Multiple sequence alignment - TraesCS7D01G122100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G122100 chr7D 100.000 4163 0 0 1 4163 75957943 75953781 0.000000e+00 7688.0
1 TraesCS7D01G122100 chr7D 89.180 1525 148 8 1542 3059 124034242 124035756 0.000000e+00 1886.0
2 TraesCS7D01G122100 chr7B 90.977 2948 184 45 184 3088 22461741 22464649 0.000000e+00 3895.0
3 TraesCS7D01G122100 chr7B 89.498 1533 132 15 1566 3088 85310157 85308644 0.000000e+00 1912.0
4 TraesCS7D01G122100 chr7B 84.637 1048 100 31 3154 4163 22464653 22465677 0.000000e+00 987.0
5 TraesCS7D01G122100 chr7B 86.081 740 74 15 184 908 22511105 22511830 0.000000e+00 769.0
6 TraesCS7D01G122100 chr7B 76.037 217 37 12 3408 3611 706115080 706115294 9.520000e-17 99.0
7 TraesCS7D01G122100 chr7B 96.610 59 2 0 1 59 732155866 732155808 9.520000e-17 99.0
8 TraesCS7D01G122100 chr7B 80.000 130 23 3 3407 3534 537518665 537518537 4.430000e-15 93.5
9 TraesCS7D01G122100 chr7A 93.585 1746 76 15 1356 3088 80143155 80144877 0.000000e+00 2571.0
10 TraesCS7D01G122100 chr7A 88.477 1536 146 16 1566 3088 126756605 126755088 0.000000e+00 1827.0
11 TraesCS7D01G122100 chr7A 85.889 1389 114 40 1023 2403 80429839 80428525 0.000000e+00 1404.0
12 TraesCS7D01G122100 chr7A 86.052 1226 89 35 184 1366 80141927 80143113 0.000000e+00 1242.0
13 TraesCS7D01G122100 chr7A 91.715 688 52 4 2396 3083 80428164 80427482 0.000000e+00 950.0
14 TraesCS7D01G122100 chr7A 82.956 751 92 16 2313 3059 126750168 126749450 0.000000e+00 645.0
15 TraesCS7D01G122100 chr7A 89.130 414 28 8 3150 3558 80144877 80145278 2.230000e-137 499.0
16 TraesCS7D01G122100 chr7A 79.528 254 34 13 213 463 46775931 46775693 9.260000e-37 165.0
17 TraesCS7D01G122100 chrUn 94.030 134 8 0 54 187 231350842 231350709 1.960000e-48 204.0
18 TraesCS7D01G122100 chrUn 94.030 134 8 0 54 187 231355467 231355334 1.960000e-48 204.0
19 TraesCS7D01G122100 chrUn 94.030 134 8 0 54 187 231360022 231359889 1.960000e-48 204.0
20 TraesCS7D01G122100 chrUn 94.030 134 8 0 54 187 368460129 368459996 1.960000e-48 204.0
21 TraesCS7D01G122100 chrUn 95.000 60 3 0 1 60 26508515 26508456 1.230000e-15 95.3
22 TraesCS7D01G122100 chr1A 94.030 134 8 0 54 187 474075240 474075373 1.960000e-48 204.0
23 TraesCS7D01G122100 chr1A 94.030 134 8 0 54 187 474081919 474082052 1.960000e-48 204.0
24 TraesCS7D01G122100 chr1A 88.608 79 5 4 1 78 19308575 19308500 4.430000e-15 93.5
25 TraesCS7D01G122100 chr1A 88.608 79 5 4 1 78 19419205 19419130 4.430000e-15 93.5
26 TraesCS7D01G122100 chr1A 85.526 76 9 2 3543 3618 264222387 264222314 1.240000e-10 78.7
27 TraesCS7D01G122100 chr3D 81.154 260 37 10 213 467 523208198 523207946 9.130000e-47 198.0
28 TraesCS7D01G122100 chr3D 81.022 137 24 2 3399 3533 582834129 582834265 1.580000e-19 108.0
29 TraesCS7D01G122100 chr3D 92.537 67 3 2 1 66 523902496 523902561 1.230000e-15 95.3
30 TraesCS7D01G122100 chr3D 85.882 85 7 4 1 81 373510546 373510629 7.420000e-13 86.1
31 TraesCS7D01G122100 chr6A 92.537 134 10 0 54 187 530251115 530250982 4.250000e-45 193.0
32 TraesCS7D01G122100 chr6A 80.242 248 43 6 226 469 416604555 416604310 9.190000e-42 182.0
33 TraesCS7D01G122100 chr3B 92.537 134 10 0 54 187 334524355 334524222 4.250000e-45 193.0
34 TraesCS7D01G122100 chr3B 81.122 196 35 2 3401 3594 670692511 670692316 5.570000e-34 156.0
35 TraesCS7D01G122100 chr3B 79.439 214 26 15 3407 3614 565265189 565264988 7.260000e-28 135.0
36 TraesCS7D01G122100 chr2B 91.367 139 12 0 54 192 133123085 133122947 1.530000e-44 191.0
37 TraesCS7D01G122100 chr2B 80.315 254 43 7 214 462 798385961 798386212 7.110000e-43 185.0
38 TraesCS7D01G122100 chr2B 80.165 242 43 5 225 462 798385523 798385763 4.280000e-40 176.0
39 TraesCS7D01G122100 chr2B 96.721 61 1 1 1 61 593629807 593629748 2.650000e-17 100.0
40 TraesCS7D01G122100 chr4B 81.818 220 35 5 3401 3618 57527439 57527223 3.310000e-41 180.0
41 TraesCS7D01G122100 chr6D 81.944 216 31 7 3401 3611 426091432 426091220 4.280000e-40 176.0
42 TraesCS7D01G122100 chr2A 79.297 256 37 14 214 463 765764771 765764526 9.260000e-37 165.0
43 TraesCS7D01G122100 chr3A 80.184 217 32 10 3407 3619 571174468 571174259 7.210000e-33 152.0
44 TraesCS7D01G122100 chr3A 79.459 185 24 12 1843 2023 10291194 10291368 7.310000e-23 119.0
45 TraesCS7D01G122100 chr4D 81.410 156 21 7 1843 1994 127928638 127928789 2.030000e-23 121.0
46 TraesCS7D01G122100 chr5B 75.000 252 55 7 214 461 640542842 640543089 4.400000e-20 110.0
