Multiple sequence alignment - TraesCS7D01G123000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G123000 chr7D 100.000 5779 0 0 1 5779 76928403 76934181 0.000000e+00 10672.0
1 TraesCS7D01G123000 chr7D 85.563 3491 401 47 2327 5772 76920128 76923560 0.000000e+00 3559.0
2 TraesCS7D01G123000 chr7D 82.319 3416 506 52 1510 4864 76625192 76621814 0.000000e+00 2872.0
3 TraesCS7D01G123000 chr7D 84.056 2766 392 30 1511 4255 76635847 76633110 0.000000e+00 2619.0
4 TraesCS7D01G123000 chr7D 83.509 2371 338 34 2298 4657 76744370 76746698 0.000000e+00 2163.0
5 TraesCS7D01G123000 chr7D 83.620 2326 344 27 2331 4647 76785019 76787316 0.000000e+00 2150.0
6 TraesCS7D01G123000 chr7D 82.733 2056 285 40 2807 4834 77045885 77047898 0.000000e+00 1766.0
7 TraesCS7D01G123000 chr7D 90.685 934 84 3 1336 2267 76784059 76784991 0.000000e+00 1240.0
8 TraesCS7D01G123000 chr7D 85.982 1120 117 21 1360 2477 76971236 76972317 0.000000e+00 1162.0
9 TraesCS7D01G123000 chr7D 85.020 1008 121 22 1272 2269 76743390 76744377 0.000000e+00 998.0
10 TraesCS7D01G123000 chr7D 85.840 911 104 17 1360 2269 76919223 76920109 0.000000e+00 944.0
11 TraesCS7D01G123000 chr7D 84.216 963 133 11 2298 3249 7561874 7562828 0.000000e+00 918.0
12 TraesCS7D01G123000 chr7D 91.053 570 19 11 449 1008 76782944 76783491 0.000000e+00 741.0
13 TraesCS7D01G123000 chr7D 79.861 576 99 13 4321 4884 76633017 76632447 6.970000e-109 405.0
14 TraesCS7D01G123000 chr7D 92.126 254 13 4 531 782 77037508 77037756 9.210000e-93 351.0
15 TraesCS7D01G123000 chr7D 97.059 204 4 1 335 538 77036549 77036750 5.540000e-90 342.0
16 TraesCS7D01G123000 chr7D 90.347 259 21 2 1 256 76945002 76945259 2.580000e-88 337.0
17 TraesCS7D01G123000 chr7D 92.050 239 18 1 18 256 77036048 77036285 9.280000e-88 335.0
18 TraesCS7D01G123000 chr7D 85.627 327 20 7 822 1125 77037751 77038073 9.340000e-83 318.0
19 TraesCS7D01G123000 chr7D 83.196 363 40 7 5388 5732 77048587 77048946 4.350000e-81 313.0
20 TraesCS7D01G123000 chr7D 83.108 296 36 10 5390 5677 76958468 76958757 2.070000e-64 257.0
21 TraesCS7D01G123000 chr7D 85.890 163 16 5 96 256 76953363 76953520 3.580000e-37 167.0
22 TraesCS7D01G123000 chr7D 86.429 140 14 4 119 256 76782312 76782448 1.300000e-31 148.0
23 TraesCS7D01G123000 chr7D 87.500 80 6 4 348 424 76782889 76782967 7.980000e-14 89.8
24 TraesCS7D01G123000 chr7D 82.558 86 1 5 1039 1113 76783504 76783586 4.830000e-06 63.9
25 TraesCS7D01G123000 chr7D 75.839 149 20 12 536 678 76945882 76946020 1.740000e-05 62.1
26 TraesCS7D01G123000 chr7B 84.887 3626 437 58 1312 4865 23515960 23519546 0.000000e+00 3557.0
27 TraesCS7D01G123000 chr7B 84.266 3502 466 57 1360 4825 23524431 23527883 0.000000e+00 3336.0
28 TraesCS7D01G123000 chr7B 84.495 3373 427 45 1510 4865 23933369 23936662 0.000000e+00 3243.0
29 TraesCS7D01G123000 chr7B 83.983 2666 355 44 2327 4958 23958834 23961461 0.000000e+00 2492.0
30 TraesCS7D01G123000 chr7B 87.753 2025 193 19 3346 5335 23639655 23641659 0.000000e+00 2314.0
31 TraesCS7D01G123000 chr7B 83.169 2537 348 49 2327 4834 23597544 23600030 0.000000e+00 2246.0
32 TraesCS7D01G123000 chr7B 83.668 1941 280 17 2327 4255 23939358 23941273 0.000000e+00 1794.0
33 TraesCS7D01G123000 chr7B 88.158 1064 103 5 2298 3360 23637454 23638495 0.000000e+00 1245.0
34 TraesCS7D01G123000 chr7B 95.896 268 9 2 5514 5779 23641673 23641940 3.200000e-117 433.0
35 TraesCS7D01G123000 chr7B 82.632 380 59 5 5372 5747 23587029 23587405 4.320000e-86 329.0
36 TraesCS7D01G123000 chr7B 77.453 479 60 28 5340 5779 23937292 23937761 5.790000e-60 243.0
37 TraesCS7D01G123000 chr7B 83.983 231 35 2 5377 5606 23926134 23926363 2.710000e-53 220.0
38 TraesCS7D01G123000 chr7B 81.349 252 34 7 1 250 23522587 23522827 5.910000e-45 193.0
39 TraesCS7D01G123000 chr7B 82.653 98 12 3 104 200 23522734 23522827 1.330000e-11 82.4
40 TraesCS7D01G123000 chr7B 94.595 37 2 0 1139 1175 653246665 653246629 2.250000e-04 58.4
41 TraesCS7D01G123000 chr7A 84.161 2355 327 33 2298 4640 80862791 80865111 0.000000e+00 2241.0
42 TraesCS7D01G123000 chr7A 85.315 1001 118 18 1276 2269 80861820 80862798 0.000000e+00 1007.0
43 TraesCS7D01G123000 chr7A 90.411 73 7 0 1148 1220 143144180 143144108 4.770000e-16 97.1
44 TraesCS7D01G123000 chr7A 97.872 47 1 0 1177 1223 451586845 451586891 1.330000e-11 82.4
45 TraesCS7D01G123000 chr4A 86.917 879 106 7 2319 3189 731616029 731615152 0.000000e+00 977.0
46 TraesCS7D01G123000 chr1B 85.135 222 12 6 799 1008 136624547 136624759 2.110000e-49 207.0
47 TraesCS7D01G123000 chr1B 97.222 36 1 0 1140 1175 180297065 180297100 1.740000e-05 62.1
48 TraesCS7D01G123000 chr1B 100.000 29 0 0 1039 1067 136624772 136624800 3.000000e-03 54.7
49 TraesCS7D01G123000 chr1D 93.506 77 3 2 1148 1222 135679524 135679600 4.730000e-21 113.0
50 TraesCS7D01G123000 chr6B 93.056 72 3 1 1148 1217 183753110 183753181 2.850000e-18 104.0
51 TraesCS7D01G123000 chr5D 90.244 82 4 4 1148 1228 424622635 424622557 2.850000e-18 104.0
52 TraesCS7D01G123000 chr5D 92.857 70 5 0 1148 1217 377299843 377299912 1.020000e-17 102.0
53 TraesCS7D01G123000 chr5D 96.226 53 1 1 1170 1222 560011254 560011203 1.030000e-12 86.1
54 TraesCS7D01G123000 chr3B 86.667 75 6 3 1148 1218 349269367 349269441 4.800000e-11 80.5
55 TraesCS7D01G123000 chrUn 86.301 73 8 2 1148 1220 134257779 134257849 1.730000e-10 78.7
56 TraesCS7D01G123000 chr5B 95.556 45 1 1 1024 1067 659982785 659982829 2.890000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G123000 chr7D 76928403 76934181 5778 False 10672.000000 10672 100.000000 1 5779 1 chr7D.!!$F2 5778
1 TraesCS7D01G123000 chr7D 76621814 76625192 3378 True 2872.000000 2872 82.319000 1510 4864 1 chr7D.!!$R1 3354
2 TraesCS7D01G123000 chr7D 76919223 76923560 4337 False 2251.500000 3559 85.701500 1360 5772 2 chr7D.!!$F8 4412
3 TraesCS7D01G123000 chr7D 76743390 76746698 3308 False 1580.500000 2163 84.264500 1272 4657 2 chr7D.!!$F6 3385
4 TraesCS7D01G123000 chr7D 76632447 76635847 3400 True 1512.000000 2619 81.958500 1511 4884 2 chr7D.!!$R2 3373
5 TraesCS7D01G123000 chr7D 76971236 76972317 1081 False 1162.000000 1162 85.982000 1360 2477 1 chr7D.!!$F5 1117
6 TraesCS7D01G123000 chr7D 77045885 77048946 3061 False 1039.500000 1766 82.964500 2807 5732 2 chr7D.!!$F11 2925
