Multiple sequence alignment - TraesCS7D01G122900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G122900 chr7D 100.000 5186 0 0 1 5186 76918374 76923559 0.000000e+00 9577.0
1 TraesCS7D01G122900 chr7D 90.009 3263 252 29 850 4077 76743476 76746699 0.000000e+00 4152.0
2 TraesCS7D01G122900 chr7D 85.559 3490 401 47 1755 5186 76930729 76934173 0.000000e+00 3557.0
3 TraesCS7D01G122900 chr7D 85.479 3285 392 56 850 4084 76784085 76787334 0.000000e+00 3345.0
4 TraesCS7D01G122900 chr7D 91.224 1846 126 18 2235 4066 77045885 77047708 0.000000e+00 2479.0
5 TraesCS7D01G122900 chr7D 91.191 1771 76 27 383 2098 76953986 76955731 0.000000e+00 2333.0
6 TraesCS7D01G122900 chr7D 85.837 2210 271 22 1897 4082 76973468 76975659 0.000000e+00 2309.0
7 TraesCS7D01G122900 chr7D 84.872 1950 228 38 2128 4051 76955728 76957636 0.000000e+00 1905.0
8 TraesCS7D01G122900 chr7D 83.986 1736 252 23 963 2682 7548417 7550142 0.000000e+00 1642.0
9 TraesCS7D01G122900 chr7D 87.179 1443 157 7 828 2258 76947289 76948715 0.000000e+00 1615.0
10 TraesCS7D01G122900 chr7D 82.715 1724 273 20 969 2678 8256015 8254303 0.000000e+00 1509.0
11 TraesCS7D01G122900 chr7D 85.901 993 106 11 3103 4085 76948728 76949696 0.000000e+00 1027.0
12 TraesCS7D01G122900 chr7D 88.889 396 28 5 4791 5186 76787812 76788191 1.690000e-129 473.0
13 TraesCS7D01G122900 chr7D 81.326 573 74 17 3723 4271 76622377 76621814 7.980000e-118 435.0
14 TraesCS7D01G122900 chr7D 99.153 236 2 0 379 614 76946991 76946756 4.800000e-115 425.0
15 TraesCS7D01G122900 chr7D 86.523 371 33 6 4787 5149 77048587 77048948 4.870000e-105 392.0
16 TraesCS7D01G122900 chr7D 89.137 313 32 2 1 312 76794531 76794842 6.300000e-104 388.0
17 TraesCS7D01G122900 chr7D 87.748 302 24 4 4789 5089 76958468 76958757 1.790000e-89 340.0
18 TraesCS7D01G122900 chr7D 86.408 103 12 2 517 619 76946635 76946535 1.530000e-20 111.0
19 TraesCS7D01G122900 chr7A 90.783 3244 244 25 850 4065 80861901 80865117 0.000000e+00 4283.0
20 TraesCS7D01G122900 chr7A 79.190 2518 443 55 933 3417 56174207 56176676 0.000000e+00 1672.0
21 TraesCS7D01G122900 chr7A 81.942 1689 285 17 1000 2678 8695008 8693330 0.000000e+00 1411.0
22 TraesCS7D01G122900 chr7A 85.390 308 31 6 4789 5089 80866000 80866300 1.810000e-79 307.0
23 TraesCS7D01G122900 chr7B 86.285 3252 379 41 850 4066 23596621 23599840 0.000000e+00 3472.0
24 TraesCS7D01G122900 chr7B 86.656 3020 348 28 1091 4085 23958164 23961153 0.000000e+00 3293.0
25 TraesCS7D01G122900 chr7B 84.819 3287 408 47 829 4053 23582201 23585458 0.000000e+00 3221.0
26 TraesCS7D01G122900 chr7B 85.877 2542 282 40 1739 4232 23525371 23527883 0.000000e+00 2634.0
27 TraesCS7D01G122900 chr7B 86.358 2375 279 23 1759 4107 23516981 23519336 0.000000e+00 2549.0
28 TraesCS7D01G122900 chr7B 81.932 2557 343 58 1755 4272 23934186 23936662 0.000000e+00 2052.0
29 TraesCS7D01G122900 chr7B 86.340 1896 202 21 2780 4637 23639655 23641531 0.000000e+00 2013.0
30 TraesCS7D01G122900 chr7B 84.764 466 36 14 347 788 23523887 23524341 7.980000e-118 435.0
31 TraesCS7D01G122900 chr7B 90.217 276 19 1 4090 4365 23961194 23961461 2.300000e-93 353.0
32 TraesCS7D01G122900 chr7B 88.015 267 23 3 4789 5055 23529066 23529323 1.810000e-79 307.0
33 TraesCS7D01G122900 chr7B 85.091 275 26 6 4883 5149 23600574 23600841 3.080000e-67 267.0
34 TraesCS7D01G122900 chr7B 92.308 104 7 1 4632 4735 23641557 23641659 4.180000e-31 147.0
35 TraesCS7D01G122900 chr7B 79.259 135 15 8 347 473 23932941 23932812 1.200000e-11 82.4
36 TraesCS7D01G122900 chr3B 84.323 1735 248 19 963 2682 741463197 741464922 0.000000e+00 1676.0
37 TraesCS7D01G122900 chr4A 84.730 1683 243 9 951 2623 731616830 731615152 0.000000e+00 1672.0
38 TraesCS7D01G122900 chr4A 82.183 1695 286 11 933 2615 731664130 731662440 0.000000e+00 1443.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G122900 chr7D 76918374 76923559 5185 False 9577.000000 9577 100.000000 1 5186 1 chr7D.!!$F4 5185
1 TraesCS7D01G122900 chr7D 76743476 76746699 3223 False 4152.000000 4152 90.009000 850 4077 1 chr7D.!!$F2 3227
2 TraesCS7D01G122900 chr7D 76930729 76934173 3444 False 3557.000000 3557 85.559000 1755 5186 1 chr7D.!!$F5 3431
3 TraesCS7D01G122900 chr7D 76973468 76975659 2191 False 2309.000000 2309 85.837000 1897 4082 1 chr7D.!!$F6 2185
4 TraesCS7D01G122900 chr7D 76784085 76788191 4106 False 1909.000000 3345 87.184000 850 5186 2 chr7D.!!$F7 4336
5 TraesCS7D01G122900 chr7D 7548417 7550142 1725 False 1642.000000 1642 83.986000 963 2682 1 chr7D.!!$F1 1719
6 TraesCS7D01G122900 chr7D 76953986 76958757 4771 False 1526.000000 2333 87.937000 383 5089 3 chr7D.!!$F9 4706
7 TraesCS7D01G122900 chr7D 8254303 8256015 1712 True 1509.000000 1509 82.715000 969 2678 1 chr7D.!!$R1 1709
8 TraesCS7D01G122900 chr7D 77045885 77048948 3063 False 1435.500000 2479 88.873500 2235 5149 2 chr7D.!!$F10 2914
9 TraesCS7D01G122900 chr7D 76947289 76949696 2407 False 1321.000000 1615 86.540000 828 4085 2 chr7D.!!$F8 3257
10 TraesCS7D01G122900 chr7D 76621814 76622377 563 True 435.000000 435 81.326000 3723 4271 1 chr7D.!!$R2 548
11 TraesCS7D01G122900 chr7A 80861901 80866300 4399 False 2295.000000 4283 88.086500 850 5089 2 chr7A.!!$F2 4239
12 TraesCS7D01G122900 chr7A 56174207 56176676 2469 False 1672.000000 1672 79.190000 933 3417 1 chr7A.!!$F1 2484
13 TraesCS7D01G122900 chr7A 8693330 8695008 1678 True 1411.000000 1411 81.942000 1000 2678 1 chr7A.!!$R1 1678
14 TraesCS7D01G122900 chr7B 23582201 23585458 3257 False 3221.000000 3221 84.819000 829 4053 1 chr7B.!!$F2 3224
15 TraesCS7D01G122900 chr7B 23516981 23519336 2355 False 2549.000000 2549 86.358000 1759 4107 1 chr7B.!!$F1 2348
16 TraesCS7D01G122900 chr7B 23934186 23936662 2476 False 2052.000000 2052 81.932000 1755 4272 1 chr7B.!!$F3 2517
17 TraesCS7D01G122900 chr7B 23596621 23600841 4220 False 1869.500000 3472 85.688000 850 5149 2 chr7B.!!$F5 4299
18 TraesCS7D01G122900 chr7B 23958164 23961461 3297 False 1823.000000 3293 88.436500 1091 4365 2 chr7B.!!$F7 3274
19 TraesCS7D01G122900 chr7B 23523887 23529323 5436 False 1125.333333 2634 86.218667 347 5055 3 chr7B.!!$F4 4708
20 TraesCS7D01G122900 chr7B 23639655 23641659 2004 False 1080.000000 2013 89.324000 2780 4735 2 chr7B.!!$F6 1955
21 TraesCS7D01G122900 chr3B 741463197 741464922 1725 False 1676.000000 1676 84.323000 963 2682 1 chr3B.!!$F1 1719
22 TraesCS7D01G122900 chr4A 731615152 731616830 1678 True 1672.000000 1672 84.730000 951 2623 1 chr4A.!!$R1 1672
23 TraesCS7D01G122900 chr4A 731662440 731664130 1690 True 1443.000000 1443 82.183000 933 2615 1 chr4A.!!$R2 1682

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
214 215 0.036483 TGCGGCTGATGCTCTAAACA 60.036 50.000 0.00 0.0 39.59 2.83 F
320 321 0.101040 TGCCATACGCGTACACCTAC 59.899 55.000 23.19 8.7 42.08 3.18 F
329 330 0.241749 CGTACACCTACGCTGGTTCA 59.758 55.000 0.00 0.0 39.43 3.18 F
330 331 1.135199 CGTACACCTACGCTGGTTCAT 60.135 52.381 0.00 0.0 39.43 2.57 F
1298 1402 1.201429 ATCGGCAAGTCCACTTCCCT 61.201 55.000 0.00 0.0 31.53 4.20 F
2751 2975 0.991146 TGCATTGGCTGGGTTCTAGA 59.009 50.000 0.00 0.0 41.91 2.43 F