47 TraesCS7D01G122100 chr5B 74.884 215 49 5 3407 3618 688363092 688362880 4.430000e-15 93.5
48 TraesCS7D01G122100 chr4A 95.312 64 1 2 1 63 85588566 85588628 2.650000e-17 100.0
49 TraesCS7D01G122100 chr1B 93.750 64 3 1 1 64 395802124 395802062 1.230000e-15 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G122100 chr7D 75953781 75957943 4162 True 7688.000000 7688 100.000 1 4163 1 chr7D.!!$R1 4162
1 TraesCS7D01G122100 chr7D 124034242 124035756 1514 False 1886.000000 1886 89.180 1542 3059 1 chr7D.!!$F1 1517
2 TraesCS7D01G122100 chr7B 22461741 22465677 3936 False 2441.000000 3895 87.807 184 4163 2 chr7B.!!$F3 3979
3 TraesCS7D01G122100 chr7B 85308644 85310157 1513 True 1912.000000 1912 89.498 1566 3088 1 chr7B.!!$R1 1522
4 TraesCS7D01G122100 chr7B 22511105 22511830 725 False 769.000000 769 86.081 184 908 1 chr7B.!!$F1 724
5 TraesCS7D01G122100 chr7A 126755088 126756605 1517 True 1827.000000 1827 88.477 1566 3088 1 chr7A.!!$R3 1522
6 TraesCS7D01G122100 chr7A 80141927 80145278 3351 False 1437.333333 2571 89.589 184 3558 3 chr7A.!!$F1 3374
7 TraesCS7D01G122100 chr7A 80427482 80429839 2357 True 1177.000000 1404 88.802 1023 3083 2 chr7A.!!$R4 2060
8 TraesCS7D01G122100 chr7A 126749450 126750168 718 True 645.000000 645 82.956 2313 3059 1 chr7A.!!$R2 746

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
55 56 0.515564 GCGTTAGCGTTGTCCAACAT 59.484 50.000 10.49 1.37 41.20 2.71 F
837 865 0.737715 GGGCTAGTGTGCGAAGAGTG 60.738 60.000 0.00 0.00 0.00 3.51 F
1458 1591 0.029035 GCTTGCTCATGCTTGATCGG 59.971 55.000 2.33 0.00 40.48 4.18 F
2774 3314 1.007964 CGCGGAGATCTACCTGCTG 60.008 63.158 12.11 4.05 0.00 4.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1412 1540 0.107654 GTAGGGATCGGCAAAGCTGT 60.108 55.0 0.00 0.00 36.18 4.40 R
2276 2428 0.866061 CGAACTCGGCCATGTCGTAG 60.866 60.0 2.24 5.19 35.37 3.51 R
2819 3359 1.150567 CGAGGCTGCTGCTCATGTAC 61.151 60.0 15.64 0.00 39.59 2.90 R
4028 4612 0.251354 TGAGTCCATCAGAGGCAAGC 59.749 55.0 0.00 0.00 32.77 4.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 4.278513 CGGGTTTGGCTCCCACCA 62.279 66.667 11.94 0.00 44.81 4.17
27 28 2.600470 GGGTTTGGCTCCCACCAC 60.600 66.667 7.81 0.00 44.05 4.16
28 29 2.197324 GGTTTGGCTCCCACCACA 59.803 61.111 0.00 0.00 40.19 4.17
29 30 2.200337 GGTTTGGCTCCCACCACAC 61.200 63.158 0.00 0.00 40.19 3.82
30 31 2.203280 TTTGGCTCCCACCACACG 60.203 61.111 0.00 0.00 40.19 4.49
31 32 3.050354 TTTGGCTCCCACCACACGT 62.050 57.895 0.00 0.00 40.19 4.49
32 33 3.765894 TTGGCTCCCACCACACGTG 62.766 63.158 15.48 15.48 40.19 4.49
33 34 4.250305 GGCTCCCACCACACGTGT 62.250 66.667 17.22 17.22 41.26 4.49
34 35 2.972505 GCTCCCACCACACGTGTG 60.973 66.667 36.13 36.13 45.23 3.82
42 43 3.240203 CACACGTGTGGGCGTTAG 58.760 61.111 35.65 12.08 43.83 2.34
43 44 2.663852 ACACGTGTGGGCGTTAGC 60.664 61.111 22.71 0.00 43.83 3.09
44 45 3.773630 CACGTGTGGGCGTTAGCG 61.774 66.667 7.58 0.00 43.83 4.26
45 46 4.289245 ACGTGTGGGCGTTAGCGT 62.289 61.111 0.00 0.00 43.04 5.07
46 47 3.039588 CGTGTGGGCGTTAGCGTT 61.040 61.111 0.00 0.00 46.35 4.84
47 48 2.554272 GTGTGGGCGTTAGCGTTG 59.446 61.111 0.00 0.00 46.35 4.10
48 49 2.109387 TGTGGGCGTTAGCGTTGT 59.891 55.556 0.00 0.00 46.35 3.32
49 50 1.957186 TGTGGGCGTTAGCGTTGTC 60.957 57.895 0.00 0.00 46.35 3.18
50 51 2.357760 TGGGCGTTAGCGTTGTCC 60.358 61.111 0.00 0.00 46.35 4.02
51 52 2.357760 GGGCGTTAGCGTTGTCCA 60.358 61.111 0.00 0.00 46.35 4.02
52 53 1.962306 GGGCGTTAGCGTTGTCCAA 60.962 57.895 0.00 0.00 46.35 3.53
53 54 1.205820 GGCGTTAGCGTTGTCCAAC 59.794 57.895 0.00 0.00 46.35 3.77
54 55 1.500512 GGCGTTAGCGTTGTCCAACA 61.501 55.000 10.49 0.00 46.35 3.33
55 56 0.515564 GCGTTAGCGTTGTCCAACAT 59.484 50.000 10.49 1.37 41.20 2.71
56 57 1.069500 GCGTTAGCGTTGTCCAACATT 60.069 47.619 10.49 0.81 41.20 2.71
57 58 2.603652 GCGTTAGCGTTGTCCAACATTT 60.604 45.455 10.49 0.00 41.20 2.32
58 59 3.364167 GCGTTAGCGTTGTCCAACATTTA 60.364 43.478 10.49 0.00 41.20 1.40
59 60 4.670735 GCGTTAGCGTTGTCCAACATTTAT 60.671 41.667 10.49 0.00 41.20 1.40
60 61 5.387279 CGTTAGCGTTGTCCAACATTTATT 58.613 37.500 10.49 0.00 41.20 1.40
61 62 6.535811 CGTTAGCGTTGTCCAACATTTATTA 58.464 36.000 10.49 0.00 41.20 0.98
62 63 7.184106 CGTTAGCGTTGTCCAACATTTATTAT 58.816 34.615 10.49 0.00 41.20 1.28
63 64 7.163520 CGTTAGCGTTGTCCAACATTTATTATG 59.836 37.037 10.49 0.00 41.20 1.90
64 65 6.751514 AGCGTTGTCCAACATTTATTATGA 57.248 33.333 10.49 0.00 41.20 2.15
65 66 7.333528 AGCGTTGTCCAACATTTATTATGAT 57.666 32.000 10.49 0.00 41.20 2.45
