Multiple sequence alignment - TraesCS7D01G124900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G124900 chr7D 100.000 4463 0 0 1 4463 78212106 78207644 0.000000e+00 8242.0
1 TraesCS7D01G124900 chr7D 83.657 2778 364 48 1027 3760 78302577 78299846 0.000000e+00 2532.0
2 TraesCS7D01G124900 chr7D 85.947 1537 197 10 2062 3589 78308160 78306634 0.000000e+00 1624.0
3 TraesCS7D01G124900 chr7B 95.639 3761 122 19 715 4463 25632549 25628819 0.000000e+00 5999.0
4 TraesCS7D01G124900 chr7B 84.472 2634 353 32 968 3584 25655779 25653185 0.000000e+00 2547.0
5 TraesCS7D01G124900 chr7B 85.425 1530 203 10 2062 3589 25887466 25888977 0.000000e+00 1572.0
6 TraesCS7D01G124900 chr7B 83.636 1100 146 25 935 2014 25886375 25887460 0.000000e+00 1003.0
7 TraesCS7D01G124900 chr7B 88.550 655 75 0 2829 3483 25663476 25662822 0.000000e+00 795.0
8 TraesCS7D01G124900 chr7B 84.595 740 110 4 2062 2799 25664207 25663470 0.000000e+00 732.0
9 TraesCS7D01G124900 chr7B 83.860 285 32 6 305 581 25634616 25634338 4.430000e-65 259.0
10 TraesCS7D01G124900 chr7B 83.562 146 21 3 4319 4463 25890152 25890295 2.800000e-27 134.0
11 TraesCS7D01G124900 chr7A 95.218 3618 141 10 874 4463 81642445 81638832 0.000000e+00 5694.0
12 TraesCS7D01G124900 chr7A 84.032 2793 370 43 1159 3907 81769734 81766974 0.000000e+00 2617.0
13 TraesCS7D01G124900 chr7A 86.820 1434 178 8 2062 3486 81777036 81775605 0.000000e+00 1591.0
14 TraesCS7D01G124900 chr7A 92.063 63 3 2 797 859 81642499 81642439 2.210000e-13 87.9
15 TraesCS7D01G124900 chr2A 100.000 33 0 0 490 522 583827406 583827374 1.340000e-05 62.1
16 TraesCS7D01G124900 chr1D 100.000 30 0 0 487 516 4245608 4245579 6.240000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G124900 chr7D 78207644 78212106 4462 True 8242.00 8242 100.000000 1 4463 1 chr7D.!!$R1 4462
1 TraesCS7D01G124900 chr7D 78299846 78302577 2731 True 2532.00 2532 83.657000 1027 3760 1 chr7D.!!$R2 2733
2 TraesCS7D01G124900 chr7D 78306634 78308160 1526 True 1624.00 1624 85.947000 2062 3589 1 chr7D.!!$R3 1527
3 TraesCS7D01G124900 chr7B 25628819 25634616 5797 True 3129.00 5999 89.749500 305 4463 2 chr7B.!!$R2 4158
4 TraesCS7D01G124900 chr7B 25653185 25655779 2594 True 2547.00 2547 84.472000 968 3584 1 chr7B.!!$R1 2616
5 TraesCS7D01G124900 chr7B 25886375 25890295 3920 False 903.00 1572 84.207667 935 4463 3 chr7B.!!$F1 3528
6 TraesCS7D01G124900 chr7B 25662822 25664207 1385 True 763.50 795 86.572500 2062 3483 2 chr7B.!!$R3 1421
7 TraesCS7D01G124900 chr7A 81638832 81642499 3667 True 2890.95 5694 93.640500 797 4463 2 chr7A.!!$R3 3666
8 TraesCS7D01G124900 chr7A 81766974 81769734 2760 True 2617.00 2617 84.032000 1159 3907 1 chr7A.!!$R1 2748
9 TraesCS7D01G124900 chr7A 81775605 81777036 1431 True 1591.00 1591 86.820000 2062 3486 1 chr7A.!!$R2 1424

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
41 42 0.041312 CAAAGACGAACCAGTTGGCG 60.041 55.0 0.00 0.00 39.32 5.69 F
88 89 0.109964 TGCGATTTGCTACAAACGGC 60.110 50.0 13.05 11.22 46.63 5.68 F
89 90 0.168128 GCGATTTGCTACAAACGGCT 59.832 50.0 13.05 0.00 41.73 5.52 F
281 282 0.172578 TCGACAGGTCTTATGCACGG 59.827 55.0 0.00 0.00 0.00 4.94 F
643 2257 0.179081 ATCTAAAACGGAGCTCGGCC 60.179 55.0 20.22 0.02 44.45 6.13 F
2324 4055 0.111253 CCCAGGAGGTTGCTGTCTTT 59.889 55.0 0.00 0.00 33.66 2.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1860 3555 0.902531 TCCAAGAGACCGACCAATCC 59.097 55.000 0.00 0.00 0.0 3.01 R
2014 3709 1.268352 TGTCTTGTTTACATTGGGCGC 59.732 47.619 0.00 0.00 0.0 6.53 R
2039 3734 1.478916 GTCTTCTCCTGTAGTCCCAGC 59.521 57.143 0.00 0.00 0.0 4.85 R
2047 3742 2.325484 TGCCTTGTGTCTTCTCCTGTA 58.675 47.619 0.00 0.00 0.0 2.74 R
2620 4351 3.107601 CTCCTGATCCACCACTTCCTAA 58.892 50.000 0.00 0.00 0.0 2.69 R
3890 6431 1.856265 GCCTAACACTGGTGCACTGC 61.856 60.000 17.98 0.83 0.0 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.913335 ATCTTTGCTCGGTTCGTATAGA 57.087 40.909 0.00 0.00 0.00 1.98
22 23 4.025015 TCTTTGCTCGGTTCGTATAGAC 57.975 45.455 0.00 0.00 0.00 2.59
23 24 3.441222 TCTTTGCTCGGTTCGTATAGACA 59.559 43.478 0.00 0.00 0.00 3.41
24 25 3.853831 TTGCTCGGTTCGTATAGACAA 57.146 42.857 0.00 0.00 0.00 3.18
25 26 3.853831 TGCTCGGTTCGTATAGACAAA 57.146 42.857 0.00 0.00 0.00 2.83
26 27 3.766151 TGCTCGGTTCGTATAGACAAAG 58.234 45.455 0.00 0.00 0.00 2.77
27 28 3.441222 TGCTCGGTTCGTATAGACAAAGA 59.559 43.478 0.00 0.00 0.00 2.52
28 29 3.790288 GCTCGGTTCGTATAGACAAAGAC 59.210 47.826 0.00 0.00 0.00 3.01
29 30 4.007282 TCGGTTCGTATAGACAAAGACG 57.993 45.455 0.00 0.00 36.66 4.18
30 31 3.684305 TCGGTTCGTATAGACAAAGACGA 59.316 43.478 0.00 0.00 42.17 4.20
34 35 5.375417 TTCGTATAGACAAAGACGAACCA 57.625 39.130 4.72 0.00 46.18 3.67
35 36 4.978186 TCGTATAGACAAAGACGAACCAG 58.022 43.478 0.00 0.00 41.04 4.00
36 37 4.456911 TCGTATAGACAAAGACGAACCAGT 59.543 41.667 0.00 0.00 41.04 4.00
37 38 5.048504 TCGTATAGACAAAGACGAACCAGTT 60.049 40.000 0.00 0.00 41.04 3.16
38 39 5.060569 CGTATAGACAAAGACGAACCAGTTG 59.939 44.000 0.00 0.00 37.50 3.16
39 40 2.561569 AGACAAAGACGAACCAGTTGG 58.438 47.619 0.00 0.00 42.17 3.77
40 41 1.002792 GACAAAGACGAACCAGTTGGC 60.003 52.381 0.00 0.00 39.32 4.52
41 42 0.041312 CAAAGACGAACCAGTTGGCG 60.041 55.000 0.00 0.00 39.32 5.69
42 43 1.782028 AAAGACGAACCAGTTGGCGC 61.782 55.000 0.00 0.00 39.32 6.53
43 44 4.072088 GACGAACCAGTTGGCGCG 62.072 66.667 0.00 0.00 39.78 6.86
50 51 3.192230 CAGTTGGCGCGGCGATAA 61.192 61.111 28.54 16.65 0.00 1.75
51 52 3.192922 AGTTGGCGCGGCGATAAC 61.193 61.111 28.54 26.13 0.00 1.89
52 53 4.232248 GTTGGCGCGGCGATAACC 62.232 66.667 28.54 17.89 0.00 2.85
53 54 4.460683 TTGGCGCGGCGATAACCT 62.461 61.111 28.54 0.00 0.00 3.50
56 57 3.627218 GCGCGGCGATAACCTGTC 61.627 66.667 28.54 0.14 0.00 3.51
57 58 2.104331 CGCGGCGATAACCTGTCT 59.896 61.111 19.16 0.00 0.00 3.41
58 59 2.230940 CGCGGCGATAACCTGTCTG 61.231 63.158 19.16 0.00 0.00 3.51
59 60 1.141019 GCGGCGATAACCTGTCTGA 59.859 57.895 12.98 0.00 0.00 3.27
60 61 1.146358 GCGGCGATAACCTGTCTGAC 61.146 60.000 12.98 0.00 0.00 3.51
61 62 0.866061 CGGCGATAACCTGTCTGACG 60.866 60.000 0.00 0.00 0.00 4.35
62 63 1.146358 GGCGATAACCTGTCTGACGC 61.146 60.000 2.98 0.00 43.00 5.19
