76.344 186 36 7 547 727 34130645 34130463 5.120000e-15 93.5
43 TraesCS7D01G125000 chr1B 93.015 272 17 2 171 441 145817699 145817429 3.490000e-106 396.0
44 TraesCS7D01G125000 chr1B 93.015 272 17 2 171 441 145837665 145837395 3.490000e-106 396.0
45 TraesCS7D01G125000 chr1B 79.902 408 69 12 590 989 577032140 577031738 2.190000e-73 287.0
46 TraesCS7D01G125000 chr4B 92.171 281 18 4 166 443 92958017 92957738 1.250000e-105 394.0
47 TraesCS7D01G125000 chr4B 80.916 393 58 11 547 923 665454804 665455195 1.310000e-75 294.0
48 TraesCS7D01G125000 chr2B 82.561 453 65 10 547 985 648355007 648355459 2.100000e-103 387.0
49 TraesCS7D01G125000 chr6A 81.741 471 66 15 545 999 61193771 61194237 4.540000e-100 375.0
50 TraesCS7D01G125000 chr4D 81.739 460 54 8 545 988 396431867 396431422 1.650000e-94 357.0
51 TraesCS7D01G125000 chr4D 99.457 184 1 0 4625 4808 190960053 190959870 7.710000e-88 335.0
52 TraesCS7D01G125000 chr3B 82.952 393 57 8 600 986 237603432 237603820 3.560000e-91 346.0
53 TraesCS7D01G125000 chr5D 99.457 184 1 0 4625 4808 18172691 18172508 7.710000e-88 335.0
54 TraesCS7D01G125000 chr5D 80.346 463 70 12 547 992 487877295 487877753 9.970000e-87 331.0
55 TraesCS7D01G125000 chr5D 80.435 460 58 21 545 988 310025158 310024715 6.000000e-84 322.0
56 TraesCS7D01G125000 chr1A 82.597 385 57 7 612 988 554341727 554341345 9.970000e-87 331.0
57 TraesCS7D01G125000 chr1A 82.597 385 57 7 612 988 554359253 554358871 9.970000e-87 331.0
58 TraesCS7D01G125000 chrUn 80.440 455 68 14 545 981 2576211 2575760 1.290000e-85 327.0
59 TraesCS7D01G125000 chrUn 83.036 112 14 4 440 548 82539913 82540022 3.960000e-16 97.1
60 TraesCS7D01G125000 chr2D 98.370 184 3 0 4625 4808 631170976 631171159 1.670000e-84 324.0
61 TraesCS7D01G125000 chr1D 97.826 184 4 0 4625 4808 19677744 19677927 7.770000e-83 318.0
62 TraesCS7D01G125000 chr2A 95.652 184 8 0 4625 4808 607474456 607474273 3.640000e-76 296.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G125000 chr7D 78299115 78303922 4807 True 8879.00 8879 100.0000 1 4808 1 chr7D.!!$R3 4807
1 TraesCS7D01G125000 chr7D 78208347 78211080 2733 True 2532.00 2532 83.6460 1346 4077 1 chr7D.!!$R2 2731
2 TraesCS7D01G125000 chr7D 78305517 78309144 3627 True 745.25 1589 84.1345 1355 4500 4 chr7D.!!$R7 3145
3 TraesCS7D01G125000 chr7D 78299566 78300107 541 True 287.00 287 86.1210 3816 4357 2 chr7D.!!$R6 541
4 TraesCS7D01G125000 chr7B 25629512 25632252 2740 True 2521.00 2521 83.5190 1341 4077 1 chr7B.!!$R1 2736
5 TraesCS7D01G125000 chr7B 25652473 25656850 4377 True 1458.00 6497 93.0390 3 4624 5 chr7B.!!$R3 4621
6 TraesCS7D01G125000 chr7B 25886463 25890071 3608 False 642.40 1511 84.5220 1342 4500 5 chr7B.!!$F2 3158
7 TraesCS7D01G125000 chr7B 25662819 25664542 1723 True 585.00 769 85.7700 1998 3793 3 chr7B.!!$R4 1795
8 TraesCS7D01G125000 chr7A 81767114 81769873 2759 True 2763.00 2763 84.9270 1323 4081 1 chr7A.!!$R2 2758
9 TraesCS7D01G125000 chr7A 81639536 81642292 2756 True 2525.00 2525 83.4650 1341 4077 1 chr7A.!!$R1 2736
10 TraesCS7D01G125000 chr7A 81775608 81776918 1310 True 1495.00 1495 87.3480 2487 3790 1 chr7A.!!$R3 1303

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
646 698 0.254462 TTTATCCATCCGTGCAGCCA 59.746 50.000 0.00 0.00 0.00 4.75 F
647 699 0.473755 TTATCCATCCGTGCAGCCAT 59.526 50.000 0.00 0.00 0.00 4.40 F
973 1025 1.003928 GGATGGTTTAAGGTGTCCGGT 59.996 52.381 0.00 0.00 0.00 5.28 F
2023 2132 0.108945 GGAGCGCTTACAACCGTAGT 60.109 55.000 13.26 0.00 0.00 2.73 F
2227 2336 3.288092 AGTCTGCGATGTACATGGACTA 58.712 45.455 20.66 6.01 31.93 2.59 F
3742 4617 1.028330 CGAGCATGAGCCATGTGGTT 61.028 55.000 14.21 0.00 43.10 3.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1775 1884 1.135575 GCTCTTCCAAAGTTGCCGATG 60.136 52.381 0.00 0.00 0.00 3.84 R
1776 1885 1.168714 GCTCTTCCAAAGTTGCCGAT 58.831 50.000 0.00 0.00 0.00 4.18 R
2691 2884 1.737236 CCTTGAACATCCGCGATGAAA 59.263 47.619 20.36 12.34 42.09 2.69 R
3742 4617 4.159321 TCCACAAGTGAAAGCATTGTTTCA 59.841 37.500 0.94 9.09 42.79 2.69 R
3749 4624 6.594788 ACATTATTCCACAAGTGAAAGCAT 57.405 33.333 0.94 0.00 0.00 3.79 R
4740 5803 0.035152 TTGATGAATCGCACAGCCCT 60.035 50.000 0.00 0.00 0.00 5.19 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 47 2.858344 AGCGCGTGTATTATGAAGTCAC 59.142 45.455 8.43 0.00 0.00 3.67
113 165 3.000041 CGCTTACAACCTGCTTACATGA 59.000 45.455 0.00 0.00 0.00 3.07
116 168 4.396166 GCTTACAACCTGCTTACATGACAT 59.604 41.667 0.00 0.00 0.00 3.06
171 223 7.631717 AAAGTAAGGGAATGAACTCTTATGC 57.368 36.000 0.00 0.00 35.66 3.14
172 224 6.567602 AGTAAGGGAATGAACTCTTATGCT 57.432 37.500 0.00 0.00 35.66 3.79
173 225 7.676683 AGTAAGGGAATGAACTCTTATGCTA 57.323 36.000 0.00 0.00 35.66 3.49
174 226 7.501844 AGTAAGGGAATGAACTCTTATGCTAC 58.498 38.462 0.00 0.00 35.66 3.58
175 227 6.567602 AAGGGAATGAACTCTTATGCTACT 57.432 37.500 0.00 0.00 0.00 2.57
176 228 6.168270 AGGGAATGAACTCTTATGCTACTC 57.832 41.667 0.00 0.00 0.00 2.59
177 229 5.663106 AGGGAATGAACTCTTATGCTACTCA 59.337 40.000 0.00 0.00 0.00 3.41
178 230 6.328672 AGGGAATGAACTCTTATGCTACTCAT 59.671 38.462 0.00 0.00 39.17 2.90
179 231 7.510685 AGGGAATGAACTCTTATGCTACTCATA 59.489 37.037 0.00 0.00 36.63 2.15
180 232 7.816995 GGGAATGAACTCTTATGCTACTCATAG 59.183 40.741 0.00 0.00 38.75 2.23
181 233 8.364142 GGAATGAACTCTTATGCTACTCATAGT 58.636 37.037 0.00 0.00 38.75 2.12
182 234 9.190858 GAATGAACTCTTATGCTACTCATAGTG 57.809 37.037 0.00 0.00 38.75 2.74
183 235 7.043961 TGAACTCTTATGCTACTCATAGTGG 57.956 40.000 0.00 0.00 38.75 4.00
184 236 6.040955 TGAACTCTTATGCTACTCATAGTGGG 59.959 42.308 0.00 0.00 38.75 4.61
185 237 4.835615 ACTCTTATGCTACTCATAGTGGGG 59.164 45.833 0.00 0.00 38.75 4.96
186 238 5.074746 TCTTATGCTACTCATAGTGGGGA 57.925 43.478 0.00 0.00 38.75 4.81
187 239 5.080337 TCTTATGCTACTCATAGTGGGGAG 58.920 45.833 0.00 0.00 38.75 4.30
188 240 2.848678 TGCTACTCATAGTGGGGAGT 57.151 50.000 0.00 0.00 45.72 3.85
189 241 3.965470 TGCTACTCATAGTGGGGAGTA 57.035 47.619 0.00 0.00 42.30 2.59
190 242 4.471078 TGCTACTCATAGTGGGGAGTAT 57.529 45.455 0.00 0.00 43.51 2.12
191 243 4.408276 TGCTACTCATAGTGGGGAGTATC 58.592 47.826 0.00 0.00 43.51 2.24
192 244 4.141018 TGCTACTCATAGTGGGGAGTATCA 60.141 45.833 0.00 0.00 43.51 2.15
193 245 5.020132 GCTACTCATAGTGGGGAGTATCAT 58.980 45.833 0.00 0.00 43.51 2.45
194 246 6.188407 GCTACTCATAGTGGGGAGTATCATA 58.812 44.000 0.00 0.00 43.51 2.15
195 247 6.836527 GCTACTCATAGTGGGGAGTATCATAT 59.163 42.308 0.00 0.00 43.51 1.78
196 248 7.999545 GCTACTCATAGTGGGGAGTATCATATA 59.000 40.741 0.00 0.00 43.51 0.86
197 249 9.344772 CTACTCATAGTGGGGAGTATCATATAC 57.655 40.741 0.00 0.00 43.51 1.47
198 250 7.945278 ACTCATAGTGGGGAGTATCATATACT 58.055 38.462 0.00 0.00 42.30 2.12
199 251 9.070210 ACTCATAGTGGGGAGTATCATATACTA 57.930 37.037 0.00 0.00 42.30 1.82