66 67 8.445275 AGCGTTGTCCAACATTTATTATGATA 57.555 30.769 10.49 0.00 41.20 2.15
67 68 9.066892 AGCGTTGTCCAACATTTATTATGATAT 57.933 29.630 10.49 0.00 41.20 1.63
68 69 9.117145 GCGTTGTCCAACATTTATTATGATATG 57.883 33.333 10.49 0.00 41.20 1.78
69 70 9.611284 CGTTGTCCAACATTTATTATGATATGG 57.389 33.333 10.49 0.00 41.20 2.74
93 94 9.560860 TGGTATTATGATATGATACTCAACCCT 57.439 33.333 0.00 0.00 33.61 4.34
97 98 9.781425 ATTATGATATGATACTCAACCCTCTCT 57.219 33.333 0.00 0.00 0.00 3.10
98 99 9.607333 TTATGATATGATACTCAACCCTCTCTT 57.393 33.333 0.00 0.00 0.00 2.85
99 100 7.921041 TGATATGATACTCAACCCTCTCTTT 57.079 36.000 0.00 0.00 0.00 2.52
100 101 7.957002 TGATATGATACTCAACCCTCTCTTTC 58.043 38.462 0.00 0.00 0.00 2.62
101 102 7.786943 TGATATGATACTCAACCCTCTCTTTCT 59.213 37.037 0.00 0.00 0.00 2.52
102 103 6.882768 ATGATACTCAACCCTCTCTTTCTT 57.117 37.500 0.00 0.00 0.00 2.52
103 104 6.287589 TGATACTCAACCCTCTCTTTCTTC 57.712 41.667 0.00 0.00 0.00 2.87
104 105 5.780282 TGATACTCAACCCTCTCTTTCTTCA 59.220 40.000 0.00 0.00 0.00 3.02
105 106 6.441924 TGATACTCAACCCTCTCTTTCTTCAT 59.558 38.462 0.00 0.00 0.00 2.57
106 107 5.574970 ACTCAACCCTCTCTTTCTTCATT 57.425 39.130 0.00 0.00 0.00 2.57
107 108 5.946486 ACTCAACCCTCTCTTTCTTCATTT 58.054 37.500 0.00 0.00 0.00 2.32
108 109 7.079451 ACTCAACCCTCTCTTTCTTCATTTA 57.921 36.000 0.00 0.00 0.00 1.40
109 110 7.694093 ACTCAACCCTCTCTTTCTTCATTTAT 58.306 34.615 0.00 0.00 0.00 1.40
110 111 8.166726 ACTCAACCCTCTCTTTCTTCATTTATT 58.833 33.333 0.00 0.00 0.00 1.40
111 112 8.940397 TCAACCCTCTCTTTCTTCATTTATTT 57.060 30.769 0.00 0.00 0.00 1.40
112 113 9.014297 TCAACCCTCTCTTTCTTCATTTATTTC 57.986 33.333 0.00 0.00 0.00 2.17
113 114 9.018582 CAACCCTCTCTTTCTTCATTTATTTCT 57.981 33.333 0.00 0.00 0.00 2.52
115 116 9.898152 ACCCTCTCTTTCTTCATTTATTTCTAG 57.102 33.333 0.00 0.00 0.00 2.43
116 117 9.336171 CCCTCTCTTTCTTCATTTATTTCTAGG 57.664 37.037 0.00 0.00 0.00 3.02
121 122 9.449719 TCTTTCTTCATTTATTTCTAGGACACC 57.550 33.333 0.00 0.00 0.00 4.16
122 123 9.454859 CTTTCTTCATTTATTTCTAGGACACCT 57.545 33.333 0.00 0.00 37.71 4.00
123 124 9.807921 TTTCTTCATTTATTTCTAGGACACCTT 57.192 29.630 0.00 0.00 34.61 3.50
134 135 8.934023 TTTCTAGGACACCTTATCAAAATTGT 57.066 30.769 0.00 0.00 34.61 2.71
135 136 8.561738 TTCTAGGACACCTTATCAAAATTGTC 57.438 34.615 0.00 0.00 34.61 3.18
136 137 7.918076 TCTAGGACACCTTATCAAAATTGTCT 58.082 34.615 0.00 0.00 34.61 3.41
137 138 9.042450 TCTAGGACACCTTATCAAAATTGTCTA 57.958 33.333 0.00 0.00 34.61 2.59
138 139 9.319143 CTAGGACACCTTATCAAAATTGTCTAG 57.681 37.037 0.00 0.00 34.61 2.43
139 140 7.690256 AGGACACCTTATCAAAATTGTCTAGT 58.310 34.615 0.00 0.00 34.93 2.57
140 141 8.164070 AGGACACCTTATCAAAATTGTCTAGTT 58.836 33.333 0.00 0.00 34.93 2.24
141 142 8.237267 GGACACCTTATCAAAATTGTCTAGTTG 58.763 37.037 0.00 0.00 34.93 3.16
142 143 8.110860 ACACCTTATCAAAATTGTCTAGTTGG 57.889 34.615 0.00 0.00 0.00 3.77
143 144 7.029563 CACCTTATCAAAATTGTCTAGTTGGC 58.970 38.462 0.00 0.00 0.00 4.52
144 145 6.719370 ACCTTATCAAAATTGTCTAGTTGGCA 59.281 34.615 0.00 0.00 0.00 4.92
145 146 7.397192 ACCTTATCAAAATTGTCTAGTTGGCAT 59.603 33.333 0.00 0.00 0.00 4.40
146 147 7.703621 CCTTATCAAAATTGTCTAGTTGGCATG 59.296 37.037 0.00 0.00 0.00 4.06
147 148 4.808558 TCAAAATTGTCTAGTTGGCATGC 58.191 39.130 9.90 9.90 0.00 4.06
148 149 4.280425 TCAAAATTGTCTAGTTGGCATGCA 59.720 37.500 21.36 2.54 0.00 3.96
149 150 5.047164 TCAAAATTGTCTAGTTGGCATGCAT 60.047 36.000 21.36 4.57 0.00 3.96
150 151 4.380841 AATTGTCTAGTTGGCATGCATG 57.619 40.909 22.70 22.70 0.00 4.06
151 152 2.785540 TGTCTAGTTGGCATGCATGA 57.214 45.000 30.64 7.50 0.00 3.07
152 153 3.286329 TGTCTAGTTGGCATGCATGAT 57.714 42.857 30.64 11.73 0.00 2.45
153 154 4.420522 TGTCTAGTTGGCATGCATGATA 57.579 40.909 30.64 14.66 0.00 2.15
154 155 4.129380 TGTCTAGTTGGCATGCATGATAC 58.871 43.478 30.64 21.28 0.00 2.24
155 156 4.141642 TGTCTAGTTGGCATGCATGATACT 60.142 41.667 30.64 26.11 0.00 2.12
156 157 5.070313 TGTCTAGTTGGCATGCATGATACTA 59.930 40.000 30.64 25.87 0.00 1.82
157 158 5.636965 GTCTAGTTGGCATGCATGATACTAG 59.363 44.000 31.90 31.90 36.72 2.57
158 159 3.144506 AGTTGGCATGCATGATACTAGC 58.855 45.455 30.64 12.56 0.00 3.42
159 160 3.144506 GTTGGCATGCATGATACTAGCT 58.855 45.455 30.64 0.00 0.00 3.32
160 161 4.040829 AGTTGGCATGCATGATACTAGCTA 59.959 41.667 30.64 7.90 0.00 3.32
161 162 4.831674 TGGCATGCATGATACTAGCTAT 57.168 40.909 30.64 0.00 0.00 2.97
162 163 4.510571 TGGCATGCATGATACTAGCTATG 58.489 43.478 30.64 0.23 0.00 2.23
163 164 4.223477 TGGCATGCATGATACTAGCTATGA 59.777 41.667 30.64 0.00 0.00 2.15