63 64 1.146358 GCGATAACCTGTCTGACGCC 61.146 60.000 2.98 0.00 38.94 5.68
64 65 0.172578 CGATAACCTGTCTGACGCCA 59.827 55.000 2.98 0.00 0.00 5.69
65 66 1.403647 CGATAACCTGTCTGACGCCAA 60.404 52.381 2.98 0.00 0.00 4.52
66 67 2.000447 GATAACCTGTCTGACGCCAAC 59.000 52.381 2.98 0.00 0.00 3.77
67 68 1.045407 TAACCTGTCTGACGCCAACT 58.955 50.000 2.98 0.00 0.00 3.16
68 69 0.532862 AACCTGTCTGACGCCAACTG 60.533 55.000 2.98 0.00 0.00 3.16
69 70 1.069765 CCTGTCTGACGCCAACTGT 59.930 57.895 2.98 0.00 0.00 3.55
70 71 1.224069 CCTGTCTGACGCCAACTGTG 61.224 60.000 2.98 0.00 0.00 3.66
71 72 1.835483 CTGTCTGACGCCAACTGTGC 61.835 60.000 2.98 0.00 0.00 4.57
78 79 3.846754 GCCAACTGTGCGATTTGC 58.153 55.556 0.00 0.00 46.70 3.68
79 80 1.286880 GCCAACTGTGCGATTTGCT 59.713 52.632 0.00 0.00 46.63 3.91
80 81 0.521291 GCCAACTGTGCGATTTGCTA 59.479 50.000 0.00 0.00 46.63 3.49
81 82 1.729149 GCCAACTGTGCGATTTGCTAC 60.729 52.381 0.00 0.00 46.63 3.58
82 83 1.535028 CCAACTGTGCGATTTGCTACA 59.465 47.619 0.00 0.08 46.63 2.74
83 84 2.031245 CCAACTGTGCGATTTGCTACAA 60.031 45.455 0.00 0.00 46.63 2.41
84 85 3.549827 CCAACTGTGCGATTTGCTACAAA 60.550 43.478 0.00 0.00 46.63 2.83
85 86 3.268013 ACTGTGCGATTTGCTACAAAC 57.732 42.857 0.00 0.00 46.63 2.93
86 87 2.233355 CTGTGCGATTTGCTACAAACG 58.767 47.619 0.00 3.43 46.63 3.60
87 88 1.069568 TGTGCGATTTGCTACAAACGG 60.070 47.619 13.05 3.73 46.63 4.44
88 89 0.109964 TGCGATTTGCTACAAACGGC 60.110 50.000 13.05 11.22 46.63 5.68
89 90 0.168128 GCGATTTGCTACAAACGGCT 59.832 50.000 13.05 0.00 41.73 5.52
90 91 1.882198 CGATTTGCTACAAACGGCTG 58.118 50.000 0.00 0.00 0.00 4.85
91 92 1.463056 CGATTTGCTACAAACGGCTGA 59.537 47.619 0.00 0.00 0.00 4.26
92 93 2.474526 CGATTTGCTACAAACGGCTGAG 60.475 50.000 0.00 0.00 0.00 3.35
93 94 2.248280 TTTGCTACAAACGGCTGAGA 57.752 45.000 0.00 0.00 0.00 3.27
94 95 2.472695 TTGCTACAAACGGCTGAGAT 57.527 45.000 0.00 0.00 0.00 2.75
95 96 2.010145 TGCTACAAACGGCTGAGATC 57.990 50.000 0.00 0.00 0.00 2.75
96 97 1.291132 GCTACAAACGGCTGAGATCC 58.709 55.000 0.00 0.00 0.00 3.36
97 98 1.405526 GCTACAAACGGCTGAGATCCA 60.406 52.381 0.00 0.00 0.00 3.41
98 99 2.743183 GCTACAAACGGCTGAGATCCAT 60.743 50.000 0.00 0.00 0.00 3.41
99 100 2.029838 ACAAACGGCTGAGATCCATC 57.970 50.000 0.00 0.00 0.00 3.51
100 101 0.933097 CAAACGGCTGAGATCCATCG 59.067 55.000 0.00 0.00 0.00 3.84
101 102 0.824109 AAACGGCTGAGATCCATCGA 59.176 50.000 0.00 0.00 0.00 3.59
102 103 1.043816 AACGGCTGAGATCCATCGAT 58.956 50.000 0.00 0.00 0.00 3.59
103 104 0.600557 ACGGCTGAGATCCATCGATC 59.399 55.000 0.00 0.00 44.65 3.69
104 105 0.600057 CGGCTGAGATCCATCGATCA 59.400 55.000 3.03 0.00 46.42 2.92
105 106 1.000171 CGGCTGAGATCCATCGATCAA 60.000 52.381 3.03 0.00 46.42 2.57
106 107 2.353505 CGGCTGAGATCCATCGATCAAT 60.354 50.000 3.03 0.00 46.42 2.57
107 108 3.260740 GGCTGAGATCCATCGATCAATC 58.739 50.000 3.03 1.48 46.42 2.67
108 109 3.306571 GGCTGAGATCCATCGATCAATCA 60.307 47.826 15.44 7.06 46.42 2.57
109 110 3.679025 GCTGAGATCCATCGATCAATCAC 59.321 47.826 15.44 11.14 46.42 3.06
110 111 4.244066 CTGAGATCCATCGATCAATCACC 58.756 47.826 15.44 9.24 46.42 4.02
111 112 3.249091 GAGATCCATCGATCAATCACCG 58.751 50.000 15.44 0.00 46.42 4.94
112 113 1.728971 GATCCATCGATCAATCACCGC 59.271 52.381 0.00 0.00 43.87 5.68
113 114 0.249868 TCCATCGATCAATCACCGCC 60.250 55.000 0.00 0.00 0.00 6.13
114 115 1.230635 CCATCGATCAATCACCGCCC 61.231 60.000 0.00 0.00 0.00 6.13
115 116 0.532640 CATCGATCAATCACCGCCCA 60.533 55.000 0.00 0.00 0.00 5.36
116 117 0.532862 ATCGATCAATCACCGCCCAC 60.533 55.000 0.00 0.00 0.00 4.61
117 118 1.153369 CGATCAATCACCGCCCACT 60.153 57.895 0.00 0.00 0.00 4.00
118 119 0.744414 CGATCAATCACCGCCCACTT 60.744 55.000 0.00 0.00 0.00 3.16
119 120 1.463674 GATCAATCACCGCCCACTTT 58.536 50.000 0.00 0.00 0.00 2.66
120 121 1.818674 GATCAATCACCGCCCACTTTT 59.181 47.619 0.00 0.00 0.00 2.27
121 122 1.698506 TCAATCACCGCCCACTTTTT 58.301 45.000 0.00 0.00 0.00 1.94
145 146 7.585286 TTTTGCAAATCACTTCTGATTATGC 57.415 32.000 13.65 15.85 44.93 3.14
146 147 5.252969 TGCAAATCACTTCTGATTATGCC 57.747 39.130 17.90 8.68 44.93 4.40
147 148 4.201940 TGCAAATCACTTCTGATTATGCCG 60.202 41.667 17.90 0.00 44.93 5.69
148 149 4.035558 GCAAATCACTTCTGATTATGCCGA 59.964 41.667 13.72 0.00 44.93 5.54
149 150 5.449041 GCAAATCACTTCTGATTATGCCGAA 60.449 40.000 13.72 0.00 44.93 4.30
150 151 5.741388 AATCACTTCTGATTATGCCGAAC 57.259 39.130 0.00 0.00 44.04 3.95
151 152 4.200838 TCACTTCTGATTATGCCGAACA 57.799 40.909 0.00 0.00 0.00 3.18
152 153 4.574892 TCACTTCTGATTATGCCGAACAA 58.425 39.130 0.00 0.00 0.00 2.83
153 154 4.391830 TCACTTCTGATTATGCCGAACAAC 59.608 41.667 0.00 0.00 0.00 3.32
154 155 3.689649 ACTTCTGATTATGCCGAACAACC 59.310 43.478 0.00 0.00 0.00 3.77
155 156 3.627395 TCTGATTATGCCGAACAACCT 57.373 42.857 0.00 0.00 0.00 3.50
156 157 3.950397 TCTGATTATGCCGAACAACCTT 58.050 40.909 0.00 0.00 0.00 3.50
157 158 4.331968 TCTGATTATGCCGAACAACCTTT 58.668 39.130 0.00 0.00 0.00 3.11
158 159 4.394920 TCTGATTATGCCGAACAACCTTTC 59.605 41.667 0.00 0.00 0.00 2.62
159 160 4.075682 TGATTATGCCGAACAACCTTTCA 58.924 39.130 0.00 0.00 0.00 2.69
160 161 4.155826 TGATTATGCCGAACAACCTTTCAG 59.844 41.667 0.00 0.00 0.00 3.02
161 162 2.270352 ATGCCGAACAACCTTTCAGA 57.730 45.000 0.00 0.00 0.00 3.27
162 163 1.593196 TGCCGAACAACCTTTCAGAG 58.407 50.000 0.00 0.00 0.00 3.35
163 164 0.238553 GCCGAACAACCTTTCAGAGC 59.761 55.000 0.00 0.00 0.00 4.09
164 165 1.593196 CCGAACAACCTTTCAGAGCA 58.407 50.000 0.00 0.00 0.00 4.26
165 166 1.946768 CCGAACAACCTTTCAGAGCAA 59.053 47.619 0.00 0.00 0.00 3.91
166 167 2.287009 CCGAACAACCTTTCAGAGCAAC 60.287 50.000 0.00 0.00 0.00 4.17
167 168 2.599848 CGAACAACCTTTCAGAGCAACG 60.600 50.000 0.00 0.00 0.00 4.10
168 169 2.325583 ACAACCTTTCAGAGCAACGA 57.674 45.000 0.00 0.00 0.00 3.85
169 170 2.639065 ACAACCTTTCAGAGCAACGAA 58.361 42.857 0.00 0.00 0.00 3.85
170 171 2.614057 ACAACCTTTCAGAGCAACGAAG 59.386 45.455 0.00 0.00 0.00 3.79
172 173 3.746045 ACCTTTCAGAGCAACGAAGTA 57.254 42.857 0.00 0.00 45.00 2.24
173 174 4.067972 ACCTTTCAGAGCAACGAAGTAA 57.932 40.909 0.00 0.00 45.00 2.24