7 TraesCS7D01G123000 chr7D 7561874 7562828 954 False 918.000000 918 84.216000 2298 3249 1 chr7D.!!$F1 951
8 TraesCS7D01G123000 chr7D 76782312 76787316 5004 False 738.783333 2150 86.974167 119 4647 6 chr7D.!!$F7 4528
9 TraesCS7D01G123000 chr7D 77036048 77038073 2025 False 336.500000 351 91.715500 18 1125 4 chr7D.!!$F10 1107
10 TraesCS7D01G123000 chr7B 23958834 23961461 2627 False 2492.000000 2492 83.983000 2327 4958 1 chr7B.!!$F4 2631
11 TraesCS7D01G123000 chr7B 23597544 23600030 2486 False 2246.000000 2246 83.169000 2327 4834 1 chr7B.!!$F2 2507
12 TraesCS7D01G123000 chr7B 23515960 23527883 11923 False 1792.100000 3557 83.288750 1 4865 4 chr7B.!!$F5 4864
13 TraesCS7D01G123000 chr7B 23933369 23941273 7904 False 1760.000000 3243 81.872000 1510 5779 3 chr7B.!!$F7 4269
14 TraesCS7D01G123000 chr7B 23637454 23641940 4486 False 1330.666667 2314 90.602333 2298 5779 3 chr7B.!!$F6 3481
15 TraesCS7D01G123000 chr7A 80861820 80865111 3291 False 1624.000000 2241 84.738000 1276 4640 2 chr7A.!!$F2 3364
16 TraesCS7D01G123000 chr4A 731615152 731616029 877 True 977.000000 977 86.917000 2319 3189 1 chr4A.!!$R1 870

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
292 293 0.041135 GATTAGAGCCGAGTCCGACG 60.041 60.000 0.00 0.00 38.22 5.12 F
1254 2651 0.035915 GGGAGCCCACTGAAGACTTC 60.036 60.000 8.34 8.34 35.81 3.01 F
1715 3164 0.110104 GGAGCCAGAGCAATGCCTAT 59.890 55.000 0.00 0.00 43.56 2.57 F
3095 4574 0.401356 TGCATGACTTGGCCAGAGAA 59.599 50.000 18.22 8.84 0.00 2.87 F
4346 15472 1.000274 ACATCCCTTGAAAGTTTGCGC 60.000 47.619 0.00 0.00 0.00 6.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1622 3071 0.029700 TTTCGCAGTCGTCGTTGAGA 59.970 50.0 0.00 0.0 36.96 3.27 R
3149 4628 1.079503 GCAGGTGACGGACATTTCTC 58.920 55.0 0.00 0.0 0.00 2.87 R
3151 4630 1.234821 TTGCAGGTGACGGACATTTC 58.765 50.0 0.00 0.0 0.00 2.17 R
4498 15624 0.250234 TTCCTCCATCGCTGGACAAG 59.750 55.0 3.28 0.0 46.95 3.16 R
5496 17023 0.782384 CACGCAACTTGTACGGAGAC 59.218 55.0 3.36 0.0 0.00 3.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 2.237392 CCGATCTTGTCCCTTTTCCTCT 59.763 50.000 0.00 0.00 0.00 3.69
47 48 3.716872 TCTTGTCCCTTTTCCTCTCTGTT 59.283 43.478 0.00 0.00 0.00 3.16
48 49 4.166144 TCTTGTCCCTTTTCCTCTCTGTTT 59.834 41.667 0.00 0.00 0.00 2.83
52 53 5.548056 TGTCCCTTTTCCTCTCTGTTTATCT 59.452 40.000 0.00 0.00 0.00 1.98
61 62 6.990798 TCCTCTCTGTTTATCTATGATGCTG 58.009 40.000 0.00 0.00 0.00 4.41
65 66 6.872547 TCTCTGTTTATCTATGATGCTGATGC 59.127 38.462 0.00 0.00 40.20 3.91
120 121 6.446781 AAATCCAGTTGCTCTGATGTATTG 57.553 37.500 10.22 0.00 46.27 1.90
144 145 6.319405 TGATCGATTGATGATGTCCACAATTT 59.681 34.615 0.00 0.00 34.09 1.82
179 180 5.289595 TGCACTATTGGACTATTGATCGAC 58.710 41.667 0.00 0.00 0.00 4.20
180 181 4.686554 GCACTATTGGACTATTGATCGACC 59.313 45.833 0.00 0.00 0.00 4.79
186 187 2.329379 GACTATTGATCGACCGATGCC 58.671 52.381 9.83 0.00 34.60 4.40
202 203 3.611530 CGATGCCGTCCAAAATTCAGTTT 60.612 43.478 0.00 0.00 0.00 2.66
248 249 3.803021 GCACCATGCTGTCCAAAATTTCA 60.803 43.478 0.00 0.00 40.96 2.69
256 257 4.321899 GCTGTCCAAAATTTCAGTGGCATA 60.322 41.667 2.93 0.00 32.10 3.14
257 258 5.132897 TGTCCAAAATTTCAGTGGCATAC 57.867 39.130 2.93 0.00 32.10 2.39
276 277 5.163519 GCATACTGGCCTTTTACATGTGATT 60.164 40.000 9.11 0.00 0.00 2.57
277 278 6.039270 GCATACTGGCCTTTTACATGTGATTA 59.961 38.462 9.11 0.00 0.00 1.75
278 279 7.642669 CATACTGGCCTTTTACATGTGATTAG 58.357 38.462 9.11 1.08 0.00 1.73
279 280 5.815581 ACTGGCCTTTTACATGTGATTAGA 58.184 37.500 9.11 0.00 0.00 2.10
280 281 5.882557 ACTGGCCTTTTACATGTGATTAGAG 59.117 40.000 9.11 0.00 0.00 2.43
281 282 4.640201 TGGCCTTTTACATGTGATTAGAGC 59.360 41.667 9.11 2.72 0.00 4.09
282 283 4.036852 GGCCTTTTACATGTGATTAGAGCC 59.963 45.833 9.11 8.37 0.00 4.70
283 284 4.260784 GCCTTTTACATGTGATTAGAGCCG 60.261 45.833 9.11 0.00 0.00 5.52
285 286 5.235186 CCTTTTACATGTGATTAGAGCCGAG 59.765 44.000 9.11 0.00 0.00 4.63
287 288 3.444703 ACATGTGATTAGAGCCGAGTC 57.555 47.619 0.00 0.00 0.00 3.36
288 289 2.101582 ACATGTGATTAGAGCCGAGTCC 59.898 50.000 0.00 0.00 0.00 3.85
289 290 0.738975 TGTGATTAGAGCCGAGTCCG 59.261 55.000 0.00 0.00 0.00 4.79
290 291 1.022735 GTGATTAGAGCCGAGTCCGA 58.977 55.000 0.00 0.00 38.22 4.55
291 292 1.022735 TGATTAGAGCCGAGTCCGAC 58.977 55.000 0.00 0.00 38.22 4.79
292 293 0.041135 GATTAGAGCCGAGTCCGACG 60.041 60.000 0.00 0.00 38.22 5.12
293 294 2.061182 ATTAGAGCCGAGTCCGACGC 62.061 60.000 0.00 0.00 38.22 5.19
317 358 2.421952 CCTGGGGTGTCTGATGTATTGG 60.422 54.545 0.00 0.00 0.00 3.16
426 777 4.022935 CAGTGCCAGCTAAACAGATTTCAA 60.023 41.667 0.00 0.00 0.00 2.69
687 1804 7.631822 CATGAAAGAATCATTTTGCAAACACA 58.368 30.769 12.39 0.00 46.85 3.72
765 1883 5.948992 AAAAAGTCTTGACACATAGGAGC 57.051 39.130 3.49 0.00 0.00 4.70
782 1934 0.828677 AGCGCCTCCCGTTATTTACT 59.171 50.000 2.29 0.00 39.71 2.24
783 1935 1.208776 AGCGCCTCCCGTTATTTACTT 59.791 47.619 2.29 0.00 39.71 2.24
784 1936 1.596260 GCGCCTCCCGTTATTTACTTC 59.404 52.381 0.00 0.00 39.71 3.01
785 1937 2.740904 GCGCCTCCCGTTATTTACTTCT 60.741 50.000 0.00 0.00 39.71 2.85
786 1938 3.121544 CGCCTCCCGTTATTTACTTCTC 58.878 50.000 0.00 0.00 0.00 2.87
787 1939 3.429822 CGCCTCCCGTTATTTACTTCTCA 60.430 47.826 0.00 0.00 0.00 3.27
788 1940 4.704965 GCCTCCCGTTATTTACTTCTCAT 58.295 43.478 0.00 0.00 0.00 2.90
789 1941 4.750598 GCCTCCCGTTATTTACTTCTCATC 59.249 45.833 0.00 0.00 0.00 2.92
790 1942 5.453480 GCCTCCCGTTATTTACTTCTCATCT 60.453 44.000 0.00 0.00 0.00 2.90
791 1943 6.239232 GCCTCCCGTTATTTACTTCTCATCTA 60.239 42.308 0.00 0.00 0.00 1.98
792 1944 7.686127 GCCTCCCGTTATTTACTTCTCATCTAA 60.686 40.741 0.00 0.00 0.00 2.10
793 1945 8.202137 CCTCCCGTTATTTACTTCTCATCTAAA 58.798 37.037 0.00 0.00 0.00 1.85
794 1946 8.937634 TCCCGTTATTTACTTCTCATCTAAAC 57.062 34.615 0.00 0.00 0.00 2.01
795 1947 8.533657 TCCCGTTATTTACTTCTCATCTAAACA 58.466 33.333 0.00 0.00 0.00 2.83
796 1948 8.601476 CCCGTTATTTACTTCTCATCTAAACAC 58.399 37.037 0.00 0.00 0.00 3.32
797 1949 8.601476 CCGTTATTTACTTCTCATCTAAACACC 58.399 37.037 0.00 0.00 0.00 4.16
798 1950 9.146984 CGTTATTTACTTCTCATCTAAACACCA 57.853 33.333 0.00 0.00 0.00 4.17
800 1952 7.617041 ATTTACTTCTCATCTAAACACCAGC 57.383 36.000 0.00 0.00 0.00 4.85