200 252 9.922477 CTCATAGTGGGGAGTATCATATACTAA 57.078 37.037 0.00 0.00 36.25 2.24
237 289 7.862512 AATACTAGCGTATGATACTACCTCC 57.137 40.000 0.66 0.00 36.48 4.30
238 290 5.238624 ACTAGCGTATGATACTACCTCCA 57.761 43.478 0.66 0.00 0.00 3.86
239 291 5.817784 ACTAGCGTATGATACTACCTCCAT 58.182 41.667 0.66 0.00 0.00 3.41
240 292 6.955364 ACTAGCGTATGATACTACCTCCATA 58.045 40.000 0.66 0.00 0.00 2.74
241 293 7.400439 ACTAGCGTATGATACTACCTCCATAA 58.600 38.462 0.66 0.00 0.00 1.90
242 294 8.053963 ACTAGCGTATGATACTACCTCCATAAT 58.946 37.037 0.66 0.00 0.00 1.28
243 295 7.101652 AGCGTATGATACTACCTCCATAATG 57.898 40.000 0.66 0.00 0.00 1.90
244 296 5.749109 GCGTATGATACTACCTCCATAATGC 59.251 44.000 0.66 0.00 0.00 3.56
245 297 6.627287 GCGTATGATACTACCTCCATAATGCA 60.627 42.308 0.66 0.00 31.29 3.96
246 298 7.492524 CGTATGATACTACCTCCATAATGCAT 58.507 38.462 0.00 0.00 0.00 3.96
247 299 8.630037 CGTATGATACTACCTCCATAATGCATA 58.370 37.037 0.00 0.00 0.00 3.14
248 300 9.751542 GTATGATACTACCTCCATAATGCATAC 57.248 37.037 0.00 0.00 0.00 2.39
249 301 8.615360 ATGATACTACCTCCATAATGCATACT 57.385 34.615 0.00 0.00 0.00 2.12
250 302 9.715119 ATGATACTACCTCCATAATGCATACTA 57.285 33.333 0.00 0.00 0.00 1.82
251 303 9.715119 TGATACTACCTCCATAATGCATACTAT 57.285 33.333 0.00 0.00 0.00 2.12
253 305 9.715119 ATACTACCTCCATAATGCATACTATCA 57.285 33.333 0.00 0.00 0.00 2.15
254 306 8.615360 ACTACCTCCATAATGCATACTATCAT 57.385 34.615 0.00 0.00 0.00 2.45
255 307 9.715119 ACTACCTCCATAATGCATACTATCATA 57.285 33.333 0.00 0.00 0.00 2.15
258 310 9.896645 ACCTCCATAATGCATACTATCATAAAG 57.103 33.333 0.00 0.00 0.00 1.85
259 311 9.896645 CCTCCATAATGCATACTATCATAAAGT 57.103 33.333 0.00 0.00 0.00 2.66
296 348 9.811995 ATGATTATATTTATTGCCATGCATGAC 57.188 29.630 28.31 17.77 38.76 3.06
297 349 8.804204 TGATTATATTTATTGCCATGCATGACA 58.196 29.630 28.31 20.53 38.76 3.58
298 350 8.991243 ATTATATTTATTGCCATGCATGACAC 57.009 30.769 28.31 16.49 38.76 3.67
299 351 4.739587 ATTTATTGCCATGCATGACACA 57.260 36.364 28.31 18.81 38.76 3.72
300 352 4.532314 TTTATTGCCATGCATGACACAA 57.468 36.364 28.31 25.14 38.76 3.33
301 353 4.532314 TTATTGCCATGCATGACACAAA 57.468 36.364 28.31 15.45 38.76 2.83
302 354 2.442212 TTGCCATGCATGACACAAAG 57.558 45.000 28.31 10.23 38.76 2.77
303 355 1.330234 TGCCATGCATGACACAAAGT 58.670 45.000 28.31 0.00 31.71 2.66
304 356 2.512705 TGCCATGCATGACACAAAGTA 58.487 42.857 28.31 5.91 31.71 2.24
305 357 2.488937 TGCCATGCATGACACAAAGTAG 59.511 45.455 28.31 8.01 31.71 2.57
306 358 2.733227 GCCATGCATGACACAAAGTAGC 60.733 50.000 28.31 14.15 0.00 3.58
307 359 2.488937 CCATGCATGACACAAAGTAGCA 59.511 45.455 28.31 0.00 37.13 3.49
308 360 3.129813 CCATGCATGACACAAAGTAGCAT 59.870 43.478 28.31 0.00 41.24 3.79
309 361 4.336153 CCATGCATGACACAAAGTAGCATA 59.664 41.667 28.31 0.00 39.67 3.14
310 362 5.505159 CCATGCATGACACAAAGTAGCATAG 60.505 44.000 28.31 0.74 39.67 2.23
311 363 3.374988 TGCATGACACAAAGTAGCATAGC 59.625 43.478 0.00 0.00 30.65 2.97
312 364 3.374988 GCATGACACAAAGTAGCATAGCA 59.625 43.478 0.00 0.00 0.00 3.49
313 365 4.036027 GCATGACACAAAGTAGCATAGCAT 59.964 41.667 0.00 0.00 0.00 3.79
314 366 5.449588 GCATGACACAAAGTAGCATAGCATT 60.450 40.000 0.00 0.00 0.00 3.56
315 367 6.558009 CATGACACAAAGTAGCATAGCATTT 58.442 36.000 0.00 0.00 0.00 2.32
316 368 7.679400 GCATGACACAAAGTAGCATAGCATTTA 60.679 37.037 0.00 0.00 0.00 1.40
317 369 7.680442 TGACACAAAGTAGCATAGCATTTAA 57.320 32.000 0.00 0.00 0.00 1.52
318 370 7.526608 TGACACAAAGTAGCATAGCATTTAAC 58.473 34.615 0.00 0.00 0.00 2.01
319 371 7.174080 TGACACAAAGTAGCATAGCATTTAACA 59.826 33.333 0.00 0.00 0.00 2.41
320 372 8.055279 ACACAAAGTAGCATAGCATTTAACAT 57.945 30.769 0.00 0.00 0.00 2.71
321 373 7.970061 ACACAAAGTAGCATAGCATTTAACATG 59.030 33.333 0.00 0.00 0.00 3.21
322 374 8.183536 CACAAAGTAGCATAGCATTTAACATGA 58.816 33.333 0.00 0.00 0.00 3.07
323 375 8.906867 ACAAAGTAGCATAGCATTTAACATGAT 58.093 29.630 0.00 0.00 0.00 2.45
327 379 9.170734 AGTAGCATAGCATTTAACATGATATGG 57.829 33.333 22.69 13.18 44.20 2.74
331 383 9.941664 GCATAGCATTTAACATGATATGGTATC 57.058 33.333 22.69 11.97 44.20 2.24
335 387 9.672673 AGCATTTAACATGATATGGTATCTACC 57.327 33.333 0.00 0.00 46.62 3.18
336 388 9.672673 GCATTTAACATGATATGGTATCTACCT 57.327 33.333 0.00 0.00 46.58 3.08
350 402 8.930846 TGGTATCTACCTATGTTACTCTAACC 57.069 38.462 7.84 0.00 46.58 2.85
351 403 7.946776 TGGTATCTACCTATGTTACTCTAACCC 59.053 40.741 7.84 0.00 46.58 4.11
352 404 8.169393 GGTATCTACCTATGTTACTCTAACCCT 58.831 40.741 0.00 0.00 43.10 4.34
353 405 9.230122 GTATCTACCTATGTTACTCTAACCCTC 57.770 40.741 0.00 0.00 37.88 4.30
354 406 7.463054 TCTACCTATGTTACTCTAACCCTCT 57.537 40.000 0.00 0.00 37.88 3.69
355 407 7.516452 TCTACCTATGTTACTCTAACCCTCTC 58.484 42.308 0.00 0.00 37.88 3.20
356 408 6.344232 ACCTATGTTACTCTAACCCTCTCT 57.656 41.667 0.00 0.00 37.88 3.10
357 409 6.367161 ACCTATGTTACTCTAACCCTCTCTC 58.633 44.000 0.00 0.00 37.88 3.20
358 410 6.160814 ACCTATGTTACTCTAACCCTCTCTCT 59.839 42.308 0.00 0.00 37.88 3.10
359 411 7.064229 CCTATGTTACTCTAACCCTCTCTCTT 58.936 42.308 0.00 0.00 37.88 2.85
360 412 7.229907 CCTATGTTACTCTAACCCTCTCTCTTC 59.770 44.444 0.00 0.00 37.88 2.87
361 413 6.142259 TGTTACTCTAACCCTCTCTCTTCT 57.858 41.667 0.00 0.00 37.88 2.85
362 414 6.553857 TGTTACTCTAACCCTCTCTCTTCTT 58.446 40.000 0.00 0.00 37.88 2.52
363 415 7.011382 TGTTACTCTAACCCTCTCTCTTCTTT 58.989 38.462 0.00 0.00 37.88 2.52
364 416 8.168725 TGTTACTCTAACCCTCTCTCTTCTTTA 58.831 37.037 0.00 0.00 37.88 1.85
365 417 9.022884 GTTACTCTAACCCTCTCTCTTCTTTAA 57.977 37.037 0.00 0.00 32.59 1.52
366 418 9.771140 TTACTCTAACCCTCTCTCTTCTTTAAT 57.229 33.333 0.00 0.00 0.00 1.40
367 419 8.673456 ACTCTAACCCTCTCTCTTCTTTAATT 57.327 34.615 0.00 0.00 0.00 1.40
368 420 9.771140 ACTCTAACCCTCTCTCTTCTTTAATTA 57.229 33.333 0.00 0.00 0.00 1.40
370 422 9.771140 TCTAACCCTCTCTCTTCTTTAATTAGT 57.229 33.333 0.00 0.00 0.00 2.24
373 425 7.106890 ACCCTCTCTCTTCTTTAATTAGTTGC 58.893 38.462 0.00 0.00 0.00 4.17
374 426 6.540551 CCCTCTCTCTTCTTTAATTAGTTGCC 59.459 42.308 0.00 0.00 0.00 4.52
375 427 7.106239 CCTCTCTCTTCTTTAATTAGTTGCCA 58.894 38.462 0.00 0.00 0.00 4.92
376 428 7.772757 CCTCTCTCTTCTTTAATTAGTTGCCAT 59.227 37.037 0.00 0.00 0.00 4.40
377 429 8.498054 TCTCTCTTCTTTAATTAGTTGCCATG 57.502 34.615 0.00 0.00 0.00 3.66
378 430 8.103305 TCTCTCTTCTTTAATTAGTTGCCATGT 58.897 33.333 0.00 0.00 0.00 3.21
379 431 9.383519 CTCTCTTCTTTAATTAGTTGCCATGTA 57.616 33.333 0.00 0.00 0.00 2.29
380 432 9.733556 TCTCTTCTTTAATTAGTTGCCATGTAA 57.266 29.630 0.00 0.00 0.00 2.41
381 433 9.994432 CTCTTCTTTAATTAGTTGCCATGTAAG 57.006 33.333 0.00 0.00 0.00 2.34
382 434 8.458843 TCTTCTTTAATTAGTTGCCATGTAAGC 58.541 33.333 0.00 0.00 0.00 3.09
383 435 7.695480 TCTTTAATTAGTTGCCATGTAAGCA 57.305 32.000 0.00 0.00 38.81 3.91