2803 3027 1.254954 ACGGTACCTTGACCTCTCAC 58.745 55.000 10.90 0.0 37.34 3.51 F
3897 4169 0.532573 TGGATGGCGTCACTTCTCTC 59.467 55.000 9.27 0.0 0.00 3.20 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1644 1748 0.403271 ACTGGAAATGCTGCTGGACT 59.597 50.000 0.00 0.0 0.00 3.85 R
1858 2004 2.107204 ACAGTGGCTTCAGTTCATCCTT 59.893 45.455 0.00 0.0 0.00 3.36 R
1987 2133 8.431222 TGAAAACAATTCCCATGAATCTTCTTT 58.569 29.630 0.00 0.0 40.34 2.52 R
2354 2502 5.945784 TGAGTTAAATCCATTGTTCCCTCTG 59.054 40.000 0.00 0.0 0.00 3.35 R
2875 3099 1.038681 TGTCGTAGCCCCTCGCAATA 61.039 55.000 0.00 0.0 41.38 1.90 R
3897 4169 0.105039 GAGTGATTACCAGCTCCCGG 59.895 60.000 0.00 0.0 0.00 5.73 R
3978 4264 0.179018 GGCAGCCCACTATGGTTAGG 60.179 60.000 0.00 0.0 35.17 2.69 R
5115 6698 0.179073 ACGGCCACAGCATGATCTAC 60.179 55.000 2.24 0.0 42.56 2.59 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 9.970395 TTAAGCTGCAGAAAATATAATGATTGG 57.030 29.630 20.43 0.00 0.00 3.16
30 31 7.592885 AGCTGCAGAAAATATAATGATTGGT 57.407 32.000 20.43 0.00 0.00 3.67
31 32 8.015185 AGCTGCAGAAAATATAATGATTGGTT 57.985 30.769 20.43 0.00 0.00 3.67
32 33 9.135189 AGCTGCAGAAAATATAATGATTGGTTA 57.865 29.630 20.43 0.00 0.00 2.85
33 34 9.185192 GCTGCAGAAAATATAATGATTGGTTAC 57.815 33.333 20.43 0.00 0.00 2.50
34 35 9.683069 CTGCAGAAAATATAATGATTGGTTACC 57.317 33.333 8.42 0.00 0.00 2.85
35 36 8.637986 TGCAGAAAATATAATGATTGGTTACCC 58.362 33.333 0.00 0.00 0.00 3.69
36 37 8.637986 GCAGAAAATATAATGATTGGTTACCCA 58.362 33.333 0.00 0.00 39.65 4.51
45 46 7.969690 AATGATTGGTTACCCATTTGATACA 57.030 32.000 0.00 0.00 41.49 2.29
46 47 6.767524 TGATTGGTTACCCATTTGATACAC 57.232 37.500 0.00 0.00 41.49 2.90
47 48 6.489603 TGATTGGTTACCCATTTGATACACT 58.510 36.000 0.00 0.00 41.49 3.55
48 49 6.376864 TGATTGGTTACCCATTTGATACACTG 59.623 38.462 0.00 0.00 41.49 3.66
49 50 5.506730 TGGTTACCCATTTGATACACTGA 57.493 39.130 0.00 0.00 35.17 3.41
50 51 5.882040 TGGTTACCCATTTGATACACTGAA 58.118 37.500 0.00 0.00 35.17 3.02
51 52 5.943416 TGGTTACCCATTTGATACACTGAAG 59.057 40.000 0.00 0.00 35.17 3.02
52 53 6.177610 GGTTACCCATTTGATACACTGAAGA 58.822 40.000 0.00 0.00 0.00 2.87
53 54 6.316390 GGTTACCCATTTGATACACTGAAGAG 59.684 42.308 0.00 0.00 0.00 2.85
54 55 4.848357 ACCCATTTGATACACTGAAGAGG 58.152 43.478 0.00 0.00 0.00 3.69
55 56 4.536090 ACCCATTTGATACACTGAAGAGGA 59.464 41.667 0.00 0.00 0.00 3.71
56 57 5.014123 ACCCATTTGATACACTGAAGAGGAA 59.986 40.000 0.00 0.00 0.00 3.36
57 58 5.945784 CCCATTTGATACACTGAAGAGGAAA 59.054 40.000 0.00 0.00 0.00 3.13
58 59 6.434028 CCCATTTGATACACTGAAGAGGAAAA 59.566 38.462 0.00 0.00 0.00 2.29
59 60 7.308435 CCATTTGATACACTGAAGAGGAAAAC 58.692 38.462 0.00 0.00 0.00 2.43
60 61 7.175641 CCATTTGATACACTGAAGAGGAAAACT 59.824 37.037 0.00 0.00 0.00 2.66
61 62 7.496529 TTTGATACACTGAAGAGGAAAACTG 57.503 36.000 0.00 0.00 0.00 3.16
62 63 6.419484 TGATACACTGAAGAGGAAAACTGA 57.581 37.500 0.00 0.00 0.00 3.41
63 64 6.826668 TGATACACTGAAGAGGAAAACTGAA 58.173 36.000 0.00 0.00 0.00 3.02
64 65 7.279615 TGATACACTGAAGAGGAAAACTGAAA 58.720 34.615 0.00 0.00 0.00 2.69
65 66 7.773224 TGATACACTGAAGAGGAAAACTGAAAA 59.227 33.333 0.00 0.00 0.00 2.29
66 67 6.834168 ACACTGAAGAGGAAAACTGAAAAA 57.166 33.333 0.00 0.00 0.00 1.94
67 68 6.621613 ACACTGAAGAGGAAAACTGAAAAAC 58.378 36.000 0.00 0.00 0.00 2.43
68 69 6.434340 ACACTGAAGAGGAAAACTGAAAAACT 59.566 34.615 0.00 0.00 0.00 2.66
69 70 7.610305 ACACTGAAGAGGAAAACTGAAAAACTA 59.390 33.333 0.00 0.00 0.00 2.24
70 71 8.624776 CACTGAAGAGGAAAACTGAAAAACTAT 58.375 33.333 0.00 0.00 0.00 2.12
71 72 9.847224 ACTGAAGAGGAAAACTGAAAAACTATA 57.153 29.630 0.00 0.00 0.00 1.31
95 96 4.816109 TCCCACTAGGAGCATGCT 57.184 55.556 22.92 22.92 40.93 3.79
96 97 3.946242 TCCCACTAGGAGCATGCTA 57.054 52.632 22.74 3.98 40.93 3.49
97 98 2.174685 TCCCACTAGGAGCATGCTAA 57.825 50.000 22.74 8.48 39.04 3.09
98 99 2.477245 TCCCACTAGGAGCATGCTAAA 58.523 47.619 22.74 8.09 39.04 1.85
99 100 3.048600 TCCCACTAGGAGCATGCTAAAT 58.951 45.455 22.74 12.03 39.04 1.40
100 101 3.459598 TCCCACTAGGAGCATGCTAAATT 59.540 43.478 22.74 8.99 39.04 1.82
101 102 4.079787 TCCCACTAGGAGCATGCTAAATTT 60.080 41.667 22.74 7.14 39.04 1.82
102 103 4.276926 CCCACTAGGAGCATGCTAAATTTC 59.723 45.833 22.74 7.04 39.04 2.17
103 104 4.024556 CCACTAGGAGCATGCTAAATTTCG 60.025 45.833 22.74 8.11 39.04 3.46
104 105 4.811024 CACTAGGAGCATGCTAAATTTCGA 59.189 41.667 22.74 2.20 39.04 3.71
105 106 5.294306 CACTAGGAGCATGCTAAATTTCGAA 59.706 40.000 22.74 0.00 39.04 3.71
106 107 4.889832 AGGAGCATGCTAAATTTCGAAG 57.110 40.909 22.74 0.00 31.62 3.79
107 108 4.517285 AGGAGCATGCTAAATTTCGAAGA 58.483 39.130 22.74 0.00 31.62 2.87
108 109 5.128919 AGGAGCATGCTAAATTTCGAAGAT 58.871 37.500 22.74 0.00 31.62 2.40
109 110 5.238214 AGGAGCATGCTAAATTTCGAAGATC 59.762 40.000 22.74 2.48 31.62 2.75
110 111 5.008019 GGAGCATGCTAAATTTCGAAGATCA 59.992 40.000 22.74 0.00 35.04 2.92
111 112 6.441093 AGCATGCTAAATTTCGAAGATCAA 57.559 33.333 21.21 0.00 35.04 2.57
112 113 6.261118 AGCATGCTAAATTTCGAAGATCAAC 58.739 36.000 21.21 0.00 35.04 3.18
113 114 6.029607 GCATGCTAAATTTCGAAGATCAACA 58.970 36.000 11.37 0.00 35.04 3.33
114 115 6.694411 GCATGCTAAATTTCGAAGATCAACAT 59.306 34.615 11.37 0.00 35.04 2.71
115 116 7.221452 GCATGCTAAATTTCGAAGATCAACATT 59.779 33.333 11.37 0.00 35.04 2.71
116 117 9.720667 CATGCTAAATTTCGAAGATCAACATTA 57.279 29.630 0.00 0.00 35.04 1.90
123 124 9.613428 AATTTCGAAGATCAACATTATAGTGGA 57.387 29.630 0.00 0.00 35.04 4.02
124 125 9.613428 ATTTCGAAGATCAACATTATAGTGGAA 57.387 29.630 0.00 0.00 35.04 3.53
125 126 9.613428 TTTCGAAGATCAACATTATAGTGGAAT 57.387 29.630 0.00 0.00 35.04 3.01
126 127 8.818141 TCGAAGATCAACATTATAGTGGAATC 57.182 34.615 0.00 0.65 0.00 2.52
127 128 8.642432 TCGAAGATCAACATTATAGTGGAATCT 58.358 33.333 0.00 2.71 0.00 2.40
128 129 8.706936 CGAAGATCAACATTATAGTGGAATCTG 58.293 37.037 0.00 0.00 0.00 2.90
129 130 8.915057 AAGATCAACATTATAGTGGAATCTGG 57.085 34.615 0.00 0.00 0.00 3.86
130 131 8.038862 AGATCAACATTATAGTGGAATCTGGT 57.961 34.615 0.00 0.00 0.00 4.00
131 132 8.497745 AGATCAACATTATAGTGGAATCTGGTT 58.502 33.333 0.00 0.00 0.00 3.67
132 133 9.778741 GATCAACATTATAGTGGAATCTGGTTA 57.221 33.333 0.00 0.00 0.00 2.85
133 134 9.784531 ATCAACATTATAGTGGAATCTGGTTAG 57.215 33.333 0.00 0.00 0.00 2.34
134 135 7.715249 TCAACATTATAGTGGAATCTGGTTAGC 59.285 37.037 0.00 0.00 0.00 3.09
135 136 6.534634 ACATTATAGTGGAATCTGGTTAGCC 58.465 40.000 0.00 0.00 0.00 3.93
136 137 6.101150 ACATTATAGTGGAATCTGGTTAGCCA 59.899 38.462 0.00 0.00 43.73 4.75
137 138 6.569127 TTATAGTGGAATCTGGTTAGCCAA 57.431 37.500 0.00 0.00 45.51 4.52
138 139 3.806949 AGTGGAATCTGGTTAGCCAAA 57.193 42.857 0.00 0.00 45.51 3.28
139 140 4.112634 AGTGGAATCTGGTTAGCCAAAA 57.887 40.909 0.00 0.00 45.51 2.44
140 141 4.479158 AGTGGAATCTGGTTAGCCAAAAA 58.521 39.130 0.00 0.00 45.51 1.94
141 142 4.280929 AGTGGAATCTGGTTAGCCAAAAAC 59.719 41.667 0.00 0.00 45.51 2.43
142 143 4.038642 GTGGAATCTGGTTAGCCAAAAACA 59.961 41.667 0.00 0.00 45.51 2.83
143 144 4.038642 TGGAATCTGGTTAGCCAAAAACAC 59.961 41.667 0.00 0.00 45.51 3.32