801 1953 4.623932 ACTTCTCATCTAAACACCAGCA 57.376 40.909 0.00 0.00 0.00 4.41
802 1954 5.171339 ACTTCTCATCTAAACACCAGCAT 57.829 39.130 0.00 0.00 0.00 3.79
803 1955 5.564550 ACTTCTCATCTAAACACCAGCATT 58.435 37.500 0.00 0.00 0.00 3.56
804 1956 5.645497 ACTTCTCATCTAAACACCAGCATTC 59.355 40.000 0.00 0.00 0.00 2.67
805 1957 5.164620 TCTCATCTAAACACCAGCATTCA 57.835 39.130 0.00 0.00 0.00 2.57
806 1958 5.748402 TCTCATCTAAACACCAGCATTCAT 58.252 37.500 0.00 0.00 0.00 2.57
807 1959 5.587443 TCTCATCTAAACACCAGCATTCATG 59.413 40.000 0.00 0.00 0.00 3.07
838 1990 2.355756 CCACATTTACCAGGCATCTTCG 59.644 50.000 0.00 0.00 0.00 3.79
862 2014 2.675056 GCCGCAGCAGTCAAGTCAG 61.675 63.158 0.00 0.00 39.53 3.51
914 2066 0.111061 TTGGAGGACAAGCACAGCAT 59.889 50.000 0.00 0.00 33.18 3.79
922 2074 0.179171 CAAGCACAGCATAGCACAGC 60.179 55.000 0.00 0.00 0.00 4.40
925 2077 1.638388 GCACAGCATAGCACAGCGAA 61.638 55.000 0.00 0.00 35.48 4.70
941 2093 0.318441 CGAAAGTGGTGCTGGAGAGA 59.682 55.000 0.00 0.00 0.00 3.10
942 2094 1.671261 CGAAAGTGGTGCTGGAGAGAG 60.671 57.143 0.00 0.00 0.00 3.20
943 2095 1.620819 GAAAGTGGTGCTGGAGAGAGA 59.379 52.381 0.00 0.00 0.00 3.10
944 2096 0.972883 AAGTGGTGCTGGAGAGAGAC 59.027 55.000 0.00 0.00 0.00 3.36
1001 2163 2.234613 CGGTTCACGCTGTTCACAT 58.765 52.632 0.00 0.00 34.82 3.21
1010 2172 2.032894 ACGCTGTTCACATGAAAAGTCG 60.033 45.455 18.68 18.68 40.63 4.18
1014 2176 3.750371 TGTTCACATGAAAAGTCGGGAT 58.250 40.909 0.00 0.00 35.58 3.85
1016 2178 2.710377 TCACATGAAAAGTCGGGATGG 58.290 47.619 0.00 0.00 0.00 3.51
1113 2299 6.094603 ACCTAGTGCAAGATTAGCAAGAAATG 59.905 38.462 0.00 0.00 44.64 2.32
1116 2302 7.081526 AGTGCAAGATTAGCAAGAAATGTAG 57.918 36.000 0.00 0.00 44.64 2.74
1117 2303 6.881065 AGTGCAAGATTAGCAAGAAATGTAGA 59.119 34.615 0.00 0.00 44.64 2.59
1147 2364 7.800300 ACCTAGTTCTTGGAAATTAGTCTCT 57.200 36.000 7.24 0.00 0.00 3.10
1148 2365 8.896722 ACCTAGTTCTTGGAAATTAGTCTCTA 57.103 34.615 7.24 0.00 0.00 2.43
1149 2366 8.751242 ACCTAGTTCTTGGAAATTAGTCTCTAC 58.249 37.037 7.24 0.00 0.00 2.59
1150 2367 8.973182 CCTAGTTCTTGGAAATTAGTCTCTACT 58.027 37.037 0.00 0.00 39.91 2.57
1152 2369 7.842982 AGTTCTTGGAAATTAGTCTCTACTCC 58.157 38.462 0.00 0.00 37.15 3.85
1153 2370 6.793505 TCTTGGAAATTAGTCTCTACTCCC 57.206 41.667 0.00 0.00 37.15 4.30
1154 2371 6.503944 TCTTGGAAATTAGTCTCTACTCCCT 58.496 40.000 0.00 0.00 37.15 4.20
1155 2372 6.608002 TCTTGGAAATTAGTCTCTACTCCCTC 59.392 42.308 0.00 0.00 37.15 4.30
1156 2373 5.209659 TGGAAATTAGTCTCTACTCCCTCC 58.790 45.833 0.00 0.00 37.15 4.30
1157 2374 5.209659 GGAAATTAGTCTCTACTCCCTCCA 58.790 45.833 0.00 0.00 37.15 3.86
1158 2375 5.841783 GGAAATTAGTCTCTACTCCCTCCAT 59.158 44.000 0.00 0.00 37.15 3.41
1159 2376 7.011382 GGAAATTAGTCTCTACTCCCTCCATA 58.989 42.308 0.00 0.00 37.15 2.74
1160 2377 7.509659 GGAAATTAGTCTCTACTCCCTCCATAA 59.490 40.741 0.00 0.00 37.15 1.90
1161 2378 8.855804 AAATTAGTCTCTACTCCCTCCATAAA 57.144 34.615 0.00 0.00 37.15 1.40
1162 2379 7.842887 ATTAGTCTCTACTCCCTCCATAAAC 57.157 40.000 0.00 0.00 37.15 2.01
1163 2380 5.475398 AGTCTCTACTCCCTCCATAAACT 57.525 43.478 0.00 0.00 0.00 2.66
1164 2381 6.593759 AGTCTCTACTCCCTCCATAAACTA 57.406 41.667 0.00 0.00 0.00 2.24
1166 2383 7.597327 AGTCTCTACTCCCTCCATAAACTAAT 58.403 38.462 0.00 0.00 0.00 1.73
1167 2384 8.734763 AGTCTCTACTCCCTCCATAAACTAATA 58.265 37.037 0.00 0.00 0.00 0.98
1174 2391 8.817876 ACTCCCTCCATAAACTAATATAAGAGC 58.182 37.037 0.00 0.00 0.00 4.09
1175 2392 8.147244 TCCCTCCATAAACTAATATAAGAGCC 57.853 38.462 0.00 0.00 0.00 4.70
1176 2393 7.962003 TCCCTCCATAAACTAATATAAGAGCCT 59.038 37.037 0.00 0.00 0.00 4.58
1177 2394 9.268282 CCCTCCATAAACTAATATAAGAGCCTA 57.732 37.037 0.00 0.00 0.00 3.93
1195 2412 7.120051 AGAGCCTAGTGATCTAAACACTCTTA 58.880 38.462 0.00 0.00 45.58 2.10
1197 2414 8.998277 AGCCTAGTGATCTAAACACTCTTATA 57.002 34.615 0.00 0.00 45.58 0.98
1241 2638 1.688884 AGAAGAGAGCAGGGGAGCC 60.689 63.158 0.00 0.00 34.23 4.70
1251 2648 2.671682 GGGGAGCCCACTGAAGAC 59.328 66.667 8.02 0.00 44.65 3.01
1254 2651 0.035915 GGGAGCCCACTGAAGACTTC 60.036 60.000 8.34 8.34 35.81 3.01
1255 2652 0.390472 GGAGCCCACTGAAGACTTCG 60.390 60.000 10.56 7.88 0.00 3.79
1256 2653 0.390472 GAGCCCACTGAAGACTTCGG 60.390 60.000 20.39 20.39 41.86 4.30
1258 2655 1.371183 CCCACTGAAGACTTCGGCA 59.629 57.895 21.65 0.00 39.72 5.69
1259 2656 0.951040 CCCACTGAAGACTTCGGCAC 60.951 60.000 21.65 0.00 39.72 5.01
1260 2657 0.249868 CCACTGAAGACTTCGGCACA 60.250 55.000 21.65 0.00 39.72 4.57
1261 2658 0.861837 CACTGAAGACTTCGGCACAC 59.138 55.000 21.65 0.00 39.72 3.82
1263 2660 1.139058 ACTGAAGACTTCGGCACACTT 59.861 47.619 21.65 0.76 39.72 3.16
1265 2662 3.006967 ACTGAAGACTTCGGCACACTTAT 59.993 43.478 21.65 0.00 39.72 1.73
1266 2663 3.585862 TGAAGACTTCGGCACACTTATC 58.414 45.455 10.56 0.00 0.00 1.75
1267 2664 3.258372 TGAAGACTTCGGCACACTTATCT 59.742 43.478 10.56 0.00 0.00 1.98
1268 2665 3.512033 AGACTTCGGCACACTTATCTC 57.488 47.619 0.00 0.00 0.00 2.75
1269 2666 2.166664 AGACTTCGGCACACTTATCTCC 59.833 50.000 0.00 0.00 0.00 3.71
1270 2667 1.135083 ACTTCGGCACACTTATCTCCG 60.135 52.381 0.00 0.00 41.30 4.63
1271 2668 0.459585 TTCGGCACACTTATCTCCGC 60.460 55.000 0.00 0.00 39.90 5.54
1274 2695 1.291132 GGCACACTTATCTCCGCTTC 58.709 55.000 0.00 0.00 0.00 3.86
1280 2701 4.098044 CACACTTATCTCCGCTTCCTTCTA 59.902 45.833 0.00 0.00 0.00 2.10
1305 2726 1.674322 CCAACGGCAGTAACCCCTG 60.674 63.158 0.00 0.00 35.49 4.45
1306 2727 1.072505 CAACGGCAGTAACCCCTGT 59.927 57.895 0.00 0.00 34.84 4.00
1307 2728 0.536460 CAACGGCAGTAACCCCTGTT 60.536 55.000 0.00 0.00 38.52 3.16
1308 2729 0.250597 AACGGCAGTAACCCCTGTTC 60.251 55.000 0.00 0.00 35.87 3.18
1309 2730 1.125711 ACGGCAGTAACCCCTGTTCT 61.126 55.000 0.00 0.00 35.87 3.01
1310 2731 0.391263 CGGCAGTAACCCCTGTTCTC 60.391 60.000 0.00 0.00 35.87 2.87
1313 2734 0.618981 CAGTAACCCCTGTTCTCCCC 59.381 60.000 0.00 0.00 35.87 4.81
1315 2736 0.327259 GTAACCCCTGTTCTCCCCAC 59.673 60.000 0.00 0.00 35.87 4.61
1320 2741 1.455849 CCTGTTCTCCCCACAGCAA 59.544 57.895 0.00 0.00 40.43 3.91
1330 2751 2.192861 CCACAGCAACCTTGGCGAA 61.193 57.895 0.00 0.00 36.08 4.70
1393 2836 1.691195 TTTGGGTGTCGCTCAGGTGA 61.691 55.000 0.00 0.00 0.00 4.02