384 436 8.292444 TCTTTAATTAGTTGCCATGTAAGCAT 57.708 30.769 0.00 0.00 40.59 3.79
403 455 5.209944 GCATGTTTGCTAGTCTCAAGTAC 57.790 43.478 0.00 0.00 45.77 2.73
404 456 4.690748 GCATGTTTGCTAGTCTCAAGTACA 59.309 41.667 0.00 0.00 45.77 2.90
405 457 5.352569 GCATGTTTGCTAGTCTCAAGTACAT 59.647 40.000 0.00 0.00 45.77 2.29
406 458 6.674037 GCATGTTTGCTAGTCTCAAGTACATG 60.674 42.308 15.20 15.20 45.77 3.21
407 459 5.853936 TGTTTGCTAGTCTCAAGTACATGT 58.146 37.500 2.69 2.69 0.00 3.21
408 460 6.288294 TGTTTGCTAGTCTCAAGTACATGTT 58.712 36.000 2.30 0.00 0.00 2.71
409 461 7.438564 TGTTTGCTAGTCTCAAGTACATGTTA 58.561 34.615 2.30 0.00 0.00 2.41
410 462 7.384115 TGTTTGCTAGTCTCAAGTACATGTTAC 59.616 37.037 2.30 0.25 0.00 2.50
411 463 5.962433 TGCTAGTCTCAAGTACATGTTACC 58.038 41.667 2.30 0.00 0.00 2.85
412 464 5.035443 GCTAGTCTCAAGTACATGTTACCG 58.965 45.833 2.30 0.00 0.00 4.02
413 465 4.451629 AGTCTCAAGTACATGTTACCGG 57.548 45.455 2.30 0.00 0.00 5.28
414 466 3.830755 AGTCTCAAGTACATGTTACCGGT 59.169 43.478 13.98 13.98 0.00 5.28
415 467 4.282703 AGTCTCAAGTACATGTTACCGGTT 59.717 41.667 15.04 0.00 0.00 4.44
416 468 5.477984 AGTCTCAAGTACATGTTACCGGTTA 59.522 40.000 15.04 0.00 0.00 2.85
417 469 6.154021 AGTCTCAAGTACATGTTACCGGTTAT 59.846 38.462 15.04 2.09 0.00 1.89
418 470 6.255020 GTCTCAAGTACATGTTACCGGTTATG 59.745 42.308 15.04 17.64 0.00 1.90
419 471 6.040209 TCAAGTACATGTTACCGGTTATGT 57.960 37.500 25.25 25.25 37.51 2.29
420 472 6.465948 TCAAGTACATGTTACCGGTTATGTT 58.534 36.000 26.37 13.87 35.55 2.71
421 473 7.609960 TCAAGTACATGTTACCGGTTATGTTA 58.390 34.615 26.37 15.17 35.55 2.41
422 474 7.545265 TCAAGTACATGTTACCGGTTATGTTAC 59.455 37.037 26.37 21.63 35.55 2.50
423 475 7.174107 AGTACATGTTACCGGTTATGTTACT 57.826 36.000 26.37 22.77 35.55 2.24
424 476 7.260603 AGTACATGTTACCGGTTATGTTACTC 58.739 38.462 26.37 17.69 35.55 2.59
425 477 5.422145 ACATGTTACCGGTTATGTTACTCC 58.578 41.667 15.04 0.00 30.05 3.85
426 478 4.470334 TGTTACCGGTTATGTTACTCCC 57.530 45.455 15.04 0.00 0.00 4.30
427 479 3.837146 TGTTACCGGTTATGTTACTCCCA 59.163 43.478 15.04 0.00 0.00 4.37
428 480 4.183865 GTTACCGGTTATGTTACTCCCAC 58.816 47.826 15.04 0.00 0.00 4.61
429 481 2.543635 ACCGGTTATGTTACTCCCACT 58.456 47.619 0.00 0.00 0.00 4.00
430 482 3.711863 ACCGGTTATGTTACTCCCACTA 58.288 45.455 0.00 0.00 0.00 2.74
431 483 4.292643 ACCGGTTATGTTACTCCCACTAT 58.707 43.478 0.00 0.00 0.00 2.12
432 484 4.100498 ACCGGTTATGTTACTCCCACTATG 59.900 45.833 0.00 0.00 0.00 2.23
433 485 4.502604 CCGGTTATGTTACTCCCACTATGG 60.503 50.000 0.00 0.00 37.25 2.74
434 486 4.386711 GGTTATGTTACTCCCACTATGGC 58.613 47.826 0.00 0.00 35.79 4.40
435 487 4.386711 GTTATGTTACTCCCACTATGGCC 58.613 47.826 0.00 0.00 35.79 5.36
436 488 1.959710 TGTTACTCCCACTATGGCCA 58.040 50.000 8.56 8.56 35.79 5.36
437 489 2.270858 TGTTACTCCCACTATGGCCAA 58.729 47.619 10.96 0.00 35.79 4.52
438 490 2.026636 TGTTACTCCCACTATGGCCAAC 60.027 50.000 10.96 0.00 35.79 3.77
522 574 9.927668 AAGAGAAAGAGAGAAGATAGAACAAAG 57.072 33.333 0.00 0.00 0.00 2.77
558 610 6.575162 AACCAACCTTTAGAGCATTTACAG 57.425 37.500 0.00 0.00 0.00 2.74
576 628 3.141398 ACAGCCGGACATAGCAAATATG 58.859 45.455 5.05 0.00 45.86 1.78
587 639 7.451566 GGACATAGCAAATATGACCCCTTAAAT 59.548 37.037 2.05 0.00 45.52 1.40
597 649 1.427819 CCCTTAAATGCACGCGGAC 59.572 57.895 12.47 1.50 0.00 4.79
598 650 1.302383 CCCTTAAATGCACGCGGACA 61.302 55.000 12.47 8.69 0.00 4.02
601 653 1.130373 CTTAAATGCACGCGGACATGT 59.870 47.619 12.47 11.32 0.00 3.21
634 686 4.204012 CGTTTTGAGCCCCTATTTATCCA 58.796 43.478 0.00 0.00 0.00 3.41
643 695 3.338249 CCCTATTTATCCATCCGTGCAG 58.662 50.000 0.00 0.00 0.00 4.41
646 698 0.254462 TTTATCCATCCGTGCAGCCA 59.746 50.000 0.00 0.00 0.00 4.75
647 699 0.473755 TTATCCATCCGTGCAGCCAT 59.526 50.000 0.00 0.00 0.00 4.40
687 739 2.502213 TATATCCGGTCACTTGCACG 57.498 50.000 0.00 0.00 0.00 5.34
709 761 4.565962 CGTGATTGGTCAAGATGAAGAGAG 59.434 45.833 0.00 0.00 36.13 3.20
715 767 6.617782 TGGTCAAGATGAAGAGAGAGAAAT 57.382 37.500 0.00 0.00 0.00 2.17
778 830 1.498865 CGTCCTATGTGGCGGAATGC 61.499 60.000 0.00 0.00 45.38 3.56
819 871 3.356837 CGAGCCCTCGTATCCTCC 58.643 66.667 9.41 0.00 46.99 4.30
822 874 1.228306 AGCCCTCGTATCCTCCTCG 60.228 63.158 0.00 0.00 0.00 4.63
839 891 8.067751 TCCTCCTCGTATTTAAGATGGATATG 57.932 38.462 0.00 0.00 0.00 1.78
884 936 5.074115 CCTATAGGATGATACGAGGGATCC 58.926 50.000 14.11 1.92 37.39 3.36
913 965 4.369182 GTCACGTTTTTCCTTCTCTCTCA 58.631 43.478 0.00 0.00 0.00 3.27
916 968 4.752101 CACGTTTTTCCTTCTCTCTCATGT 59.248 41.667 0.00 0.00 0.00 3.21
962 1014 1.614850 GGGCGTTTGAGGGATGGTTTA 60.615 52.381 0.00 0.00 0.00 2.01
973 1025 1.003928 GGATGGTTTAAGGTGTCCGGT 59.996 52.381 0.00 0.00 0.00 5.28
1013 1065 6.291849 GCTCACACTATTGTATGAATGACGAC 60.292 42.308 0.00 0.00 33.30 4.34
1223 1275 1.286354 CGCGCCGTTCAGTCCTTTTA 61.286 55.000 0.00 0.00 0.00 1.52
1278 1330 2.978010 CCACGTGAACCTGGGTGC 60.978 66.667 19.30 0.00 0.00 5.01
1312 1367 3.913107 AGGTGCTTCCTCCTGCTT 58.087 55.556 0.00 0.00 44.42 3.91
1649 1758 1.140652 GATCCAGGCTCTCCTTCCAAG 59.859 57.143 0.00 0.00 41.93 3.61
1775 1884 1.139095 GTCGTCGTGGATCAGGACC 59.861 63.158 12.99 0.00 43.56 4.46
1776 1885 1.303806 TCGTCGTGGATCAGGACCA 60.304 57.895 12.99 0.00 43.56 4.02
1805 1914 2.732412 TTGGAAGAGCTTCGACTCAG 57.268 50.000 5.90 0.00 40.37 3.35
2008 2117 2.237392 ACTGTGGGTAAATCAGAGGAGC 59.763 50.000 0.00 0.00 33.93 4.70
2023 2132 0.108945 GGAGCGCTTACAACCGTAGT 60.109 55.000 13.26 0.00 0.00 2.73
2227 2336 3.288092 AGTCTGCGATGTACATGGACTA 58.712 45.455 20.66 6.01 31.93 2.59
2413 2606 4.497507 GCCACTTTTTCGTTCAGTAAGCTT 60.498 41.667 3.48 3.48 0.00 3.74
2619 2812 6.314917 ACATTTATCTGAAAGTTCCCAAGGT 58.685 36.000 0.00 0.00 33.76 3.50
2691 2884 8.770828 CAAAATTCATGAAAAAGAAGCAGACAT 58.229 29.630 13.09 0.00 0.00 3.06
3742 4617 1.028330 CGAGCATGAGCCATGTGGTT 61.028 55.000 14.21 0.00 43.10 3.67
3748 4623 2.064434 TGAGCCATGTGGTTGAAACA 57.936 45.000 0.35 0.00 37.57 2.83
3749 4624 2.382882 TGAGCCATGTGGTTGAAACAA 58.617 42.857 0.35 0.00 37.57 2.83
4406 5405 4.503741 TGCAGCCAACAGATTAAAGAAC 57.496 40.909 0.00 0.00 0.00 3.01
4407 5406 3.888323 TGCAGCCAACAGATTAAAGAACA 59.112 39.130 0.00 0.00 0.00 3.18
4408 5407 4.022935 TGCAGCCAACAGATTAAAGAACAG 60.023 41.667 0.00 0.00 0.00 3.16
4409 5408 4.216257 GCAGCCAACAGATTAAAGAACAGA 59.784 41.667 0.00 0.00 0.00 3.41
4410 5409 5.278463 GCAGCCAACAGATTAAAGAACAGAA 60.278 40.000 0.00 0.00 0.00 3.02
4411 5410 6.571150 GCAGCCAACAGATTAAAGAACAGAAT 60.571 38.462 0.00 0.00 0.00 2.40
4412 5411 6.805271 CAGCCAACAGATTAAAGAACAGAATG 59.195 38.462 0.00 0.00 46.00 2.67
4624 5687 3.986116 GAGGGGAGCGGGAAGGAGT 62.986 68.421 0.00 0.00 0.00 3.85
4625 5688 3.787001 GGGGAGCGGGAAGGAGTG 61.787 72.222 0.00 0.00 0.00 3.51