174 175 4.642429 ACCTTTCAGAGCAACGAAGTAAT 58.358 39.130 0.00 0.00 45.00 1.89
175 176 5.063880 ACCTTTCAGAGCAACGAAGTAATT 58.936 37.500 0.00 0.00 45.00 1.40
176 177 5.049405 ACCTTTCAGAGCAACGAAGTAATTG 60.049 40.000 0.00 0.00 45.00 2.32
177 178 5.356882 TTTCAGAGCAACGAAGTAATTGG 57.643 39.130 0.00 0.00 45.00 3.16
178 179 4.002906 TCAGAGCAACGAAGTAATTGGT 57.997 40.909 0.00 0.00 45.00 3.67
179 180 3.994392 TCAGAGCAACGAAGTAATTGGTC 59.006 43.478 7.84 7.84 45.00 4.02
181 182 4.585619 GAGCAACGAAGTAATTGGTCTC 57.414 45.455 8.50 0.00 45.00 3.36
182 183 2.993899 AGCAACGAAGTAATTGGTCTCG 59.006 45.455 0.00 0.00 45.00 4.04
183 184 2.474032 GCAACGAAGTAATTGGTCTCGC 60.474 50.000 0.00 0.00 45.00 5.03
184 185 2.734606 CAACGAAGTAATTGGTCTCGCA 59.265 45.455 0.00 0.00 45.00 5.10
185 186 3.034721 ACGAAGTAATTGGTCTCGCAA 57.965 42.857 0.00 0.00 41.94 4.85
186 187 2.993899 ACGAAGTAATTGGTCTCGCAAG 59.006 45.455 0.00 0.00 41.94 4.01
187 188 2.222819 CGAAGTAATTGGTCTCGCAAGC 60.223 50.000 0.00 0.00 37.18 4.01
188 189 2.472695 AGTAATTGGTCTCGCAAGCA 57.527 45.000 0.00 0.00 37.18 3.91
189 190 2.991250 AGTAATTGGTCTCGCAAGCAT 58.009 42.857 0.00 0.00 37.18 3.79
190 191 2.679837 AGTAATTGGTCTCGCAAGCATG 59.320 45.455 0.00 0.00 37.18 4.06
191 192 1.825090 AATTGGTCTCGCAAGCATGA 58.175 45.000 0.00 0.00 37.18 3.07
192 193 1.825090 ATTGGTCTCGCAAGCATGAA 58.175 45.000 0.00 0.00 37.18 2.57
193 194 1.603456 TTGGTCTCGCAAGCATGAAA 58.397 45.000 0.00 0.00 37.18 2.69
194 195 1.825090 TGGTCTCGCAAGCATGAAAT 58.175 45.000 0.00 0.00 37.18 2.17
209 210 5.649430 CATGAAATGCGACGTTTTTAGTC 57.351 39.130 0.00 0.00 37.62 2.59
210 211 4.136517 TGAAATGCGACGTTTTTAGTCC 57.863 40.909 0.00 0.00 35.33 3.85
211 212 2.867456 AATGCGACGTTTTTAGTCCG 57.133 45.000 0.00 0.00 35.33 4.79
212 213 1.787012 ATGCGACGTTTTTAGTCCGT 58.213 45.000 0.00 0.00 37.56 4.69
213 214 2.414058 TGCGACGTTTTTAGTCCGTA 57.586 45.000 0.00 0.00 34.51 4.02
214 215 2.318578 TGCGACGTTTTTAGTCCGTAG 58.681 47.619 0.00 0.00 34.51 3.51
215 216 1.058270 GCGACGTTTTTAGTCCGTAGC 59.942 52.381 0.00 0.00 43.65 3.58
216 217 2.318578 CGACGTTTTTAGTCCGTAGCA 58.681 47.619 0.00 0.00 34.51 3.49
217 218 2.725723 CGACGTTTTTAGTCCGTAGCAA 59.274 45.455 0.00 0.00 34.51 3.91
218 219 3.182173 CGACGTTTTTAGTCCGTAGCAAA 59.818 43.478 0.00 0.00 34.51 3.68
219 220 4.662394 CGACGTTTTTAGTCCGTAGCAAAG 60.662 45.833 0.00 0.00 34.51 2.77
220 221 3.059393 ACGTTTTTAGTCCGTAGCAAAGC 60.059 43.478 0.00 0.00 32.22 3.51
221 222 3.476181 GTTTTTAGTCCGTAGCAAAGCG 58.524 45.455 0.00 0.00 0.00 4.68
222 223 1.073177 TTTAGTCCGTAGCAAAGCGC 58.927 50.000 0.00 0.00 42.91 5.92
231 232 2.126850 GCAAAGCGCGGGTTTCTC 60.127 61.111 8.83 0.00 30.52 2.87
232 233 2.561373 CAAAGCGCGGGTTTCTCC 59.439 61.111 8.83 0.00 30.52 3.71
242 243 2.352388 CGGGTTTCTCCGCTTAATTCA 58.648 47.619 0.00 0.00 43.71 2.57
243 244 2.745281 CGGGTTTCTCCGCTTAATTCAA 59.255 45.455 0.00 0.00 43.71 2.69
244 245 3.425758 CGGGTTTCTCCGCTTAATTCAAC 60.426 47.826 0.00 0.00 43.71 3.18
245 246 3.119602 GGGTTTCTCCGCTTAATTCAACC 60.120 47.826 0.00 0.00 37.00 3.77
246 247 3.425758 GGTTTCTCCGCTTAATTCAACCG 60.426 47.826 0.00 0.00 0.00 4.44
247 248 2.754946 TCTCCGCTTAATTCAACCGT 57.245 45.000 0.00 0.00 0.00 4.83
248 249 2.343101 TCTCCGCTTAATTCAACCGTG 58.657 47.619 0.00 0.00 0.00 4.94
249 250 1.396996 CTCCGCTTAATTCAACCGTGG 59.603 52.381 0.00 0.00 0.00 4.94
250 251 0.179174 CCGCTTAATTCAACCGTGGC 60.179 55.000 0.00 0.00 0.00 5.01
251 252 0.520412 CGCTTAATTCAACCGTGGCG 60.520 55.000 0.00 0.00 35.75 5.69
252 253 0.519961 GCTTAATTCAACCGTGGCGT 59.480 50.000 0.00 0.00 0.00 5.68
253 254 1.465187 GCTTAATTCAACCGTGGCGTC 60.465 52.381 0.00 0.00 0.00 5.19
254 255 1.129811 CTTAATTCAACCGTGGCGTCC 59.870 52.381 0.00 0.00 0.00 4.79
255 256 0.322322 TAATTCAACCGTGGCGTCCT 59.678 50.000 0.00 0.00 0.00 3.85
256 257 0.953960 AATTCAACCGTGGCGTCCTC 60.954 55.000 0.00 0.00 0.00 3.71
257 258 3.851845 TTCAACCGTGGCGTCCTCG 62.852 63.158 11.63 11.63 39.77 4.63
258 259 4.351938 CAACCGTGGCGTCCTCGA 62.352 66.667 17.72 0.00 42.19 4.04
259 260 4.353437 AACCGTGGCGTCCTCGAC 62.353 66.667 17.72 0.00 46.54 4.20
266 267 2.202324 GCGTCCTCGACAGTCGAC 60.202 66.667 21.92 11.99 44.82 4.20
267 268 2.962827 GCGTCCTCGACAGTCGACA 61.963 63.158 21.92 8.59 44.82 4.35
268 269 1.132844 CGTCCTCGACAGTCGACAG 59.867 63.158 21.92 15.57 44.82 3.51
269 270 1.502640 GTCCTCGACAGTCGACAGG 59.497 63.158 21.92 21.04 44.82 4.00
270 271 1.072678 TCCTCGACAGTCGACAGGT 59.927 57.895 21.92 15.39 44.82 4.00
271 272 0.954449 TCCTCGACAGTCGACAGGTC 60.954 60.000 21.92 22.98 44.82 3.85
272 273 0.956410 CCTCGACAGTCGACAGGTCT 60.956 60.000 27.06 4.40 44.82 3.85
273 274 0.875728 CTCGACAGTCGACAGGTCTT 59.124 55.000 27.06 4.08 44.82 3.01
274 275 2.074576 CTCGACAGTCGACAGGTCTTA 58.925 52.381 27.06 18.33 44.82 2.10
275 276 2.678836 CTCGACAGTCGACAGGTCTTAT 59.321 50.000 27.06 3.10 44.82 1.73
276 277 2.418976 TCGACAGTCGACAGGTCTTATG 59.581 50.000 27.06 16.99 44.82 1.90
277 278 2.531206 GACAGTCGACAGGTCTTATGC 58.469 52.381 24.60 6.11 0.00 3.14
278 279 1.893137 ACAGTCGACAGGTCTTATGCA 59.107 47.619 19.50 0.00 0.00 3.96
279 280 2.263077 CAGTCGACAGGTCTTATGCAC 58.737 52.381 19.50 0.00 0.00 4.57
280 281 1.135373 AGTCGACAGGTCTTATGCACG 60.135 52.381 19.50 0.00 0.00 5.34
281 282 0.172578 TCGACAGGTCTTATGCACGG 59.827 55.000 0.00 0.00 0.00 4.94
282 283 0.806102 CGACAGGTCTTATGCACGGG 60.806 60.000 0.00 0.00 0.00 5.28
283 284 1.078426 ACAGGTCTTATGCACGGGC 60.078 57.895 0.34 0.34 41.68 6.13
293 294 2.804856 GCACGGGCAACACAAAGT 59.195 55.556 3.77 0.00 40.72 2.66
294 295 2.026522 GCACGGGCAACACAAAGTA 58.973 52.632 3.77 0.00 40.72 2.24
295 296 0.317519 GCACGGGCAACACAAAGTAC 60.318 55.000 3.77 0.00 40.72 2.73
296 297 1.018148 CACGGGCAACACAAAGTACA 58.982 50.000 0.00 0.00 39.74 2.90
297 298 1.002900 CACGGGCAACACAAAGTACAG 60.003 52.381 0.00 0.00 39.74 2.74
298 299 0.591170 CGGGCAACACAAAGTACAGG 59.409 55.000 0.00 0.00 39.74 4.00
299 300 1.812324 CGGGCAACACAAAGTACAGGA 60.812 52.381 0.00 0.00 39.74 3.86
300 301 1.880027 GGGCAACACAAAGTACAGGAG 59.120 52.381 0.00 0.00 39.74 3.69
301 302 1.880027 GGCAACACAAAGTACAGGAGG 59.120 52.381 0.00 0.00 0.00 4.30