1431 2874 8.896744 CATTCTTGATTCTTGGCTGTATTTCTA 58.103 33.333 0.00 0.00 0.00 2.10
1465 2911 3.578282 TGTTCCTCTGTCAGTGCTGAATA 59.422 43.478 3.19 0.00 41.85 1.75
1492 2938 1.398390 CCCTTCTTTCGTATGCTGCAC 59.602 52.381 3.57 0.00 0.00 4.57
1493 2939 2.076100 CCTTCTTTCGTATGCTGCACA 58.924 47.619 3.57 0.00 0.00 4.57
1622 3071 2.747686 GTGACCCGGATGTGTGGT 59.252 61.111 0.73 0.00 34.33 4.16
1626 3075 1.535444 ACCCGGATGTGTGGTCTCA 60.535 57.895 0.73 0.00 0.00 3.27
1667 3116 2.202932 CGCCATCTGCTAGCCGTT 60.203 61.111 13.29 0.00 38.05 4.44
1715 3164 0.110104 GGAGCCAGAGCAATGCCTAT 59.890 55.000 0.00 0.00 43.56 2.57
1775 3224 3.873883 GCCGACGACGTCCTCGAT 61.874 66.667 30.11 4.79 46.14 3.59
1832 3281 2.747686 GGCAAGTCCACTTCCCGA 59.252 61.111 0.00 0.00 33.11 5.14
1841 3290 7.711828 CAAGTCCACTTCCCGAAAGGTACTT 62.712 48.000 0.00 5.87 42.57 2.24
1853 3302 1.624336 AGGTACTTGGCTACGTCACA 58.376 50.000 0.00 0.00 27.25 3.58
1959 3408 1.962807 TGAACATGTTTGGCCTTGAGG 59.037 47.619 13.36 0.00 38.53 3.86
1985 3434 3.854669 AATCGGGAGGAGCGGCAG 61.855 66.667 1.45 0.00 0.00 4.85
2022 3471 2.104111 ACACACTCCAAATTGGACGAGA 59.896 45.455 11.23 0.00 42.67 4.04
2193 3642 3.599343 CGAGAGGTCCAACATCATTTCA 58.401 45.455 0.00 0.00 30.12 2.69
2295 3744 5.255710 TGATTTGCCAGAAAACGAAAAGA 57.744 34.783 0.00 0.00 0.00 2.52
2372 3839 5.972107 AGAAACTTGATGAAGTCATTGGG 57.028 39.130 0.00 0.00 41.87 4.12
2373 3840 4.768968 AGAAACTTGATGAAGTCATTGGGG 59.231 41.667 0.00 0.00 41.87 4.96
2421 3891 8.615211 TCGATGATGTATGGAATGAAGAAAAAG 58.385 33.333 0.00 0.00 0.00 2.27
2580 4050 5.126707 AGTGAAGAAGATTCATGGGAATTGC 59.873 40.000 0.00 0.00 43.69 3.56
2627 4097 2.634940 TGTAGAGGAGCAAGCAGAGTTT 59.365 45.455 0.00 0.00 0.00 2.66
2632 4102 2.157738 GGAGCAAGCAGAGTTTGTCAT 58.842 47.619 0.00 0.00 0.00 3.06
2697 4167 2.704572 CTCTGAAGACAATGGGTGGAC 58.295 52.381 0.00 0.00 0.00 4.02
2720 4190 3.193267 TGCTGAGTTCAAAGCAACAAGTT 59.807 39.130 0.00 0.00 46.06 2.66
2778 4248 4.892934 GGGATAATGTTGGAGGCAAACATA 59.107 41.667 11.88 4.18 45.25 2.29
2780 4250 6.127196 GGGATAATGTTGGAGGCAAACATAAA 60.127 38.462 11.88 6.11 45.25 1.40
3095 4574 0.401356 TGCATGACTTGGCCAGAGAA 59.599 50.000 18.22 8.84 0.00 2.87
3111 4590 5.337009 GCCAGAGAAATCACCAATGAATGTT 60.337 40.000 0.00 0.00 38.69 2.71
3144 4623 7.719483 AGAAGAATTGATTGAACAGAAAGCAA 58.281 30.769 0.00 0.00 37.33 3.91
3149 4628 4.873817 TGATTGAACAGAAAGCAATGGTG 58.126 39.130 0.00 0.00 32.80 4.17
3151 4630 4.572985 TTGAACAGAAAGCAATGGTGAG 57.427 40.909 0.00 0.00 0.00 3.51
3219 4704 4.794248 TGTGAGTTGTTCGATGACAAAG 57.206 40.909 4.30 0.00 40.86 2.77
3220 4705 4.188462 TGTGAGTTGTTCGATGACAAAGT 58.812 39.130 4.30 0.00 40.86 2.66
3299 13193 6.521162 ACCACATGTATCATTACGAGCATTA 58.479 36.000 0.00 0.00 0.00 1.90
3306 13200 4.729227 TCATTACGAGCATTACAGTGGA 57.271 40.909 0.00 0.00 0.00 4.02
3548 14619 1.204786 TGGAGGGGATGCCTCGAAAA 61.205 55.000 2.19 0.00 35.35 2.29
3587 14658 5.751243 ACCTTCACACACTAACAACATTC 57.249 39.130 0.00 0.00 0.00 2.67
3729 14801 5.626116 GCCAATCTCCATCAGAAGCAAAATT 60.626 40.000 0.00 0.00 33.62 1.82
3866 14947 7.401060 TTTGGAGTTATATGGATATGGTGGT 57.599 36.000 0.00 0.00 0.00 4.16
3925 15006 7.151999 TGTTTCAGTGCTTAAGAAAACTCAA 57.848 32.000 6.67 0.00 33.54 3.02
3926 15007 7.250569 TGTTTCAGTGCTTAAGAAAACTCAAG 58.749 34.615 6.67 0.00 33.54 3.02
3931 15012 9.337396 TCAGTGCTTAAGAAAACTCAAGATTTA 57.663 29.630 6.67 0.00 0.00 1.40
4020 15101 3.007635 GTCGGAATGGGTAAACTGAAGG 58.992 50.000 0.00 0.00 0.00 3.46
4043 15124 5.693104 GGCATTATGTGATAACCTTTGCATG 59.307 40.000 0.00 0.00 31.81 4.06
4085 15166 8.747538 ATACCTCTGTACATATTTTCCCAAAC 57.252 34.615 0.00 0.00 0.00 2.93
4099 15180 3.157087 TCCCAAACTTGAAGAAGATGGC 58.843 45.455 0.00 0.00 37.89 4.40
4126 15207 4.939439 GGTAGAGCTACATAGTCTAGAGGC 59.061 50.000 9.62 0.00 37.78 4.70
4138 15219 1.762957 TCTAGAGGCATGGGCAGTAAC 59.237 52.381 0.00 0.00 43.71 2.50
4142 15223 1.207488 AGGCATGGGCAGTAACCAGA 61.207 55.000 0.00 0.00 42.15 3.86
4178 15259 9.154632 TCTATTGATAGCTTAGTAACATTCCCA 57.845 33.333 0.00 0.00 0.00 4.37
4255 15339 1.608283 CCCCGTTCTCAAAGACCTGAC 60.608 57.143 0.00 0.00 0.00 3.51
4256 15340 1.344763 CCCGTTCTCAAAGACCTGACT 59.655 52.381 0.00 0.00 0.00 3.41
4267 15351 5.783360 TCAAAGACCTGACTATTAGTGGGAA 59.217 40.000 15.33 0.00 0.00 3.97
4269 15353 4.290942 AGACCTGACTATTAGTGGGAAGG 58.709 47.826 15.33 11.95 0.00 3.46
4271 15355 4.436079 ACCTGACTATTAGTGGGAAGGTT 58.564 43.478 15.33 2.43 0.00 3.50
4272 15356 4.850386 ACCTGACTATTAGTGGGAAGGTTT 59.150 41.667 15.33 0.00 0.00 3.27
4274 15358 5.045869 CCTGACTATTAGTGGGAAGGTTTCA 60.046 44.000 0.00 0.00 0.00 2.69
4277 15361 5.755849 ACTATTAGTGGGAAGGTTTCATGG 58.244 41.667 0.00 0.00 0.00 3.66
4279 15363 2.586648 AGTGGGAAGGTTTCATGGTC 57.413 50.000 0.00 0.00 0.00 4.02
4280 15364 2.065799 AGTGGGAAGGTTTCATGGTCT 58.934 47.619 0.00 0.00 0.00 3.85
4281 15365 2.162681 GTGGGAAGGTTTCATGGTCTG 58.837 52.381 0.00 0.00 0.00 3.51
4284 15390 2.305927 GGGAAGGTTTCATGGTCTGAGA 59.694 50.000 0.00 0.00 34.68 3.27
4302 15408 3.715015 AGGAGACCCTTCCGCTTC 58.285 61.111 0.00 0.00 40.78 3.86
4312 15420 1.804748 CCTTCCGCTTCAGTGTTTACC 59.195 52.381 0.00 0.00 0.00 2.85
4313 15421 2.550208 CCTTCCGCTTCAGTGTTTACCT 60.550 50.000 0.00 0.00 0.00 3.08
4316 15424 2.103432 TCCGCTTCAGTGTTTACCTGAA 59.897 45.455 10.98 10.98 35.99 3.02
4339 15465 5.665916 ATTTTGCCTACATCCCTTGAAAG 57.334 39.130 0.00 0.00 0.00 2.62
4346 15472 1.000274 ACATCCCTTGAAAGTTTGCGC 60.000 47.619 0.00 0.00 0.00 6.09
4351 15477 2.472816 CCTTGAAAGTTTGCGCATTGT 58.527 42.857 12.75 0.00 0.00 2.71
4363 15489 1.971167 GCATTGTGGGCTTCCGACA 60.971 57.895 0.00 0.00 0.00 4.35
4381 15507 2.625823 ATTTGGTGGCGCCGTCTTG 61.626 57.895 23.90 0.00 41.21 3.02
4382 15508 4.555709 TTGGTGGCGCCGTCTTGT 62.556 61.111 23.90 0.00 41.21 3.16
4397 15523 4.401519 CCGTCTTGTAACCTTGGAGATCTA 59.598 45.833 0.00 0.00 0.00 1.98
4410 15536 2.482864 GAGATCTAGCAAAGCTGAGGC 58.517 52.381 0.00 0.00 40.10 4.70
4412 15538 2.438763 AGATCTAGCAAAGCTGAGGCAT 59.561 45.455 0.00 0.00 40.10 4.40
4416 15542 3.645212 TCTAGCAAAGCTGAGGCATCTAT 59.355 43.478 0.00 0.00 40.10 1.98
4525 15651 0.601311 GCGATGGAGGAATTCCCGAG 60.601 60.000 21.22 8.05 46.19 4.63
4558 15684 1.531602 GGTTGCCAGCCCTTGAAGT 60.532 57.895 0.00 0.00 0.00 3.01