4626 5689 3.003763 GGGAGCGGGAAGGAGTGT 61.004 66.667 0.00 0.00 0.00 3.55
4627 5690 2.593956 GGGAGCGGGAAGGAGTGTT 61.594 63.158 0.00 0.00 0.00 3.32
4628 5691 1.262640 GGGAGCGGGAAGGAGTGTTA 61.263 60.000 0.00 0.00 0.00 2.41
4629 5692 0.175989 GGAGCGGGAAGGAGTGTTAG 59.824 60.000 0.00 0.00 0.00 2.34
4630 5693 1.183549 GAGCGGGAAGGAGTGTTAGA 58.816 55.000 0.00 0.00 0.00 2.10
4631 5694 0.896226 AGCGGGAAGGAGTGTTAGAC 59.104 55.000 0.00 0.00 0.00 2.59
4632 5695 0.896226 GCGGGAAGGAGTGTTAGACT 59.104 55.000 0.00 0.00 37.76 3.24
4633 5696 2.097825 GCGGGAAGGAGTGTTAGACTA 58.902 52.381 0.00 0.00 33.83 2.59
4634 5697 2.694109 GCGGGAAGGAGTGTTAGACTAT 59.306 50.000 0.00 0.00 33.83 2.12
4635 5698 3.491104 GCGGGAAGGAGTGTTAGACTATG 60.491 52.174 0.00 0.00 33.83 2.23
4636 5699 3.700038 CGGGAAGGAGTGTTAGACTATGT 59.300 47.826 0.00 0.00 33.83 2.29
4637 5700 4.885907 CGGGAAGGAGTGTTAGACTATGTA 59.114 45.833 0.00 0.00 33.83 2.29
4638 5701 5.359009 CGGGAAGGAGTGTTAGACTATGTAA 59.641 44.000 0.00 0.00 33.83 2.41
4639 5702 6.040616 CGGGAAGGAGTGTTAGACTATGTAAT 59.959 42.308 0.00 0.00 33.83 1.89
4640 5703 7.417570 CGGGAAGGAGTGTTAGACTATGTAATT 60.418 40.741 0.00 0.00 33.83 1.40
4641 5704 7.711339 GGGAAGGAGTGTTAGACTATGTAATTG 59.289 40.741 0.00 0.00 33.83 2.32
4642 5705 8.258708 GGAAGGAGTGTTAGACTATGTAATTGT 58.741 37.037 0.00 0.00 33.83 2.71
4666 5729 9.730705 TGTATTACGTATAGCTTCTGTATACCT 57.269 33.333 0.00 0.00 31.99 3.08
4670 5733 7.446001 ACGTATAGCTTCTGTATACCTAACC 57.554 40.000 0.00 0.00 31.99 2.85
4671 5734 6.148480 ACGTATAGCTTCTGTATACCTAACCG 59.852 42.308 0.00 4.04 31.99 4.44
4672 5735 6.148480 CGTATAGCTTCTGTATACCTAACCGT 59.852 42.308 0.00 0.00 31.99 4.83
4673 5736 4.650754 AGCTTCTGTATACCTAACCGTG 57.349 45.455 0.00 0.00 0.00 4.94
4674 5737 4.021916 AGCTTCTGTATACCTAACCGTGT 58.978 43.478 0.00 0.00 0.00 4.49
4675 5738 5.195940 AGCTTCTGTATACCTAACCGTGTA 58.804 41.667 0.00 0.00 0.00 2.90
4676 5739 5.832060 AGCTTCTGTATACCTAACCGTGTAT 59.168 40.000 0.00 0.00 0.00 2.29
4677 5740 5.919141 GCTTCTGTATACCTAACCGTGTATG 59.081 44.000 0.00 0.00 0.00 2.39
4678 5741 6.395426 TTCTGTATACCTAACCGTGTATGG 57.605 41.667 0.00 0.00 0.00 2.74
4679 5742 5.448654 TCTGTATACCTAACCGTGTATGGT 58.551 41.667 0.00 0.00 46.67 3.55
4689 5752 4.563140 ACCGTGTATGGTTAGGATTTGT 57.437 40.909 0.00 0.00 39.99 2.83
4690 5753 5.680594 ACCGTGTATGGTTAGGATTTGTA 57.319 39.130 0.00 0.00 39.99 2.41
4691 5754 5.422145 ACCGTGTATGGTTAGGATTTGTAC 58.578 41.667 0.00 0.00 39.99 2.90
4692 5755 5.188359 ACCGTGTATGGTTAGGATTTGTACT 59.812 40.000 0.00 0.00 39.99 2.73
4693 5756 6.110707 CCGTGTATGGTTAGGATTTGTACTT 58.889 40.000 0.00 0.00 0.00 2.24
4694 5757 6.596497 CCGTGTATGGTTAGGATTTGTACTTT 59.404 38.462 0.00 0.00 0.00 2.66
4695 5758 7.413657 CCGTGTATGGTTAGGATTTGTACTTTG 60.414 40.741 0.00 0.00 0.00 2.77
4696 5759 7.118680 CGTGTATGGTTAGGATTTGTACTTTGT 59.881 37.037 0.00 0.00 0.00 2.83
4697 5760 9.439500 GTGTATGGTTAGGATTTGTACTTTGTA 57.561 33.333 0.00 0.00 0.00 2.41
4698 5761 9.439500 TGTATGGTTAGGATTTGTACTTTGTAC 57.561 33.333 0.00 1.33 0.00 2.90
4699 5762 7.933215 ATGGTTAGGATTTGTACTTTGTACC 57.067 36.000 5.55 0.00 0.00 3.34
4700 5763 7.081857 TGGTTAGGATTTGTACTTTGTACCT 57.918 36.000 5.55 0.00 0.00 3.08
4701 5764 8.204903 TGGTTAGGATTTGTACTTTGTACCTA 57.795 34.615 5.55 0.00 0.00 3.08
4702 5765 8.828751 TGGTTAGGATTTGTACTTTGTACCTAT 58.171 33.333 5.55 0.04 0.00 2.57
4703 5766 9.106070 GGTTAGGATTTGTACTTTGTACCTATG 57.894 37.037 5.55 0.00 0.00 2.23
4704 5767 9.662947 GTTAGGATTTGTACTTTGTACCTATGT 57.337 33.333 5.55 0.00 0.00 2.29
4707 5770 9.662947 AGGATTTGTACTTTGTACCTATGTAAC 57.337 33.333 5.55 0.00 0.00 2.50
4708 5771 9.439500 GGATTTGTACTTTGTACCTATGTAACA 57.561 33.333 5.55 0.00 0.00 2.41
4710 5773 8.606040 TTTGTACTTTGTACCTATGTAACACC 57.394 34.615 5.55 0.00 0.00 4.16
4711 5774 7.300556 TGTACTTTGTACCTATGTAACACCA 57.699 36.000 5.55 0.00 0.00 4.17
4712 5775 7.733969 TGTACTTTGTACCTATGTAACACCAA 58.266 34.615 5.55 0.00 0.00 3.67
4713 5776 8.377034 TGTACTTTGTACCTATGTAACACCAAT 58.623 33.333 5.55 0.00 0.00 3.16
4714 5777 9.874205 GTACTTTGTACCTATGTAACACCAATA 57.126 33.333 0.00 0.00 0.00 1.90
4730 5793 7.884816 ACACCAATATATATACAACTCACGC 57.115 36.000 0.00 0.00 0.00 5.34
4731 5794 6.872020 ACACCAATATATATACAACTCACGCC 59.128 38.462 0.00 0.00 0.00 5.68
4732 5795 6.871492 CACCAATATATATACAACTCACGCCA 59.129 38.462 0.00 0.00 0.00 5.69
4733 5796 6.872020 ACCAATATATATACAACTCACGCCAC 59.128 38.462 0.00 0.00 0.00 5.01
4734 5797 6.312918 CCAATATATATACAACTCACGCCACC 59.687 42.308 0.00 0.00 0.00 4.61
4735 5798 2.614829 ATATACAACTCACGCCACCC 57.385 50.000 0.00 0.00 0.00 4.61
4736 5799 0.538118 TATACAACTCACGCCACCCC 59.462 55.000 0.00 0.00 0.00 4.95
4737 5800 1.198759 ATACAACTCACGCCACCCCT 61.199 55.000 0.00 0.00 0.00 4.79
4738 5801 0.542467 TACAACTCACGCCACCCCTA 60.542 55.000 0.00 0.00 0.00 3.53
4739 5802 1.079127 CAACTCACGCCACCCCTAG 60.079 63.158 0.00 0.00 0.00 3.02
4740 5803 1.229082 AACTCACGCCACCCCTAGA 60.229 57.895 0.00 0.00 0.00 2.43
4741 5804 1.258445 AACTCACGCCACCCCTAGAG 61.258 60.000 0.00 0.00 0.00 2.43
4742 5805 2.363795 TCACGCCACCCCTAGAGG 60.364 66.667 0.00 0.00 0.00 3.69
4752 5815 3.543537 CCTAGAGGGCTGTGCGAT 58.456 61.111 0.00 0.00 0.00 4.58
4753 5816 1.826024 CCTAGAGGGCTGTGCGATT 59.174 57.895 0.00 0.00 0.00 3.34
4754 5817 0.249657 CCTAGAGGGCTGTGCGATTC 60.250 60.000 0.00 0.00 0.00 2.52
4755 5818 0.461548 CTAGAGGGCTGTGCGATTCA 59.538 55.000 0.00 0.00 0.00 2.57
4756 5819 1.069823 CTAGAGGGCTGTGCGATTCAT 59.930 52.381 0.00 0.00 0.00 2.57
4757 5820 0.179062 AGAGGGCTGTGCGATTCATC 60.179 55.000 0.00 0.00 0.00 2.92
4758 5821 0.462581 GAGGGCTGTGCGATTCATCA 60.463 55.000 0.00 0.00 0.00 3.07
4759 5822 0.035152 AGGGCTGTGCGATTCATCAA 60.035 50.000 0.00 0.00 0.00 2.57
4760 5823 0.810648 GGGCTGTGCGATTCATCAAA 59.189 50.000 0.00 0.00 0.00 2.69
4761 5824 1.202114 GGGCTGTGCGATTCATCAAAA 59.798 47.619 0.00 0.00 0.00 2.44
4762 5825 2.523015 GGCTGTGCGATTCATCAAAAG 58.477 47.619 0.00 0.00 0.00 2.27
4763 5826 2.162208 GGCTGTGCGATTCATCAAAAGA 59.838 45.455 0.00 0.00 0.00 2.52
4764 5827 3.366273 GGCTGTGCGATTCATCAAAAGAA 60.366 43.478 0.00 0.00 0.00 2.52
4765 5828 3.850273 GCTGTGCGATTCATCAAAAGAAG 59.150 43.478 0.00 0.00 0.00 2.85
4766 5829 4.614535 GCTGTGCGATTCATCAAAAGAAGT 60.615 41.667 0.00 0.00 0.00 3.01
4767 5830 5.034554 TGTGCGATTCATCAAAAGAAGTC 57.965 39.130 0.00 0.00 0.00 3.01
4768 5831 4.756642 TGTGCGATTCATCAAAAGAAGTCT 59.243 37.500 0.00 0.00 0.00 3.24
4769 5832 5.931724 TGTGCGATTCATCAAAAGAAGTCTA 59.068 36.000 0.00 0.00 0.00 2.59
4770 5833 6.128553 TGTGCGATTCATCAAAAGAAGTCTAC 60.129 38.462 0.00 0.00 0.00 2.59
4771 5834 5.062183 TGCGATTCATCAAAAGAAGTCTACG 59.938 40.000 0.00 0.00 0.00 3.51
4772 5835 5.062308 GCGATTCATCAAAAGAAGTCTACGT 59.938 40.000 0.00 0.00 0.00 3.57