144 145 4.280929 GGAATCTGGTTAGCCAAAAACACT 59.719 41.667 0.00 0.00 45.51 3.55
145 146 4.853924 ATCTGGTTAGCCAAAAACACTG 57.146 40.909 0.00 0.00 45.51 3.66
146 147 3.626930 TCTGGTTAGCCAAAAACACTGT 58.373 40.909 0.00 0.00 45.51 3.55
147 148 4.783055 TCTGGTTAGCCAAAAACACTGTA 58.217 39.130 0.00 0.00 45.51 2.74
148 149 4.819630 TCTGGTTAGCCAAAAACACTGTAG 59.180 41.667 0.00 0.00 45.51 2.74
149 150 3.316868 TGGTTAGCCAAAAACACTGTAGC 59.683 43.478 0.00 0.00 42.83 3.58
150 151 3.568430 GGTTAGCCAAAAACACTGTAGCT 59.432 43.478 0.00 0.00 34.09 3.32
151 152 4.758165 GGTTAGCCAAAAACACTGTAGCTA 59.242 41.667 0.00 0.00 34.09 3.32
152 153 5.106673 GGTTAGCCAAAAACACTGTAGCTAG 60.107 44.000 0.00 0.00 33.31 3.42
153 154 2.814336 AGCCAAAAACACTGTAGCTAGC 59.186 45.455 6.62 6.62 0.00 3.42
154 155 2.552315 GCCAAAAACACTGTAGCTAGCA 59.448 45.455 18.83 0.00 0.00 3.49
155 156 3.609409 GCCAAAAACACTGTAGCTAGCAC 60.609 47.826 18.83 13.33 0.00 4.40
156 157 3.815401 CCAAAAACACTGTAGCTAGCACT 59.185 43.478 18.83 0.00 0.00 4.40
157 158 4.994852 CCAAAAACACTGTAGCTAGCACTA 59.005 41.667 18.83 0.00 0.00 2.74
158 159 5.120830 CCAAAAACACTGTAGCTAGCACTAG 59.879 44.000 18.83 13.39 36.29 2.57
168 169 2.941453 CTAGCACTAGCCGAAACTGA 57.059 50.000 0.00 0.00 43.56 3.41
169 170 3.232213 CTAGCACTAGCCGAAACTGAA 57.768 47.619 0.00 0.00 43.56 3.02
170 171 2.770164 AGCACTAGCCGAAACTGAAT 57.230 45.000 0.00 0.00 43.56 2.57
171 172 3.059352 AGCACTAGCCGAAACTGAATT 57.941 42.857 0.00 0.00 43.56 2.17
172 173 3.412386 AGCACTAGCCGAAACTGAATTT 58.588 40.909 0.00 0.00 43.56 1.82
173 174 3.189287 AGCACTAGCCGAAACTGAATTTG 59.811 43.478 0.00 0.00 43.56 2.32
174 175 3.670627 GCACTAGCCGAAACTGAATTTGG 60.671 47.826 0.00 0.00 33.58 3.28
175 176 3.081804 ACTAGCCGAAACTGAATTTGGG 58.918 45.455 0.00 0.00 46.29 4.12
176 177 1.995376 AGCCGAAACTGAATTTGGGT 58.005 45.000 2.94 4.02 45.52 4.51
177 178 3.149005 AGCCGAAACTGAATTTGGGTA 57.851 42.857 7.00 0.00 45.52 3.69
178 179 3.081804 AGCCGAAACTGAATTTGGGTAG 58.918 45.455 7.00 0.00 45.52 3.18
179 180 2.817844 GCCGAAACTGAATTTGGGTAGT 59.182 45.455 2.94 0.00 45.52 2.73
180 181 4.004982 GCCGAAACTGAATTTGGGTAGTA 58.995 43.478 2.94 0.00 45.52 1.82
181 182 4.456566 GCCGAAACTGAATTTGGGTAGTAA 59.543 41.667 2.94 0.00 45.52 2.24
182 183 5.618418 GCCGAAACTGAATTTGGGTAGTAAC 60.618 44.000 2.94 0.00 45.52 2.50
183 184 5.470777 CCGAAACTGAATTTGGGTAGTAACA 59.529 40.000 0.00 0.00 40.40 2.41
184 185 6.016943 CCGAAACTGAATTTGGGTAGTAACAA 60.017 38.462 0.00 0.00 40.40 2.83
185 186 7.419204 CGAAACTGAATTTGGGTAGTAACAAA 58.581 34.615 4.35 4.35 40.44 2.83
186 187 7.377662 CGAAACTGAATTTGGGTAGTAACAAAC 59.622 37.037 4.04 0.00 39.15 2.93
187 188 6.644248 ACTGAATTTGGGTAGTAACAAACC 57.356 37.500 4.04 0.00 39.15 3.27
188 189 6.130569 ACTGAATTTGGGTAGTAACAAACCA 58.869 36.000 4.04 0.00 39.15 3.67
189 190 6.040054 ACTGAATTTGGGTAGTAACAAACCAC 59.960 38.462 4.04 1.47 39.15 4.16
190 191 6.130569 TGAATTTGGGTAGTAACAAACCACT 58.869 36.000 4.04 0.00 39.15 4.00
191 192 7.288560 TGAATTTGGGTAGTAACAAACCACTA 58.711 34.615 4.04 0.00 39.15 2.74
192 193 7.446013 TGAATTTGGGTAGTAACAAACCACTAG 59.554 37.037 4.04 0.00 39.15 2.57
193 194 5.892524 TTGGGTAGTAACAAACCACTAGT 57.107 39.130 0.00 0.00 37.51 2.57
194 195 5.473066 TGGGTAGTAACAAACCACTAGTC 57.527 43.478 0.00 0.00 37.51 2.59
195 196 5.149976 TGGGTAGTAACAAACCACTAGTCT 58.850 41.667 0.00 0.00 37.51 3.24
196 197 5.011329 TGGGTAGTAACAAACCACTAGTCTG 59.989 44.000 0.00 0.00 37.51 3.51
197 198 4.928020 GGTAGTAACAAACCACTAGTCTGC 59.072 45.833 0.00 0.00 35.73 4.26
198 199 3.650139 AGTAACAAACCACTAGTCTGCG 58.350 45.455 0.00 0.00 0.00 5.18
199 200 1.878953 AACAAACCACTAGTCTGCGG 58.121 50.000 0.00 0.00 0.00 5.69
200 201 0.602905 ACAAACCACTAGTCTGCGGC 60.603 55.000 0.00 0.00 0.00 6.53
201 202 0.320771 CAAACCACTAGTCTGCGGCT 60.321 55.000 0.00 0.00 0.00 5.52
202 203 0.320771 AAACCACTAGTCTGCGGCTG 60.321 55.000 0.00 0.00 0.00 4.85
203 204 1.185618 AACCACTAGTCTGCGGCTGA 61.186 55.000 5.38 5.38 0.00 4.26
204 205 0.972983 ACCACTAGTCTGCGGCTGAT 60.973 55.000 12.78 5.22 0.00 2.90
205 206 0.529337 CCACTAGTCTGCGGCTGATG 60.529 60.000 12.78 6.98 0.00 3.07
206 207 1.142748 ACTAGTCTGCGGCTGATGC 59.857 57.895 12.78 1.40 38.76 3.91
207 208 1.326213 ACTAGTCTGCGGCTGATGCT 61.326 55.000 12.78 8.70 39.59 3.79
208 209 0.597118 CTAGTCTGCGGCTGATGCTC 60.597 60.000 12.78 0.34 39.59 4.26
209 210 1.039785 TAGTCTGCGGCTGATGCTCT 61.040 55.000 12.78 7.72 39.59 4.09
210 211 1.039785 AGTCTGCGGCTGATGCTCTA 61.040 55.000 12.78 0.00 39.59 2.43
211 212 0.179100 GTCTGCGGCTGATGCTCTAA 60.179 55.000 12.78 0.00 39.59 2.10
212 213 0.536724 TCTGCGGCTGATGCTCTAAA 59.463 50.000 5.38 0.00 39.59 1.85
213 214 0.654683 CTGCGGCTGATGCTCTAAAC 59.345 55.000 0.00 0.00 39.59 2.01
214 215 0.036483 TGCGGCTGATGCTCTAAACA 60.036 50.000 0.00 0.00 39.59 2.83
215 216 1.303309 GCGGCTGATGCTCTAAACAT 58.697 50.000 0.00 0.00 39.59 2.71
216 217 1.262683 GCGGCTGATGCTCTAAACATC 59.737 52.381 0.00 0.00 43.46 3.06
217 218 1.869767 CGGCTGATGCTCTAAACATCC 59.130 52.381 1.61 0.00 42.68 3.51
218 219 2.742856 CGGCTGATGCTCTAAACATCCA 60.743 50.000 1.61 0.00 42.68 3.41
219 220 2.615912 GGCTGATGCTCTAAACATCCAC 59.384 50.000 1.61 0.00 42.68 4.02
220 221 2.615912 GCTGATGCTCTAAACATCCACC 59.384 50.000 1.61 0.00 42.68 4.61
221 222 3.877559 CTGATGCTCTAAACATCCACCA 58.122 45.455 1.61 0.00 42.68 4.17
222 223 4.264253 CTGATGCTCTAAACATCCACCAA 58.736 43.478 1.61 0.00 42.68 3.67
223 224 4.009675 TGATGCTCTAAACATCCACCAAC 58.990 43.478 1.61 0.00 42.68 3.77
224 225 3.500448 TGCTCTAAACATCCACCAACA 57.500 42.857 0.00 0.00 0.00 3.33
225 226 3.411446 TGCTCTAAACATCCACCAACAG 58.589 45.455 0.00 0.00 0.00 3.16
226 227 3.072330 TGCTCTAAACATCCACCAACAGA 59.928 43.478 0.00 0.00 0.00 3.41
227 228 4.072131 GCTCTAAACATCCACCAACAGAA 58.928 43.478 0.00 0.00 0.00 3.02
228 229 4.518970 GCTCTAAACATCCACCAACAGAAA 59.481 41.667 0.00 0.00 0.00 2.52
229 230 5.335191 GCTCTAAACATCCACCAACAGAAAG 60.335 44.000 0.00 0.00 0.00 2.62
230 231 5.935945 TCTAAACATCCACCAACAGAAAGA 58.064 37.500 0.00 0.00 0.00 2.52
231 232 4.918810 AAACATCCACCAACAGAAAGAC 57.081 40.909 0.00 0.00 0.00 3.01
232 233 2.863809 ACATCCACCAACAGAAAGACC 58.136 47.619 0.00 0.00 0.00 3.85
233 234 2.443255 ACATCCACCAACAGAAAGACCT 59.557 45.455 0.00 0.00 0.00 3.85
234 235 3.117512 ACATCCACCAACAGAAAGACCTT 60.118 43.478 0.00 0.00 0.00 3.50
235 236 4.104102 ACATCCACCAACAGAAAGACCTTA 59.896 41.667 0.00 0.00 0.00 2.69
236 237 4.781775 TCCACCAACAGAAAGACCTTAA 57.218 40.909 0.00 0.00 0.00 1.85
237 238 5.118729 TCCACCAACAGAAAGACCTTAAA 57.881 39.130 0.00 0.00 0.00 1.52
238 239 5.701224 TCCACCAACAGAAAGACCTTAAAT 58.299 37.500 0.00 0.00 0.00 1.40
239 240 6.133356 TCCACCAACAGAAAGACCTTAAATT 58.867 36.000 0.00 0.00 0.00 1.82
240 241 6.609616 TCCACCAACAGAAAGACCTTAAATTT 59.390 34.615 0.00 0.00 0.00 1.82
241 242 6.701400 CCACCAACAGAAAGACCTTAAATTTG 59.299 38.462 0.00 0.00 0.00 2.32
242 243 6.200854 CACCAACAGAAAGACCTTAAATTTGC 59.799 38.462 0.00 0.00 0.00 3.68
243 244 6.098266 ACCAACAGAAAGACCTTAAATTTGCT 59.902 34.615 0.00 0.00 0.00 3.91
244 245 6.986231 CCAACAGAAAGACCTTAAATTTGCTT 59.014 34.615 0.00 0.00 0.00 3.91