164 165 4.809958 GGCATGCATGATACTAGCTATGAG 59.190 45.833 30.64 0.00 0.00 2.90
165 166 5.394993 GGCATGCATGATACTAGCTATGAGA 60.395 44.000 30.64 0.00 0.00 3.27
166 167 5.519566 GCATGCATGATACTAGCTATGAGAC 59.480 44.000 30.64 2.07 0.00 3.36
167 168 6.627731 GCATGCATGATACTAGCTATGAGACT 60.628 42.308 30.64 0.00 0.00 3.24
168 169 7.416101 GCATGCATGATACTAGCTATGAGACTA 60.416 40.741 30.64 0.00 0.00 2.59
169 170 8.465201 CATGCATGATACTAGCTATGAGACTAA 58.535 37.037 22.59 0.00 0.00 2.24
170 171 7.821652 TGCATGATACTAGCTATGAGACTAAC 58.178 38.462 0.00 0.00 0.00 2.34
171 172 7.448469 TGCATGATACTAGCTATGAGACTAACA 59.552 37.037 0.00 0.00 0.00 2.41
172 173 8.465999 GCATGATACTAGCTATGAGACTAACAT 58.534 37.037 0.00 0.00 0.00 2.71
176 177 9.976255 GATACTAGCTATGAGACTAACATTACG 57.024 37.037 0.00 0.00 0.00 3.18
177 178 7.204496 ACTAGCTATGAGACTAACATTACGG 57.796 40.000 0.00 0.00 0.00 4.02
178 179 4.872664 AGCTATGAGACTAACATTACGGC 58.127 43.478 0.00 0.00 0.00 5.68
179 180 3.988517 GCTATGAGACTAACATTACGGCC 59.011 47.826 0.00 0.00 0.00 6.13
180 181 4.500887 GCTATGAGACTAACATTACGGCCA 60.501 45.833 2.24 0.00 0.00 5.36
181 182 3.520290 TGAGACTAACATTACGGCCAG 57.480 47.619 2.24 0.00 0.00 4.85
182 183 2.202566 GAGACTAACATTACGGCCAGC 58.797 52.381 2.24 0.00 0.00 4.85
189 190 3.012934 ACATTACGGCCAGCCTAATTT 57.987 42.857 2.24 1.34 0.00 1.82
211 212 7.435068 TTTGTCAGACAATTAACTAGGCTTC 57.565 36.000 16.89 0.00 38.00 3.86
221 222 8.934697 ACAATTAACTAGGCTTCCATCTATACA 58.065 33.333 0.00 0.00 0.00 2.29
251 252 1.065854 AGACTCAAAAGGGCAGATCGG 60.066 52.381 0.00 0.00 0.00 4.18
260 261 3.527507 AGGGCAGATCGGACTAATCTA 57.472 47.619 0.00 0.00 32.24 1.98
273 274 5.297569 GACTAATCTAGGCCATCAAACCT 57.702 43.478 5.01 0.00 40.24 3.50
291 292 3.690460 ACCTGATCAATCCAACAACTCC 58.310 45.455 0.00 0.00 0.00 3.85
663 675 3.962063 TGTTTCATCCCATAGCAATGCAT 59.038 39.130 8.35 0.00 0.00 3.96
672 695 4.340097 CCCATAGCAATGCATGGGTATATG 59.660 45.833 30.43 15.16 44.49 1.78
675 698 6.602803 CCATAGCAATGCATGGGTATATGTAA 59.397 38.462 22.34 0.00 35.32 2.41
702 725 9.377312 TGTGAAAATATATTCAACGATGACTCA 57.623 29.630 0.00 0.00 40.76 3.41
712 735 8.731275 ATTCAACGATGACTCAAATGGTATTA 57.269 30.769 0.00 0.00 34.61 0.98
768 796 4.770010 TCTATAACCTTGGGCCAAAGTTTG 59.230 41.667 31.90 22.65 31.60 2.93
776 804 1.670295 GGGCCAAAGTTTGCAAAGTTG 59.330 47.619 28.26 24.23 32.20 3.16
793 821 6.858478 GCAAAGTTGGACTTAAGAAAAGCTAG 59.142 38.462 10.09 0.00 37.47 3.42
798 826 9.220767 AGTTGGACTTAAGAAAAGCTAGTATTG 57.779 33.333 10.09 0.00 0.00 1.90
799 827 9.216117 GTTGGACTTAAGAAAAGCTAGTATTGA 57.784 33.333 10.09 0.00 0.00 2.57
800 828 9.436957 TTGGACTTAAGAAAAGCTAGTATTGAG 57.563 33.333 10.09 0.00 0.00 3.02
801 829 8.812972 TGGACTTAAGAAAAGCTAGTATTGAGA 58.187 33.333 10.09 0.00 0.00 3.27
802 830 9.825109 GGACTTAAGAAAAGCTAGTATTGAGAT 57.175 33.333 10.09 0.00 0.00 2.75
810 838 9.458374 GAAAAGCTAGTATTGAGATGAGAGTAC 57.542 37.037 0.00 0.00 0.00 2.73
822 850 6.100279 TGAGATGAGAGTACATAAAATGGGCT 59.900 38.462 0.00 0.00 33.60 5.19
837 865 0.737715 GGGCTAGTGTGCGAAGAGTG 60.738 60.000 0.00 0.00 0.00 3.51
841 869 1.468506 TAGTGTGCGAAGAGTGGCCA 61.469 55.000 0.00 0.00 0.00 5.36
852 884 1.345741 AGAGTGGCCATCATATCGTGG 59.654 52.381 9.72 0.00 38.55 4.94
859 891 1.671850 CCATCATATCGTGGCCGGTAC 60.672 57.143 1.90 1.60 31.31 3.34
912 950 2.270205 CAAGCCTCCAGCCACGAT 59.730 61.111 0.00 0.00 45.47 3.73
1027 1071 3.664107 ACGTTAATCGATCCATCCATGG 58.336 45.455 4.97 4.97 45.03 3.66
1091 1138 1.538950 GATCGGGTGACGTATACTCCC 59.461 57.143 0.56 6.74 44.69 4.30
1095 1142 2.746362 CGGGTGACGTATACTCCCTATC 59.254 54.545 10.19 1.30 38.47 2.08
1213 1286 4.516195 GCGAGGAGGAAGGACGGC 62.516 72.222 0.00 0.00 0.00 5.68
1328 1401 2.815647 AGAACGCCGCTAAGCTGC 60.816 61.111 0.00 0.00 35.51 5.25
1374 1499 2.143122 GCTCTCTCTCTCGTGATCGAT 58.857 52.381 0.00 0.00 45.21 3.59
1383 1508 4.978580 TCTCTCGTGATCGATTTTGCATAG 59.021 41.667 0.00 0.00 45.21 2.23
1386 1511 6.677913 TCTCGTGATCGATTTTGCATAGATA 58.322 36.000 0.00 0.00 45.21 1.98
1412 1540 3.057386 TCACGATTAGGTGCAAAGTCGTA 60.057 43.478 12.84 0.00 39.92 3.43
1429 1557 0.107654 GTACAGCTTTGCCGATCCCT 60.108 55.000 0.00 0.00 0.00 4.20
1458 1591 0.029035 GCTTGCTCATGCTTGATCGG 59.971 55.000 2.33 0.00 40.48 4.18
1481 1614 1.532794 GGGGTTGGGCACATGAACA 60.533 57.895 0.00 0.00 0.00 3.18
1514 1647 7.475771 TCATCTCATGATCGTCTATCTATCG 57.524 40.000 0.00 0.00 35.45 2.92
1528 1661 6.143118 GTCTATCTATCGTCACATCAAACTGC 59.857 42.308 0.00 0.00 0.00 4.40