4773 5836 6.687655 CGATTCATCAAAAGAAGTCTACGTC 58.312 40.000 0.00 0.00 0.00 4.34
4774 5837 6.528423 CGATTCATCAAAAGAAGTCTACGTCT 59.472 38.462 0.00 0.00 36.27 4.18
4775 5838 7.696872 CGATTCATCAAAAGAAGTCTACGTCTA 59.303 37.037 0.00 0.00 33.66 2.59
4776 5839 9.355215 GATTCATCAAAAGAAGTCTACGTCTAA 57.645 33.333 0.00 0.00 33.66 2.10
4777 5840 9.877178 ATTCATCAAAAGAAGTCTACGTCTAAT 57.123 29.630 0.00 0.00 33.66 1.73
4781 5844 9.751542 ATCAAAAGAAGTCTACGTCTAATATGG 57.248 33.333 0.00 0.00 33.66 2.74
4782 5845 8.746530 TCAAAAGAAGTCTACGTCTAATATGGT 58.253 33.333 0.00 0.00 33.66 3.55
4786 5849 9.570468 AAGAAGTCTACGTCTAATATGGTATCA 57.430 33.333 0.00 0.00 33.66 2.15
4787 5850 9.221933 AGAAGTCTACGTCTAATATGGTATCAG 57.778 37.037 0.00 0.00 33.03 2.90
4788 5851 7.380431 AGTCTACGTCTAATATGGTATCAGC 57.620 40.000 0.00 0.00 0.00 4.26
4789 5852 7.169591 AGTCTACGTCTAATATGGTATCAGCT 58.830 38.462 0.00 0.00 0.00 4.24
4790 5853 7.666388 AGTCTACGTCTAATATGGTATCAGCTT 59.334 37.037 0.00 0.00 0.00 3.74
4791 5854 8.944029 GTCTACGTCTAATATGGTATCAGCTTA 58.056 37.037 0.00 0.00 0.00 3.09
4792 5855 9.163899 TCTACGTCTAATATGGTATCAGCTTAG 57.836 37.037 0.00 2.37 0.00 2.18
4793 5856 7.762588 ACGTCTAATATGGTATCAGCTTAGT 57.237 36.000 7.05 0.00 0.00 2.24
4794 5857 8.179509 ACGTCTAATATGGTATCAGCTTAGTT 57.820 34.615 7.05 0.00 0.00 2.24
4795 5858 9.293404 ACGTCTAATATGGTATCAGCTTAGTTA 57.707 33.333 7.05 0.00 0.00 2.24
4796 5859 9.557338 CGTCTAATATGGTATCAGCTTAGTTAC 57.443 37.037 7.05 0.00 0.00 2.50
4797 5860 9.557338 GTCTAATATGGTATCAGCTTAGTTACG 57.443 37.037 7.05 0.00 0.00 3.18
4798 5861 9.511272 TCTAATATGGTATCAGCTTAGTTACGA 57.489 33.333 0.00 0.00 0.00 3.43
4801 5864 5.104562 TGGTATCAGCTTAGTTACGATCG 57.895 43.478 14.88 14.88 0.00 3.69
4802 5865 4.577693 TGGTATCAGCTTAGTTACGATCGT 59.422 41.667 25.94 25.94 0.00 3.73
4803 5866 5.066893 TGGTATCAGCTTAGTTACGATCGTT 59.933 40.000 27.88 11.38 0.00 3.85
4804 5867 5.398711 GGTATCAGCTTAGTTACGATCGTTG 59.601 44.000 27.88 15.60 0.00 4.10
4805 5868 3.176708 TCAGCTTAGTTACGATCGTTGC 58.823 45.455 27.88 18.61 0.00 4.17
4806 5869 3.119602 TCAGCTTAGTTACGATCGTTGCT 60.120 43.478 27.88 24.13 0.00 3.91
4807 5870 3.612860 CAGCTTAGTTACGATCGTTGCTT 59.387 43.478 27.88 12.20 0.00 3.91
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 4.806775 ACGCGCTTGTGTATATGTCAATAA 59.193 37.500 5.73 0.00 33.74 1.40
26 27 2.858344 AGTGACTTCATAATACACGCGC 59.142 45.455 5.73 0.00 36.71 6.86
46 47 6.416455 TGTGCGACTTTTTGTTAAATTAGCAG 59.584 34.615 0.00 0.00 0.00 4.24
113 165 7.989416 TTCTCCTCCGTATAAACAAAAATGT 57.011 32.000 0.00 0.00 0.00 2.71
156 208 9.190858 CACTATGAGTAGCATAAGAGTTCATTC 57.809 37.037 0.00 0.00 38.92 2.67
159 211 6.040955 CCCACTATGAGTAGCATAAGAGTTCA 59.959 42.308 0.00 0.00 38.92 3.18
160 212 6.451393 CCCACTATGAGTAGCATAAGAGTTC 58.549 44.000 0.00 0.00 38.92 3.01
161 213 5.305644 CCCCACTATGAGTAGCATAAGAGTT 59.694 44.000 0.00 0.00 38.92 3.01
163 215 5.080337 TCCCCACTATGAGTAGCATAAGAG 58.920 45.833 0.00 0.00 38.92 2.85
164 216 5.074746 TCCCCACTATGAGTAGCATAAGA 57.925 43.478 0.00 0.00 38.92 2.10
165 217 4.835615 ACTCCCCACTATGAGTAGCATAAG 59.164 45.833 0.00 0.00 39.96 1.73
166 218 4.816126 ACTCCCCACTATGAGTAGCATAA 58.184 43.478 0.00 0.00 39.96 1.90
167 219 4.471078 ACTCCCCACTATGAGTAGCATA 57.529 45.455 0.00 0.00 39.96 3.14
168 220 3.336509 ACTCCCCACTATGAGTAGCAT 57.663 47.619 0.00 0.00 39.96 3.79
169 221 2.848678 ACTCCCCACTATGAGTAGCA 57.151 50.000 0.00 0.00 39.96 3.49
170 222 4.408276 TGATACTCCCCACTATGAGTAGC 58.592 47.826 7.72 7.72 45.86 3.58
171 223 9.344772 GTATATGATACTCCCCACTATGAGTAG 57.655 40.741 5.70 0.00 44.72 2.57
172 224 9.070210 AGTATATGATACTCCCCACTATGAGTA 57.930 37.037 2.23 2.23 45.36 2.59
173 225 7.945278 AGTATATGATACTCCCCACTATGAGT 58.055 38.462 0.00 0.00 43.85 3.41
174 226 9.922477 TTAGTATATGATACTCCCCACTATGAG 57.078 37.037 2.44 0.00 34.73 2.90
211 263 9.558396 GGAGGTAGTATCATACGCTAGTATTAT 57.442 37.037 0.00 0.00 41.33 1.28
212 264 8.542926 TGGAGGTAGTATCATACGCTAGTATTA 58.457 37.037 0.00 0.00 41.33 0.98
213 265 7.400439 TGGAGGTAGTATCATACGCTAGTATT 58.600 38.462 0.00 0.00 41.33 1.89
214 266 6.955364 TGGAGGTAGTATCATACGCTAGTAT 58.045 40.000 0.00 0.00 43.88 2.12
215 267 6.364568 TGGAGGTAGTATCATACGCTAGTA 57.635 41.667 0.00 0.00 37.24 1.82
216 268 5.238624 TGGAGGTAGTATCATACGCTAGT 57.761 43.478 0.00 0.00 0.00 2.57
217 269 7.860918 TTATGGAGGTAGTATCATACGCTAG 57.139 40.000 0.00 0.00 0.00 3.42
218 270 7.201794 GCATTATGGAGGTAGTATCATACGCTA 60.202 40.741 0.00 0.00 0.00 4.26
219 271 6.405953 GCATTATGGAGGTAGTATCATACGCT 60.406 42.308 0.00 0.00 0.00 5.07
220 272 5.749109 GCATTATGGAGGTAGTATCATACGC 59.251 44.000 0.00 0.00 0.00 4.42
221 273 6.863275 TGCATTATGGAGGTAGTATCATACG 58.137 40.000 0.00 0.00 0.00 3.06
222 274 9.751542 GTATGCATTATGGAGGTAGTATCATAC 57.248 37.037 3.54 0.00 0.00 2.39
223 275 9.715119 AGTATGCATTATGGAGGTAGTATCATA 57.285 33.333 3.54 0.00 0.00 2.15
224 276 8.615360 AGTATGCATTATGGAGGTAGTATCAT 57.385 34.615 3.54 0.00 0.00 2.45
225 277 9.715119 ATAGTATGCATTATGGAGGTAGTATCA 57.285 33.333 3.54 0.00 0.00 2.15
227 279 9.715119 TGATAGTATGCATTATGGAGGTAGTAT 57.285 33.333 3.54 0.00 0.00 2.12
228 280 9.715119 ATGATAGTATGCATTATGGAGGTAGTA 57.285 33.333 3.54 0.00 0.00 1.82
229 281 8.615360 ATGATAGTATGCATTATGGAGGTAGT 57.385 34.615 3.54 0.00 0.00 2.73
232 284 9.896645 CTTTATGATAGTATGCATTATGGAGGT 57.103 33.333 3.54 0.00 0.00 3.85
233 285 9.896645 ACTTTATGATAGTATGCATTATGGAGG 57.103 33.333 3.54 0.00 0.00 4.30
270 322 9.811995 GTCATGCATGGCAATAAATATAATCAT 57.188 29.630 26.04 0.00 43.62 2.45
271 323 8.804204 TGTCATGCATGGCAATAAATATAATCA 58.196 29.630 30.82 2.65 43.62 2.57
272 324 9.079833 GTGTCATGCATGGCAATAAATATAATC 57.920 33.333 34.01 14.19 44.94 1.75
273 325 8.586744 TGTGTCATGCATGGCAATAAATATAAT 58.413 29.630 34.01 0.00 44.94 1.28
274 326 7.949434 TGTGTCATGCATGGCAATAAATATAA 58.051 30.769 34.01 6.03 44.94 0.98
275 327 7.521871 TGTGTCATGCATGGCAATAAATATA 57.478 32.000 34.01 6.82 44.94 0.86
276 328 6.408107 TGTGTCATGCATGGCAATAAATAT 57.592 33.333 34.01 0.00 44.94 1.28
277 329 5.848833 TGTGTCATGCATGGCAATAAATA 57.151 34.783 34.01 14.13 44.94 1.40
278 330 4.739587 TGTGTCATGCATGGCAATAAAT 57.260 36.364 34.01 0.00 44.94 1.40
279 331 4.532314 TTGTGTCATGCATGGCAATAAA 57.468 36.364 34.01 24.20 44.94 1.40
280 332 4.021280 ACTTTGTGTCATGCATGGCAATAA 60.021 37.500 34.01 26.82 44.94 1.40
281 333 3.510753 ACTTTGTGTCATGCATGGCAATA 59.489 39.130 34.01 22.99 44.94 1.90
282 334 2.300723 ACTTTGTGTCATGCATGGCAAT 59.699 40.909 34.01 15.19 44.94 3.56
283 335 1.687660 ACTTTGTGTCATGCATGGCAA 59.312 42.857 34.01 25.74 44.94 4.52
284 336 1.330234 ACTTTGTGTCATGCATGGCA 58.670 45.000 29.45 29.45 44.86 4.92
285 337 2.733227 GCTACTTTGTGTCATGCATGGC 60.733 50.000 24.40 24.40 0.00 4.40
286 338 2.488937 TGCTACTTTGTGTCATGCATGG 59.511 45.455 25.97 10.76 0.00 3.66