245 246 7.042523 CCAACAGAAAGACCTTAAATTTGCTTG 60.043 37.037 0.00 0.00 0.00 4.01
246 247 7.346751 ACAGAAAGACCTTAAATTTGCTTGA 57.653 32.000 0.00 0.00 0.00 3.02
247 248 7.955918 ACAGAAAGACCTTAAATTTGCTTGAT 58.044 30.769 0.00 0.00 0.00 2.57
248 249 9.077885 ACAGAAAGACCTTAAATTTGCTTGATA 57.922 29.630 0.00 0.00 0.00 2.15
274 275 9.822185 ATTTTTACATTTCTTCTTTTCAGCAGT 57.178 25.926 0.00 0.00 0.00 4.40
275 276 8.633075 TTTTACATTTCTTCTTTTCAGCAGTG 57.367 30.769 0.00 0.00 0.00 3.66
276 277 5.841957 ACATTTCTTCTTTTCAGCAGTGT 57.158 34.783 0.00 0.00 0.00 3.55
277 278 5.585390 ACATTTCTTCTTTTCAGCAGTGTG 58.415 37.500 0.00 0.00 0.00 3.82
278 279 3.698029 TTCTTCTTTTCAGCAGTGTGC 57.302 42.857 0.00 0.00 45.46 4.57
288 289 1.785321 GCAGTGTGCATGCAATTGC 59.215 52.632 24.58 25.70 44.26 3.56
289 290 0.669318 GCAGTGTGCATGCAATTGCT 60.669 50.000 29.97 20.31 44.26 3.91
290 291 1.790755 CAGTGTGCATGCAATTGCTT 58.209 45.000 29.37 21.33 43.18 3.91
291 292 1.459209 CAGTGTGCATGCAATTGCTTG 59.541 47.619 31.52 31.52 45.55 4.01
304 305 4.714851 CAATTGCTTGCTTTTACATTGCC 58.285 39.130 0.00 0.00 0.00 4.52
305 306 3.465742 TTGCTTGCTTTTACATTGCCA 57.534 38.095 0.00 0.00 0.00 4.92
306 307 3.681593 TGCTTGCTTTTACATTGCCAT 57.318 38.095 0.00 0.00 0.00 4.40
307 308 4.797800 TGCTTGCTTTTACATTGCCATA 57.202 36.364 0.00 0.00 0.00 2.74
308 309 4.493547 TGCTTGCTTTTACATTGCCATAC 58.506 39.130 0.00 0.00 0.00 2.39
309 310 3.547468 GCTTGCTTTTACATTGCCATACG 59.453 43.478 0.00 0.00 0.00 3.06
310 311 3.143807 TGCTTTTACATTGCCATACGC 57.856 42.857 0.00 0.00 38.31 4.42
311 312 2.108700 GCTTTTACATTGCCATACGCG 58.891 47.619 3.53 3.53 42.08 6.01
312 313 2.477189 GCTTTTACATTGCCATACGCGT 60.477 45.455 19.17 19.17 42.08 6.01
313 314 3.242478 GCTTTTACATTGCCATACGCGTA 60.242 43.478 22.94 22.94 42.08 4.42
314 315 3.929417 TTTACATTGCCATACGCGTAC 57.071 42.857 23.19 9.89 42.08 3.67
315 316 2.580966 TACATTGCCATACGCGTACA 57.419 45.000 23.19 12.70 42.08 2.90
316 317 1.003851 ACATTGCCATACGCGTACAC 58.996 50.000 23.19 14.18 42.08 2.90
317 318 0.303493 CATTGCCATACGCGTACACC 59.697 55.000 23.19 12.60 42.08 4.16
318 319 0.177141 ATTGCCATACGCGTACACCT 59.823 50.000 23.19 1.99 42.08 4.00
319 320 0.816373 TTGCCATACGCGTACACCTA 59.184 50.000 23.19 0.00 42.08 3.08
320 321 0.101040 TGCCATACGCGTACACCTAC 59.899 55.000 23.19 8.70 42.08 3.18
328 329 3.025866 CGTACACCTACGCTGGTTC 57.974 57.895 0.00 0.00 39.43 3.62
329 330 0.241749 CGTACACCTACGCTGGTTCA 59.758 55.000 0.00 0.00 39.43 3.18
330 331 1.135199 CGTACACCTACGCTGGTTCAT 60.135 52.381 0.00 0.00 39.43 2.57
331 332 2.673043 CGTACACCTACGCTGGTTCATT 60.673 50.000 0.00 0.00 39.43 2.57
332 333 2.094762 ACACCTACGCTGGTTCATTC 57.905 50.000 0.00 0.00 38.45 2.67
333 334 1.346395 ACACCTACGCTGGTTCATTCA 59.654 47.619 0.00 0.00 38.45 2.57
334 335 2.002586 CACCTACGCTGGTTCATTCAG 58.997 52.381 0.00 0.00 38.45 3.02
344 345 5.892160 CTGGTTCATTCAGCATATATGGG 57.108 43.478 14.51 0.00 0.00 4.00
345 346 4.081406 TGGTTCATTCAGCATATATGGGC 58.919 43.478 14.51 0.88 0.00 5.36
346 347 4.081406 GGTTCATTCAGCATATATGGGCA 58.919 43.478 14.51 0.00 0.00 5.36
347 348 4.523943 GGTTCATTCAGCATATATGGGCAA 59.476 41.667 14.51 0.00 0.00 4.52
348 349 5.464168 GTTCATTCAGCATATATGGGCAAC 58.536 41.667 14.51 0.00 0.00 4.17
349 350 4.727677 TCATTCAGCATATATGGGCAACA 58.272 39.130 14.51 0.00 39.74 3.33
350 351 5.326900 TCATTCAGCATATATGGGCAACAT 58.673 37.500 14.51 0.00 43.68 2.71
351 352 5.184287 TCATTCAGCATATATGGGCAACATG 59.816 40.000 14.51 0.00 40.82 3.21
352 353 4.103013 TCAGCATATATGGGCAACATGT 57.897 40.909 14.51 0.00 40.82 3.21
421 426 1.236616 TTTCACATGTGCTCAGCCCG 61.237 55.000 21.38 0.00 0.00 6.13
426 431 3.333899 ATGTGCTCAGCCCGCATGA 62.334 57.895 0.00 0.00 39.89 3.07
428 433 2.515290 TGCTCAGCCCGCATGATG 60.515 61.111 0.00 0.00 31.40 3.07
444 449 2.881074 TGATGTGCTCTCTTTCGTAGC 58.119 47.619 0.00 0.00 36.77 3.58
445 450 2.231235 TGATGTGCTCTCTTTCGTAGCA 59.769 45.455 0.00 0.00 43.66 3.49
446 451 2.812358 TGTGCTCTCTTTCGTAGCAA 57.188 45.000 0.00 0.00 47.00 3.91
447 452 2.404215 TGTGCTCTCTTTCGTAGCAAC 58.596 47.619 0.00 0.00 47.00 4.17
475 496 9.109393 TGGTTTCAACTTGCTAATATCATACTC 57.891 33.333 0.00 0.00 0.00 2.59
500 521 9.956640 TCTACTTAGGTGTATATCTAGGTAAGC 57.043 37.037 3.83 0.00 33.33 3.09
504 525 8.786710 TTAGGTGTATATCTAGGTAAGCCAAA 57.213 34.615 0.00 0.00 37.19 3.28
601 626 5.470098 GTGGATCTAGAGAAAGCAAACACAA 59.530 40.000 0.00 0.00 0.00 3.33
602 627 6.150140 GTGGATCTAGAGAAAGCAAACACAAT 59.850 38.462 0.00 0.00 0.00 2.71
715 749 3.986277 TCAGACAAGGTAGTTTTCGGAC 58.014 45.455 0.00 0.00 0.00 4.79
723 757 3.260128 AGGTAGTTTTCGGACTTACTGGG 59.740 47.826 0.00 0.00 0.00 4.45
738 772 3.237268 ACTGGGGATGCTTTTACACAA 57.763 42.857 0.00 0.00 0.00 3.33
757 791 5.949952 ACACAACTTTTAGGTTCCTTGTCTT 59.050 36.000 0.00 0.00 0.00 3.01
797 859 4.421479 ACCAACGGCGAGAGAGCG 62.421 66.667 16.62 0.00 38.18 5.03
798 860 4.116328 CCAACGGCGAGAGAGCGA 62.116 66.667 16.62 0.00 38.18 4.93
903 972 2.228343 GCATGCTCTCCTCCATTATTGC 59.772 50.000 11.37 0.00 0.00 3.56
945 1017 2.074576 CCACAGATCTGTCAGTGCTTG 58.925 52.381 25.58 11.58 42.83 4.01
1234 1338 3.129502 CCTACGAGGCCGACGACA 61.130 66.667 26.51 14.96 39.50 4.35
1298 1402 1.201429 ATCGGCAAGTCCACTTCCCT 61.201 55.000 0.00 0.00 31.53 4.20
1401 1505 8.709386 TTGAGAAGATCAATAAGCTAGTCAAC 57.291 34.615 0.00 0.00 43.09 3.18
1471 1575 1.302832 CTTCCTTGGCGGCAGACTT 60.303 57.895 12.87 0.00 0.00 3.01
1644 1748 6.723298 AAGATGGTGTACAATGACCAAAAA 57.277 33.333 6.99 0.00 45.36 1.94
1858 2004 5.890985 TGGAATGAAGAAAAGAAGTTGTGGA 59.109 36.000 0.00 0.00 0.00 4.02
1987 2133 4.424626 CGTTGAGCTAGCATTTCTGAGTA 58.575 43.478 18.83 0.00 0.00 2.59
2207 2355 5.047092 GGGATAATGTTGGAGGCAAATATGG 60.047 44.000 0.00 0.00 0.00 2.74
2385 2533 6.840780 ACAATGGATTTAACTCAGAAAGGG 57.159 37.500 0.00 0.00 0.00 3.95
2394 2542 9.408648 GATTTAACTCAGAAAGGGGAATTCATA 57.591 33.333 7.93 0.00 0.00 2.15
2469 2632 2.323599 TCTGCTGGCTATGCTAGTGAT 58.676 47.619 4.95 0.00 39.36 3.06
2471 2634 3.509184 TCTGCTGGCTATGCTAGTGATAG 59.491 47.826 4.95 6.57 39.36 2.08
2741 2962 1.462616 TTACGAGCATTGCATTGGCT 58.537 45.000 11.91 8.67 41.91 4.75
2751 2975 0.991146 TGCATTGGCTGGGTTCTAGA 59.009 50.000 0.00 0.00 41.91 2.43
2803 3027 1.254954 ACGGTACCTTGACCTCTCAC 58.745 55.000 10.90 0.00 37.34 3.51
2836 3060 6.292542 CGTCAATTCTACATTGCTCGATTCAT 60.293 38.462 0.00 0.00 32.56 2.57
2842 3066 8.437360 TTCTACATTGCTCGATTCATTATGTT 57.563 30.769 9.14 0.00 0.00 2.71
2875 3099 4.202284 ACATGCAAACTTTGAGGCTCAATT 60.202 37.500 28.98 18.88 36.11 2.32
3190 3415 3.020984 GAGTTGTTGTTCTGTTGGGGAA 58.979 45.455 0.00 0.00 0.00 3.97
3191 3416 3.023832 AGTTGTTGTTCTGTTGGGGAAG 58.976 45.455 0.00 0.00 0.00 3.46
3196 3421 2.930950 TGTTCTGTTGGGGAAGAAGTG 58.069 47.619 0.00 0.00 33.21 3.16
3202 3427 2.777692 TGTTGGGGAAGAAGTGTTCTCT 59.222 45.455 0.00 0.00 39.61 3.10
3205 3430 1.349357 GGGGAAGAAGTGTTCTCTGCT 59.651 52.381 0.00 0.00 39.61 4.24
3206 3431 2.614229 GGGGAAGAAGTGTTCTCTGCTC 60.614 54.545 0.00 0.00 39.61 4.26
3208 3433 2.288518 GGAAGAAGTGTTCTCTGCTCGT 60.289 50.000 0.00 0.00 39.61 4.18