1535 1673 4.754618 TCGTCACATCAAACTGCTAAACAT 59.245 37.500 0.00 0.00 0.00 2.71
1536 1674 4.847757 CGTCACATCAAACTGCTAAACATG 59.152 41.667 0.00 0.00 0.00 3.21
1537 1675 5.560760 CGTCACATCAAACTGCTAAACATGT 60.561 40.000 0.00 0.00 0.00 3.21
1538 1676 5.626543 GTCACATCAAACTGCTAAACATGTG 59.373 40.000 0.00 0.00 40.57 3.21
1558 1700 4.093703 TGTGTTACAAGTTCTCGTGTTTGG 59.906 41.667 0.00 0.00 37.45 3.28
1564 1706 6.445357 ACAAGTTCTCGTGTTTGGTAATTT 57.555 33.333 0.00 0.00 32.85 1.82
1598 1740 2.276994 GTCTCTCGTCAGAGCGCG 60.277 66.667 0.00 0.00 45.46 6.86
2276 2428 4.789075 TACTTCGTGCCGGCGCTC 62.789 66.667 35.04 20.32 35.36 5.03
2550 3072 4.470170 CGGACGTCGTCGATGGCA 62.470 66.667 21.51 0.00 40.62 4.92
2774 3314 1.007964 CGCGGAGATCTACCTGCTG 60.008 63.158 12.11 4.05 0.00 4.41
2876 3416 1.427809 TGCTGATGATCCCGGAAGAT 58.572 50.000 0.73 0.00 0.00 2.40
2938 3478 0.745845 GAGCCGTGCTTCCACATGAT 60.746 55.000 0.00 0.00 39.88 2.45
3102 3647 3.148084 CCGGCCGGGATAGTCATT 58.852 61.111 37.42 0.00 38.47 2.57
3103 3648 1.450211 CCGGCCGGGATAGTCATTT 59.550 57.895 37.42 0.00 38.47 2.32
3104 3649 0.602905 CCGGCCGGGATAGTCATTTC 60.603 60.000 37.42 0.00 38.47 2.17
3105 3650 0.393077 CGGCCGGGATAGTCATTTCT 59.607 55.000 20.10 0.00 0.00 2.52
3106 3651 1.605712 CGGCCGGGATAGTCATTTCTC 60.606 57.143 20.10 0.00 0.00 2.87
3107 3652 1.416401 GGCCGGGATAGTCATTTCTCA 59.584 52.381 2.18 0.00 0.00 3.27
3108 3653 2.158813 GGCCGGGATAGTCATTTCTCAA 60.159 50.000 2.18 0.00 0.00 3.02
3109 3654 3.541632 GCCGGGATAGTCATTTCTCAAA 58.458 45.455 2.18 0.00 0.00 2.69
3110 3655 4.137543 GCCGGGATAGTCATTTCTCAAAT 58.862 43.478 2.18 0.00 0.00 2.32
3111 3656 4.580580 GCCGGGATAGTCATTTCTCAAATT 59.419 41.667 2.18 0.00 0.00 1.82
3112 3657 5.763204 GCCGGGATAGTCATTTCTCAAATTA 59.237 40.000 2.18 0.00 0.00 1.40
3113 3658 6.073003 GCCGGGATAGTCATTTCTCAAATTAG 60.073 42.308 2.18 0.00 0.00 1.73
3114 3659 6.992715 CCGGGATAGTCATTTCTCAAATTAGT 59.007 38.462 0.00 0.00 0.00 2.24
3115 3660 8.148351 CCGGGATAGTCATTTCTCAAATTAGTA 58.852 37.037 0.00 0.00 0.00 1.82
3116 3661 9.542462 CGGGATAGTCATTTCTCAAATTAGTAA 57.458 33.333 0.00 0.00 0.00 2.24
3157 3702 8.779354 ATTTTGCTTCTAATTAAGAGTCGACT 57.221 30.769 20.18 20.18 35.05 4.18
3270 3820 2.121291 TTGTCCACAACAGTTGCAGA 57.879 45.000 13.56 7.44 39.58 4.26
3415 3970 4.675063 ATCCCTGTCCTTGTTTATTGGT 57.325 40.909 0.00 0.00 0.00 3.67
3440 3995 6.041069 TCCCCTTCGTATTTGTGTCAATTTTT 59.959 34.615 0.00 0.00 0.00 1.94
3621 4177 8.950007 AAGGGGACTAATAAATCAAGACAAAA 57.050 30.769 0.00 0.00 42.68 2.44
3622 4178 8.950007 AGGGGACTAATAAATCAAGACAAAAA 57.050 30.769 0.00 0.00 40.61 1.94
3623 4179 9.025041 AGGGGACTAATAAATCAAGACAAAAAG 57.975 33.333 0.00 0.00 40.61 2.27
3624 4180 8.803235 GGGGACTAATAAATCAAGACAAAAAGT 58.197 33.333 0.00 0.00 0.00 2.66
3692 4258 1.740332 TATTCGATCGAGCCCGCCAA 61.740 55.000 18.54 0.64 35.37 4.52
3698 4264 3.864686 CGAGCCCGCCAACATTCG 61.865 66.667 0.00 0.00 0.00 3.34
3700 4266 2.282180 AGCCCGCCAACATTCGTT 60.282 55.556 0.00 0.00 35.01 3.85
3706 4272 2.286772 CCCGCCAACATTCGTTAATAGC 60.287 50.000 0.00 0.00 32.75 2.97
3708 4274 3.303132 CCGCCAACATTCGTTAATAGCTC 60.303 47.826 0.00 0.00 32.75 4.09
3717 4283 4.494350 TCGTTAATAGCTCGACCCATAC 57.506 45.455 0.00 0.00 0.00 2.39
3731 4297 5.104941 TCGACCCATACAGAGAAAATCACAT 60.105 40.000 0.00 0.00 0.00 3.21
3754 4320 1.886886 TCGTCCCTTAACTTGTTGGC 58.113 50.000 0.00 0.00 0.00 4.52
3755 4321 1.141254 TCGTCCCTTAACTTGTTGGCA 59.859 47.619 0.00 0.00 0.00 4.92
3758 4324 2.034179 GTCCCTTAACTTGTTGGCACAC 59.966 50.000 0.00 0.00 39.29 3.82
3762 4328 3.880490 CCTTAACTTGTTGGCACACTACA 59.120 43.478 0.00 0.00 39.29 2.74
3763 4329 4.261031 CCTTAACTTGTTGGCACACTACAC 60.261 45.833 0.00 0.00 39.29 2.90
3766 4350 2.618241 ACTTGTTGGCACACTACACATG 59.382 45.455 0.00 0.00 39.29 3.21
3790 4374 3.514309 GCTCCTGTACCTGAAAACCTCTA 59.486 47.826 0.00 0.00 0.00 2.43
3797 4381 6.400568 TGTACCTGAAAACCTCTAAATACGG 58.599 40.000 0.00 0.00 0.00 4.02
3804 4388 7.844009 TGAAAACCTCTAAATACGGTCACTAT 58.156 34.615 0.00 0.00 0.00 2.12
3805 4389 8.970020 TGAAAACCTCTAAATACGGTCACTATA 58.030 33.333 0.00 0.00 0.00 1.31
3813 4397 9.926158 TCTAAATACGGTCACTATACACAAAAA 57.074 29.630 0.00 0.00 0.00 1.94
3821 4405 9.910511 CGGTCACTATACACAAAAATATGTAAC 57.089 33.333 0.00 0.00 35.05 2.50
3835 4419 3.637911 ATGTAACATTTGCGGTCCCTA 57.362 42.857 0.00 0.00 0.00 3.53
3839 4423 5.686753 TGTAACATTTGCGGTCCCTAATAT 58.313 37.500 0.00 0.00 0.00 1.28