287 339 3.835378 TGCTACTTTGTGTCATGCATG 57.165 42.857 21.07 21.07 0.00 4.06
288 340 4.036027 GCTATGCTACTTTGTGTCATGCAT 59.964 41.667 0.00 0.00 40.50 3.96
289 341 3.374988 GCTATGCTACTTTGTGTCATGCA 59.625 43.478 0.00 0.00 35.34 3.96
290 342 3.374988 TGCTATGCTACTTTGTGTCATGC 59.625 43.478 0.00 0.00 0.00 4.06
291 343 5.746307 ATGCTATGCTACTTTGTGTCATG 57.254 39.130 0.00 0.00 0.00 3.07
292 344 6.764308 AAATGCTATGCTACTTTGTGTCAT 57.236 33.333 0.00 0.00 0.00 3.06
293 345 7.174080 TGTTAAATGCTATGCTACTTTGTGTCA 59.826 33.333 0.00 0.00 0.00 3.58
294 346 7.526608 TGTTAAATGCTATGCTACTTTGTGTC 58.473 34.615 0.00 0.00 0.00 3.67
295 347 7.447374 TGTTAAATGCTATGCTACTTTGTGT 57.553 32.000 0.00 0.00 0.00 3.72
296 348 8.183536 TCATGTTAAATGCTATGCTACTTTGTG 58.816 33.333 0.00 0.00 0.00 3.33
297 349 8.279970 TCATGTTAAATGCTATGCTACTTTGT 57.720 30.769 0.00 0.00 0.00 2.83
301 353 9.170734 CCATATCATGTTAAATGCTATGCTACT 57.829 33.333 1.75 0.00 30.80 2.57
302 354 8.950210 ACCATATCATGTTAAATGCTATGCTAC 58.050 33.333 1.75 0.00 30.80 3.58
304 356 9.690913 ATACCATATCATGTTAAATGCTATGCT 57.309 29.630 1.75 0.00 30.80 3.79
305 357 9.941664 GATACCATATCATGTTAAATGCTATGC 57.058 33.333 1.75 0.00 30.80 3.14
309 361 9.672673 GGTAGATACCATATCATGTTAAATGCT 57.327 33.333 4.09 0.00 45.73 3.79
324 376 9.531158 GGTTAGAGTAACATAGGTAGATACCAT 57.469 37.037 11.51 0.89 43.30 3.55
325 377 7.946776 GGGTTAGAGTAACATAGGTAGATACCA 59.053 40.741 11.51 0.00 43.30 3.25
326 378 8.169393 AGGGTTAGAGTAACATAGGTAGATACC 58.831 40.741 0.43 0.43 42.24 2.73
327 379 9.230122 GAGGGTTAGAGTAACATAGGTAGATAC 57.770 40.741 0.00 0.00 40.39 2.24
328 380 9.180282 AGAGGGTTAGAGTAACATAGGTAGATA 57.820 37.037 0.00 0.00 40.39 1.98
329 381 8.059565 AGAGGGTTAGAGTAACATAGGTAGAT 57.940 38.462 0.00 0.00 40.39 1.98
330 382 7.350389 AGAGAGGGTTAGAGTAACATAGGTAGA 59.650 40.741 0.00 0.00 40.39 2.59
331 383 7.519927 AGAGAGGGTTAGAGTAACATAGGTAG 58.480 42.308 0.00 0.00 40.39 3.18
332 384 7.350389 AGAGAGAGGGTTAGAGTAACATAGGTA 59.650 40.741 0.00 0.00 40.39 3.08
333 385 6.160814 AGAGAGAGGGTTAGAGTAACATAGGT 59.839 42.308 0.00 0.00 40.39 3.08
334 386 6.607019 AGAGAGAGGGTTAGAGTAACATAGG 58.393 44.000 0.00 0.00 40.39 2.57
335 387 7.996644 AGAAGAGAGAGGGTTAGAGTAACATAG 59.003 40.741 0.00 0.00 40.39 2.23
336 388 7.874252 AGAAGAGAGAGGGTTAGAGTAACATA 58.126 38.462 0.00 0.00 40.39 2.29
337 389 6.737608 AGAAGAGAGAGGGTTAGAGTAACAT 58.262 40.000 0.00 0.00 40.39 2.71
338 390 6.142259 AGAAGAGAGAGGGTTAGAGTAACA 57.858 41.667 0.00 0.00 40.39 2.41
339 391 7.470935 AAAGAAGAGAGAGGGTTAGAGTAAC 57.529 40.000 0.00 0.00 37.94 2.50
340 392 9.771140 ATTAAAGAAGAGAGAGGGTTAGAGTAA 57.229 33.333 0.00 0.00 0.00 2.24
341 393 9.771140 AATTAAAGAAGAGAGAGGGTTAGAGTA 57.229 33.333 0.00 0.00 0.00 2.59
342 394 8.673456 AATTAAAGAAGAGAGAGGGTTAGAGT 57.327 34.615 0.00 0.00 0.00 3.24
344 396 9.771140 ACTAATTAAAGAAGAGAGAGGGTTAGA 57.229 33.333 0.00 0.00 0.00 2.10
347 399 7.608376 GCAACTAATTAAAGAAGAGAGAGGGTT 59.392 37.037 0.00 0.00 0.00 4.11
348 400 7.106890 GCAACTAATTAAAGAAGAGAGAGGGT 58.893 38.462 0.00 0.00 0.00 4.34
349 401 6.540551 GGCAACTAATTAAAGAAGAGAGAGGG 59.459 42.308 0.00 0.00 0.00 4.30
350 402 7.106239 TGGCAACTAATTAAAGAAGAGAGAGG 58.894 38.462 0.00 0.00 37.61 3.69
351 403 8.610896 CATGGCAACTAATTAAAGAAGAGAGAG 58.389 37.037 0.00 0.00 37.61 3.20
352 404 8.103305 ACATGGCAACTAATTAAAGAAGAGAGA 58.897 33.333 0.00 0.00 37.61 3.10
353 405 8.273780 ACATGGCAACTAATTAAAGAAGAGAG 57.726 34.615 0.00 0.00 37.61 3.20
354 406 9.733556 TTACATGGCAACTAATTAAAGAAGAGA 57.266 29.630 0.00 0.00 37.61 3.10
355 407 9.994432 CTTACATGGCAACTAATTAAAGAAGAG 57.006 33.333 0.00 0.00 37.61 2.85
356 408 8.458843 GCTTACATGGCAACTAATTAAAGAAGA 58.541 33.333 0.00 0.00 37.61 2.87
357 409 8.243426 TGCTTACATGGCAACTAATTAAAGAAG 58.757 33.333 0.00 0.00 36.71 2.85
358 410 8.116651 TGCTTACATGGCAACTAATTAAAGAA 57.883 30.769 0.00 0.00 36.71 2.52
359 411 7.695480 TGCTTACATGGCAACTAATTAAAGA 57.305 32.000 0.00 0.00 36.71 2.52
375 427 5.491070 TGAGACTAGCAAACATGCTTACAT 58.509 37.500 8.79 0.00 43.52 2.29
376 428 4.893608 TGAGACTAGCAAACATGCTTACA 58.106 39.130 8.79 0.94 43.52 2.41
377 429 5.409826 ACTTGAGACTAGCAAACATGCTTAC 59.590 40.000 8.79 1.80 43.52 2.34
378 430 5.551233 ACTTGAGACTAGCAAACATGCTTA 58.449 37.500 8.79 0.00 43.52 3.09
379 431 4.392940 ACTTGAGACTAGCAAACATGCTT 58.607 39.130 8.79 0.00 43.52 3.91
381 433 4.690748 TGTACTTGAGACTAGCAAACATGC 59.309 41.667 0.00 0.00 0.00 4.06
382 434 6.369890 ACATGTACTTGAGACTAGCAAACATG 59.630 38.462 15.13 16.63 43.39 3.21
383 435 6.467677 ACATGTACTTGAGACTAGCAAACAT 58.532 36.000 15.13 0.00 30.77 2.71
384 436 5.853936 ACATGTACTTGAGACTAGCAAACA 58.146 37.500 15.13 0.00 0.00 2.83
385 437 6.787085 AACATGTACTTGAGACTAGCAAAC 57.213 37.500 15.13 0.00 0.00 2.93
386 438 6.872020 GGTAACATGTACTTGAGACTAGCAAA 59.128 38.462 15.13 0.00 0.00 3.68
387 439 6.395629 GGTAACATGTACTTGAGACTAGCAA 58.604 40.000 15.13 0.00 0.00 3.91
388 440 5.392703 CGGTAACATGTACTTGAGACTAGCA 60.393 44.000 15.13 0.00 0.00 3.49
389 441 5.035443 CGGTAACATGTACTTGAGACTAGC 58.965 45.833 15.13 8.93 0.00 3.42
390 442 5.125097 ACCGGTAACATGTACTTGAGACTAG 59.875 44.000 4.49 9.52 0.00 2.57
391 443 5.012239 ACCGGTAACATGTACTTGAGACTA 58.988 41.667 4.49 0.00 0.00 2.59
392 444 3.830755 ACCGGTAACATGTACTTGAGACT 59.169 43.478 4.49 0.54 0.00 3.24
393 445 4.184079 ACCGGTAACATGTACTTGAGAC 57.816 45.455 4.49 11.16 0.00 3.36
394 446 4.877378 AACCGGTAACATGTACTTGAGA 57.123 40.909 8.00 0.28 0.00 3.27
395 447 6.103997 ACATAACCGGTAACATGTACTTGAG 58.896 40.000 21.51 1.49 30.04 3.02
396 448 6.040209 ACATAACCGGTAACATGTACTTGA 57.960 37.500 21.51 0.00 30.04 3.02
397 449 6.730960 AACATAACCGGTAACATGTACTTG 57.269 37.500 22.56 7.18 31.55 3.16
398 450 7.614494 AGTAACATAACCGGTAACATGTACTT 58.386 34.615 22.56 13.74 31.55 2.24
399 451 7.174107 AGTAACATAACCGGTAACATGTACT 57.826 36.000 22.56 20.71 31.55 2.73
400 452 6.476706 GGAGTAACATAACCGGTAACATGTAC 59.523 42.308 22.56 19.49 31.55 2.90
401 453 6.406849 GGGAGTAACATAACCGGTAACATGTA 60.407 42.308 22.56 6.82 31.55 2.29
402 454 5.422145 GGAGTAACATAACCGGTAACATGT 58.578 41.667 18.71 18.71 33.12 3.21
403 455 4.812626 GGGAGTAACATAACCGGTAACATG 59.187 45.833 8.00 14.59 0.00 3.21
404 456 4.470664 TGGGAGTAACATAACCGGTAACAT 59.529 41.667 8.00 0.00 0.00 2.71
405 457 3.837146 TGGGAGTAACATAACCGGTAACA 59.163 43.478 8.00 0.00 0.00 2.41
406 458 4.081476 AGTGGGAGTAACATAACCGGTAAC 60.081 45.833 8.00 0.00 0.00 2.50
407 459 4.095946 AGTGGGAGTAACATAACCGGTAA 58.904 43.478 8.00 0.00 0.00 2.85
408 460 3.711863 AGTGGGAGTAACATAACCGGTA 58.288 45.455 8.00 0.00 0.00 4.02
409 461 2.543635 AGTGGGAGTAACATAACCGGT 58.456 47.619 0.00 0.00 0.00 5.28
410 462 4.502604 CCATAGTGGGAGTAACATAACCGG 60.503 50.000 0.00 0.00 32.67 5.28