302 303 2.486548 GGCAACACAAAGTACAGGAGGA 60.487 50.000 0.00 0.00 0.00 3.71
303 304 2.548480 GCAACACAAAGTACAGGAGGAC 59.452 50.000 0.00 0.00 0.00 3.85
337 341 4.120331 GGTCAGCATTGCCGTGCC 62.120 66.667 4.70 0.00 46.19 5.01
383 391 1.502231 CAGTCAACCGGTCAAGTCAG 58.498 55.000 8.04 0.00 0.00 3.51
421 429 4.770531 AGCCTACGCTATATCAATGTACCA 59.229 41.667 0.00 0.00 46.08 3.25
422 430 5.103000 GCCTACGCTATATCAATGTACCAG 58.897 45.833 0.00 0.00 0.00 4.00
423 431 5.103000 CCTACGCTATATCAATGTACCAGC 58.897 45.833 0.00 0.00 0.00 4.85
426 434 3.614150 CGCTATATCAATGTACCAGCGGT 60.614 47.826 5.23 5.58 44.79 5.68
427 435 4.380128 CGCTATATCAATGTACCAGCGGTA 60.380 45.833 5.23 3.72 44.79 4.02
438 447 1.134340 ACCAGCGGTACAAGACAACAA 60.134 47.619 0.00 0.00 32.11 2.83
470 479 4.519147 GCAGAGAAGACGAAACAAGAAAC 58.481 43.478 0.00 0.00 0.00 2.78
474 483 7.244192 CAGAGAAGACGAAACAAGAAACTTTT 58.756 34.615 0.00 0.00 0.00 2.27
475 484 8.388103 CAGAGAAGACGAAACAAGAAACTTTTA 58.612 33.333 0.00 0.00 0.00 1.52
476 485 9.110502 AGAGAAGACGAAACAAGAAACTTTTAT 57.889 29.630 0.00 0.00 0.00 1.40
480 489 7.570161 AGACGAAACAAGAAACTTTTATACGG 58.430 34.615 0.00 0.00 0.00 4.02
481 490 7.225341 AGACGAAACAAGAAACTTTTATACGGT 59.775 33.333 0.00 0.00 0.00 4.83
482 491 8.364129 ACGAAACAAGAAACTTTTATACGGTA 57.636 30.769 0.00 0.00 0.00 4.02
483 492 8.992073 ACGAAACAAGAAACTTTTATACGGTAT 58.008 29.630 5.87 5.87 0.00 2.73
511 520 1.128692 GCATCTACAACCACAACTCGC 59.871 52.381 0.00 0.00 0.00 5.03
519 528 0.591170 ACCACAACTCGCAAATTCCG 59.409 50.000 0.00 0.00 0.00 4.30
524 533 3.876198 CTCGCAAATTCCGCCCCG 61.876 66.667 0.00 0.00 0.00 5.73
545 554 4.185413 CGGACAATGACCGGACAG 57.815 61.111 15.88 0.00 45.65 3.51
569 578 6.252655 AGCACACTAAAAATCGTTTTCACAAC 59.747 34.615 0.00 0.00 38.01 3.32
571 580 6.528423 CACACTAAAAATCGTTTTCACAACCA 59.472 34.615 0.00 0.00 38.01 3.67
578 587 3.404899 TCGTTTTCACAACCAGATACCC 58.595 45.455 0.00 0.00 0.00 3.69
587 2199 3.075283 ACAACCAGATACCCCATTTGTGA 59.925 43.478 0.00 0.00 0.00 3.58
598 2210 6.377245 ACCCCATTTGTGAATCATCAAATT 57.623 33.333 15.77 5.08 40.70 1.82
622 2236 6.545567 TCATATTATCACATGCATGAACCCT 58.454 36.000 32.75 14.16 30.82 4.34
633 2247 5.811399 TGCATGAACCCTAATCTAAAACG 57.189 39.130 0.00 0.00 0.00 3.60
636 2250 5.007724 GCATGAACCCTAATCTAAAACGGAG 59.992 44.000 0.00 0.00 0.00 4.63
638 2252 4.224370 TGAACCCTAATCTAAAACGGAGCT 59.776 41.667 0.00 0.00 0.00 4.09
640 2254 3.181478 ACCCTAATCTAAAACGGAGCTCG 60.181 47.826 7.83 5.83 45.88 5.03
641 2255 3.381949 CCTAATCTAAAACGGAGCTCGG 58.618 50.000 18.87 18.87 44.45 4.63
643 2257 0.179081 ATCTAAAACGGAGCTCGGCC 60.179 55.000 20.22 0.02 44.45 6.13
664 2278 1.748122 CTCTGCTGTGCCCATGTCC 60.748 63.158 0.00 0.00 0.00 4.02
666 2280 3.610619 CTGCTGTGCCCATGTCCGA 62.611 63.158 0.00 0.00 0.00 4.55
667 2281 2.124570 GCTGTGCCCATGTCCGAT 60.125 61.111 0.00 0.00 0.00 4.18
669 2283 1.820906 CTGTGCCCATGTCCGATGG 60.821 63.158 0.00 0.00 38.88 3.51
683 2297 4.966787 ATGGTTGGTTGCGCCCGT 62.967 61.111 4.18 0.00 36.04 5.28
694 2308 1.081708 GCGCCCGTCGAAAATGTTT 60.082 52.632 0.00 0.00 41.67 2.83
700 2314 2.350388 CCCGTCGAAAATGTTTGTCTGG 60.350 50.000 0.00 0.00 0.00 3.86
702 2316 3.541711 CGTCGAAAATGTTTGTCTGGTC 58.458 45.455 0.00 0.00 0.00 4.02
703 2317 3.606153 CGTCGAAAATGTTTGTCTGGTCC 60.606 47.826 0.00 0.00 0.00 4.46
709 2323 6.582295 CGAAAATGTTTGTCTGGTCCTATTTG 59.418 38.462 0.00 0.00 0.00 2.32
710 2324 7.521423 CGAAAATGTTTGTCTGGTCCTATTTGA 60.521 37.037 0.00 0.00 0.00 2.69
711 2325 6.575162 AATGTTTGTCTGGTCCTATTTGAC 57.425 37.500 0.00 0.00 34.42 3.18
712 2326 5.042463 TGTTTGTCTGGTCCTATTTGACA 57.958 39.130 0.00 0.00 36.97 3.58
713 2327 5.441500 TGTTTGTCTGGTCCTATTTGACAA 58.558 37.500 0.00 0.00 43.17 3.18
722 2387 1.676006 CCTATTTGACAATGACCGGGC 59.324 52.381 6.32 1.57 0.00 6.13
768 2433 1.591768 ATGGGGTCCGGTTGTAGATT 58.408 50.000 0.00 0.00 0.00 2.40
769 2434 2.250921 TGGGGTCCGGTTGTAGATTA 57.749 50.000 0.00 0.00 0.00 1.75
786 2451 5.532664 AGATTACTCTAACCATTCCGGAC 57.467 43.478 1.83 0.00 38.63 4.79
897 2563 1.900237 GCGACTTGCAATGGATTCAC 58.100 50.000 0.00 0.00 45.45 3.18
1074 2751 2.117865 CTCCTTCTCTTGCTGATCCCT 58.882 52.381 0.00 0.00 0.00 4.20
1149 2829 2.031870 TCATCGGTGTTCATCGAGGAT 58.968 47.619 16.67 0.00 40.45 3.24
1375 3070 3.893572 TCGACTACGATGGCACGA 58.106 55.556 14.63 3.50 43.81 4.35
1403 3098 2.736995 CACCAACACGACCGCGAT 60.737 61.111 8.23 0.00 41.64 4.58
1450 3145 1.065491 ACAGCGGCAACCTTATCATCA 60.065 47.619 1.45 0.00 0.00 3.07
1804 3499 2.224402 GGTGATCAGGTTATGAGGAGGC 60.224 54.545 0.00 0.00 42.53 4.70
1937 3632 1.269883 TGGCAAAAACAGCATCTGCAG 60.270 47.619 7.63 7.63 45.16 4.41
1995 3690 0.396435 TCGAGGTGGTTGATGCAAGT 59.604 50.000 0.00 0.00 0.00 3.16
2039 3734 3.057315 CCCAATGTAAACAAGACAGCCAG 60.057 47.826 0.00 0.00 0.00 4.85
2324 4055 0.111253 CCCAGGAGGTTGCTGTCTTT 59.889 55.000 0.00 0.00 33.66 2.52
2445 4176 4.399219 AGTTTGGCTACTTCCTTTCTTCC 58.601 43.478 0.00 0.00 0.00 3.46
2514 4245 8.097662 GGTTGTTGGATTGTTTATAAATGGGAA 58.902 33.333 0.31 0.00 0.00 3.97
2541 4272 5.523588 AGACCAGAGATTACAGATGAAGGA 58.476 41.667 0.00 0.00 0.00 3.36
2566 4297 9.440773 GATACATGATAATATCAAGCCAGTTCA 57.559 33.333 7.07 0.00 43.50 3.18
2568 4299 6.713903 ACATGATAATATCAAGCCAGTTCAGG 59.286 38.462 7.07 0.00 43.50 3.86
2569 4300 5.624159 TGATAATATCAAGCCAGTTCAGGG 58.376 41.667 0.00 0.00 36.11 4.45
2620 4351 5.278315 GCAACCGATTACTTCCAAAAAGAGT 60.278 40.000 0.00 0.00 0.00 3.24
2682 4414 1.594862 GATGATGAAAGGAAGGTCGCG 59.405 52.381 0.00 0.00 0.00 5.87
2702 4434 3.790123 GCGGTGAAGAAGCTAAATGATGC 60.790 47.826 0.00 0.00 0.00 3.91
2894 4629 1.751927 CTCCTGTGCTCCAATGGGC 60.752 63.158 0.00 2.35 0.00 5.36
2991 4726 2.415090 GCATTGTGATGTCAAGCCAGAC 60.415 50.000 0.00 0.00 38.99 3.51
3300 5035 2.119801 AACTTGCAGGCGAAGATCAT 57.880 45.000 0.00 0.00 0.00 2.45
3309 5044 3.436015 CAGGCGAAGATCATTCATGGATC 59.564 47.826 0.00 0.00 41.14 3.36
3429 5828 0.391661 GAAGACCGAGCATGAGCCAA 60.392 55.000 0.00 0.00 43.56 4.52
3682 6199 4.214119 TCCAGCAGTTTGAAGAAGAAATCG 59.786 41.667 0.00 0.00 0.00 3.34
3701 6223 6.426646 AATCGTTGATCCTTAGGAGCTAAT 57.573 37.500 17.83 0.00 39.11 1.73