3211 3436 3.413327 AGAAGTGTTCTCTGCTCGTCTA 58.587 45.455 0.00 0.00 34.07 2.59
3212 3437 3.438781 AGAAGTGTTCTCTGCTCGTCTAG 59.561 47.826 0.00 0.00 34.07 2.43
3213 3438 3.060736 AGTGTTCTCTGCTCGTCTAGA 57.939 47.619 0.00 0.00 0.00 2.43
3214 3439 2.745281 AGTGTTCTCTGCTCGTCTAGAC 59.255 50.000 13.18 13.18 0.00 2.59
3215 3440 2.484651 GTGTTCTCTGCTCGTCTAGACA 59.515 50.000 22.37 8.93 0.00 3.41
3216 3441 2.744741 TGTTCTCTGCTCGTCTAGACAG 59.255 50.000 22.37 17.82 32.78 3.51
3217 3442 2.031258 TCTCTGCTCGTCTAGACAGG 57.969 55.000 22.37 14.32 32.55 4.00
3218 3443 1.555533 TCTCTGCTCGTCTAGACAGGA 59.444 52.381 22.37 17.02 32.55 3.86
3219 3444 2.027100 TCTCTGCTCGTCTAGACAGGAA 60.027 50.000 22.37 7.97 32.55 3.36
3280 3505 6.518032 GCATCTAGAACCTCATAGCAAGATCA 60.518 42.308 0.00 0.00 0.00 2.92
3448 3673 4.879545 TGGAGTTCTTACACTTGAACAACC 59.120 41.667 8.28 10.30 43.38 3.77
3625 3850 3.039011 AGCTCAGTAATATTCCCGGTGT 58.961 45.455 0.00 0.00 0.00 4.16
3644 3869 5.062308 CGGTGTTTGAGAAGCTAGTAATCAC 59.938 44.000 0.00 0.00 0.00 3.06
3728 3977 5.152934 GGGATATTACTTGGAGGTGGAGTA 58.847 45.833 0.00 0.00 0.00 2.59
3789 4061 3.745799 TCAATGCTTCGAAGGTTTGGTA 58.254 40.909 25.77 0.00 0.00 3.25
3859 4131 3.682766 CATAGCTGCAGGAGTCTGG 57.317 57.895 17.12 0.00 41.19 3.86
3886 4158 1.303074 CCTGATGGGATGGATGGCG 60.303 63.158 0.00 0.00 37.23 5.69
3897 4169 0.532573 TGGATGGCGTCACTTCTCTC 59.467 55.000 9.27 0.00 0.00 3.20
3908 4180 1.684049 CTTCTCTCCGGGAGCTGGT 60.684 63.158 19.48 0.00 41.60 4.00
3923 4195 3.525537 AGCTGGTAATCACTCATTGTCG 58.474 45.455 0.00 0.00 0.00 4.35
3976 4262 2.116125 GGTTGCCAGCCCTTGACT 59.884 61.111 0.00 0.00 0.00 3.41
3978 4264 0.960861 GGTTGCCAGCCCTTGACTAC 60.961 60.000 0.00 0.00 0.00 2.73
3981 4267 0.252513 TGCCAGCCCTTGACTACCTA 60.253 55.000 0.00 0.00 0.00 3.08
3982 4268 0.909623 GCCAGCCCTTGACTACCTAA 59.090 55.000 0.00 0.00 0.00 2.69
3983 4269 1.407025 GCCAGCCCTTGACTACCTAAC 60.407 57.143 0.00 0.00 0.00 2.34
4155 4591 1.053835 TCCCCTGCTGTGTTCACTCA 61.054 55.000 4.59 2.37 0.00 3.41
4254 4725 9.909644 ATTATCGTTCCTCAGTACATGTAATAC 57.090 33.333 7.25 0.00 0.00 1.89
4571 6083 3.926527 TCAGCACAATACTTGAACTAGCG 59.073 43.478 0.00 0.00 0.00 4.26
4639 6205 4.099113 TGACAAAATGCTTTCACCATCACA 59.901 37.500 0.00 0.00 0.00 3.58
4671 6240 7.342026 TGGTTAGCAGACTAGATACTGATTTCA 59.658 37.037 15.96 8.84 36.38 2.69
4677 6246 7.381948 GCAGACTAGATACTGATTTCATGTCTG 59.618 40.741 15.96 0.00 41.70 3.51
4692 6261 2.771089 TGTCTGTCAGGAATCAAGTGC 58.229 47.619 0.00 0.00 0.00 4.40
4717 6286 1.206849 TGATAGTCATCTGCAACGCCA 59.793 47.619 0.00 0.00 31.93 5.69
4844 6415 7.565029 TCAGATACCACCTTTTGATGATAGAGA 59.435 37.037 0.00 0.00 0.00 3.10
4853 6424 6.985645 CCTTTTGATGATAGAGAGTCAGGAAG 59.014 42.308 0.00 0.00 0.00 3.46
4913 6491 5.104109 CCCTGGTAAATCTCCCTACAAATCA 60.104 44.000 0.00 0.00 0.00 2.57
4982 6565 3.628942 TGATCAATCAATGTACCTGCAGC 59.371 43.478 8.66 0.00 33.08 5.25
4983 6566 2.368439 TCAATCAATGTACCTGCAGCC 58.632 47.619 8.66 0.00 0.00 4.85
4984 6567 2.025981 TCAATCAATGTACCTGCAGCCT 60.026 45.455 8.66 0.00 0.00 4.58
4985 6568 2.048444 ATCAATGTACCTGCAGCCTG 57.952 50.000 8.66 0.00 0.00 4.85
4986 6569 0.677731 TCAATGTACCTGCAGCCTGC 60.678 55.000 10.45 10.45 45.29 4.85
5064 6647 4.090761 AGCAAAGTCAGAACTCCATCAA 57.909 40.909 0.00 0.00 33.48 2.57
5070 6653 1.691976 TCAGAACTCCATCAACACGGT 59.308 47.619 0.00 0.00 0.00 4.83
5112 6695 5.183713 TGAAAGTAGATGCAACAATGGGAAG 59.816 40.000 0.00 0.00 0.00 3.46
5113 6696 4.307032 AGTAGATGCAACAATGGGAAGT 57.693 40.909 0.00 0.00 0.00 3.01
5114 6697 4.012374 AGTAGATGCAACAATGGGAAGTG 58.988 43.478 0.00 0.00 0.00 3.16
5115 6698 2.173519 AGATGCAACAATGGGAAGTGG 58.826 47.619 0.00 0.00 0.00 4.00
5163 6751 4.517453 TGTTCCCTACAAATTTTCTCCACG 59.483 41.667 0.00 0.00 32.64 4.94
5164 6752 4.360951 TCCCTACAAATTTTCTCCACGT 57.639 40.909 0.00 0.00 0.00 4.49
5174 6762 0.179094 TTCTCCACGTGTGTGTGTCC 60.179 55.000 15.65 0.00 44.92 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 9.970395 CCAATCATTATATTTTCTGCAGCTTAA 57.030 29.630 9.47 3.07 0.00 1.85
5 6 8.015185 ACCAATCATTATATTTTCTGCAGCTT 57.985 30.769 9.47 0.00 0.00 3.74
7 8 9.185192 GTAACCAATCATTATATTTTCTGCAGC 57.815 33.333 9.47 0.00 0.00 5.25
8 9 9.683069 GGTAACCAATCATTATATTTTCTGCAG 57.317 33.333 7.63 7.63 0.00 4.41
29 30 6.316390 CCTCTTCAGTGTATCAAATGGGTAAC 59.684 42.308 0.00 0.00 0.00 2.50
30 31 6.214615 TCCTCTTCAGTGTATCAAATGGGTAA 59.785 38.462 0.00 0.00 0.00 2.85
31 32 5.724370 TCCTCTTCAGTGTATCAAATGGGTA 59.276 40.000 0.00 0.00 0.00 3.69
32 33 4.536090 TCCTCTTCAGTGTATCAAATGGGT 59.464 41.667 0.00 0.00 0.00 4.51
33 34 5.102953 TCCTCTTCAGTGTATCAAATGGG 57.897 43.478 0.00 0.00 0.00 4.00
34 35 7.175641 AGTTTTCCTCTTCAGTGTATCAAATGG 59.824 37.037 0.00 0.00 0.00 3.16
35 36 8.019669 CAGTTTTCCTCTTCAGTGTATCAAATG 58.980 37.037 0.00 0.00 0.00 2.32
36 37 7.939039 TCAGTTTTCCTCTTCAGTGTATCAAAT 59.061 33.333 0.00 0.00 0.00 2.32
37 38 7.279615 TCAGTTTTCCTCTTCAGTGTATCAAA 58.720 34.615 0.00 0.00 0.00 2.69
38 39 6.826668 TCAGTTTTCCTCTTCAGTGTATCAA 58.173 36.000 0.00 0.00 0.00 2.57
39 40 6.419484 TCAGTTTTCCTCTTCAGTGTATCA 57.581 37.500 0.00 0.00 0.00 2.15
40 41 7.730364 TTTCAGTTTTCCTCTTCAGTGTATC 57.270 36.000 0.00 0.00 0.00 2.24
41 42 8.406297 GTTTTTCAGTTTTCCTCTTCAGTGTAT 58.594 33.333 0.00 0.00 0.00 2.29
42 43 7.610305 AGTTTTTCAGTTTTCCTCTTCAGTGTA 59.390 33.333 0.00 0.00 0.00 2.90
43 44 6.434340 AGTTTTTCAGTTTTCCTCTTCAGTGT 59.566 34.615 0.00 0.00 0.00 3.55
44 45 6.856895 AGTTTTTCAGTTTTCCTCTTCAGTG 58.143 36.000 0.00 0.00 0.00 3.66
45 46 8.753497 ATAGTTTTTCAGTTTTCCTCTTCAGT 57.247 30.769 0.00 0.00 0.00 3.41
64 65 8.817876 GCTCCTAGTGGGAATATTCTATAGTTT 58.182 37.037 14.95 0.00 44.58 2.66
65 66 7.956315 TGCTCCTAGTGGGAATATTCTATAGTT 59.044 37.037 14.95 0.40 44.58 2.24
66 67 7.479579 TGCTCCTAGTGGGAATATTCTATAGT 58.520 38.462 14.95 7.36 44.58 2.12
67 68 7.962995 TGCTCCTAGTGGGAATATTCTATAG 57.037 40.000 14.95 11.02 44.58 1.31
68 69 7.147655 GCATGCTCCTAGTGGGAATATTCTATA 60.148 40.741 11.37 0.00 44.58 1.31
69 70 6.352565 GCATGCTCCTAGTGGGAATATTCTAT 60.353 42.308 11.37 2.23 44.58 1.98
70 71 5.046304 GCATGCTCCTAGTGGGAATATTCTA 60.046 44.000 11.37 2.51 44.58 2.10
71 72 4.263243 GCATGCTCCTAGTGGGAATATTCT 60.263 45.833 11.37 0.00 44.58 2.40
72 73 4.006319 GCATGCTCCTAGTGGGAATATTC 58.994 47.826 11.37 6.93 44.58 1.75
73 74 3.654806 AGCATGCTCCTAGTGGGAATATT 59.345 43.478 16.30 0.00 44.58 1.28
74 75 3.254960 AGCATGCTCCTAGTGGGAATAT 58.745 45.455 16.30 0.00 44.58 1.28
75 76 2.694397 AGCATGCTCCTAGTGGGAATA 58.306 47.619 16.30 0.00 44.58 1.75
76 77 1.516110 AGCATGCTCCTAGTGGGAAT 58.484 50.000 16.30 0.00 44.58 3.01
77 78 2.174685 TAGCATGCTCCTAGTGGGAA 57.825 50.000 26.57 0.00 44.58 3.97
78 79 2.174685 TTAGCATGCTCCTAGTGGGA 57.825 50.000 26.57 0.00 42.77 4.37
79 80 3.498774 ATTTAGCATGCTCCTAGTGGG 57.501 47.619 26.57 0.00 0.00 4.61
80 81 4.024556 CGAAATTTAGCATGCTCCTAGTGG 60.025 45.833 26.57 6.61 0.00 4.00
81 82 4.811024 TCGAAATTTAGCATGCTCCTAGTG 59.189 41.667 26.57 10.24 0.00 2.74
82 83 5.023533 TCGAAATTTAGCATGCTCCTAGT 57.976 39.130 26.57 8.24 0.00 2.57