411 463 4.628074 CCATAGTGGGAGTAACATAACCG 58.372 47.826 0.00 0.00 32.67 4.44
412 464 4.386711 GCCATAGTGGGAGTAACATAACC 58.613 47.826 0.00 0.00 38.19 2.85
413 465 4.141574 TGGCCATAGTGGGAGTAACATAAC 60.142 45.833 0.00 0.00 38.19 1.89
414 466 4.041464 TGGCCATAGTGGGAGTAACATAA 58.959 43.478 0.00 0.00 38.19 1.90
415 467 3.659841 TGGCCATAGTGGGAGTAACATA 58.340 45.455 0.00 0.00 38.19 2.29
416 468 2.487775 TGGCCATAGTGGGAGTAACAT 58.512 47.619 0.00 0.00 38.19 2.71
417 469 1.959710 TGGCCATAGTGGGAGTAACA 58.040 50.000 0.00 0.00 38.19 2.41
418 470 2.640184 GTTGGCCATAGTGGGAGTAAC 58.360 52.381 6.09 0.00 38.19 2.50
419 471 1.562475 GGTTGGCCATAGTGGGAGTAA 59.438 52.381 6.09 0.00 38.19 2.24
420 472 1.209621 GGTTGGCCATAGTGGGAGTA 58.790 55.000 6.09 0.00 38.19 2.59
421 473 0.550147 AGGTTGGCCATAGTGGGAGT 60.550 55.000 6.09 0.00 38.19 3.85
422 474 0.625849 AAGGTTGGCCATAGTGGGAG 59.374 55.000 6.09 0.00 38.19 4.30
423 475 1.974028 TAAGGTTGGCCATAGTGGGA 58.026 50.000 6.09 0.00 38.19 4.37
424 476 2.586425 CATAAGGTTGGCCATAGTGGG 58.414 52.381 6.09 0.00 38.19 4.61
425 477 1.956477 GCATAAGGTTGGCCATAGTGG 59.044 52.381 6.09 0.00 41.55 4.00
426 478 2.653726 TGCATAAGGTTGGCCATAGTG 58.346 47.619 6.09 1.28 37.19 2.74
427 479 3.380471 TTGCATAAGGTTGGCCATAGT 57.620 42.857 6.09 0.00 37.19 2.12
428 480 4.685924 CTTTTGCATAAGGTTGGCCATAG 58.314 43.478 6.09 0.00 37.19 2.23
429 481 3.118811 GCTTTTGCATAAGGTTGGCCATA 60.119 43.478 17.12 0.00 46.58 2.74
430 482 2.355007 GCTTTTGCATAAGGTTGGCCAT 60.355 45.455 17.12 0.00 46.58 4.40
431 483 1.001860 GCTTTTGCATAAGGTTGGCCA 59.998 47.619 17.12 0.00 46.58 5.36
432 484 1.725641 GCTTTTGCATAAGGTTGGCC 58.274 50.000 17.12 0.00 46.58 5.36
558 610 2.484264 GGTCATATTTGCTATGTCCGGC 59.516 50.000 0.00 0.00 36.65 6.13
576 628 1.427819 CGCGTGCATTTAAGGGGTC 59.572 57.895 0.00 0.00 0.00 4.46
634 686 2.017049 GAAAAGTATGGCTGCACGGAT 58.983 47.619 0.50 0.00 0.00 4.18
643 695 8.992835 ATGAGAAGAAAAATGAAAAGTATGGC 57.007 30.769 0.00 0.00 0.00 4.40
687 739 5.728471 TCTCTCTTCATCTTGACCAATCAC 58.272 41.667 0.00 0.00 33.38 3.06
720 772 6.426633 CCACCTCTCTCTTTCTTTCTTTCTTC 59.573 42.308 0.00 0.00 0.00 2.87
721 773 6.126623 ACCACCTCTCTCTTTCTTTCTTTCTT 60.127 38.462 0.00 0.00 0.00 2.52
722 774 5.368230 ACCACCTCTCTCTTTCTTTCTTTCT 59.632 40.000 0.00 0.00 0.00 2.52
723 775 5.616270 ACCACCTCTCTCTTTCTTTCTTTC 58.384 41.667 0.00 0.00 0.00 2.62
724 776 5.616270 GACCACCTCTCTCTTTCTTTCTTT 58.384 41.667 0.00 0.00 0.00 2.52
725 777 4.262249 CGACCACCTCTCTCTTTCTTTCTT 60.262 45.833 0.00 0.00 0.00 2.52
726 778 3.257127 CGACCACCTCTCTCTTTCTTTCT 59.743 47.826 0.00 0.00 0.00 2.52
727 779 3.580731 CGACCACCTCTCTCTTTCTTTC 58.419 50.000 0.00 0.00 0.00 2.62
728 780 2.300437 CCGACCACCTCTCTCTTTCTTT 59.700 50.000 0.00 0.00 0.00 2.52
729 781 1.896465 CCGACCACCTCTCTCTTTCTT 59.104 52.381 0.00 0.00 0.00 2.52
730 782 1.551452 CCGACCACCTCTCTCTTTCT 58.449 55.000 0.00 0.00 0.00 2.52
731 783 0.533032 CCCGACCACCTCTCTCTTTC 59.467 60.000 0.00 0.00 0.00 2.62
732 784 0.178929 ACCCGACCACCTCTCTCTTT 60.179 55.000 0.00 0.00 0.00 2.52
733 785 0.702902 TACCCGACCACCTCTCTCTT 59.297 55.000 0.00 0.00 0.00 2.85
734 786 0.256464 CTACCCGACCACCTCTCTCT 59.744 60.000 0.00 0.00 0.00 3.10
735 787 0.752376 CCTACCCGACCACCTCTCTC 60.752 65.000 0.00 0.00 0.00 3.20
736 788 1.306970 CCTACCCGACCACCTCTCT 59.693 63.158 0.00 0.00 0.00 3.10
737 789 1.757340 CCCTACCCGACCACCTCTC 60.757 68.421 0.00 0.00 0.00 3.20
813 865 8.700051 CATATCCATCTTAAATACGAGGAGGAT 58.300 37.037 0.00 0.00 34.07 3.24
815 867 8.067751 TCATATCCATCTTAAATACGAGGAGG 57.932 38.462 0.00 0.00 0.00 4.30
819 871 7.841956 ACCCTCATATCCATCTTAAATACGAG 58.158 38.462 0.00 0.00 0.00 4.18
822 874 8.515414 GCAAACCCTCATATCCATCTTAAATAC 58.485 37.037 0.00 0.00 0.00 1.89
839 891 3.056328 GGCTGTCCGCAAACCCTC 61.056 66.667 0.00 0.00 41.67 4.30
884 936 2.021457 AGGAAAAACGTGACCCAACTG 58.979 47.619 0.00 0.00 0.00 3.16
943 995 1.828979 TAAACCATCCCTCAAACGCC 58.171 50.000 0.00 0.00 0.00 5.68
948 1000 3.245122 GGACACCTTAAACCATCCCTCAA 60.245 47.826 0.00 0.00 0.00 3.02
962 1014 1.338769 GCATCTACAACCGGACACCTT 60.339 52.381 9.46 0.00 0.00 3.50
1223 1275 3.983044 CAGTCCTGCCCTAGTAGTTTT 57.017 47.619 0.00 0.00 0.00 2.43
1278 1330 5.918608 AGCACCTTGTGTCCTAGTTATATG 58.081 41.667 0.00 0.00 35.75 1.78
1775 1884 1.135575 GCTCTTCCAAAGTTGCCGATG 60.136 52.381 0.00 0.00 0.00 3.84
1776 1885 1.168714 GCTCTTCCAAAGTTGCCGAT 58.831 50.000 0.00 0.00 0.00 4.18
2075 2184 5.124936 CACCAAGATCAGAAGCATCAAATGA 59.875 40.000 0.00 0.00 0.00 2.57
2216 2325 5.048364 TGTTTTTGCCACATAGTCCATGTAC 60.048 40.000 0.00 0.00 46.47 2.90
2245 2354 4.881273 TCGAGCTTTGGTATGTATTTGCAT 59.119 37.500 0.00 0.00 0.00 3.96
2413 2606 3.181491 GCTGGTAAAAGTCAGTTTGTGCA 60.181 43.478 0.00 0.00 33.81 4.57
2691 2884 1.737236 CCTTGAACATCCGCGATGAAA 59.263 47.619 20.36 12.34 42.09 2.69
3742 4617 4.159321 TCCACAAGTGAAAGCATTGTTTCA 59.841 37.500 0.94 9.09 42.79 2.69
3748 4623 6.996509 ACATTATTCCACAAGTGAAAGCATT 58.003 32.000 0.94 0.00 0.00 3.56
3749 4624 6.594788 ACATTATTCCACAAGTGAAAGCAT 57.405 33.333 0.94 0.00 0.00 3.79
4449 5448 6.152323 CCCTGTCATTGTTGATTCTTCTGAAT 59.848 38.462 0.00 0.00 44.79 2.57
4450 5449 5.474532 CCCTGTCATTGTTGATTCTTCTGAA 59.525 40.000 0.00 0.00 33.56 3.02
4451 5450 5.005740 CCCTGTCATTGTTGATTCTTCTGA 58.994 41.667 0.00 0.00 33.56 3.27
4612 5675 0.896226 GTCTAACACTCCTTCCCGCT 59.104 55.000 0.00 0.00 0.00 5.52
4640 5703 9.730705 AGGTATACAGAAGCTATACGTAATACA 57.269 33.333 5.01 0.00 30.61 2.29
4644 5707 9.003658 GGTTAGGTATACAGAAGCTATACGTAA 57.996 37.037 5.01 11.81 36.25 3.18
4645 5708 7.331934 CGGTTAGGTATACAGAAGCTATACGTA 59.668 40.741 5.01 0.00 31.11 3.57
4646 5709 6.148480 CGGTTAGGTATACAGAAGCTATACGT 59.852 42.308 5.01 0.00 32.56 3.57
4647 5710 6.148480 ACGGTTAGGTATACAGAAGCTATACG 59.852 42.308 5.01 6.76 34.96 3.06
4648 5711 7.040823 ACACGGTTAGGTATACAGAAGCTATAC 60.041 40.741 5.01 0.00 0.00 1.47
4649 5712 7.000472 ACACGGTTAGGTATACAGAAGCTATA 59.000 38.462 5.01 0.00 0.00 1.31
4650 5713 5.832060 ACACGGTTAGGTATACAGAAGCTAT 59.168 40.000 5.01 0.00 0.00 2.97
4651 5714 5.195940 ACACGGTTAGGTATACAGAAGCTA 58.804 41.667 5.01 0.00 0.00 3.32
4652 5715 4.021916 ACACGGTTAGGTATACAGAAGCT 58.978 43.478 5.01 0.00 0.00 3.74
4653 5716 4.382345 ACACGGTTAGGTATACAGAAGC 57.618 45.455 5.01 6.65 0.00 3.86
4654 5717 6.040166 ACCATACACGGTTAGGTATACAGAAG 59.960 42.308 5.01 0.00 34.91 2.85
4655 5718 5.893255 ACCATACACGGTTAGGTATACAGAA 59.107 40.000 5.01 0.00 34.91 3.02
4656 5719 5.448654 ACCATACACGGTTAGGTATACAGA 58.551 41.667 5.01 0.00 34.91 3.41
4657 5720 5.779529 ACCATACACGGTTAGGTATACAG 57.220 43.478 5.01 0.00 34.91 2.74
4668 5731 4.563140 ACAAATCCTAACCATACACGGT 57.437 40.909 0.00 0.00 42.71 4.83
4669 5732 5.667466 AGTACAAATCCTAACCATACACGG 58.333 41.667 0.00 0.00 0.00 4.94