3702 6224 7.540474 AATCGTTGATCCTTAGGAGCTAATA 57.460 36.000 17.83 2.35 39.11 0.98
3703 6225 6.971726 TCGTTGATCCTTAGGAGCTAATAA 57.028 37.500 17.83 0.40 39.11 1.40
3717 6239 6.651225 AGGAGCTAATAAATCGATAGCAAACC 59.349 38.462 17.09 15.56 43.48 3.27
3719 6241 5.408604 AGCTAATAAATCGATAGCAAACCGG 59.591 40.000 17.09 0.00 43.48 5.28
3724 6246 5.668558 AAATCGATAGCAAACCGGAATAC 57.331 39.130 9.46 0.00 0.00 1.89
3799 6330 4.766373 TGATTTATTGAGCAGCCAACAGAA 59.234 37.500 0.00 0.00 0.00 3.02
3890 6431 5.063204 TGACAGGACCTGTTAAACAATCAG 58.937 41.667 27.76 0.00 45.44 2.90
3897 6438 3.004629 CCTGTTAAACAATCAGCAGTGCA 59.995 43.478 19.20 0.00 0.00 4.57
3898 6439 3.963665 TGTTAAACAATCAGCAGTGCAC 58.036 40.909 19.20 9.40 0.00 4.57
3899 6440 3.243367 TGTTAAACAATCAGCAGTGCACC 60.243 43.478 19.20 0.00 0.00 5.01
3900 6441 1.401761 AAACAATCAGCAGTGCACCA 58.598 45.000 19.20 0.00 0.00 4.17
3901 6442 0.956633 AACAATCAGCAGTGCACCAG 59.043 50.000 19.20 7.97 0.00 4.00
3902 6443 0.179009 ACAATCAGCAGTGCACCAGT 60.179 50.000 19.20 6.16 0.00 4.00
3903 6444 0.240145 CAATCAGCAGTGCACCAGTG 59.760 55.000 19.20 6.72 37.80 3.66
3904 6445 0.179009 AATCAGCAGTGCACCAGTGT 60.179 50.000 19.20 0.00 37.16 3.55
4114 6655 2.466982 ATTGTGGAGCATCGCGCAG 61.467 57.895 8.75 0.00 46.13 5.18
4197 6738 2.851102 CCCCATCAGGCTCCGGAT 60.851 66.667 3.57 0.00 0.00 4.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.097437 TGTCTATACGAACCGAGCAAAGAT 59.903 41.667 0.00 0.00 0.00 2.40
1 2 3.441222 TGTCTATACGAACCGAGCAAAGA 59.559 43.478 0.00 0.00 0.00 2.52
2 3 3.766151 TGTCTATACGAACCGAGCAAAG 58.234 45.455 0.00 0.00 0.00 2.77
3 4 3.853831 TGTCTATACGAACCGAGCAAA 57.146 42.857 0.00 0.00 0.00 3.68
4 5 3.853831 TTGTCTATACGAACCGAGCAA 57.146 42.857 0.00 0.00 0.00 3.91
5 6 3.441222 TCTTTGTCTATACGAACCGAGCA 59.559 43.478 0.00 0.00 0.00 4.26
6 7 3.790288 GTCTTTGTCTATACGAACCGAGC 59.210 47.826 0.00 0.00 0.00 5.03
7 8 4.027065 CGTCTTTGTCTATACGAACCGAG 58.973 47.826 0.00 0.00 37.53 4.63
8 9 3.684305 TCGTCTTTGTCTATACGAACCGA 59.316 43.478 0.00 0.00 41.01 4.69
9 10 4.007282 TCGTCTTTGTCTATACGAACCG 57.993 45.455 0.00 0.00 41.01 4.44
13 14 4.456911 ACTGGTTCGTCTTTGTCTATACGA 59.543 41.667 0.00 0.00 42.12 3.43
14 15 4.730657 ACTGGTTCGTCTTTGTCTATACG 58.269 43.478 0.00 0.00 36.71 3.06
15 16 5.347907 CCAACTGGTTCGTCTTTGTCTATAC 59.652 44.000 0.00 0.00 0.00 1.47
16 17 5.475719 CCAACTGGTTCGTCTTTGTCTATA 58.524 41.667 0.00 0.00 0.00 1.31
17 18 4.315803 CCAACTGGTTCGTCTTTGTCTAT 58.684 43.478 0.00 0.00 0.00 1.98
18 19 3.724374 CCAACTGGTTCGTCTTTGTCTA 58.276 45.455 0.00 0.00 0.00 2.59
19 20 2.561569 CCAACTGGTTCGTCTTTGTCT 58.438 47.619 0.00 0.00 0.00 3.41
20 21 1.002792 GCCAACTGGTTCGTCTTTGTC 60.003 52.381 0.00 0.00 37.57 3.18
21 22 1.021968 GCCAACTGGTTCGTCTTTGT 58.978 50.000 0.00 0.00 37.57 2.83
22 23 0.041312 CGCCAACTGGTTCGTCTTTG 60.041 55.000 0.00 0.00 37.57 2.77
23 24 1.782028 GCGCCAACTGGTTCGTCTTT 61.782 55.000 0.00 0.00 37.57 2.52
24 25 2.251642 GCGCCAACTGGTTCGTCTT 61.252 57.895 0.00 0.00 37.57 3.01
25 26 2.665185 GCGCCAACTGGTTCGTCT 60.665 61.111 0.00 0.00 37.57 4.18
26 27 4.072088 CGCGCCAACTGGTTCGTC 62.072 66.667 0.00 0.00 37.57 4.20
33 34 3.192230 TTATCGCCGCGCCAACTG 61.192 61.111 8.21 0.00 0.00 3.16
34 35 3.192922 GTTATCGCCGCGCCAACT 61.193 61.111 8.21 0.00 0.00 3.16
35 36 4.232248 GGTTATCGCCGCGCCAAC 62.232 66.667 8.21 13.50 0.00 3.77
36 37 4.460683 AGGTTATCGCCGCGCCAA 62.461 61.111 8.21 1.05 0.00 4.52
39 40 3.627218 GACAGGTTATCGCCGCGC 61.627 66.667 8.21 0.00 0.00 6.86
40 41 2.104331 AGACAGGTTATCGCCGCG 59.896 61.111 6.39 6.39 0.00 6.46
41 42 1.141019 TCAGACAGGTTATCGCCGC 59.859 57.895 0.00 0.00 0.00 6.53
42 43 0.866061 CGTCAGACAGGTTATCGCCG 60.866 60.000 0.41 0.00 0.00 6.46
43 44 1.146358 GCGTCAGACAGGTTATCGCC 61.146 60.000 0.41 0.00 36.95 5.54
44 45 1.146358 GGCGTCAGACAGGTTATCGC 61.146 60.000 0.41 0.00 41.13 4.58
45 46 0.172578 TGGCGTCAGACAGGTTATCG 59.827 55.000 0.41 0.00 0.00 2.92
46 47 2.000447 GTTGGCGTCAGACAGGTTATC 59.000 52.381 0.41 0.00 36.30 1.75
47 48 1.623811 AGTTGGCGTCAGACAGGTTAT 59.376 47.619 0.41 0.00 36.30 1.89
48 49 1.045407 AGTTGGCGTCAGACAGGTTA 58.955 50.000 0.41 0.00 36.30 2.85
49 50 0.532862 CAGTTGGCGTCAGACAGGTT 60.533 55.000 0.41 0.00 36.30 3.50
50 51 1.069765 CAGTTGGCGTCAGACAGGT 59.930 57.895 0.41 0.00 36.30 4.00
51 52 1.069765 ACAGTTGGCGTCAGACAGG 59.930 57.895 0.41 0.00 36.30 4.00
52 53 1.835483 GCACAGTTGGCGTCAGACAG 61.835 60.000 0.41 0.00 36.30 3.51
53 54 1.887242 GCACAGTTGGCGTCAGACA 60.887 57.895 0.41 0.00 0.00 3.41
54 55 2.939022 GCACAGTTGGCGTCAGAC 59.061 61.111 0.00 0.00 0.00 3.51
61 62 0.521291 TAGCAAATCGCACAGTTGGC 59.479 50.000 0.00 0.00 46.13 4.52
62 63 1.535028 TGTAGCAAATCGCACAGTTGG 59.465 47.619 0.00 0.00 46.13 3.77
63 64 2.967459 TGTAGCAAATCGCACAGTTG 57.033 45.000 0.00 0.00 46.13 3.16
64 65 3.628017 GTTTGTAGCAAATCGCACAGTT 58.372 40.909 0.00 0.00 46.13 3.16
65 66 2.349438 CGTTTGTAGCAAATCGCACAGT 60.349 45.455 0.00 0.00 46.13 3.55
66 67 2.233355 CGTTTGTAGCAAATCGCACAG 58.767 47.619 0.00 0.00 46.13 3.66
67 68 1.069568 CCGTTTGTAGCAAATCGCACA 60.070 47.619 0.00 0.00 46.13 4.57
68 69 1.602191 CCGTTTGTAGCAAATCGCAC 58.398 50.000 0.00 0.00 46.13 5.34
69 70 0.109964 GCCGTTTGTAGCAAATCGCA 60.110 50.000 0.00 0.00 46.13 5.10
70 71 0.168128 AGCCGTTTGTAGCAAATCGC 59.832 50.000 0.00 3.41 42.91 4.58
71 72 1.463056 TCAGCCGTTTGTAGCAAATCG 59.537 47.619 0.00 4.28 0.00 3.34
72 73 2.742053 TCTCAGCCGTTTGTAGCAAATC 59.258 45.455 0.00 0.00 0.00 2.17
73 74 2.778299 TCTCAGCCGTTTGTAGCAAAT 58.222 42.857 0.00 0.00 0.00 2.32
74 75 2.248280 TCTCAGCCGTTTGTAGCAAA 57.752 45.000 0.00 0.00 0.00 3.68
75 76 2.346803 GATCTCAGCCGTTTGTAGCAA 58.653 47.619 0.00 0.00 0.00 3.91
76 77 1.405526 GGATCTCAGCCGTTTGTAGCA 60.406 52.381 0.00 0.00 0.00 3.49
77 78 1.291132 GGATCTCAGCCGTTTGTAGC 58.709 55.000 0.00 0.00 0.00 3.58
78 79 2.672961 TGGATCTCAGCCGTTTGTAG 57.327 50.000 0.00 0.00 0.00 2.74
79 80 2.481276 CGATGGATCTCAGCCGTTTGTA 60.481 50.000 0.00 0.00 0.00 2.41
80 81 1.740380 CGATGGATCTCAGCCGTTTGT 60.740 52.381 0.00 0.00 0.00 2.83
81 82 0.933097 CGATGGATCTCAGCCGTTTG 59.067 55.000 0.00 0.00 0.00 2.93