4573 15699 4.202264 CCTTGAAGTCCTAAGCATATCGGT 60.202 45.833 0.00 0.00 0.00 4.69
4640 15766 1.227263 CCACTTGGTCGCTATCCCG 60.227 63.158 0.00 0.00 0.00 5.14
4658 15784 7.707035 GCTATCCCGTATAAATACATTCCAGAG 59.293 40.741 1.37 0.00 32.87 3.35
4674 15821 2.421619 CAGAGGAACCAGAAGCAGAAC 58.578 52.381 0.00 0.00 0.00 3.01
4763 15922 3.477530 TCACTCGAAGTCTGACTCTGAA 58.522 45.455 11.31 0.00 0.00 3.02
4939 16193 3.287867 CCAGAAGTATGGTTCCAGCAT 57.712 47.619 0.00 0.00 39.88 3.79
5130 16576 6.540438 AATTTCATCCTGAATTGTGCTCAT 57.460 33.333 0.00 0.00 36.11 2.90
5132 16578 6.441093 TTTCATCCTGAATTGTGCTCATAC 57.559 37.500 0.00 0.00 36.11 2.39
5139 16585 5.450965 CCTGAATTGTGCTCATACCAATTCC 60.451 44.000 17.05 5.09 39.90 3.01
5159 16605 3.000041 CCGCACAATACTTGAACTAGCA 59.000 45.455 0.00 0.00 0.00 3.49
5162 16610 5.082059 CGCACAATACTTGAACTAGCAAAG 58.918 41.667 0.00 0.00 0.00 2.77
5192 16661 8.201554 TGTTCTGCATCATAAATCAGTACTTC 57.798 34.615 0.00 0.00 31.15 3.01
5220 16689 6.384224 TGAGATGATGACAAAATGCTTTCAC 58.616 36.000 0.00 0.00 0.00 3.18
5221 16690 5.717119 AGATGATGACAAAATGCTTTCACC 58.283 37.500 0.00 0.00 0.00 4.02
5222 16691 4.933505 TGATGACAAAATGCTTTCACCA 57.066 36.364 0.00 0.00 0.00 4.17
5223 16692 5.471556 TGATGACAAAATGCTTTCACCAT 57.528 34.783 0.00 0.00 0.00 3.55
5224 16693 5.472148 TGATGACAAAATGCTTTCACCATC 58.528 37.500 0.00 0.00 0.00 3.51
5225 16694 5.244402 TGATGACAAAATGCTTTCACCATCT 59.756 36.000 0.00 0.00 30.57 2.90
5226 16695 5.534207 TGACAAAATGCTTTCACCATCTT 57.466 34.783 0.00 0.00 0.00 2.40
5227 16696 5.291178 TGACAAAATGCTTTCACCATCTTG 58.709 37.500 0.00 0.00 0.00 3.02
5228 16697 5.068855 TGACAAAATGCTTTCACCATCTTGA 59.931 36.000 0.00 0.00 0.00 3.02
5229 16698 6.105397 ACAAAATGCTTTCACCATCTTGAT 57.895 33.333 0.00 0.00 0.00 2.57
5230 16699 7.039853 TGACAAAATGCTTTCACCATCTTGATA 60.040 33.333 0.00 0.00 0.00 2.15
5231 16700 7.669427 ACAAAATGCTTTCACCATCTTGATAA 58.331 30.769 0.00 0.00 0.00 1.75
5254 16754 3.192422 CCATCACGGAAATTGGTTAGCAA 59.808 43.478 0.00 0.00 36.56 3.91
5292 16793 3.057245 CGTGTCTCTCAGGAATCAAGTGA 60.057 47.826 0.00 0.00 34.28 3.41
5326 16827 0.584396 CTGCAACGCCGTTTAGTTCA 59.416 50.000 0.00 0.00 0.00 3.18
5328 16829 1.604755 TGCAACGCCGTTTAGTTCATT 59.395 42.857 0.00 0.00 0.00 2.57
5375 16892 7.801104 TGCTTACTAATTGATGGATACCTTCA 58.199 34.615 0.00 0.00 36.18 3.02
5414 16938 9.520204 AAATTATCTTGCTTTGGATTATTGTCG 57.480 29.630 0.00 0.00 0.00 4.35
5416 16940 3.694072 TCTTGCTTTGGATTATTGTCGGG 59.306 43.478 0.00 0.00 0.00 5.14
5431 16955 2.693591 TGTCGGGATTCAGATACCACTC 59.306 50.000 0.00 0.00 35.83 3.51
5432 16956 1.954382 TCGGGATTCAGATACCACTCG 59.046 52.381 0.00 0.00 35.83 4.18
5443 16967 2.821366 CCACTCGGTGATGGCAGC 60.821 66.667 0.00 0.00 35.23 5.25
5453 16980 0.889994 TGATGGCAGCGCAAGAAAAT 59.110 45.000 11.47 0.00 43.02 1.82
5496 17023 5.047847 CGTATGAATGTGTACCCTGGTAAG 58.952 45.833 0.00 0.00 31.86 2.34
5502 17029 1.475682 GTGTACCCTGGTAAGTCTCCG 59.524 57.143 0.00 0.00 31.86 4.63
5508 17041 2.165845 CCCTGGTAAGTCTCCGTACAAG 59.834 54.545 0.00 0.00 0.00 3.16
5512 17045 2.991866 GGTAAGTCTCCGTACAAGTTGC 59.008 50.000 1.81 0.00 0.00 4.17
5531 17064 1.797046 GCGTGGATGATATGCTGACAG 59.203 52.381 0.00 0.00 0.00 3.51
5551 17085 7.334858 TGACAGTATTCAGGTATAATGCAACA 58.665 34.615 0.00 0.00 31.17 3.33
5558 17092 6.618287 TCAGGTATAATGCAACACTAATGC 57.382 37.500 0.00 0.00 44.08 3.56
5716 17283 4.033009 TGGGAACTAGATCATGCTCTGAA 58.967 43.478 9.34 0.00 37.44 3.02
5717 17284 4.657504 TGGGAACTAGATCATGCTCTGAAT 59.342 41.667 9.34 0.00 37.44 2.57
5732 17299 0.672401 TGAATGTCGTCGCTTTCCCC 60.672 55.000 10.48 0.00 0.00 4.81
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 4.796231 ATGGTCGACGGTGCGCTC 62.796 66.667 9.73 4.47 0.00 5.03
2 3 4.796231 GATGGTCGACGGTGCGCT 62.796 66.667 9.73 0.00 0.00 5.92
5 6 4.832608 GGGGATGGTCGACGGTGC 62.833 72.222 9.92 5.63 0.00 5.01
6 7 4.508128 CGGGGATGGTCGACGGTG 62.508 72.222 9.92 0.00 0.00 4.94
7 8 4.746309 TCGGGGATGGTCGACGGT 62.746 66.667 9.92 0.00 0.00 4.83
8 9 3.208884 GATCGGGGATGGTCGACGG 62.209 68.421 9.92 0.00 38.25 4.79
9 10 1.735376 AAGATCGGGGATGGTCGACG 61.735 60.000 9.92 0.00 38.25 5.12
11 12 0.686441 ACAAGATCGGGGATGGTCGA 60.686 55.000 0.00 0.00 39.79 4.20
12 13 0.249489 GACAAGATCGGGGATGGTCG 60.249 60.000 0.00 0.00 0.00 4.79
13 14 0.106894 GGACAAGATCGGGGATGGTC 59.893 60.000 0.00 0.00 0.00 4.02
14 15 1.345715 GGGACAAGATCGGGGATGGT 61.346 60.000 0.00 0.00 0.00 3.55
15 16 1.056700 AGGGACAAGATCGGGGATGG 61.057 60.000 0.00 0.00 0.00 3.51
16 17 0.839946 AAGGGACAAGATCGGGGATG 59.160 55.000 0.00 0.00 0.00 3.51
61 62 4.675510 CATTTTGGACCACTGTATGCATC 58.324 43.478 0.19 0.00 0.00 3.91
65 66 3.507233 ACTGCATTTTGGACCACTGTATG 59.493 43.478 0.00 0.00 0.00 2.39
69 70 2.746269 CAACTGCATTTTGGACCACTG 58.254 47.619 0.00 0.00 0.00 3.66
74 75 2.514205 ACAGCAACTGCATTTTGGAC 57.486 45.000 4.22 0.00 45.16 4.02
120 121 5.936686 ATTGTGGACATCATCAATCGATC 57.063 39.130 0.00 0.00 0.00 3.69
179 180 0.808125 TGAATTTTGGACGGCATCGG 59.192 50.000 0.00 0.00 41.39 4.18
180 181 1.468520 ACTGAATTTTGGACGGCATCG 59.531 47.619 0.00 0.00 43.02 3.84
202 203 4.134563 TCAATCGACCGATACATCAGAGA 58.865 43.478 5.27 0.00 33.97 3.10
256 257 5.815581 TCTAATCACATGTAAAAGGCCAGT 58.184 37.500 5.01 0.00 0.00 4.00
257 258 5.220931 GCTCTAATCACATGTAAAAGGCCAG 60.221 44.000 5.01 0.00 0.00 4.85
259 260 4.036852 GGCTCTAATCACATGTAAAAGGCC 59.963 45.833 0.00 0.00 0.00 5.19
261 262 5.116180 TCGGCTCTAATCACATGTAAAAGG 58.884 41.667 0.00 0.00 0.00 3.11
262 263 5.812642 ACTCGGCTCTAATCACATGTAAAAG 59.187 40.000 0.00 0.00 0.00 2.27
265 266 4.202121 GGACTCGGCTCTAATCACATGTAA 60.202 45.833 0.00 0.00 0.00 2.41
266 267 3.318275 GGACTCGGCTCTAATCACATGTA 59.682 47.826 0.00 0.00 0.00 2.29
268 269 2.748605 GGACTCGGCTCTAATCACATG 58.251 52.381 0.00 0.00 0.00 3.21
269 270 1.338337 CGGACTCGGCTCTAATCACAT 59.662 52.381 0.00 0.00 0.00 3.21
271 272 1.022735 TCGGACTCGGCTCTAATCAC 58.977 55.000 0.00 0.00 36.95 3.06
276 277 3.200593 GCGTCGGACTCGGCTCTA 61.201 66.667 6.57 0.00 39.11 2.43
282 283 4.813526 CAGGACGCGTCGGACTCG 62.814 72.222 30.99 17.94 37.82 4.18
283 284 4.477975 CCAGGACGCGTCGGACTC 62.478 72.222 30.99 17.76 0.00 3.36