3840 4424 5.529430 TGTAACATTTGCGGTCCCTAATATG 59.471 40.000 0.00 0.00 0.00 1.78
3841 4425 3.486383 ACATTTGCGGTCCCTAATATGG 58.514 45.455 0.00 0.00 0.00 2.74
3842 4426 3.117663 ACATTTGCGGTCCCTAATATGGT 60.118 43.478 0.00 0.00 0.00 3.55
3843 4427 2.922740 TTGCGGTCCCTAATATGGTC 57.077 50.000 0.00 0.00 0.00 4.02
3844 4428 1.053424 TGCGGTCCCTAATATGGTCC 58.947 55.000 0.00 0.00 0.00 4.46
3845 4429 0.323957 GCGGTCCCTAATATGGTCCC 59.676 60.000 0.00 0.00 0.00 4.46
3846 4430 2.025636 CGGTCCCTAATATGGTCCCT 57.974 55.000 0.00 0.00 0.00 4.20
3847 4431 2.824303 GCGGTCCCTAATATGGTCCCTA 60.824 54.545 0.00 0.00 0.00 3.53
3848 4432 3.513517 CGGTCCCTAATATGGTCCCTAA 58.486 50.000 0.00 0.00 0.00 2.69
3849 4433 4.101856 CGGTCCCTAATATGGTCCCTAAT 58.898 47.826 0.00 0.00 0.00 1.73
3850 4434 5.274822 CGGTCCCTAATATGGTCCCTAATA 58.725 45.833 0.00 0.00 0.00 0.98
3851 4435 5.903589 CGGTCCCTAATATGGTCCCTAATAT 59.096 44.000 0.00 0.00 0.00 1.28
3874 4458 0.315568 CCCTCATACGCTCTAGCACC 59.684 60.000 2.44 0.00 42.21 5.01
3905 4489 0.664166 GTGTGGCCTCGCATGTTTTG 60.664 55.000 13.37 0.00 35.69 2.44
3930 4514 0.115745 AGACCCCTTGTACGGAAGGA 59.884 55.000 12.48 0.00 44.87 3.36
3940 4524 2.506438 CGGAAGGAAGCCGTCGTC 60.506 66.667 0.00 0.00 43.66 4.20
3949 4533 4.988486 GCCGTCGTCGTTGTCGGT 62.988 66.667 16.56 0.00 44.07 4.69
3973 4557 2.809174 TGTCGCCGCTCATTGTCG 60.809 61.111 0.00 0.00 0.00 4.35
4007 4591 2.743718 CACCTCGCCACACTTCCT 59.256 61.111 0.00 0.00 0.00 3.36
4028 4612 5.981315 TCCTATTTCTTCGTAGGTTATTGCG 59.019 40.000 0.00 0.00 38.84 4.85
4029 4613 4.531659 ATTTCTTCGTAGGTTATTGCGC 57.468 40.909 0.00 0.00 0.00 6.09
4037 4621 0.035056 AGGTTATTGCGCTTGCCTCT 60.035 50.000 9.73 0.00 38.03 3.69
4063 4647 0.833287 CTCATTCCATGACGGGGACT 59.167 55.000 0.00 0.00 35.06 3.85
4064 4648 1.210478 CTCATTCCATGACGGGGACTT 59.790 52.381 0.00 0.00 35.06 3.01
4068 4652 1.131303 TCCATGACGGGGACTTGGTT 61.131 55.000 0.00 0.00 35.17 3.67
4072 4656 0.395312 TGACGGGGACTTGGTTCTTC 59.605 55.000 0.00 0.00 0.00 2.87
4083 4667 2.234300 TGGTTCTTCTGGACAACGTC 57.766 50.000 0.00 0.00 0.00 4.34
4084 4668 1.483004 TGGTTCTTCTGGACAACGTCA 59.517 47.619 0.00 0.00 33.68 4.35
4087 4671 3.564225 GGTTCTTCTGGACAACGTCAAAT 59.436 43.478 0.00 0.00 33.68 2.32
4088 4672 4.036380 GGTTCTTCTGGACAACGTCAAATT 59.964 41.667 0.00 0.00 33.68 1.82
4089 4673 4.811555 TCTTCTGGACAACGTCAAATTG 57.188 40.909 0.00 0.00 33.68 2.32
4112 4696 2.359478 ATCGACGTGGTTTGGGCC 60.359 61.111 0.00 0.00 0.00 5.80
4134 4718 2.225791 GATTTCACCCGCCTTTGCCC 62.226 60.000 0.00 0.00 0.00 5.36
4140 4724 1.605165 CCCGCCTTTGCCCAAACTA 60.605 57.895 0.00 0.00 0.00 2.24
4141 4725 1.182385 CCCGCCTTTGCCCAAACTAA 61.182 55.000 0.00 0.00 0.00 2.24
4154 4738 5.105146 TGCCCAAACTAAACAGTGAAATTGT 60.105 36.000 0.00 0.00 39.02 2.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 2.600470 GTGGTGGGAGCCAAACCC 60.600 66.667 7.82 0.00 46.87 4.11
11 12 2.197324 TGTGGTGGGAGCCAAACC 59.803 61.111 4.19 4.19 40.68 3.27
12 13 2.551912 CGTGTGGTGGGAGCCAAAC 61.552 63.158 0.00 0.00 42.07 2.93
13 14 2.203280 CGTGTGGTGGGAGCCAAA 60.203 61.111 0.00 0.00 40.68 3.28
14 15 3.484806 ACGTGTGGTGGGAGCCAA 61.485 61.111 0.00 0.00 40.68 4.52
15 16 4.248842 CACGTGTGGTGGGAGCCA 62.249 66.667 7.58 0.00 43.16 4.75
29 30 3.039588 AACGCTAACGCCCACACG 61.040 61.111 0.00 0.00 45.53 4.49
30 31 2.166584 GACAACGCTAACGCCCACAC 62.167 60.000 0.00 0.00 45.53 3.82
31 32 1.957186 GACAACGCTAACGCCCACA 60.957 57.895 0.00 0.00 45.53 4.17
32 33 2.674084 GGACAACGCTAACGCCCAC 61.674 63.158 0.00 0.00 45.53 4.61
33 34 2.357760 GGACAACGCTAACGCCCA 60.358 61.111 0.00 0.00 45.53 5.36
34 35 1.962306 TTGGACAACGCTAACGCCC 60.962 57.895 0.00 0.00 45.53 6.13
35 36 1.205820 GTTGGACAACGCTAACGCC 59.794 57.895 0.00 0.00 45.53 5.68
36 37 0.515564 ATGTTGGACAACGCTAACGC 59.484 50.000 10.27 0.00 45.53 4.84
37 38 2.961522 AATGTTGGACAACGCTAACG 57.038 45.000 10.27 0.00 43.94 3.18
38 39 8.178964 TCATAATAAATGTTGGACAACGCTAAC 58.821 33.333 10.27 0.00 43.94 2.34
39 40 8.270080 TCATAATAAATGTTGGACAACGCTAA 57.730 30.769 10.27 0.00 43.94 3.09
40 41 7.851387 TCATAATAAATGTTGGACAACGCTA 57.149 32.000 10.27 2.80 43.94 4.26
41 42 6.751514 TCATAATAAATGTTGGACAACGCT 57.248 33.333 10.27 0.00 43.94 5.07
42 43 9.117145 CATATCATAATAAATGTTGGACAACGC 57.883 33.333 10.27 0.00 43.94 4.84
43 44 9.611284 CCATATCATAATAAATGTTGGACAACG 57.389 33.333 10.27 0.00 43.94 4.10
81 82 6.287589 TGAAGAAAGAGAGGGTTGAGTATC 57.712 41.667 0.00 0.00 0.00 2.24
82 83 6.882768 ATGAAGAAAGAGAGGGTTGAGTAT 57.117 37.500 0.00 0.00 0.00 2.12