82 83 0.824109 TCGATGGATCTCAGCCGTTT 59.176 50.000 0.00 0.00 0.00 3.60
83 84 1.000283 GATCGATGGATCTCAGCCGTT 60.000 52.381 0.54 0.00 44.66 4.44
84 85 0.600557 GATCGATGGATCTCAGCCGT 59.399 55.000 0.54 0.00 44.66 5.68
85 86 3.415237 GATCGATGGATCTCAGCCG 57.585 57.895 0.54 0.00 44.66 5.52
93 94 1.609061 GGCGGTGATTGATCGATGGAT 60.609 52.381 0.54 0.00 34.96 3.41
94 95 0.249868 GGCGGTGATTGATCGATGGA 60.250 55.000 0.54 0.00 0.00 3.41
95 96 1.230635 GGGCGGTGATTGATCGATGG 61.231 60.000 0.54 0.00 0.00 3.51
96 97 0.532640 TGGGCGGTGATTGATCGATG 60.533 55.000 0.54 0.00 0.00 3.84
97 98 0.532862 GTGGGCGGTGATTGATCGAT 60.533 55.000 0.00 0.00 0.00 3.59
98 99 1.153449 GTGGGCGGTGATTGATCGA 60.153 57.895 0.00 0.00 0.00 3.59
99 100 0.744414 AAGTGGGCGGTGATTGATCG 60.744 55.000 0.00 0.00 0.00 3.69
100 101 1.463674 AAAGTGGGCGGTGATTGATC 58.536 50.000 0.00 0.00 0.00 2.92
101 102 1.923356 AAAAGTGGGCGGTGATTGAT 58.077 45.000 0.00 0.00 0.00 2.57
102 103 1.698506 AAAAAGTGGGCGGTGATTGA 58.301 45.000 0.00 0.00 0.00 2.57
129 130 4.769688 TGTTCGGCATAATCAGAAGTGAT 58.230 39.130 0.00 0.00 46.01 3.06
130 131 4.200838 TGTTCGGCATAATCAGAAGTGA 57.799 40.909 0.00 0.00 37.02 3.41
131 132 4.437390 GGTTGTTCGGCATAATCAGAAGTG 60.437 45.833 0.00 0.00 0.00 3.16
132 133 3.689649 GGTTGTTCGGCATAATCAGAAGT 59.310 43.478 0.00 0.00 0.00 3.01
133 134 3.941483 AGGTTGTTCGGCATAATCAGAAG 59.059 43.478 0.00 0.00 0.00 2.85
134 135 3.950397 AGGTTGTTCGGCATAATCAGAA 58.050 40.909 0.00 0.00 0.00 3.02
135 136 3.627395 AGGTTGTTCGGCATAATCAGA 57.373 42.857 0.00 0.00 0.00 3.27
136 137 4.155826 TGAAAGGTTGTTCGGCATAATCAG 59.844 41.667 0.00 0.00 0.00 2.90
137 138 4.075682 TGAAAGGTTGTTCGGCATAATCA 58.924 39.130 0.00 0.00 0.00 2.57
138 139 4.394920 TCTGAAAGGTTGTTCGGCATAATC 59.605 41.667 0.00 0.00 34.42 1.75
139 140 4.331968 TCTGAAAGGTTGTTCGGCATAAT 58.668 39.130 0.00 0.00 34.42 1.28
140 141 3.745799 TCTGAAAGGTTGTTCGGCATAA 58.254 40.909 0.00 0.00 34.42 1.90
141 142 3.334691 CTCTGAAAGGTTGTTCGGCATA 58.665 45.455 0.00 0.00 34.42 3.14
142 143 2.154462 CTCTGAAAGGTTGTTCGGCAT 58.846 47.619 0.00 0.00 34.42 4.40
143 144 1.593196 CTCTGAAAGGTTGTTCGGCA 58.407 50.000 0.00 0.00 34.42 5.69
144 145 0.238553 GCTCTGAAAGGTTGTTCGGC 59.761 55.000 0.00 0.00 34.42 5.54
145 146 1.593196 TGCTCTGAAAGGTTGTTCGG 58.407 50.000 0.00 0.00 35.54 4.30
146 147 2.599848 CGTTGCTCTGAAAGGTTGTTCG 60.600 50.000 0.00 0.00 0.00 3.95
147 148 2.612212 TCGTTGCTCTGAAAGGTTGTTC 59.388 45.455 0.00 0.00 0.00 3.18
148 149 2.639065 TCGTTGCTCTGAAAGGTTGTT 58.361 42.857 0.00 0.00 0.00 2.83
149 150 2.325583 TCGTTGCTCTGAAAGGTTGT 57.674 45.000 0.00 0.00 0.00 3.32
150 151 2.614057 ACTTCGTTGCTCTGAAAGGTTG 59.386 45.455 0.00 0.00 0.00 3.77
151 152 2.919228 ACTTCGTTGCTCTGAAAGGTT 58.081 42.857 0.00 0.00 0.00 3.50
152 153 2.622064 ACTTCGTTGCTCTGAAAGGT 57.378 45.000 0.00 0.00 0.00 3.50
153 154 5.385617 CAATTACTTCGTTGCTCTGAAAGG 58.614 41.667 0.00 0.00 0.00 3.11
154 155 5.049405 ACCAATTACTTCGTTGCTCTGAAAG 60.049 40.000 0.00 0.00 0.00 2.62
155 156 4.819630 ACCAATTACTTCGTTGCTCTGAAA 59.180 37.500 0.00 0.00 0.00 2.69
156 157 4.385825 ACCAATTACTTCGTTGCTCTGAA 58.614 39.130 0.00 0.00 0.00 3.02
157 158 3.994392 GACCAATTACTTCGTTGCTCTGA 59.006 43.478 0.00 0.00 0.00 3.27
158 159 3.997021 AGACCAATTACTTCGTTGCTCTG 59.003 43.478 0.00 0.00 0.00 3.35
159 160 4.246458 GAGACCAATTACTTCGTTGCTCT 58.754 43.478 0.00 0.00 0.00 4.09
160 161 3.060895 CGAGACCAATTACTTCGTTGCTC 59.939 47.826 0.00 0.00 0.00 4.26
161 162 2.993899 CGAGACCAATTACTTCGTTGCT 59.006 45.455 0.00 0.00 0.00 3.91
162 163 2.474032 GCGAGACCAATTACTTCGTTGC 60.474 50.000 0.00 0.00 0.00 4.17
163 164 2.734606 TGCGAGACCAATTACTTCGTTG 59.265 45.455 0.00 0.00 0.00 4.10
164 165 3.034721 TGCGAGACCAATTACTTCGTT 57.965 42.857 0.00 0.00 0.00 3.85
165 166 2.736144 TGCGAGACCAATTACTTCGT 57.264 45.000 0.00 0.00 0.00 3.85
166 167 2.222819 GCTTGCGAGACCAATTACTTCG 60.223 50.000 4.70 0.00 0.00 3.79
167 168 2.742053 TGCTTGCGAGACCAATTACTTC 59.258 45.455 4.70 0.00 0.00 3.01
168 169 2.778299 TGCTTGCGAGACCAATTACTT 58.222 42.857 4.70 0.00 0.00 2.24
169 170 2.472695 TGCTTGCGAGACCAATTACT 57.527 45.000 4.70 0.00 0.00 2.24
170 171 2.677836 TCATGCTTGCGAGACCAATTAC 59.322 45.455 4.70 0.00 0.00 1.89
171 172 2.984562 TCATGCTTGCGAGACCAATTA 58.015 42.857 4.70 0.00 0.00 1.40
172 173 1.825090 TCATGCTTGCGAGACCAATT 58.175 45.000 4.70 0.00 0.00 2.32
173 174 1.825090 TTCATGCTTGCGAGACCAAT 58.175 45.000 4.70 0.00 0.00 3.16
174 175 1.603456 TTTCATGCTTGCGAGACCAA 58.397 45.000 4.70 0.00 0.00 3.67
175 176 1.469703 CATTTCATGCTTGCGAGACCA 59.530 47.619 4.70 0.00 0.00 4.02
176 177 2.184385 CATTTCATGCTTGCGAGACC 57.816 50.000 4.70 0.00 0.00 3.85
187 188 4.553429 GGACTAAAAACGTCGCATTTCATG 59.447 41.667 0.00 0.00 32.24 3.07
188 189 4.668177 CGGACTAAAAACGTCGCATTTCAT 60.668 41.667 0.00 0.00 32.24 2.57
189 190 3.363182 CGGACTAAAAACGTCGCATTTCA 60.363 43.478 0.00 0.00 32.24 2.69
190 191 3.150731 CGGACTAAAAACGTCGCATTTC 58.849 45.455 0.00 0.00 32.24 2.17
191 192 2.545106 ACGGACTAAAAACGTCGCATTT 59.455 40.909 0.00 0.00 35.77 2.32
192 193 2.137523 ACGGACTAAAAACGTCGCATT 58.862 42.857 0.00 0.00 35.77 3.56
193 194 1.787012 ACGGACTAAAAACGTCGCAT 58.213 45.000 0.00 0.00 35.77 4.73
194 195 2.318578 CTACGGACTAAAAACGTCGCA 58.681 47.619 0.00 0.00 41.53 5.10
195 196 1.058270 GCTACGGACTAAAAACGTCGC 59.942 52.381 0.00 0.00 40.93 5.19
196 197 2.318578 TGCTACGGACTAAAAACGTCG 58.681 47.619 0.00 0.00 41.53 5.12
197 198 4.695200 CTTTGCTACGGACTAAAAACGTC 58.305 43.478 0.00 0.00 41.53 4.34
198 199 3.059393 GCTTTGCTACGGACTAAAAACGT 60.059 43.478 0.00 0.00 43.88 3.99
199 200 3.476181 GCTTTGCTACGGACTAAAAACG 58.524 45.455 0.00 0.00 0.00 3.60
200 201 3.476181 CGCTTTGCTACGGACTAAAAAC 58.524 45.455 0.00 0.00 0.00 2.43
201 202 2.096119 GCGCTTTGCTACGGACTAAAAA 60.096 45.455 0.00 0.00 41.73 1.94
202 203 1.461897 GCGCTTTGCTACGGACTAAAA 59.538 47.619 0.00 0.00 41.73 1.52
203 204 1.073177 GCGCTTTGCTACGGACTAAA 58.927 50.000 0.00 0.00 41.73 1.85
204 205 1.074319 CGCGCTTTGCTACGGACTAA 61.074 55.000 5.56 0.00 43.27 2.24
205 206 1.515519 CGCGCTTTGCTACGGACTA 60.516 57.895 5.56 0.00 43.27 2.59