289 290 4.736896 GACACCCCAGGACGCGTC 62.737 72.222 30.67 30.67 0.00 5.19
291 292 4.742201 CAGACACCCCAGGACGCG 62.742 72.222 3.53 3.53 0.00 6.01
292 293 2.660064 ATCAGACACCCCAGGACGC 61.660 63.158 0.00 0.00 0.00 5.19
293 294 1.219124 CATCAGACACCCCAGGACG 59.781 63.158 0.00 0.00 0.00 4.79
295 296 2.505407 CAATACATCAGACACCCCAGGA 59.495 50.000 0.00 0.00 0.00 3.86
297 298 2.239654 ACCAATACATCAGACACCCCAG 59.760 50.000 0.00 0.00 0.00 4.45
317 358 5.233689 GCCGGTAACTTACATGTGATTAGAC 59.766 44.000 9.11 0.00 0.00 2.59
432 783 9.119418 GCTCTTCTGCATGAGTCTATCTATATA 57.881 37.037 0.00 0.00 33.22 0.86
433 784 7.614974 TGCTCTTCTGCATGAGTCTATCTATAT 59.385 37.037 0.00 0.00 38.12 0.86
453 804 6.656902 TGATCAAAATCCTCTGTATGCTCTT 58.343 36.000 0.00 0.00 0.00 2.85
584 1700 6.633500 TTTTCTTCATCTGATCAAACGGTT 57.367 33.333 0.00 0.00 0.00 4.44
585 1701 6.633500 TTTTTCTTCATCTGATCAAACGGT 57.367 33.333 0.00 0.00 0.00 4.83
687 1804 1.539827 GCGTGCAATAGGTCCTGTTTT 59.460 47.619 0.00 0.00 0.00 2.43
765 1883 3.121544 GAGAAGTAAATAACGGGAGGCG 58.878 50.000 0.00 0.00 0.00 5.52
782 1934 5.559770 TGAATGCTGGTGTTTAGATGAGAA 58.440 37.500 0.00 0.00 0.00 2.87
783 1935 5.164620 TGAATGCTGGTGTTTAGATGAGA 57.835 39.130 0.00 0.00 0.00 3.27
784 1936 5.817988 CATGAATGCTGGTGTTTAGATGAG 58.182 41.667 0.00 0.00 0.00 2.90
785 1937 5.823209 CATGAATGCTGGTGTTTAGATGA 57.177 39.130 0.00 0.00 0.00 2.92
800 1952 1.987770 GTGGACGCAAAAGCATGAATG 59.012 47.619 0.00 0.00 0.00 2.67
801 1953 1.612950 TGTGGACGCAAAAGCATGAAT 59.387 42.857 0.00 0.00 0.00 2.57
802 1954 1.028130 TGTGGACGCAAAAGCATGAA 58.972 45.000 0.00 0.00 0.00 2.57
803 1955 1.246649 ATGTGGACGCAAAAGCATGA 58.753 45.000 0.00 0.00 0.00 3.07
804 1956 2.068837 AATGTGGACGCAAAAGCATG 57.931 45.000 0.00 0.00 0.00 4.06
805 1957 2.818130 AAATGTGGACGCAAAAGCAT 57.182 40.000 0.00 0.00 0.00 3.79
806 1958 2.287909 GGTAAATGTGGACGCAAAAGCA 60.288 45.455 0.00 0.00 0.00 3.91
807 1959 2.287909 TGGTAAATGTGGACGCAAAAGC 60.288 45.455 0.00 0.00 0.00 3.51
808 1960 3.564511 CTGGTAAATGTGGACGCAAAAG 58.435 45.455 0.00 0.00 0.00 2.27
809 1961 2.294791 CCTGGTAAATGTGGACGCAAAA 59.705 45.455 0.00 0.00 0.00 2.44
810 1962 1.883275 CCTGGTAAATGTGGACGCAAA 59.117 47.619 0.00 0.00 0.00 3.68
811 1963 1.529226 CCTGGTAAATGTGGACGCAA 58.471 50.000 0.00 0.00 0.00 4.85
812 1964 0.958382 GCCTGGTAAATGTGGACGCA 60.958 55.000 0.00 0.00 0.00 5.24
813 1965 0.958382 TGCCTGGTAAATGTGGACGC 60.958 55.000 0.00 0.00 0.00 5.19
814 1966 1.670811 GATGCCTGGTAAATGTGGACG 59.329 52.381 0.00 0.00 0.00 4.79
815 1967 3.004752 AGATGCCTGGTAAATGTGGAC 57.995 47.619 0.00 0.00 0.00 4.02
816 1968 3.620488 GAAGATGCCTGGTAAATGTGGA 58.380 45.455 0.00 0.00 0.00 4.02
817 1969 2.355756 CGAAGATGCCTGGTAAATGTGG 59.644 50.000 0.00 0.00 0.00 4.17
818 1970 2.223340 GCGAAGATGCCTGGTAAATGTG 60.223 50.000 0.00 0.00 0.00 3.21
819 1971 2.017049 GCGAAGATGCCTGGTAAATGT 58.983 47.619 0.00 0.00 0.00 2.71
820 1972 1.003545 CGCGAAGATGCCTGGTAAATG 60.004 52.381 0.00 0.00 0.00 2.32
821 1973 1.299541 CGCGAAGATGCCTGGTAAAT 58.700 50.000 0.00 0.00 0.00 1.40
822 1974 0.742990 CCGCGAAGATGCCTGGTAAA 60.743 55.000 8.23 0.00 0.00 2.01
823 1975 1.153449 CCGCGAAGATGCCTGGTAA 60.153 57.895 8.23 0.00 0.00 2.85
824 1976 2.355986 ACCGCGAAGATGCCTGGTA 61.356 57.895 8.23 0.00 28.43 3.25
825 1977 3.706373 ACCGCGAAGATGCCTGGT 61.706 61.111 8.23 0.00 0.00 4.00
826 1978 3.197790 CACCGCGAAGATGCCTGG 61.198 66.667 8.23 0.00 0.00 4.45
862 2014 3.201290 CACATGGCTGGTAGATGAGAAC 58.799 50.000 0.00 0.00 0.00 3.01
914 2066 2.912986 CACCACTTTCGCTGTGCTA 58.087 52.632 0.00 0.00 34.38 3.49
922 2074 0.318441 TCTCTCCAGCACCACTTTCG 59.682 55.000 0.00 0.00 0.00 3.46
925 2077 0.972883 GTCTCTCTCCAGCACCACTT 59.027 55.000 0.00 0.00 0.00 3.16
1001 2163 1.003118 CTCCACCATCCCGACTTTTCA 59.997 52.381 0.00 0.00 0.00 2.69
1010 2172 1.396653 CATCTTTGCTCCACCATCCC 58.603 55.000 0.00 0.00 0.00 3.85
1035 2197 0.321653 CCTGACAACACCTACCAGGC 60.322 60.000 0.00 0.00 39.63 4.85
1131 2348 6.183360 GGAGGGAGTAGAGACTAATTTCCAAG 60.183 46.154 0.00 0.00 35.45 3.61
1132 2349 5.661759 GGAGGGAGTAGAGACTAATTTCCAA 59.338 44.000 0.00 0.00 35.45 3.53
1148 2365 8.817876 GCTCTTATATTAGTTTATGGAGGGAGT 58.182 37.037 0.00 0.00 0.00 3.85
1149 2366 8.261522 GGCTCTTATATTAGTTTATGGAGGGAG 58.738 40.741 0.00 0.00 0.00 4.30
1150 2367 7.962003 AGGCTCTTATATTAGTTTATGGAGGGA 59.038 37.037 0.00 0.00 0.00 4.20
1151 2368 8.152023 AGGCTCTTATATTAGTTTATGGAGGG 57.848 38.462 0.00 0.00 0.00 4.30
1166 2383 8.998277 AGTGTTTAGATCACTAGGCTCTTATA 57.002 34.615 0.00 0.00 43.17 0.98
1167 2384 7.782644 AGAGTGTTTAGATCACTAGGCTCTTAT 59.217 37.037 0.00 0.00 44.68 1.73
1169 2386 5.955355 AGAGTGTTTAGATCACTAGGCTCTT 59.045 40.000 0.00 0.00 44.68 2.85
1170 2387 5.515106 AGAGTGTTTAGATCACTAGGCTCT 58.485 41.667 0.00 0.00 44.68 4.09
1171 2388 5.845391 AGAGTGTTTAGATCACTAGGCTC 57.155 43.478 0.00 0.00 44.68 4.70
1172 2389 7.906199 ATAAGAGTGTTTAGATCACTAGGCT 57.094 36.000 0.00 0.00 44.68 4.58
1202 2419 9.488762 TCTTCTGAATAATACTCCCTCTGTAAA 57.511 33.333 0.00 0.00 0.00 2.01
1203 2420 9.137459 CTCTTCTGAATAATACTCCCTCTGTAA 57.863 37.037 0.00 0.00 0.00 2.41
1204 2421 8.503573 TCTCTTCTGAATAATACTCCCTCTGTA 58.496 37.037 0.00 0.00 0.00 2.74
1206 2423 7.523709 GCTCTCTTCTGAATAATACTCCCTCTG 60.524 44.444 0.00 0.00 0.00 3.35
1207 2424 6.493458 GCTCTCTTCTGAATAATACTCCCTCT 59.507 42.308 0.00 0.00 0.00 3.69
1208 2425 6.266558 TGCTCTCTTCTGAATAATACTCCCTC 59.733 42.308 0.00 0.00 0.00 4.30
1209 2426 6.139671 TGCTCTCTTCTGAATAATACTCCCT 58.860 40.000 0.00 0.00 0.00 4.20
1210 2427 6.412362 TGCTCTCTTCTGAATAATACTCCC 57.588 41.667 0.00 0.00 0.00 4.30
1211 2428 6.454795 CCTGCTCTCTTCTGAATAATACTCC 58.545 44.000 0.00 0.00 0.00 3.85
1212 2429 6.454795 CCCTGCTCTCTTCTGAATAATACTC 58.545 44.000 0.00 0.00 0.00 2.59
1213 2430 5.306678 CCCCTGCTCTCTTCTGAATAATACT 59.693 44.000 0.00 0.00 0.00 2.12
1214 2431 5.305644 TCCCCTGCTCTCTTCTGAATAATAC 59.694 44.000 0.00 0.00 0.00 1.89
1215 2432 5.467738 TCCCCTGCTCTCTTCTGAATAATA 58.532 41.667 0.00 0.00 0.00 0.98
1216 2433 4.302067 TCCCCTGCTCTCTTCTGAATAAT 58.698 43.478 0.00 0.00 0.00 1.28
1217 2434 3.708631 CTCCCCTGCTCTCTTCTGAATAA 59.291 47.826 0.00 0.00 0.00 1.40
1218 2435 3.303938 CTCCCCTGCTCTCTTCTGAATA 58.696 50.000 0.00 0.00 0.00 1.75