83 84 6.688073 AATGAAGAAAGAGAGGGTTGAGTA 57.312 37.500 0.00 0.00 0.00 2.59
84 85 5.574970 AATGAAGAAAGAGAGGGTTGAGT 57.425 39.130 0.00 0.00 0.00 3.41
85 86 8.572855 AATAAATGAAGAAAGAGAGGGTTGAG 57.427 34.615 0.00 0.00 0.00 3.02
86 87 8.940397 AAATAAATGAAGAAAGAGAGGGTTGA 57.060 30.769 0.00 0.00 0.00 3.18
87 88 9.018582 AGAAATAAATGAAGAAAGAGAGGGTTG 57.981 33.333 0.00 0.00 0.00 3.77
89 90 9.898152 CTAGAAATAAATGAAGAAAGAGAGGGT 57.102 33.333 0.00 0.00 0.00 4.34
90 91 9.336171 CCTAGAAATAAATGAAGAAAGAGAGGG 57.664 37.037 0.00 0.00 0.00 4.30
95 96 9.449719 GGTGTCCTAGAAATAAATGAAGAAAGA 57.550 33.333 0.00 0.00 0.00 2.52
96 97 9.454859 AGGTGTCCTAGAAATAAATGAAGAAAG 57.545 33.333 0.00 0.00 28.47 2.62
97 98 9.807921 AAGGTGTCCTAGAAATAAATGAAGAAA 57.192 29.630 0.00 0.00 31.13 2.52
108 109 9.533831 ACAATTTTGATAAGGTGTCCTAGAAAT 57.466 29.630 0.00 0.00 31.13 2.17
109 110 8.934023 ACAATTTTGATAAGGTGTCCTAGAAA 57.066 30.769 0.00 0.00 31.13 2.52
110 111 8.383175 AGACAATTTTGATAAGGTGTCCTAGAA 58.617 33.333 0.00 0.00 36.82 2.10
111 112 7.918076 AGACAATTTTGATAAGGTGTCCTAGA 58.082 34.615 0.00 0.00 36.82 2.43
112 113 9.319143 CTAGACAATTTTGATAAGGTGTCCTAG 57.681 37.037 0.00 0.00 36.82 3.02
113 114 8.822805 ACTAGACAATTTTGATAAGGTGTCCTA 58.177 33.333 0.00 0.00 36.82 2.94
114 115 7.690256 ACTAGACAATTTTGATAAGGTGTCCT 58.310 34.615 0.00 0.00 36.82 3.85
115 116 7.923414 ACTAGACAATTTTGATAAGGTGTCC 57.077 36.000 0.00 0.00 36.82 4.02
116 117 8.237267 CCAACTAGACAATTTTGATAAGGTGTC 58.763 37.037 0.00 0.00 36.48 3.67
117 118 7.309194 GCCAACTAGACAATTTTGATAAGGTGT 60.309 37.037 0.00 0.00 0.00 4.16
118 119 7.029563 GCCAACTAGACAATTTTGATAAGGTG 58.970 38.462 0.00 0.61 0.00 4.00
119 120 6.719370 TGCCAACTAGACAATTTTGATAAGGT 59.281 34.615 0.00 0.00 0.00 3.50
120 121 7.156876 TGCCAACTAGACAATTTTGATAAGG 57.843 36.000 0.00 0.00 0.00 2.69
121 122 7.221452 GCATGCCAACTAGACAATTTTGATAAG 59.779 37.037 6.36 0.00 0.00 1.73
122 123 7.035004 GCATGCCAACTAGACAATTTTGATAA 58.965 34.615 6.36 0.00 0.00 1.75
123 124 6.152492 TGCATGCCAACTAGACAATTTTGATA 59.848 34.615 16.68 0.00 0.00 2.15
124 125 5.047164 TGCATGCCAACTAGACAATTTTGAT 60.047 36.000 16.68 0.00 0.00 2.57
125 126 4.280425 TGCATGCCAACTAGACAATTTTGA 59.720 37.500 16.68 0.00 0.00 2.69
126 127 4.558178 TGCATGCCAACTAGACAATTTTG 58.442 39.130 16.68 0.00 0.00 2.44
127 128 4.870123 TGCATGCCAACTAGACAATTTT 57.130 36.364 16.68 0.00 0.00 1.82
128 129 4.463539 TCATGCATGCCAACTAGACAATTT 59.536 37.500 22.25 0.00 0.00 1.82
129 130 4.018490 TCATGCATGCCAACTAGACAATT 58.982 39.130 22.25 0.00 0.00 2.32
130 131 3.623703 TCATGCATGCCAACTAGACAAT 58.376 40.909 22.25 0.00 0.00 2.71
131 132 3.070476 TCATGCATGCCAACTAGACAA 57.930 42.857 22.25 0.00 0.00 3.18
132 133 2.785540 TCATGCATGCCAACTAGACA 57.214 45.000 22.25 0.00 0.00 3.41
133 134 4.384056 AGTATCATGCATGCCAACTAGAC 58.616 43.478 22.25 10.78 0.00 2.59
134 135 4.694760 AGTATCATGCATGCCAACTAGA 57.305 40.909 22.25 2.12 0.00 2.43
135 136 4.391216 GCTAGTATCATGCATGCCAACTAG 59.609 45.833 32.38 32.38 37.27 2.57
136 137 4.040829 AGCTAGTATCATGCATGCCAACTA 59.959 41.667 22.25 22.70 0.00 2.24
137 138 3.144506 GCTAGTATCATGCATGCCAACT 58.855 45.455 22.25 22.78 0.00 3.16
138 139 3.144506 AGCTAGTATCATGCATGCCAAC 58.855 45.455 22.25 17.59 0.00 3.77
139 140 3.497103 AGCTAGTATCATGCATGCCAA 57.503 42.857 22.25 5.34 0.00 4.52
140 141 4.223477 TCATAGCTAGTATCATGCATGCCA 59.777 41.667 22.25 8.84 0.00 4.92
141 142 4.763073 TCATAGCTAGTATCATGCATGCC 58.237 43.478 22.25 11.72 0.00 4.40
142 143 5.519566 GTCTCATAGCTAGTATCATGCATGC 59.480 44.000 22.25 11.82 0.00 4.06
143 144 6.865411 AGTCTCATAGCTAGTATCATGCATG 58.135 40.000 21.07 21.07 0.00 4.06
144 145 8.465999 GTTAGTCTCATAGCTAGTATCATGCAT 58.534 37.037 0.00 0.00 0.00 3.96
145 146 7.448469 TGTTAGTCTCATAGCTAGTATCATGCA 59.552 37.037 0.00 0.00 0.00 3.96
146 147 7.821652 TGTTAGTCTCATAGCTAGTATCATGC 58.178 38.462 0.00 0.00 0.00 4.06
150 151 9.976255 CGTAATGTTAGTCTCATAGCTAGTATC 57.024 37.037 0.00 0.00 0.00 2.24
151 152 8.948145 CCGTAATGTTAGTCTCATAGCTAGTAT 58.052 37.037 0.00 0.00 0.00 2.12
152 153 7.094890 GCCGTAATGTTAGTCTCATAGCTAGTA 60.095 40.741 0.00 0.00 0.00 1.82
153 154 6.294065 GCCGTAATGTTAGTCTCATAGCTAGT 60.294 42.308 0.00 0.00 0.00 2.57
154 155 6.087522 GCCGTAATGTTAGTCTCATAGCTAG 58.912 44.000 0.00 0.00 0.00 3.42
155 156 5.048224 GGCCGTAATGTTAGTCTCATAGCTA 60.048 44.000 0.00 0.00 0.00 3.32
156 157 4.262079 GGCCGTAATGTTAGTCTCATAGCT 60.262 45.833 0.00 0.00 0.00 3.32