206 207 2.809601 CGCGCTTTGCTACGGACT 60.810 61.111 5.56 0.00 43.27 3.85
207 208 3.849953 CCGCGCTTTGCTACGGAC 61.850 66.667 5.56 0.00 44.63 4.79
210 211 2.827959 GAAACCCGCGCTTTGCTACG 62.828 60.000 5.56 0.00 43.27 3.51
211 212 1.154282 GAAACCCGCGCTTTGCTAC 60.154 57.895 5.56 0.00 43.27 3.58
212 213 1.296056 GAGAAACCCGCGCTTTGCTA 61.296 55.000 5.56 0.00 43.27 3.49
213 214 2.594592 AGAAACCCGCGCTTTGCT 60.595 55.556 5.56 0.00 43.27 3.91
214 215 2.126850 GAGAAACCCGCGCTTTGC 60.127 61.111 5.56 0.00 41.47 3.68
215 216 2.561373 GGAGAAACCCGCGCTTTG 59.439 61.111 5.56 0.00 0.00 2.77
216 217 3.047877 CGGAGAAACCCGCGCTTT 61.048 61.111 5.56 0.00 43.25 3.51
223 224 3.119602 GGTTGAATTAAGCGGAGAAACCC 60.120 47.826 0.00 0.00 34.64 4.11
224 225 4.092771 GGTTGAATTAAGCGGAGAAACC 57.907 45.455 0.00 0.00 0.00 3.27
233 234 0.519961 ACGCCACGGTTGAATTAAGC 59.480 50.000 0.00 0.00 0.00 3.09
234 235 1.129811 GGACGCCACGGTTGAATTAAG 59.870 52.381 0.00 0.00 0.00 1.85
235 236 1.158434 GGACGCCACGGTTGAATTAA 58.842 50.000 0.00 0.00 0.00 1.40
236 237 0.322322 AGGACGCCACGGTTGAATTA 59.678 50.000 0.00 0.00 0.00 1.40
237 238 0.953960 GAGGACGCCACGGTTGAATT 60.954 55.000 0.00 0.00 0.00 2.17
238 239 1.375523 GAGGACGCCACGGTTGAAT 60.376 57.895 0.00 0.00 0.00 2.57
239 240 2.029964 GAGGACGCCACGGTTGAA 59.970 61.111 0.00 0.00 0.00 2.69
240 241 4.351938 CGAGGACGCCACGGTTGA 62.352 66.667 7.58 0.00 34.18 3.18
241 242 4.351938 TCGAGGACGCCACGGTTG 62.352 66.667 13.53 0.00 38.11 3.77
242 243 4.353437 GTCGAGGACGCCACGGTT 62.353 66.667 13.53 0.00 38.11 4.44
244 245 4.778415 CTGTCGAGGACGCCACGG 62.778 72.222 13.53 0.00 38.11 4.94
245 246 3.948086 GACTGTCGAGGACGCCACG 62.948 68.421 8.83 8.83 38.87 4.94
246 247 2.126424 GACTGTCGAGGACGCCAC 60.126 66.667 0.00 0.00 39.58 5.01
247 248 3.733960 CGACTGTCGAGGACGCCA 61.734 66.667 24.86 0.00 43.74 5.69
248 249 3.429141 TCGACTGTCGAGGACGCC 61.429 66.667 27.26 0.00 44.82 5.68
256 257 2.786854 CATAAGACCTGTCGACTGTCG 58.213 52.381 23.33 23.33 42.10 4.35
257 258 2.094700 TGCATAAGACCTGTCGACTGTC 60.095 50.000 22.99 22.99 34.09 3.51
258 259 1.893137 TGCATAAGACCTGTCGACTGT 59.107 47.619 17.92 13.79 34.09 3.55
259 260 2.263077 GTGCATAAGACCTGTCGACTG 58.737 52.381 17.92 16.32 34.09 3.51
260 261 1.135373 CGTGCATAAGACCTGTCGACT 60.135 52.381 17.92 0.00 34.09 4.18
261 262 1.269166 CGTGCATAAGACCTGTCGAC 58.731 55.000 9.11 9.11 34.09 4.20
262 263 0.172578 CCGTGCATAAGACCTGTCGA 59.827 55.000 0.00 0.00 34.09 4.20
263 264 0.806102 CCCGTGCATAAGACCTGTCG 60.806 60.000 0.00 0.00 34.09 4.35
264 265 1.090052 GCCCGTGCATAAGACCTGTC 61.090 60.000 0.00 0.00 37.47 3.51
265 266 1.078426 GCCCGTGCATAAGACCTGT 60.078 57.895 0.00 0.00 37.47 4.00
266 267 1.078497 TGCCCGTGCATAAGACCTG 60.078 57.895 0.00 0.00 44.23 4.00
267 268 3.399046 TGCCCGTGCATAAGACCT 58.601 55.556 0.00 0.00 44.23 3.85
276 277 0.317519 GTACTTTGTGTTGCCCGTGC 60.318 55.000 0.00 0.00 38.26 5.34
277 278 1.002900 CTGTACTTTGTGTTGCCCGTG 60.003 52.381 0.00 0.00 0.00 4.94
278 279 1.305201 CTGTACTTTGTGTTGCCCGT 58.695 50.000 0.00 0.00 0.00 5.28
279 280 0.591170 CCTGTACTTTGTGTTGCCCG 59.409 55.000 0.00 0.00 0.00 6.13
280 281 1.880027 CTCCTGTACTTTGTGTTGCCC 59.120 52.381 0.00 0.00 0.00 5.36
281 282 1.880027 CCTCCTGTACTTTGTGTTGCC 59.120 52.381 0.00 0.00 0.00 4.52
282 283 2.548480 GTCCTCCTGTACTTTGTGTTGC 59.452 50.000 0.00 0.00 0.00 4.17
283 284 3.804036 TGTCCTCCTGTACTTTGTGTTG 58.196 45.455 0.00 0.00 0.00 3.33
284 285 3.744530 GCTGTCCTCCTGTACTTTGTGTT 60.745 47.826 0.00 0.00 0.00 3.32
285 286 2.224305 GCTGTCCTCCTGTACTTTGTGT 60.224 50.000 0.00 0.00 0.00 3.72
286 287 2.224281 TGCTGTCCTCCTGTACTTTGTG 60.224 50.000 0.00 0.00 0.00 3.33
287 288 2.047061 TGCTGTCCTCCTGTACTTTGT 58.953 47.619 0.00 0.00 0.00 2.83
288 289 2.808543 GTTGCTGTCCTCCTGTACTTTG 59.191 50.000 0.00 0.00 0.00 2.77
289 290 2.706190 AGTTGCTGTCCTCCTGTACTTT 59.294 45.455 0.00 0.00 0.00 2.66
290 291 2.037772 CAGTTGCTGTCCTCCTGTACTT 59.962 50.000 0.00 0.00 0.00 2.24
291 292 1.620819 CAGTTGCTGTCCTCCTGTACT 59.379 52.381 0.00 0.00 0.00 2.73
292 293 1.618837 TCAGTTGCTGTCCTCCTGTAC 59.381 52.381 0.00 0.00 32.61 2.90
293 294 2.009681 TCAGTTGCTGTCCTCCTGTA 57.990 50.000 0.00 0.00 32.61 2.74
294 295 1.071385 CTTCAGTTGCTGTCCTCCTGT 59.929 52.381 0.00 0.00 32.61 4.00
295 296 1.805869 CTTCAGTTGCTGTCCTCCTG 58.194 55.000 0.00 0.00 32.61 3.86
296 297 0.036022 GCTTCAGTTGCTGTCCTCCT 59.964 55.000 0.00 0.00 32.61 3.69
297 298 0.036022 AGCTTCAGTTGCTGTCCTCC 59.964 55.000 0.00 0.00 39.56 4.30
298 299 2.615869 CTAGCTTCAGTTGCTGTCCTC 58.384 52.381 0.00 0.00 41.32 3.71
299 300 1.338579 GCTAGCTTCAGTTGCTGTCCT 60.339 52.381 7.70 0.00 41.32 3.85
300 301 1.082690 GCTAGCTTCAGTTGCTGTCC 58.917 55.000 7.70 0.00 41.32 4.02
301 302 0.718343 CGCTAGCTTCAGTTGCTGTC 59.282 55.000 13.93 0.00 41.32 3.51
302 303 0.671781 CCGCTAGCTTCAGTTGCTGT 60.672 55.000 13.93 0.00 41.32 4.40
303 304 0.671781 ACCGCTAGCTTCAGTTGCTG 60.672 55.000 13.93 0.00 41.32 4.41
344 348 3.234630 TACTGCACCGTGGTCCAGC 62.235 63.158 9.90 1.46 37.41 4.85
357 361 4.278956 CCGGTTGACTGGTACTGC 57.721 61.111 0.00 0.00 37.62 4.40
383 391 3.427233 CGTAGGCTACAGGTTAGACACAC 60.427 52.174 23.46 0.00 0.00 3.82
421 429 2.902705 TCTTGTTGTCTTGTACCGCT 57.097 45.000 0.00 0.00 0.00 5.52
422 430 3.326747 AGATCTTGTTGTCTTGTACCGC 58.673 45.455 0.00 0.00 0.00 5.68
423 431 5.269459 CAAGATCTTGTTGTCTTGTACCG 57.731 43.478 24.65 0.00 43.87 4.02
434 443 3.667497 TCTCTGCGTCAAGATCTTGTT 57.333 42.857 29.80 0.00 41.16 2.83
438 447 2.159448 CGTCTTCTCTGCGTCAAGATCT 60.159 50.000 0.00 0.00 0.00 2.75
476 485 8.517878 GGTTGTAGATGCTCTTAATATACCGTA 58.482 37.037 0.00 0.00 0.00 4.02
477 486 7.014905 TGGTTGTAGATGCTCTTAATATACCGT 59.985 37.037 0.00 0.00 0.00 4.83
478 487 7.328737 GTGGTTGTAGATGCTCTTAATATACCG 59.671 40.741 0.00 0.00 0.00 4.02
480 489 9.542462 TTGTGGTTGTAGATGCTCTTAATATAC 57.458 33.333 0.00 0.00 0.00 1.47
481 490 9.542462 GTTGTGGTTGTAGATGCTCTTAATATA 57.458 33.333 0.00 0.00 0.00 0.86
482 491 8.267894 AGTTGTGGTTGTAGATGCTCTTAATAT 58.732 33.333 0.00 0.00 0.00 1.28
483 492 7.620880 AGTTGTGGTTGTAGATGCTCTTAATA 58.379 34.615 0.00 0.00 0.00 0.98