1219 2436 2.117865 CTCCCCTGCTCTCTTCTGAAT 58.882 52.381 0.00 0.00 0.00 2.57
1220 2437 1.566211 CTCCCCTGCTCTCTTCTGAA 58.434 55.000 0.00 0.00 0.00 3.02
1221 2438 0.975040 GCTCCCCTGCTCTCTTCTGA 60.975 60.000 0.00 0.00 0.00 3.27
1241 2638 0.249868 TGTGCCGAAGTCTTCAGTGG 60.250 55.000 12.99 6.97 0.00 4.00
1243 2640 0.753262 AGTGTGCCGAAGTCTTCAGT 59.247 50.000 12.99 0.00 0.00 3.41
1251 2648 1.560923 CGGAGATAAGTGTGCCGAAG 58.439 55.000 0.00 0.00 44.43 3.79
1254 2651 0.460284 AAGCGGAGATAAGTGTGCCG 60.460 55.000 0.00 0.00 44.47 5.69
1255 2652 1.291132 GAAGCGGAGATAAGTGTGCC 58.709 55.000 0.00 0.00 0.00 5.01
1256 2653 1.134670 AGGAAGCGGAGATAAGTGTGC 60.135 52.381 0.00 0.00 0.00 4.57
1258 2655 3.100671 AGAAGGAAGCGGAGATAAGTGT 58.899 45.455 0.00 0.00 0.00 3.55
1259 2656 3.810310 AGAAGGAAGCGGAGATAAGTG 57.190 47.619 0.00 0.00 0.00 3.16
1260 2657 6.463190 GGAAATAGAAGGAAGCGGAGATAAGT 60.463 42.308 0.00 0.00 0.00 2.24
1261 2658 5.929415 GGAAATAGAAGGAAGCGGAGATAAG 59.071 44.000 0.00 0.00 0.00 1.73
1263 2660 4.899457 TGGAAATAGAAGGAAGCGGAGATA 59.101 41.667 0.00 0.00 0.00 1.98
1265 2662 3.104512 TGGAAATAGAAGGAAGCGGAGA 58.895 45.455 0.00 0.00 0.00 3.71
1266 2663 3.198872 GTGGAAATAGAAGGAAGCGGAG 58.801 50.000 0.00 0.00 0.00 4.63
1267 2664 2.093128 GGTGGAAATAGAAGGAAGCGGA 60.093 50.000 0.00 0.00 0.00 5.54
1268 2665 2.289565 GGTGGAAATAGAAGGAAGCGG 58.710 52.381 0.00 0.00 0.00 5.52
1269 2666 2.985896 TGGTGGAAATAGAAGGAAGCG 58.014 47.619 0.00 0.00 0.00 4.68
1270 2667 3.127030 CGTTGGTGGAAATAGAAGGAAGC 59.873 47.826 0.00 0.00 0.00 3.86
1271 2668 3.689649 CCGTTGGTGGAAATAGAAGGAAG 59.310 47.826 0.00 0.00 0.00 3.46
1274 2695 1.743394 GCCGTTGGTGGAAATAGAAGG 59.257 52.381 0.00 0.00 0.00 3.46
1280 2701 1.883926 GTTACTGCCGTTGGTGGAAAT 59.116 47.619 0.00 0.00 0.00 2.17
1305 2726 0.178990 AAGGTTGCTGTGGGGAGAAC 60.179 55.000 0.00 0.00 0.00 3.01
1306 2727 0.178992 CAAGGTTGCTGTGGGGAGAA 60.179 55.000 0.00 0.00 0.00 2.87
1307 2728 1.455849 CAAGGTTGCTGTGGGGAGA 59.544 57.895 0.00 0.00 0.00 3.71
1308 2729 1.604593 CCAAGGTTGCTGTGGGGAG 60.605 63.158 0.00 0.00 0.00 4.30
1309 2730 2.520458 CCAAGGTTGCTGTGGGGA 59.480 61.111 0.00 0.00 0.00 4.81
1310 2731 3.305516 GCCAAGGTTGCTGTGGGG 61.306 66.667 0.00 0.00 32.71 4.96
1313 2734 0.318107 CTTTCGCCAAGGTTGCTGTG 60.318 55.000 0.00 0.00 0.00 3.66
1315 2736 0.239347 CTCTTTCGCCAAGGTTGCTG 59.761 55.000 0.00 0.00 32.64 4.41
1320 2741 1.003233 GGAGCTCTTTCGCCAAGGT 60.003 57.895 14.64 0.00 32.64 3.50
1351 2794 1.151668 GATCAGATCCAATTCGCCGG 58.848 55.000 0.00 0.00 0.00 6.13
1357 2800 5.068198 CACCCAAAATCGATCAGATCCAATT 59.932 40.000 0.00 2.81 38.98 2.32
1358 2801 4.581824 CACCCAAAATCGATCAGATCCAAT 59.418 41.667 0.00 0.00 38.98 3.16
1393 2836 4.792513 ATCAAGAATGGAGGAGAGCATT 57.207 40.909 0.00 0.00 0.00 3.56
1431 2874 3.325135 ACAGAGGAACAACCGAAGAAGAT 59.675 43.478 0.00 0.00 44.74 2.40
1465 2911 5.355350 CAGCATACGAAAGAAGGGAAGAAAT 59.645 40.000 0.00 0.00 0.00 2.17
1492 2938 2.877168 AGAAGTCAAGAAACTGCAGCTG 59.123 45.455 15.27 10.11 0.00 4.24
1493 2939 3.205784 AGAAGTCAAGAAACTGCAGCT 57.794 42.857 15.27 0.00 0.00 4.24
1622 3071 0.029700 TTTCGCAGTCGTCGTTGAGA 59.970 50.000 0.00 0.00 36.96 3.27
1626 3075 3.218173 CGTTTCGCAGTCGTCGTT 58.782 55.556 0.00 0.00 36.96 3.85
1667 3116 1.723608 CGTTGGCCAACTTGCACTCA 61.724 55.000 38.38 4.57 39.08 3.41
1695 3144 2.044650 GGCATTGCTCTGGCTCCA 60.045 61.111 8.82 0.00 38.58 3.86
1715 3164 0.633378 TCTCCATCCAGCTCCTGAGA 59.367 55.000 0.00 0.00 32.44 3.27
1810 3259 0.744771 GGAAGTGGACTTGCCGATCC 60.745 60.000 0.00 0.00 38.21 3.36
1832 3281 2.366266 TGTGACGTAGCCAAGTACCTTT 59.634 45.455 0.00 0.00 0.00 3.11
1895 3344 4.766272 TCGAGGACTCCCTTGAGG 57.234 61.111 0.00 0.00 45.84 3.86
1959 3408 2.804933 GCTCCTCCCGATTGACAGAATC 60.805 54.545 0.00 0.00 0.00 2.52
1985 3434 1.745115 TGTCTGCCGCCAAGTATGC 60.745 57.895 0.00 0.00 0.00 3.14
2022 3471 4.792068 TCTCTTCCAAACATCTTGTTGGT 58.208 39.130 2.58 0.00 40.14 3.67
2026 3475 6.373774 GTCATCATCTCTTCCAAACATCTTGT 59.626 38.462 0.00 0.00 0.00 3.16
2193 3642 2.157738 GCAGTGCCAGATCTTCAACTT 58.842 47.619 2.85 0.00 0.00 2.66
2295 3744 2.279173 ACCTCCCTTTCTAGCCAATGT 58.721 47.619 0.00 0.00 0.00 2.71
2372 3839 6.861572 CGAGAACAAGTAAAAATCTTTTCCCC 59.138 38.462 0.00 0.00 0.00 4.81
2373 3840 7.645402 TCGAGAACAAGTAAAAATCTTTTCCC 58.355 34.615 0.00 0.00 0.00 3.97
2421 3891 3.836146 TCAATTCATCATCCCACATCCC 58.164 45.455 0.00 0.00 0.00 3.85
2580 4050 5.116074 CACTGCTAAATGCTTTGTTCGAAAG 59.884 40.000 0.00 0.00 43.37 2.62
2627 4097 5.487433 ACAATACGTCTTCCAATGATGACA 58.513 37.500 0.00 0.00 42.75 3.58
2632 4102 8.554835 TTTATTGACAATACGTCTTCCAATGA 57.445 30.769 7.41 8.64 45.60 2.57
2697 4167 3.181493 ACTTGTTGCTTTGAACTCAGCAG 60.181 43.478 0.00 0.00 46.55 4.24
2778 4248 4.307032 ACTTCAGTATGGGCATGACTTT 57.693 40.909 0.00 0.00 36.16 2.66
2780 4250 5.431765 CTTAACTTCAGTATGGGCATGACT 58.568 41.667 0.00 0.00 36.16 3.41
3095 4574 4.158786 TGGTGGAACATTCATTGGTGATT 58.841 39.130 0.00 0.00 44.52 2.57
3111 4590 7.174413 TGTTCAATCAATTCTTCTATGGTGGA 58.826 34.615 0.00 0.00 0.00 4.02
3144 4623 2.699954 GTGACGGACATTTCTCACCAT 58.300 47.619 0.00 0.00 0.00 3.55
3149 4628 1.079503 GCAGGTGACGGACATTTCTC 58.920 55.000 0.00 0.00 0.00 2.87
3151 4630 1.234821 TTGCAGGTGACGGACATTTC 58.765 50.000 0.00 0.00 0.00 2.17
3219 4704 3.552294 GCTAACAAAGTGCGGAGAGATAC 59.448 47.826 0.00 0.00 0.00 2.24
3220 4705 3.447586 AGCTAACAAAGTGCGGAGAGATA 59.552 43.478 0.00 0.00 0.00 1.98
3299 13193 2.017049 GTGCAAACACTCTTCCACTGT 58.983 47.619 0.00 0.00 43.85 3.55
3306 13200 3.088532 TGAAACTGGTGCAAACACTCTT 58.911 40.909 0.00 0.00 46.57 2.85
3448 14519 5.836898 TCTCCTGGTAACTCTTGTAACTCAA 59.163 40.000 0.00 0.00 37.61 3.02
3459 14530 5.543507 ATCATCATGTCTCCTGGTAACTC 57.456 43.478 0.00 0.00 37.61 3.01
3469 14540 3.326006 TCCCAGGCTTATCATCATGTCTC 59.674 47.826 0.00 0.00 0.00 3.36
3548 14619 2.949447 AGGTTGTTCAGCTGACCAATT 58.051 42.857 26.72 16.58 34.60 2.32
3587 14658 6.481313 CACAACCATCTCTAGTATCCACAATG 59.519 42.308 0.00 0.00 0.00 2.82
3729 14801 4.635765 CCAAGAGAACAACAACTCACTCAA 59.364 41.667 0.00 0.00 35.83 3.02
3775 14847 2.225255 TCGTTGCATGCTTCATTTTCGA 59.775 40.909 20.33 13.07 0.00 3.71