83 84 5.755375 TCTTCGAAATTTAGCATGCTCCTAG 59.245 40.000 26.57 10.48 0.00 3.02
84 85 5.670485 TCTTCGAAATTTAGCATGCTCCTA 58.330 37.500 26.57 11.21 0.00 2.94
85 86 4.517285 TCTTCGAAATTTAGCATGCTCCT 58.483 39.130 26.57 7.15 0.00 3.69
86 87 4.882671 TCTTCGAAATTTAGCATGCTCC 57.117 40.909 26.57 6.76 0.00 4.70
87 88 6.052840 TGATCTTCGAAATTTAGCATGCTC 57.947 37.500 26.57 7.99 0.00 4.26
88 89 6.127925 TGTTGATCTTCGAAATTTAGCATGCT 60.128 34.615 25.99 25.99 0.00 3.79
89 90 6.029607 TGTTGATCTTCGAAATTTAGCATGC 58.970 36.000 10.51 10.51 0.00 4.06
90 91 8.624701 AATGTTGATCTTCGAAATTTAGCATG 57.375 30.769 0.00 0.00 0.00 4.06
97 98 9.613428 TCCACTATAATGTTGATCTTCGAAATT 57.387 29.630 0.00 0.00 0.00 1.82
98 99 9.613428 TTCCACTATAATGTTGATCTTCGAAAT 57.387 29.630 0.00 0.00 0.00 2.17
99 100 9.613428 ATTCCACTATAATGTTGATCTTCGAAA 57.387 29.630 0.00 0.00 0.00 3.46
100 101 9.261180 GATTCCACTATAATGTTGATCTTCGAA 57.739 33.333 0.00 0.00 0.00 3.71
101 102 8.642432 AGATTCCACTATAATGTTGATCTTCGA 58.358 33.333 0.00 0.00 0.00 3.71
102 103 8.706936 CAGATTCCACTATAATGTTGATCTTCG 58.293 37.037 0.00 0.00 0.00 3.79
103 104 8.997323 CCAGATTCCACTATAATGTTGATCTTC 58.003 37.037 0.00 0.00 0.00 2.87
104 105 8.497745 ACCAGATTCCACTATAATGTTGATCTT 58.502 33.333 0.00 0.00 0.00 2.40
105 106 8.038862 ACCAGATTCCACTATAATGTTGATCT 57.961 34.615 0.00 0.00 0.00 2.75
106 107 8.682936 AACCAGATTCCACTATAATGTTGATC 57.317 34.615 0.00 0.00 0.00 2.92
107 108 9.784531 CTAACCAGATTCCACTATAATGTTGAT 57.215 33.333 0.00 0.00 0.00 2.57
108 109 7.715249 GCTAACCAGATTCCACTATAATGTTGA 59.285 37.037 0.00 0.00 0.00 3.18
109 110 7.041098 GGCTAACCAGATTCCACTATAATGTTG 60.041 40.741 0.00 0.00 35.26 3.33
110 111 6.998673 GGCTAACCAGATTCCACTATAATGTT 59.001 38.462 0.00 0.00 35.26 2.71
111 112 6.101150 TGGCTAACCAGATTCCACTATAATGT 59.899 38.462 0.00 0.00 42.67 2.71
112 113 6.533730 TGGCTAACCAGATTCCACTATAATG 58.466 40.000 0.00 0.00 42.67 1.90
113 114 6.763715 TGGCTAACCAGATTCCACTATAAT 57.236 37.500 0.00 0.00 42.67 1.28
128 129 3.568430 AGCTACAGTGTTTTTGGCTAACC 59.432 43.478 0.00 0.00 0.00 2.85
129 130 4.830826 AGCTACAGTGTTTTTGGCTAAC 57.169 40.909 0.00 0.00 0.00 2.34
130 131 4.454504 GCTAGCTACAGTGTTTTTGGCTAA 59.545 41.667 7.70 0.00 31.81 3.09
131 132 4.000988 GCTAGCTACAGTGTTTTTGGCTA 58.999 43.478 7.70 7.58 0.00 3.93
132 133 2.814336 GCTAGCTACAGTGTTTTTGGCT 59.186 45.455 7.70 6.83 0.00 4.75
133 134 2.552315 TGCTAGCTACAGTGTTTTTGGC 59.448 45.455 17.23 1.59 0.00 4.52
134 135 3.815401 AGTGCTAGCTACAGTGTTTTTGG 59.185 43.478 17.23 0.00 0.00 3.28
135 136 6.158175 CTAGTGCTAGCTACAGTGTTTTTG 57.842 41.667 17.23 0.00 0.00 2.44
149 150 2.941453 TCAGTTTCGGCTAGTGCTAG 57.059 50.000 2.04 2.04 39.59 3.42
150 151 3.887621 ATTCAGTTTCGGCTAGTGCTA 57.112 42.857 0.00 0.00 39.59 3.49
151 152 2.770164 ATTCAGTTTCGGCTAGTGCT 57.230 45.000 0.00 0.00 39.59 4.40
152 153 3.492313 CAAATTCAGTTTCGGCTAGTGC 58.508 45.455 0.00 0.00 38.76 4.40
153 154 3.119849 CCCAAATTCAGTTTCGGCTAGTG 60.120 47.826 0.00 0.00 0.00 2.74
154 155 3.081804 CCCAAATTCAGTTTCGGCTAGT 58.918 45.455 0.00 0.00 0.00 2.57
155 156 3.081804 ACCCAAATTCAGTTTCGGCTAG 58.918 45.455 0.00 0.00 31.91 3.42
156 157 3.149005 ACCCAAATTCAGTTTCGGCTA 57.851 42.857 0.00 0.00 31.91 3.93
157 158 1.995376 ACCCAAATTCAGTTTCGGCT 58.005 45.000 0.00 0.00 31.91 5.52
158 159 2.817844 ACTACCCAAATTCAGTTTCGGC 59.182 45.455 0.00 0.00 31.91 5.54
159 160 5.470777 TGTTACTACCCAAATTCAGTTTCGG 59.529 40.000 0.00 0.00 34.58 4.30
160 161 6.548441 TGTTACTACCCAAATTCAGTTTCG 57.452 37.500 0.00 0.00 0.00 3.46
161 162 7.650504 GGTTTGTTACTACCCAAATTCAGTTTC 59.349 37.037 0.00 0.00 33.53 2.78
162 163 7.124448 TGGTTTGTTACTACCCAAATTCAGTTT 59.876 33.333 5.14 0.00 33.53 2.66
163 164 6.608002 TGGTTTGTTACTACCCAAATTCAGTT 59.392 34.615 5.14 0.00 33.53 3.16
164 165 6.040054 GTGGTTTGTTACTACCCAAATTCAGT 59.960 38.462 5.14 0.00 33.53 3.41
165 166 6.264518 AGTGGTTTGTTACTACCCAAATTCAG 59.735 38.462 5.14 0.00 38.90 3.02
166 167 6.130569 AGTGGTTTGTTACTACCCAAATTCA 58.869 36.000 5.14 0.00 38.90 2.57
167 168 6.644248 AGTGGTTTGTTACTACCCAAATTC 57.356 37.500 5.14 0.00 38.90 2.17
168 169 7.292319 ACTAGTGGTTTGTTACTACCCAAATT 58.708 34.615 0.00 0.00 38.90 1.82
169 170 6.844829 ACTAGTGGTTTGTTACTACCCAAAT 58.155 36.000 0.00 0.00 38.90 2.32
170 171 6.100134 AGACTAGTGGTTTGTTACTACCCAAA 59.900 38.462 0.00 0.00 38.90 3.28
171 172 5.603813 AGACTAGTGGTTTGTTACTACCCAA 59.396 40.000 0.00 0.00 38.90 4.12
172 173 5.011329 CAGACTAGTGGTTTGTTACTACCCA 59.989 44.000 0.00 0.00 38.90 4.51
173 174 5.476614 CAGACTAGTGGTTTGTTACTACCC 58.523 45.833 0.00 0.00 38.90 3.69
174 175 4.928020 GCAGACTAGTGGTTTGTTACTACC 59.072 45.833 0.00 1.31 38.90 3.18
175 176 4.620184 CGCAGACTAGTGGTTTGTTACTAC 59.380 45.833 0.00 0.00 38.43 2.73
176 177 4.321452 CCGCAGACTAGTGGTTTGTTACTA 60.321 45.833 0.00 0.00 33.23 1.82
177 178 3.554337 CCGCAGACTAGTGGTTTGTTACT 60.554 47.826 0.00 0.00 33.23 2.24
178 179 2.735134 CCGCAGACTAGTGGTTTGTTAC 59.265 50.000 0.00 0.00 33.23 2.50
179 180 2.868839 GCCGCAGACTAGTGGTTTGTTA 60.869 50.000 0.00 0.00 41.26 2.41
180 181 1.878953 CCGCAGACTAGTGGTTTGTT 58.121 50.000 0.00 0.00 33.23 2.83
181 182 0.602905 GCCGCAGACTAGTGGTTTGT 60.603 55.000 0.00 0.00 41.26 2.83
182 183 0.320771 AGCCGCAGACTAGTGGTTTG 60.321 55.000 0.00 0.00 41.26 2.93
183 184 0.320771 CAGCCGCAGACTAGTGGTTT 60.321 55.000 0.00 0.00 41.26 3.27
184 185 1.185618 TCAGCCGCAGACTAGTGGTT 61.186 55.000 0.00 0.00 41.26 3.67
185 186 0.972983 ATCAGCCGCAGACTAGTGGT 60.973 55.000 0.00 0.00 41.26 4.16
186 187 0.529337 CATCAGCCGCAGACTAGTGG 60.529 60.000 0.00 0.00 42.11 4.00
187 188 1.150567 GCATCAGCCGCAGACTAGTG 61.151 60.000 0.00 0.00 33.58 2.74
188 189 1.142748 GCATCAGCCGCAGACTAGT 59.857 57.895 0.00 0.00 33.58 2.57
189 190 0.597118 GAGCATCAGCCGCAGACTAG 60.597 60.000 0.00 0.00 43.56 2.57
190 191 1.039785 AGAGCATCAGCCGCAGACTA 61.040 55.000 0.00 0.00 43.56 2.59
191 192 1.039785 TAGAGCATCAGCCGCAGACT 61.040 55.000 0.00 0.00 43.56 3.24
192 193 0.179100 TTAGAGCATCAGCCGCAGAC 60.179 55.000 0.00 0.00 43.56 3.51
193 194 0.536724 TTTAGAGCATCAGCCGCAGA 59.463 50.000 0.00 0.00 43.56 4.26
194 195 0.654683 GTTTAGAGCATCAGCCGCAG 59.345 55.000 0.00 0.00 43.56 5.18
195 196 0.036483 TGTTTAGAGCATCAGCCGCA 60.036 50.000 0.00 0.00 43.56 5.69
196 197 1.262683 GATGTTTAGAGCATCAGCCGC 59.737 52.381 0.00 0.00 43.56 6.53
197 198 1.869767 GGATGTTTAGAGCATCAGCCG 59.130 52.381 7.01 0.00 43.17 5.52
198 199 2.615912 GTGGATGTTTAGAGCATCAGCC 59.384 50.000 7.01 0.00 43.17 4.85
199 200 2.615912 GGTGGATGTTTAGAGCATCAGC 59.384 50.000 7.01 0.00 43.17 4.26
200 201 3.877559 TGGTGGATGTTTAGAGCATCAG 58.122 45.455 7.01 0.00 43.17 2.90
201 202 3.998913 TGGTGGATGTTTAGAGCATCA 57.001 42.857 7.01 0.00 43.17 3.07
202 203 4.009675 TGTTGGTGGATGTTTAGAGCATC 58.990 43.478 0.00 0.00 41.30 3.91
203 204 4.012374 CTGTTGGTGGATGTTTAGAGCAT 58.988 43.478 0.00 0.00 0.00 3.79
204 205 3.072330 TCTGTTGGTGGATGTTTAGAGCA 59.928 43.478 0.00 0.00 0.00 4.26
205 206 3.674997 TCTGTTGGTGGATGTTTAGAGC 58.325 45.455 0.00 0.00 0.00 4.09
206 207 5.997746 TCTTTCTGTTGGTGGATGTTTAGAG 59.002 40.000 0.00 0.00 0.00 2.43