484 493 6.476378 AGTTGTGGTTGTAGATGCTCTTAAT 58.524 36.000 0.00 0.00 0.00 1.40
485 494 5.865085 AGTTGTGGTTGTAGATGCTCTTAA 58.135 37.500 0.00 0.00 0.00 1.85
494 503 2.605837 TTGCGAGTTGTGGTTGTAGA 57.394 45.000 0.00 0.00 0.00 2.59
525 534 4.444838 TCCGGTCATTGTCCGCGG 62.445 66.667 22.12 22.12 45.71 6.46
526 535 3.186047 GTCCGGTCATTGTCCGCG 61.186 66.667 15.60 0.00 45.71 6.46
527 536 2.047655 TGTCCGGTCATTGTCCGC 60.048 61.111 15.60 5.18 45.71 5.54
530 539 0.602638 TGTGCTGTCCGGTCATTGTC 60.603 55.000 0.00 0.00 0.00 3.18
531 540 0.884704 GTGTGCTGTCCGGTCATTGT 60.885 55.000 0.00 0.00 0.00 2.71
533 542 0.973632 TAGTGTGCTGTCCGGTCATT 59.026 50.000 0.00 0.00 0.00 2.57
534 543 0.973632 TTAGTGTGCTGTCCGGTCAT 59.026 50.000 0.00 0.00 0.00 3.06
535 544 0.753867 TTTAGTGTGCTGTCCGGTCA 59.246 50.000 0.00 0.00 0.00 4.02
537 546 2.335316 TTTTTAGTGTGCTGTCCGGT 57.665 45.000 0.00 0.00 0.00 5.28
538 547 2.159707 CGATTTTTAGTGTGCTGTCCGG 60.160 50.000 0.00 0.00 0.00 5.14
540 549 4.483476 AACGATTTTTAGTGTGCTGTCC 57.517 40.909 0.00 0.00 0.00 4.02
541 550 5.968848 TGAAAACGATTTTTAGTGTGCTGTC 59.031 36.000 0.00 0.00 34.94 3.51
545 554 6.399626 GTTGTGAAAACGATTTTTAGTGTGC 58.600 36.000 0.00 0.00 34.94 4.57
569 578 4.535781 TGATTCACAAATGGGGTATCTGG 58.464 43.478 0.00 0.00 0.00 3.86
571 580 6.017211 TGATGATTCACAAATGGGGTATCT 57.983 37.500 0.00 0.00 0.00 1.98
598 2210 6.545567 AGGGTTCATGCATGTGATAATATGA 58.454 36.000 25.43 0.54 0.00 2.15
607 2219 6.698008 TTTAGATTAGGGTTCATGCATGTG 57.302 37.500 25.43 3.46 0.00 3.21
608 2220 6.183360 CGTTTTAGATTAGGGTTCATGCATGT 60.183 38.462 25.43 9.20 0.00 3.21
619 2233 3.381949 CGAGCTCCGTTTTAGATTAGGG 58.618 50.000 8.47 0.00 0.00 3.53
622 2236 2.482490 GGCCGAGCTCCGTTTTAGATTA 60.482 50.000 8.47 0.00 36.31 1.75
649 2263 2.970379 ATCGGACATGGGCACAGCA 61.970 57.895 0.00 0.00 0.00 4.41
652 2266 2.135903 AACCATCGGACATGGGCACA 62.136 55.000 0.00 0.00 43.32 4.57
656 2270 0.323360 AACCAACCATCGGACATGGG 60.323 55.000 6.57 0.00 43.32 4.00
664 2278 4.114997 GGGCGCAACCAACCATCG 62.115 66.667 10.83 0.00 42.05 3.84
666 2280 4.966787 ACGGGCGCAACCAACCAT 62.967 61.111 10.83 0.00 42.05 3.55
683 2297 3.815809 AGGACCAGACAAACATTTTCGA 58.184 40.909 0.00 0.00 0.00 3.71
685 2299 7.595130 GTCAAATAGGACCAGACAAACATTTTC 59.405 37.037 0.00 0.00 0.00 2.29
686 2300 7.069331 TGTCAAATAGGACCAGACAAACATTTT 59.931 33.333 0.00 0.00 36.39 1.82
694 2308 5.245531 GTCATTGTCAAATAGGACCAGACA 58.754 41.667 0.00 0.00 36.97 3.41
700 2314 2.943033 CCCGGTCATTGTCAAATAGGAC 59.057 50.000 0.00 0.00 38.29 3.85
702 2316 1.676006 GCCCGGTCATTGTCAAATAGG 59.324 52.381 0.00 0.00 0.00 2.57
703 2317 2.355756 CTGCCCGGTCATTGTCAAATAG 59.644 50.000 0.00 0.00 0.00 1.73
709 2323 3.134127 GGCTGCCCGGTCATTGTC 61.134 66.667 7.66 0.00 0.00 3.18
710 2324 4.740822 GGGCTGCCCGGTCATTGT 62.741 66.667 24.16 0.00 32.13 2.71
768 2433 2.762327 GGTGTCCGGAATGGTTAGAGTA 59.238 50.000 5.23 0.00 39.52 2.59
769 2434 1.553704 GGTGTCCGGAATGGTTAGAGT 59.446 52.381 5.23 0.00 39.52 3.24
786 2451 2.277591 TAACCGTCCCAGACCGGTG 61.278 63.158 14.63 0.00 38.60 4.94
790 2455 1.080298 CGTGTAACCGTCCCAGACC 60.080 63.158 0.00 0.00 0.00 3.85
795 2460 0.249826 TCAAACCGTGTAACCGTCCC 60.250 55.000 0.00 0.00 0.00 4.46
897 2563 2.398554 CGGGTTCACATGGCTTCCG 61.399 63.158 0.00 0.00 0.00 4.30
1149 2829 4.514585 GTGGTGGTGGTGGTGCCA 62.515 66.667 0.00 0.00 46.95 4.92
1375 3070 2.426023 GTTGGTGCTCCAGACGGT 59.574 61.111 7.68 0.00 45.22 4.83
1450 3145 1.076265 TCCGACCGTCTGGATCCAT 60.076 57.895 16.63 0.00 39.21 3.41
1804 3499 4.347360 TGCCATCATAATCCAGAGTCAG 57.653 45.455 0.00 0.00 0.00 3.51
1860 3555 0.902531 TCCAAGAGACCGACCAATCC 59.097 55.000 0.00 0.00 0.00 3.01
2014 3709 1.268352 TGTCTTGTTTACATTGGGCGC 59.732 47.619 0.00 0.00 0.00 6.53
2039 3734 1.478916 GTCTTCTCCTGTAGTCCCAGC 59.521 57.143 0.00 0.00 0.00 4.85
2047 3742 2.325484 TGCCTTGTGTCTTCTCCTGTA 58.675 47.619 0.00 0.00 0.00 2.74
2514 4245 7.364585 CCTTCATCTGTAATCTCTGGTCTTCTT 60.365 40.741 0.00 0.00 0.00 2.52
2541 4272 9.445878 CTGAACTGGCTTGATATTATCATGTAT 57.554 33.333 16.56 4.20 39.39 2.29
2566 4297 6.670902 TGTAACTCCTTGTAGCTAAATACCCT 59.329 38.462 0.00 0.00 0.00 4.34
2568 4299 7.779073 TCTGTAACTCCTTGTAGCTAAATACC 58.221 38.462 0.00 0.00 0.00 2.73
2569 4300 9.303537 CTTCTGTAACTCCTTGTAGCTAAATAC 57.696 37.037 0.00 0.00 0.00 1.89
2620 4351 3.107601 CTCCTGATCCACCACTTCCTAA 58.892 50.000 0.00 0.00 0.00 2.69
2682 4414 3.623060 TCGCATCATTTAGCTTCTTCACC 59.377 43.478 0.00 0.00 0.00 4.02
2702 4434 0.388659 CTCCTGCTCTCCTTGGATCG 59.611 60.000 0.00 0.00 0.00 3.69
2894 4629 5.410067 CAACTGCAATATTGTACCTTTGGG 58.590 41.667 16.61 1.78 38.88 4.12
3300 5035 3.619733 CGACAAACTCCAGGATCCATGAA 60.620 47.826 15.82 0.00 0.00 2.57
3309 5044 4.641094 AGTCTATAGTCGACAAACTCCAGG 59.359 45.833 19.50 0.00 33.89 4.45
3386 5785 3.449018 GCTCCTCTCTTCTTCCACACATA 59.551 47.826 0.00 0.00 0.00 2.29
3429 5828 2.158957 TGAAAGCAGAGTTTCGACCACT 60.159 45.455 0.00 0.00 38.99 4.00
3682 6199 8.088981 TCGATTTATTAGCTCCTAAGGATCAAC 58.911 37.037 0.00 0.00 29.02 3.18
3701 6223 6.282167 TGTATTCCGGTTTGCTATCGATTTA 58.718 36.000 1.71 0.00 0.00 1.40
3702 6224 5.120399 TGTATTCCGGTTTGCTATCGATTT 58.880 37.500 1.71 0.00 0.00 2.17
3703 6225 4.699637 TGTATTCCGGTTTGCTATCGATT 58.300 39.130 1.71 0.00 0.00 3.34
3717 6239 7.637709 TTCATGTTAGATTCGATGTATTCCG 57.362 36.000 0.00 0.00 0.00 4.30
3724 6246 8.370493 ACCTACAATTCATGTTAGATTCGATG 57.630 34.615 0.00 0.00 43.63 3.84
3799 6330 9.920946 AGTATTCTGTTACATTGGGTTCATTAT 57.079 29.630 0.00 0.00 0.00 1.28
3890 6431 1.856265 GCCTAACACTGGTGCACTGC 61.856 60.000 17.98 0.83 0.00 4.40
3897 6438 4.388499 CGCCGGCCTAACACTGGT 62.388 66.667 23.46 0.00 35.84 4.00
3898 6439 4.388499 ACGCCGGCCTAACACTGG 62.388 66.667 23.46 5.65 36.57 4.00
3899 6440 2.813908 GACGCCGGCCTAACACTG 60.814 66.667 23.46 6.49 0.00 3.66
3900 6441 4.078516 GGACGCCGGCCTAACACT 62.079 66.667 23.46 0.00 0.00 3.55
4114 6655 2.677003 CGTGACGTGCATTGGGACC 61.677 63.158 0.00 0.00 30.51 4.46
4287 6828 4.166888 TCCTCCGCTGGCTCATGC 62.167 66.667 0.00 0.00 38.76 4.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.