4670 5733 7.118680 ACAAAGTACAAATCCTAACCATACACG 59.881 37.037 0.00 0.00 0.00 4.49
4671 5734 8.331730 ACAAAGTACAAATCCTAACCATACAC 57.668 34.615 0.00 0.00 0.00 2.90
4672 5735 9.439500 GTACAAAGTACAAATCCTAACCATACA 57.561 33.333 0.00 0.00 0.00 2.29
4673 5736 8.886719 GGTACAAAGTACAAATCCTAACCATAC 58.113 37.037 9.27 0.00 0.00 2.39
4674 5737 8.828751 AGGTACAAAGTACAAATCCTAACCATA 58.171 33.333 9.27 0.00 0.00 2.74
4675 5738 7.696017 AGGTACAAAGTACAAATCCTAACCAT 58.304 34.615 9.27 0.00 0.00 3.55
4676 5739 7.081857 AGGTACAAAGTACAAATCCTAACCA 57.918 36.000 9.27 0.00 0.00 3.67
4677 5740 9.106070 CATAGGTACAAAGTACAAATCCTAACC 57.894 37.037 9.27 0.00 31.51 2.85
4678 5741 9.662947 ACATAGGTACAAAGTACAAATCCTAAC 57.337 33.333 9.27 0.00 31.51 2.34
4681 5744 9.662947 GTTACATAGGTACAAAGTACAAATCCT 57.337 33.333 9.27 0.00 0.00 3.24
4682 5745 9.439500 TGTTACATAGGTACAAAGTACAAATCC 57.561 33.333 9.27 0.00 0.00 3.01
4684 5747 9.223099 GGTGTTACATAGGTACAAAGTACAAAT 57.777 33.333 9.27 0.06 0.00 2.32
4685 5748 8.209584 TGGTGTTACATAGGTACAAAGTACAAA 58.790 33.333 9.27 0.00 0.00 2.83
4686 5749 7.733969 TGGTGTTACATAGGTACAAAGTACAA 58.266 34.615 9.27 0.00 0.00 2.41
4687 5750 7.300556 TGGTGTTACATAGGTACAAAGTACA 57.699 36.000 9.27 0.00 0.00 2.90
4688 5751 8.782339 ATTGGTGTTACATAGGTACAAAGTAC 57.218 34.615 0.00 0.00 0.00 2.73
4704 5767 9.414295 GCGTGAGTTGTATATATATTGGTGTTA 57.586 33.333 0.00 0.00 0.00 2.41
4705 5768 7.386848 GGCGTGAGTTGTATATATATTGGTGTT 59.613 37.037 0.00 0.00 0.00 3.32
4706 5769 6.872020 GGCGTGAGTTGTATATATATTGGTGT 59.128 38.462 0.00 0.00 0.00 4.16
4707 5770 6.871492 TGGCGTGAGTTGTATATATATTGGTG 59.129 38.462 0.00 0.00 0.00 4.17
4708 5771 6.872020 GTGGCGTGAGTTGTATATATATTGGT 59.128 38.462 0.00 0.00 0.00 3.67
4709 5772 6.312918 GGTGGCGTGAGTTGTATATATATTGG 59.687 42.308 0.00 0.00 0.00 3.16
4710 5773 6.312918 GGGTGGCGTGAGTTGTATATATATTG 59.687 42.308 0.00 0.00 0.00 1.90
4711 5774 6.403878 GGGTGGCGTGAGTTGTATATATATT 58.596 40.000 0.00 0.00 0.00 1.28
4712 5775 5.105064 GGGGTGGCGTGAGTTGTATATATAT 60.105 44.000 0.00 0.00 0.00 0.86
4713 5776 4.221262 GGGGTGGCGTGAGTTGTATATATA 59.779 45.833 0.00 0.00 0.00 0.86
4714 5777 3.007614 GGGGTGGCGTGAGTTGTATATAT 59.992 47.826 0.00 0.00 0.00 0.86
4715 5778 2.366266 GGGGTGGCGTGAGTTGTATATA 59.634 50.000 0.00 0.00 0.00 0.86
4716 5779 1.140252 GGGGTGGCGTGAGTTGTATAT 59.860 52.381 0.00 0.00 0.00 0.86
4717 5780 0.538118 GGGGTGGCGTGAGTTGTATA 59.462 55.000 0.00 0.00 0.00 1.47
4718 5781 1.198759 AGGGGTGGCGTGAGTTGTAT 61.199 55.000 0.00 0.00 0.00 2.29
4719 5782 0.542467 TAGGGGTGGCGTGAGTTGTA 60.542 55.000 0.00 0.00 0.00 2.41
4720 5783 1.827399 CTAGGGGTGGCGTGAGTTGT 61.827 60.000 0.00 0.00 0.00 3.32
4721 5784 1.079127 CTAGGGGTGGCGTGAGTTG 60.079 63.158 0.00 0.00 0.00 3.16
4722 5785 1.229082 TCTAGGGGTGGCGTGAGTT 60.229 57.895 0.00 0.00 0.00 3.01
4723 5786 1.682684 CTCTAGGGGTGGCGTGAGT 60.683 63.158 0.00 0.00 0.00 3.41
4724 5787 2.427245 CCTCTAGGGGTGGCGTGAG 61.427 68.421 0.00 0.00 0.00 3.51
4725 5788 2.363795 CCTCTAGGGGTGGCGTGA 60.364 66.667 0.00 0.00 0.00 4.35
4735 5798 0.249657 GAATCGCACAGCCCTCTAGG 60.250 60.000 0.00 0.00 39.47 3.02
4736 5799 0.461548 TGAATCGCACAGCCCTCTAG 59.538 55.000 0.00 0.00 0.00 2.43
4737 5800 1.069204 GATGAATCGCACAGCCCTCTA 59.931 52.381 0.00 0.00 0.00 2.43
4738 5801 0.179062 GATGAATCGCACAGCCCTCT 60.179 55.000 0.00 0.00 0.00 3.69
4739 5802 0.462581 TGATGAATCGCACAGCCCTC 60.463 55.000 0.00 0.00 0.00 4.30
4740 5803 0.035152 TTGATGAATCGCACAGCCCT 60.035 50.000 0.00 0.00 0.00 5.19
4741 5804 0.810648 TTTGATGAATCGCACAGCCC 59.189 50.000 0.00 0.00 0.00 5.19
4742 5805 2.162208 TCTTTTGATGAATCGCACAGCC 59.838 45.455 0.00 0.00 0.00 4.85
4743 5806 3.476295 TCTTTTGATGAATCGCACAGC 57.524 42.857 0.00 0.00 0.00 4.40
4744 5807 5.039480 ACTTCTTTTGATGAATCGCACAG 57.961 39.130 0.00 0.00 0.00 3.66
4745 5808 4.756642 AGACTTCTTTTGATGAATCGCACA 59.243 37.500 0.00 0.00 0.00 4.57
4746 5809 5.288543 AGACTTCTTTTGATGAATCGCAC 57.711 39.130 0.00 0.00 0.00 5.34
4747 5810 5.062183 CGTAGACTTCTTTTGATGAATCGCA 59.938 40.000 0.00 0.00 0.00 5.10
4748 5811 5.062308 ACGTAGACTTCTTTTGATGAATCGC 59.938 40.000 0.00 0.00 0.00 4.58
4749 5812 6.528423 AGACGTAGACTTCTTTTGATGAATCG 59.472 38.462 0.00 0.00 0.00 3.34
4750 5813 7.820044 AGACGTAGACTTCTTTTGATGAATC 57.180 36.000 0.00 0.00 0.00 2.52
4751 5814 9.877178 ATTAGACGTAGACTTCTTTTGATGAAT 57.123 29.630 0.00 0.00 32.98 2.57
4755 5818 9.751542 CCATATTAGACGTAGACTTCTTTTGAT 57.248 33.333 0.00 0.00 32.98 2.57
4756 5819 8.746530 ACCATATTAGACGTAGACTTCTTTTGA 58.253 33.333 0.00 0.00 32.98 2.69
4757 5820 8.928270 ACCATATTAGACGTAGACTTCTTTTG 57.072 34.615 0.00 0.00 32.98 2.44
4760 5823 9.570468 TGATACCATATTAGACGTAGACTTCTT 57.430 33.333 0.00 0.00 32.98 2.52
4761 5824 9.221933 CTGATACCATATTAGACGTAGACTTCT 57.778 37.037 0.00 0.00 32.98 2.85
4762 5825 7.964011 GCTGATACCATATTAGACGTAGACTTC 59.036 40.741 0.00 0.00 32.98 3.01
4763 5826 7.666388 AGCTGATACCATATTAGACGTAGACTT 59.334 37.037 0.00 0.00 32.98 3.01
4764 5827 7.169591 AGCTGATACCATATTAGACGTAGACT 58.830 38.462 0.00 0.00 36.09 3.24
4765 5828 7.380431 AGCTGATACCATATTAGACGTAGAC 57.620 40.000 0.00 0.00 0.00 2.59
4766 5829 7.997773 AAGCTGATACCATATTAGACGTAGA 57.002 36.000 0.00 0.00 0.00 2.59
4767 5830 8.948145 ACTAAGCTGATACCATATTAGACGTAG 58.052 37.037 0.00 0.00 30.73 3.51
4768 5831 8.859236 ACTAAGCTGATACCATATTAGACGTA 57.141 34.615 0.00 0.00 30.73 3.57
4769 5832 7.762588 ACTAAGCTGATACCATATTAGACGT 57.237 36.000 0.00 0.00 30.73 4.34
4770 5833 9.557338 GTAACTAAGCTGATACCATATTAGACG 57.443 37.037 0.00 0.00 30.73 4.18
4771 5834 9.557338 CGTAACTAAGCTGATACCATATTAGAC 57.443 37.037 0.00 0.00 30.73 2.59
4772 5835 9.511272 TCGTAACTAAGCTGATACCATATTAGA 57.489 33.333 0.00 0.00 30.73 2.10
4775 5838 7.968956 CGATCGTAACTAAGCTGATACCATATT 59.031 37.037 7.03 0.00 0.00 1.28
4776 5839 7.120873 ACGATCGTAACTAAGCTGATACCATAT 59.879 37.037 21.32 0.00 0.00 1.78
4777 5840 6.429078 ACGATCGTAACTAAGCTGATACCATA 59.571 38.462 21.32 0.00 0.00 2.74
4778 5841 5.241064 ACGATCGTAACTAAGCTGATACCAT 59.759 40.000 21.32 0.00 0.00 3.55
4779 5842 4.577693 ACGATCGTAACTAAGCTGATACCA 59.422 41.667 21.32 0.00 0.00 3.25
4780 5843 5.105834 ACGATCGTAACTAAGCTGATACC 57.894 43.478 21.32 0.00 0.00 2.73
4781 5844 5.108330 GCAACGATCGTAACTAAGCTGATAC 60.108 44.000 23.04 0.00 0.00 2.24
4782 5845 4.974275 GCAACGATCGTAACTAAGCTGATA 59.026 41.667 23.04 0.00 0.00 2.15
4783 5846 3.797256 GCAACGATCGTAACTAAGCTGAT 59.203 43.478 23.04 0.00 0.00 2.90
4784 5847 3.119602 AGCAACGATCGTAACTAAGCTGA 60.120 43.478 23.04 0.00 0.00 4.26
4785 5848 3.179830 AGCAACGATCGTAACTAAGCTG 58.820 45.455 23.04 14.22 0.00 4.24
4786 5849 3.505464 AGCAACGATCGTAACTAAGCT 57.495 42.857 23.04 19.10 0.00 3.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.