207 208 5.763204 GTCTTTCTGTTGGTGGATGTTTAGA 59.237 40.000 0.00 0.00 0.00 2.10
208 209 5.048713 GGTCTTTCTGTTGGTGGATGTTTAG 60.049 44.000 0.00 0.00 0.00 1.85
209 210 4.825085 GGTCTTTCTGTTGGTGGATGTTTA 59.175 41.667 0.00 0.00 0.00 2.01
210 211 3.636764 GGTCTTTCTGTTGGTGGATGTTT 59.363 43.478 0.00 0.00 0.00 2.83
211 212 3.117512 AGGTCTTTCTGTTGGTGGATGTT 60.118 43.478 0.00 0.00 0.00 2.71
212 213 2.443255 AGGTCTTTCTGTTGGTGGATGT 59.557 45.455 0.00 0.00 0.00 3.06
213 214 3.146104 AGGTCTTTCTGTTGGTGGATG 57.854 47.619 0.00 0.00 0.00 3.51
214 215 3.884037 AAGGTCTTTCTGTTGGTGGAT 57.116 42.857 0.00 0.00 0.00 3.41
215 216 4.781775 TTAAGGTCTTTCTGTTGGTGGA 57.218 40.909 0.00 0.00 0.00 4.02
216 217 6.405278 AATTTAAGGTCTTTCTGTTGGTGG 57.595 37.500 0.00 0.00 0.00 4.61
217 218 6.200854 GCAAATTTAAGGTCTTTCTGTTGGTG 59.799 38.462 0.00 0.00 0.00 4.17
218 219 6.098266 AGCAAATTTAAGGTCTTTCTGTTGGT 59.902 34.615 0.00 0.00 0.00 3.67
219 220 6.515832 AGCAAATTTAAGGTCTTTCTGTTGG 58.484 36.000 0.00 0.00 0.00 3.77
220 221 7.706179 TCAAGCAAATTTAAGGTCTTTCTGTTG 59.294 33.333 0.00 0.00 0.00 3.33
221 222 7.781056 TCAAGCAAATTTAAGGTCTTTCTGTT 58.219 30.769 0.00 0.00 0.00 3.16
222 223 7.346751 TCAAGCAAATTTAAGGTCTTTCTGT 57.653 32.000 0.00 0.00 0.00 3.41
248 249 9.822185 ACTGCTGAAAAGAAGAAATGTAAAAAT 57.178 25.926 0.00 0.00 0.00 1.82
249 250 9.086336 CACTGCTGAAAAGAAGAAATGTAAAAA 57.914 29.630 0.00 0.00 0.00 1.94
250 251 8.250332 ACACTGCTGAAAAGAAGAAATGTAAAA 58.750 29.630 0.00 0.00 0.00 1.52
251 252 7.701924 CACACTGCTGAAAAGAAGAAATGTAAA 59.298 33.333 0.00 0.00 0.00 2.01
252 253 7.195646 CACACTGCTGAAAAGAAGAAATGTAA 58.804 34.615 0.00 0.00 0.00 2.41
253 254 6.728200 CACACTGCTGAAAAGAAGAAATGTA 58.272 36.000 0.00 0.00 0.00 2.29
254 255 5.585390 CACACTGCTGAAAAGAAGAAATGT 58.415 37.500 0.00 0.00 0.00 2.71
255 256 4.443394 GCACACTGCTGAAAAGAAGAAATG 59.557 41.667 0.00 0.00 40.96 2.32
256 257 4.098349 TGCACACTGCTGAAAAGAAGAAAT 59.902 37.500 0.00 0.00 45.31 2.17
257 258 3.443329 TGCACACTGCTGAAAAGAAGAAA 59.557 39.130 0.00 0.00 45.31 2.52
258 259 3.016031 TGCACACTGCTGAAAAGAAGAA 58.984 40.909 0.00 0.00 45.31 2.52
259 260 2.642427 TGCACACTGCTGAAAAGAAGA 58.358 42.857 0.00 0.00 45.31 2.87
260 261 3.305964 CATGCACACTGCTGAAAAGAAG 58.694 45.455 0.00 0.00 45.31 2.85
261 262 2.544277 GCATGCACACTGCTGAAAAGAA 60.544 45.455 14.21 0.00 45.31 2.52
262 263 1.001048 GCATGCACACTGCTGAAAAGA 60.001 47.619 14.21 0.00 45.31 2.52
263 264 1.269361 TGCATGCACACTGCTGAAAAG 60.269 47.619 18.46 0.00 45.31 2.27
264 265 0.745468 TGCATGCACACTGCTGAAAA 59.255 45.000 18.46 0.00 45.31 2.29
265 266 0.745468 TTGCATGCACACTGCTGAAA 59.255 45.000 22.58 0.00 45.31 2.69
266 267 0.963225 ATTGCATGCACACTGCTGAA 59.037 45.000 22.58 1.96 45.31 3.02
267 268 0.963225 AATTGCATGCACACTGCTGA 59.037 45.000 22.58 2.84 45.31 4.26
268 269 1.067693 CAATTGCATGCACACTGCTG 58.932 50.000 22.58 7.61 45.31 4.41
269 270 0.669318 GCAATTGCATGCACACTGCT 60.669 50.000 28.06 8.10 45.70 4.24
270 271 1.785321 GCAATTGCATGCACACTGC 59.215 52.632 25.36 23.54 45.70 4.40
282 283 4.213694 TGGCAATGTAAAAGCAAGCAATTG 59.786 37.500 0.00 0.00 0.00 2.32
283 284 4.387598 TGGCAATGTAAAAGCAAGCAATT 58.612 34.783 0.00 0.00 0.00 2.32
284 285 4.005487 TGGCAATGTAAAAGCAAGCAAT 57.995 36.364 0.00 0.00 0.00 3.56
285 286 3.465742 TGGCAATGTAAAAGCAAGCAA 57.534 38.095 0.00 0.00 0.00 3.91
286 287 3.681593 ATGGCAATGTAAAAGCAAGCA 57.318 38.095 0.00 0.00 0.00 3.91
287 288 3.547468 CGTATGGCAATGTAAAAGCAAGC 59.453 43.478 0.00 0.00 0.00 4.01
288 289 3.547468 GCGTATGGCAATGTAAAAGCAAG 59.453 43.478 0.00 0.00 42.87 4.01
289 290 3.506810 GCGTATGGCAATGTAAAAGCAA 58.493 40.909 0.00 0.00 42.87 3.91
290 291 2.477021 CGCGTATGGCAATGTAAAAGCA 60.477 45.455 0.00 0.00 43.84 3.91
291 292 2.108700 CGCGTATGGCAATGTAAAAGC 58.891 47.619 0.00 0.00 43.84 3.51
292 293 3.398954 ACGCGTATGGCAATGTAAAAG 57.601 42.857 11.67 0.00 43.84 2.27
293 294 3.683340 TGTACGCGTATGGCAATGTAAAA 59.317 39.130 23.56 0.00 43.84 1.52
294 295 3.062369 GTGTACGCGTATGGCAATGTAAA 59.938 43.478 23.56 0.00 43.84 2.01
295 296 2.604011 GTGTACGCGTATGGCAATGTAA 59.396 45.455 23.56 0.00 43.84 2.41
296 297 2.195096 GTGTACGCGTATGGCAATGTA 58.805 47.619 23.56 0.00 43.84 2.29
297 298 1.003851 GTGTACGCGTATGGCAATGT 58.996 50.000 23.56 0.00 43.84 2.71
298 299 0.303493 GGTGTACGCGTATGGCAATG 59.697 55.000 23.56 0.00 43.84 2.82
299 300 0.177141 AGGTGTACGCGTATGGCAAT 59.823 50.000 23.56 5.48 43.84 3.56
300 301 0.816373 TAGGTGTACGCGTATGGCAA 59.184 50.000 23.56 5.88 43.84 4.52
301 302 0.101040 GTAGGTGTACGCGTATGGCA 59.899 55.000 23.56 13.12 43.84 4.92
302 303 0.931662 CGTAGGTGTACGCGTATGGC 60.932 60.000 23.56 14.66 45.22 4.40
303 304 3.153364 CGTAGGTGTACGCGTATGG 57.847 57.895 23.56 3.26 45.22 2.74
315 316 1.676014 GCTGAATGAACCAGCGTAGGT 60.676 52.381 0.00 0.00 46.03 3.08
316 317 1.009829 GCTGAATGAACCAGCGTAGG 58.990 55.000 0.00 0.00 46.03 3.18
322 323 4.157289 GCCCATATATGCTGAATGAACCAG 59.843 45.833 7.24 0.00 34.88 4.00
323 324 4.081406 GCCCATATATGCTGAATGAACCA 58.919 43.478 7.24 0.00 0.00 3.67
324 325 4.081406 TGCCCATATATGCTGAATGAACC 58.919 43.478 7.24 0.00 0.00 3.62
325 326 5.009911 TGTTGCCCATATATGCTGAATGAAC 59.990 40.000 7.24 3.87 0.00 3.18
326 327 5.139001 TGTTGCCCATATATGCTGAATGAA 58.861 37.500 7.24 0.00 0.00 2.57
327 328 4.727677 TGTTGCCCATATATGCTGAATGA 58.272 39.130 7.24 0.00 0.00 2.57
328 329 5.047590 ACATGTTGCCCATATATGCTGAATG 60.048 40.000 7.24 8.07 30.71 2.67
329 330 5.047590 CACATGTTGCCCATATATGCTGAAT 60.048 40.000 7.24 0.00 30.71 2.57
330 331 4.278919 CACATGTTGCCCATATATGCTGAA 59.721 41.667 7.24 0.00 30.71 3.02
331 332 3.822167 CACATGTTGCCCATATATGCTGA 59.178 43.478 7.24 0.00 30.71 4.26
332 333 3.613193 GCACATGTTGCCCATATATGCTG 60.613 47.826 7.24 1.99 46.63 4.41
333 334 2.559668 GCACATGTTGCCCATATATGCT 59.440 45.455 7.24 0.00 46.63 3.79
334 335 2.950433 GCACATGTTGCCCATATATGC 58.050 47.619 7.24 0.00 46.63 3.14
345 346 0.733566 GAACCCGCATGCACATGTTG 60.734 55.000 19.57 0.00 40.80 3.33
346 347 0.895100 AGAACCCGCATGCACATGTT 60.895 50.000 19.57 13.94 40.80 2.71
347 348 1.303561 AGAACCCGCATGCACATGT 60.304 52.632 19.57 5.53 40.80 3.21
348 349 1.430632 GAGAACCCGCATGCACATG 59.569 57.895 19.57 6.25 41.60 3.21
349 350 1.750399 GGAGAACCCGCATGCACAT 60.750 57.895 19.57 0.00 0.00 3.21
350 351 2.359850 GGAGAACCCGCATGCACA 60.360 61.111 19.57 0.00 0.00 4.57
375 376 1.579932 CTGTGTACTCACGGTCGCT 59.420 57.895 0.00 0.00 46.49 4.93
445 450 8.177119 TGATATTAGCAAGTTGAAACCAAGTT 57.823 30.769 7.16 0.00 37.60 2.66
446 451 7.759489 TGATATTAGCAAGTTGAAACCAAGT 57.241 32.000 7.16 0.00 0.00 3.16
447 452 9.722056 GTATGATATTAGCAAGTTGAAACCAAG 57.278 33.333 7.16 0.00 0.00 3.61
475 496 9.176460 GGCTTACCTAGATATACACCTAAGTAG 57.824 40.741 0.00 0.00 0.00 2.57
481 502 6.614087 TGTTTGGCTTACCTAGATATACACCT 59.386 38.462 0.00 0.00 36.63 4.00
488 509 6.990349 GCTATTGTGTTTGGCTTACCTAGATA 59.010 38.462 0.00 0.00 36.63 1.98
500 521 9.378551 TCTGTTTAGTATAGCTATTGTGTTTGG 57.621 33.333 12.39 0.00 0.00 3.28
504 525 8.750298 ACACTCTGTTTAGTATAGCTATTGTGT 58.250 33.333 12.39 8.59 0.00 3.72