3938 15019 8.280084 ACTACAGGTATATTCTGACACCTTCTA 58.720 37.037 11.46 0.00 39.40 2.10
3940 15021 7.349412 ACTACAGGTATATTCTGACACCTTC 57.651 40.000 11.46 0.00 39.40 3.46
3948 15029 7.039714 TGACAGCCATACTACAGGTATATTCTG 60.040 40.741 4.98 4.98 38.92 3.02
4020 15101 5.693104 CCATGCAAAGGTTATCACATAATGC 59.307 40.000 0.00 0.00 32.88 3.56
4043 15124 4.031611 AGGTATTGTGTCCTCTACCTTCC 58.968 47.826 0.00 0.00 40.82 3.46
4065 15146 8.698973 TTCAAGTTTGGGAAAATATGTACAGA 57.301 30.769 0.33 0.00 0.00 3.41
4068 15149 9.626045 CTTCTTCAAGTTTGGGAAAATATGTAC 57.374 33.333 0.00 0.00 0.00 2.90
4085 15166 2.800250 ACCAAGGCCATCTTCTTCAAG 58.200 47.619 5.01 0.00 32.41 3.02
4099 15180 6.535540 TCTAGACTATGTAGCTCTACCAAGG 58.464 44.000 0.00 0.00 35.26 3.61
4126 15207 1.091771 CGCTCTGGTTACTGCCCATG 61.092 60.000 0.00 0.00 0.00 3.66
4138 15219 1.115467 AATAGACACTCCCGCTCTGG 58.885 55.000 0.00 0.00 37.55 3.86
4142 15223 2.297597 GCTATCAATAGACACTCCCGCT 59.702 50.000 1.15 0.00 32.05 5.52
4193 15274 2.288961 TAGGGCAGTCGTCGATTTTC 57.711 50.000 0.00 0.00 0.00 2.29
4255 15339 5.755849 ACCATGAAACCTTCCCACTAATAG 58.244 41.667 0.00 0.00 0.00 1.73
4256 15340 5.491078 AGACCATGAAACCTTCCCACTAATA 59.509 40.000 0.00 0.00 0.00 0.98
4267 15351 3.251484 TCCTTCTCAGACCATGAAACCT 58.749 45.455 0.00 0.00 37.52 3.50
4269 15353 4.249661 GTCTCCTTCTCAGACCATGAAAC 58.750 47.826 0.00 0.00 37.52 2.78
4294 15400 2.103432 TCAGGTAAACACTGAAGCGGAA 59.897 45.455 0.00 0.00 41.66 4.30
4295 15401 1.689813 TCAGGTAAACACTGAAGCGGA 59.310 47.619 0.00 0.00 41.66 5.54
4302 15408 5.600696 AGGCAAAATTTCAGGTAAACACTG 58.399 37.500 0.00 0.00 37.30 3.66
4312 15420 5.185635 TCAAGGGATGTAGGCAAAATTTCAG 59.814 40.000 0.00 0.00 0.00 3.02
4313 15421 5.083122 TCAAGGGATGTAGGCAAAATTTCA 58.917 37.500 0.00 0.00 0.00 2.69
4316 15424 5.543790 ACTTTCAAGGGATGTAGGCAAAATT 59.456 36.000 0.00 0.00 0.00 1.82
4339 15465 1.284297 GAAGCCCACAATGCGCAAAC 61.284 55.000 17.11 0.00 0.00 2.93
4346 15472 1.176527 AATGTCGGAAGCCCACAATG 58.823 50.000 0.00 0.00 30.95 2.82
4351 15477 0.893270 CACCAAATGTCGGAAGCCCA 60.893 55.000 0.00 0.00 0.00 5.36
4363 15489 2.282180 AAGACGGCGCCACCAAAT 60.282 55.556 28.98 3.67 39.03 2.32
4375 15501 4.457834 AGATCTCCAAGGTTACAAGACG 57.542 45.455 0.00 0.00 0.00 4.18
4381 15507 4.572795 GCTTTGCTAGATCTCCAAGGTTAC 59.427 45.833 0.00 0.00 0.00 2.50
4382 15508 4.471386 AGCTTTGCTAGATCTCCAAGGTTA 59.529 41.667 0.00 0.00 36.99 2.85
4397 15523 2.573369 CATAGATGCCTCAGCTTTGCT 58.427 47.619 0.00 0.00 40.77 3.91
4498 15624 0.250234 TTCCTCCATCGCTGGACAAG 59.750 55.000 3.28 0.00 46.95 3.16
4525 15651 0.951040 CAACCGCTGAAGGAGACCAC 60.951 60.000 0.00 0.00 34.73 4.16
4558 15684 1.618837 GGCAGACCGATATGCTTAGGA 59.381 52.381 0.00 0.00 42.91 2.94
4573 15699 1.600636 CTTTGCAACTCGGGGCAGA 60.601 57.895 0.00 0.00 41.68 4.26
4632 15758 7.553334 TCTGGAATGTATTTATACGGGATAGC 58.447 38.462 0.00 0.00 36.06 2.97
4640 15766 8.429641 TCTGGTTCCTCTGGAATGTATTTATAC 58.570 37.037 2.17 0.00 44.04 1.47
4658 15784 1.072331 TCTGGTTCTGCTTCTGGTTCC 59.928 52.381 0.00 0.00 0.00 3.62
4674 15821 1.614903 TGCTTTTGGTGCTGATTCTGG 59.385 47.619 0.00 0.00 0.00 3.86
4763 15922 6.239217 TGCACACCTCAGTTATTATCAGAT 57.761 37.500 0.00 0.00 0.00 2.90
4856 16042 2.143876 AAAACAAGCAGTCAGTGGGT 57.856 45.000 0.00 0.00 0.00 4.51
4939 16193 3.379445 GGAGGAACCAGCGGTCGA 61.379 66.667 0.69 0.00 33.12 4.20
5130 16576 4.955925 CAAGTATTGTGCGGAATTGGTA 57.044 40.909 0.00 0.00 42.34 3.25
5159 16605 6.519679 TTTATGATGCAGAACAGATGCTTT 57.480 33.333 0.00 0.00 44.17 3.51
5162 16610 6.068473 TGATTTATGATGCAGAACAGATGC 57.932 37.500 0.00 0.00 44.11 3.91
5192 16661 6.378710 AGCATTTTGTCATCATCTCAGATG 57.621 37.500 8.54 8.54 45.28 2.90
5220 16689 4.071961 TCCGTGATGGTTATCAAGATGG 57.928 45.455 5.06 0.60 44.49 3.51
5221 16690 6.624352 ATTTCCGTGATGGTTATCAAGATG 57.376 37.500 5.06 0.00 44.49 2.90
5222 16691 6.039717 CCAATTTCCGTGATGGTTATCAAGAT 59.960 38.462 5.06 0.00 44.49 2.40
5223 16692 5.356751 CCAATTTCCGTGATGGTTATCAAGA 59.643 40.000 5.06 0.00 44.49 3.02
5224 16693 5.125417 ACCAATTTCCGTGATGGTTATCAAG 59.875 40.000 0.00 0.00 43.47 3.02
5225 16694 5.013547 ACCAATTTCCGTGATGGTTATCAA 58.986 37.500 0.00 0.00 43.47 2.57
5226 16695 4.594970 ACCAATTTCCGTGATGGTTATCA 58.405 39.130 0.00 0.00 43.47 2.15
5254 16754 7.337184 TGAGAGACACGAAATCAGTATCTAGTT 59.663 37.037 0.00 0.00 34.33 2.24
5292 16793 4.687948 GCGTTGCAGATGACTATCATACAT 59.312 41.667 0.00 0.00 37.20 2.29
5326 16827 6.325919 TGGAAAATGAGCTCGTTTGTTAAT 57.674 33.333 29.73 16.61 35.45 1.40
5328 16829 5.698832 CATGGAAAATGAGCTCGTTTGTTA 58.301 37.500 29.73 19.78 35.45 2.41
5390 16907 7.255590 CCCGACAATAATCCAAAGCAAGATAAT 60.256 37.037 0.00 0.00 0.00 1.28
5406 16930 5.365605 AGTGGTATCTGAATCCCGACAATAA 59.634 40.000 0.00 0.00 0.00 1.40
5408 16932 3.711704 AGTGGTATCTGAATCCCGACAAT 59.288 43.478 0.00 0.00 0.00 2.71
5409 16933 3.104512 AGTGGTATCTGAATCCCGACAA 58.895 45.455 0.00 0.00 0.00 3.18
5414 16938 2.821991 CCGAGTGGTATCTGAATCCC 57.178 55.000 0.00 0.00 0.00 3.85
5431 16955 4.170062 CTTGCGCTGCCATCACCG 62.170 66.667 9.73 0.00 0.00 4.94
5432 16956 1.865788 TTTCTTGCGCTGCCATCACC 61.866 55.000 9.73 0.00 0.00 4.02
5439 16963 1.343506 CTTGGATTTTCTTGCGCTGC 58.656 50.000 9.73 0.00 0.00 5.25
5440 16964 1.068055 AGCTTGGATTTTCTTGCGCTG 60.068 47.619 9.73 1.08 0.00 5.18
5443 16967 2.030893 TCACAGCTTGGATTTTCTTGCG 60.031 45.455 0.00 0.00 0.00 4.85
5447 16974 3.930634 GCTTCACAGCTTGGATTTTCT 57.069 42.857 0.00 0.00 43.51 2.52
5496 17023 0.782384 CACGCAACTTGTACGGAGAC 59.218 55.000 3.36 0.00 0.00 3.36
5502 17029 4.552767 GCATATCATCCACGCAACTTGTAC 60.553 45.833 0.00 0.00 0.00 2.90
5508 17041 2.032549 GTCAGCATATCATCCACGCAAC 60.033 50.000 0.00 0.00 0.00 4.17
5512 17045 3.103447 ACTGTCAGCATATCATCCACG 57.897 47.619 0.00 0.00 0.00 4.94
5551 17085 6.203530 CAGGTACATTGATTGATCGCATTAGT 59.796 38.462 0.00 0.00 0.00 2.24
5558 17092 3.249320 CCTGCAGGTACATTGATTGATCG 59.751 47.826 25.53 0.00 0.00 3.69
5716 17283 1.079127 CTGGGGAAAGCGACGACAT 60.079 57.895 0.00 0.00 0.00 3.06
5717 17284 2.154798 CTCTGGGGAAAGCGACGACA 62.155 60.000 0.00 0.00 0.00 4.35
5732 17299 6.315642 ATGCACACATGTAGAGAAAATCTCTG 59.684 38.462 17.87 6.50 43.60 3.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.