602 627 9.529325 CACTGCACTTTGTTTAGTATAGCTATA 57.471 33.333 9.47 9.47 0.00 1.31
612 637 4.789095 ACGTACACTGCACTTTGTTTAG 57.211 40.909 0.00 0.00 0.00 1.85
620 645 0.033504 CTCCCAACGTACACTGCACT 59.966 55.000 0.00 0.00 0.00 4.40
621 646 0.249741 ACTCCCAACGTACACTGCAC 60.250 55.000 0.00 0.00 0.00 4.57
622 647 0.466543 AACTCCCAACGTACACTGCA 59.533 50.000 0.00 0.00 0.00 4.41
623 648 0.865769 CAACTCCCAACGTACACTGC 59.134 55.000 0.00 0.00 0.00 4.40
624 649 2.234300 ACAACTCCCAACGTACACTG 57.766 50.000 0.00 0.00 0.00 3.66
683 717 2.299297 ACCTTGTCTGAACTTACCTCCG 59.701 50.000 0.00 0.00 0.00 4.63
699 733 4.689345 CCAGTAAGTCCGAAAACTACCTTG 59.311 45.833 0.00 0.00 0.00 3.61
715 749 4.331968 TGTGTAAAAGCATCCCCAGTAAG 58.668 43.478 0.00 0.00 0.00 2.34
723 757 6.745116 ACCTAAAAGTTGTGTAAAAGCATCC 58.255 36.000 0.00 0.00 0.00 3.51
738 772 6.002653 AGTGAAGACAAGGAACCTAAAAGT 57.997 37.500 0.00 0.00 0.00 2.66
757 791 5.765182 GTGAAAGGAGAATGAAAGGAAGTGA 59.235 40.000 0.00 0.00 0.00 3.41
818 880 2.423446 CAGAGATACTGCCGCCCC 59.577 66.667 0.00 0.00 39.86 5.80
903 972 4.616802 GGCATATGAAGAACAAAACACACG 59.383 41.667 6.97 0.00 0.00 4.49
945 1017 1.978580 TGAAACAAGGGGAGAGAGGTC 59.021 52.381 0.00 0.00 0.00 3.85
1298 1402 2.426024 GTGATGTAGCCGAGTACCTTGA 59.574 50.000 0.00 0.00 0.00 3.02
1401 1505 2.154462 AGGCCAAACTTGTTCATCTCG 58.846 47.619 5.01 0.00 0.00 4.04
1644 1748 0.403271 ACTGGAAATGCTGCTGGACT 59.597 50.000 0.00 0.00 0.00 3.85
1858 2004 2.107204 ACAGTGGCTTCAGTTCATCCTT 59.893 45.455 0.00 0.00 0.00 3.36
1987 2133 8.431222 TGAAAACAATTCCCATGAATCTTCTTT 58.569 29.630 0.00 0.00 40.34 2.52
2354 2502 5.945784 TGAGTTAAATCCATTGTTCCCTCTG 59.054 40.000 0.00 0.00 0.00 3.35
2394 2542 6.670902 AGGACCTCCAAATCAATTCATGAAAT 59.329 34.615 13.09 0.02 39.14 2.17
2469 2632 7.078249 ACATACAATTGTCCCATATGCTCTA 57.922 36.000 15.85 0.00 0.00 2.43
2471 2634 7.744087 TTACATACAATTGTCCCATATGCTC 57.256 36.000 15.85 0.00 0.00 4.26
2751 2975 4.996758 GCATTTATGGCTTTCAAACTGGTT 59.003 37.500 0.00 0.00 0.00 3.67
2803 3027 5.678483 GCAATGTAGAATTGACGCTACAATG 59.322 40.000 12.49 12.49 46.89 2.82
2842 3066 9.853555 CCTCAAAGTTTGCATGTTATACAATAA 57.146 29.630 10.90 0.00 0.00 1.40
2875 3099 1.038681 TGTCGTAGCCCCTCGCAATA 61.039 55.000 0.00 0.00 41.38 1.90
3190 3415 2.235016 AGACGAGCAGAGAACACTTCT 58.765 47.619 0.00 0.00 44.21 2.85
3191 3416 2.715737 AGACGAGCAGAGAACACTTC 57.284 50.000 0.00 0.00 0.00 3.01
3196 3421 2.096819 CCTGTCTAGACGAGCAGAGAAC 59.903 54.545 17.85 0.00 33.57 3.01
3202 3427 2.491675 TCTTCCTGTCTAGACGAGCA 57.508 50.000 17.85 1.58 0.00 4.26
3205 3430 5.105716 CCTCATTTTCTTCCTGTCTAGACGA 60.106 44.000 17.85 7.34 0.00 4.20
3206 3431 5.105752 CCTCATTTTCTTCCTGTCTAGACG 58.894 45.833 17.85 12.12 0.00 4.18
3208 3433 4.532126 TGCCTCATTTTCTTCCTGTCTAGA 59.468 41.667 0.00 0.00 0.00 2.43
3211 3436 3.795688 TGCCTCATTTTCTTCCTGTCT 57.204 42.857 0.00 0.00 0.00 3.41
3212 3437 3.760684 ACATGCCTCATTTTCTTCCTGTC 59.239 43.478 0.00 0.00 0.00 3.51
3213 3438 3.771216 ACATGCCTCATTTTCTTCCTGT 58.229 40.909 0.00 0.00 0.00 4.00
3214 3439 5.902613 TTACATGCCTCATTTTCTTCCTG 57.097 39.130 0.00 0.00 0.00 3.86
3215 3440 6.189859 TCATTACATGCCTCATTTTCTTCCT 58.810 36.000 0.00 0.00 0.00 3.36
3216 3441 6.455360 TCATTACATGCCTCATTTTCTTCC 57.545 37.500 0.00 0.00 0.00 3.46
3217 3442 6.319658 TCCTCATTACATGCCTCATTTTCTTC 59.680 38.462 0.00 0.00 0.00 2.87
3218 3443 6.189859 TCCTCATTACATGCCTCATTTTCTT 58.810 36.000 0.00 0.00 0.00 2.52
3219 3444 5.759059 TCCTCATTACATGCCTCATTTTCT 58.241 37.500 0.00 0.00 0.00 2.52
3249 3474 5.279910 GCTATGAGGTTCTAGATGCTGGAAT 60.280 44.000 0.00 0.00 33.81 3.01
3285 3510 5.536161 GCCACCATATCCATACAACTCAAAT 59.464 40.000 0.00 0.00 0.00 2.32
3448 3673 4.821805 ACACAATGTCTTCAGTTTACCCAG 59.178 41.667 0.00 0.00 0.00 4.45
3625 3850 4.755411 CGGGTGATTACTAGCTTCTCAAA 58.245 43.478 0.00 0.00 0.00 2.69
3644 3869 2.438434 CAACCTTAGGGCAGCGGG 60.438 66.667 2.32 0.00 35.63 6.13
3728 3977 3.692593 GGATGTACGCAACCTTGGTAAAT 59.307 43.478 0.00 0.00 35.02 1.40
3789 4061 3.537206 AAGGTTCGAAGGCAGCGCT 62.537 57.895 2.64 2.64 0.00 5.92
3855 4127 0.329261 CATCAGGCAACCCTTCCAGA 59.671 55.000 0.00 0.00 40.33 3.86
3859 4131 0.259938 ATCCCATCAGGCAACCCTTC 59.740 55.000 0.00 0.00 40.33 3.46
3886 4158 0.968393 AGCTCCCGGAGAGAAGTGAC 60.968 60.000 19.33 0.00 46.50 3.67
3897 4169 0.105039 GAGTGATTACCAGCTCCCGG 59.895 60.000 0.00 0.00 0.00 5.73
3908 4180 6.068670 TCTATCCCTCGACAATGAGTGATTA 58.931 40.000 0.00 0.00 35.23 1.75
3973 4259 3.069729 CAGCCCACTATGGTTAGGTAGTC 59.930 52.174 0.00 0.00 35.17 2.59
3976 4262 1.766496 GCAGCCCACTATGGTTAGGTA 59.234 52.381 0.00 0.00 35.17 3.08
3978 4264 0.179018 GGCAGCCCACTATGGTTAGG 60.179 60.000 0.00 0.00 35.17 2.69
3981 4267 2.683475 GGGCAGCCCACTATGGTT 59.317 61.111 27.33 0.00 44.65 3.67
4254 4725 2.872038 GCAGTCAGTGGGGAGTTACTTG 60.872 54.545 0.00 0.00 0.00 3.16
4500 5968 3.438297 TTAAGCAGAGATGGAGCGTAC 57.562 47.619 0.00 0.00 0.00 3.67
4501 5969 4.672587 AATTAAGCAGAGATGGAGCGTA 57.327 40.909 0.00 0.00 0.00 4.42
4502 5970 3.550437 AATTAAGCAGAGATGGAGCGT 57.450 42.857 0.00 0.00 0.00 5.07
4503 5971 3.873361 TGAAATTAAGCAGAGATGGAGCG 59.127 43.478 0.00 0.00 0.00 5.03
4571 6083 8.186163 TGATTTATGATGCAGAACAGATGTTTC 58.814 33.333 0.00 0.00 38.56 2.78
4639 6205 8.200792 CAGTATCTAGTCTGCTAACCAATTTCT 58.799 37.037 0.00 0.00 0.00 2.52
4671 6240 3.008813 AGCACTTGATTCCTGACAGACAT 59.991 43.478 3.32 0.00 0.00 3.06
4677 6246 4.507710 TCATACAGCACTTGATTCCTGAC 58.492 43.478 0.00 0.00 0.00 3.51
4692 6261 4.149571 GCGTTGCAGATGACTATCATACAG 59.850 45.833 0.00 0.00 37.20 2.74
4717 6286 7.699566 TGAGCTCGTTTGTTTAACAACTAAAT 58.300 30.769 10.28 0.00 37.90 1.40
4725 6294 5.974751 TGGAAAATGAGCTCGTTTGTTTAAC 59.025 36.000 29.73 17.68 35.45 2.01
4785 6354 7.015584 ACAGGAGTCCAAAGCAAGATAATTTTT 59.984 33.333 12.86 0.00 0.00 1.94
4844 6415 0.689623 CAGCTTGGGTCTTCCTGACT 59.310 55.000 0.00 0.00 44.74 3.41
4913 6491 4.736611 ATTGCCAGAATATCATCCACCT 57.263 40.909 0.00 0.00 0.00 4.00
4985 6568 1.471684 CTTTCAGAGATGGCAACCTGC 59.528 52.381 0.00 0.00 44.08 4.85
4986 6569 1.471684 GCTTTCAGAGATGGCAACCTG 59.528 52.381 0.00 0.00 0.00 4.00
4987 6570 1.074405 TGCTTTCAGAGATGGCAACCT 59.926 47.619 0.00 0.00 0.00 3.50
4988 6571 1.538047 TGCTTTCAGAGATGGCAACC 58.462 50.000 0.00 0.00 0.00 3.77
5064 6647 4.323417 ACAACATTCATCACATACCGTGT 58.677 39.130 0.00 0.00 46.44 4.49
5070 6653 7.984422 ACTTTCAGACAACATTCATCACATA 57.016 32.000 0.00 0.00 0.00 2.29
5112 6695 1.303309 GCCACAGCATGATCTACCAC 58.697 55.000 0.00 0.00 39.69 4.16
5113 6696 0.181114 GGCCACAGCATGATCTACCA 59.819 55.000 0.00 0.00 42.56 3.25
5114 6697 0.882042 CGGCCACAGCATGATCTACC 60.882 60.000 2.24 0.00 42.56 3.18
5115 6698 0.179073 ACGGCCACAGCATGATCTAC 60.179 55.000 2.24 0.00 42.56 2.59
5140 6728 4.517453 CGTGGAGAAAATTTGTAGGGAACA 59.483 41.667 0.00 0.00 35.88 3.18
5163 6751 1.520564 TCTGCACGGACACACACAC 60.521 57.895 0.00 0.00 0.00 3.82
5164 6752 1.520564 GTCTGCACGGACACACACA 60.521 57.895 4.72 0.00 36.35 3.72


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.