157 158 3.988517 GGCCGTAATGTTAGTCTCATAGC 59.011 47.826 0.00 0.00 0.00 2.97
158 159 5.196341 TGGCCGTAATGTTAGTCTCATAG 57.804 43.478 0.00 0.00 0.00 2.23
159 160 4.500887 GCTGGCCGTAATGTTAGTCTCATA 60.501 45.833 0.00 0.00 0.00 2.15
160 161 3.741388 GCTGGCCGTAATGTTAGTCTCAT 60.741 47.826 0.00 0.00 0.00 2.90
161 162 2.418197 GCTGGCCGTAATGTTAGTCTCA 60.418 50.000 0.00 0.00 0.00 3.27
162 163 2.202566 GCTGGCCGTAATGTTAGTCTC 58.797 52.381 0.00 0.00 0.00 3.36
163 164 1.134491 GGCTGGCCGTAATGTTAGTCT 60.134 52.381 0.00 0.00 0.00 3.24
164 165 1.134491 AGGCTGGCCGTAATGTTAGTC 60.134 52.381 5.93 0.00 41.95 2.59
165 166 0.909623 AGGCTGGCCGTAATGTTAGT 59.090 50.000 5.93 0.00 41.95 2.24
166 167 2.902705 TAGGCTGGCCGTAATGTTAG 57.097 50.000 5.93 0.00 41.95 2.34
167 168 3.849563 ATTAGGCTGGCCGTAATGTTA 57.150 42.857 5.93 0.00 41.95 2.41
168 169 2.729028 ATTAGGCTGGCCGTAATGTT 57.271 45.000 5.93 0.00 41.95 2.71
169 170 2.687935 CAAATTAGGCTGGCCGTAATGT 59.312 45.455 5.93 3.95 41.95 2.71
170 171 2.687935 ACAAATTAGGCTGGCCGTAATG 59.312 45.455 5.93 6.05 41.95 1.90
171 172 2.949644 GACAAATTAGGCTGGCCGTAAT 59.050 45.455 5.93 7.90 41.95 1.89
172 173 2.290387 TGACAAATTAGGCTGGCCGTAA 60.290 45.455 5.93 6.08 41.95 3.18
173 174 1.279558 TGACAAATTAGGCTGGCCGTA 59.720 47.619 5.93 0.00 41.95 4.02
174 175 0.037590 TGACAAATTAGGCTGGCCGT 59.962 50.000 5.93 0.00 41.95 5.68
175 176 0.734889 CTGACAAATTAGGCTGGCCG 59.265 55.000 5.93 0.00 41.95 6.13
176 177 1.745653 GTCTGACAAATTAGGCTGGCC 59.254 52.381 3.00 3.00 0.00 5.36
177 178 2.436417 TGTCTGACAAATTAGGCTGGC 58.564 47.619 8.27 0.00 0.00 4.85
178 179 5.649782 AATTGTCTGACAAATTAGGCTGG 57.350 39.130 25.26 0.00 41.96 4.85
179 180 7.820648 AGTTAATTGTCTGACAAATTAGGCTG 58.179 34.615 25.26 0.00 41.96 4.85
180 181 9.167311 CTAGTTAATTGTCTGACAAATTAGGCT 57.833 33.333 25.26 21.33 41.96 4.58
181 182 8.398665 CCTAGTTAATTGTCTGACAAATTAGGC 58.601 37.037 25.26 17.43 41.96 3.93
182 183 8.398665 GCCTAGTTAATTGTCTGACAAATTAGG 58.601 37.037 25.26 24.49 41.96 2.69
189 190 5.012664 TGGAAGCCTAGTTAATTGTCTGACA 59.987 40.000 6.36 6.36 0.00 3.58
211 212 9.961265 TGAGTCTTTTTATACGTGTATAGATGG 57.039 33.333 0.00 0.00 30.53 3.51
221 222 5.766174 TGCCCTTTTGAGTCTTTTTATACGT 59.234 36.000 0.00 0.00 0.00 3.57
251 252 5.059833 CAGGTTTGATGGCCTAGATTAGTC 58.940 45.833 3.32 0.00 33.07 2.59
260 261 2.905415 TTGATCAGGTTTGATGGCCT 57.095 45.000 3.32 0.00 44.01 5.19
273 274 2.039746 ACCGGAGTTGTTGGATTGATCA 59.960 45.455 9.46 0.00 0.00 2.92
355 356 8.769891 TGTGTGTTAATTATATGATTACGCTGG 58.230 33.333 0.00 0.00 0.00 4.85
434 437 8.195436 ACTAGTAAATGACTACGTACAATGCAT 58.805 33.333 0.00 0.00 39.81 3.96
734 757 9.138596 GGCCCAAGGTTATAGAAAAATGTATTA 57.861 33.333 0.00 0.00 0.00 0.98
768 796 5.592054 AGCTTTTCTTAAGTCCAACTTTGC 58.408 37.500 1.63 0.00 39.51 3.68
776 804 9.825109 ATCTCAATACTAGCTTTTCTTAAGTCC 57.175 33.333 1.63 0.00 0.00 3.85
798 826 6.529220 AGCCCATTTTATGTACTCTCATCTC 58.471 40.000 0.00 0.00 0.00 2.75
799 827 6.506538 AGCCCATTTTATGTACTCTCATCT 57.493 37.500 0.00 0.00 0.00 2.90
800 828 7.386299 CACTAGCCCATTTTATGTACTCTCATC 59.614 40.741 0.00 0.00 0.00 2.92
801 829 7.147479 ACACTAGCCCATTTTATGTACTCTCAT 60.147 37.037 0.00 0.00 0.00 2.90
802 830 6.156256 ACACTAGCCCATTTTATGTACTCTCA 59.844 38.462 0.00 0.00 0.00 3.27
810 838 2.942376 TCGCACACTAGCCCATTTTATG 59.058 45.455 0.00 0.00 0.00 1.90
818 846 0.737715 CACTCTTCGCACACTAGCCC 60.738 60.000 0.00 0.00 0.00 5.19
822 850 1.292223 GGCCACTCTTCGCACACTA 59.708 57.895 0.00 0.00 0.00 2.74
841 869 1.544691 GAGTACCGGCCACGATATGAT 59.455 52.381 0.00 0.00 44.60 2.45
852 884 0.594602 GTGTTTTTGGGAGTACCGGC 59.405 55.000 0.00 0.00 44.64 6.13
859 891 1.657181 GCGCACGTGTTTTTGGGAG 60.657 57.895 18.38 0.00 0.00 4.30
883 915 1.383523 GAGGCTTGGAACCAGCATAC 58.616 55.000 13.80 4.82 0.00 2.39
884 916 0.255890 GGAGGCTTGGAACCAGCATA 59.744 55.000 13.80 0.00 0.00 3.14
912 950 2.046988 CAGCATGTCGTGGGAGCA 60.047 61.111 0.00 0.00 0.00 4.26
1045 1089 0.519961 CGAAAGCCCCACGGTTTTAG 59.480 55.000 0.00 0.00 42.14 1.85
1091 1138 3.300388 TCTCCCTAGCACAACCAGATAG 58.700 50.000 0.00 0.00 0.00 2.08
1095 1142 1.833630 TCATCTCCCTAGCACAACCAG 59.166 52.381 0.00 0.00 0.00 4.00
1193 1266 4.516195 GTCCTTCCTCCTCGCCGC 62.516 72.222 0.00 0.00 0.00 6.53
1194 1267 4.194720 CGTCCTTCCTCCTCGCCG 62.195 72.222 0.00 0.00 0.00 6.46
1195 1268 3.839432 CCGTCCTTCCTCCTCGCC 61.839 72.222 0.00 0.00 0.00 5.54
1196 1269 4.516195 GCCGTCCTTCCTCCTCGC 62.516 72.222 0.00 0.00 0.00 5.03
1197 1270 2.427245 ATGCCGTCCTTCCTCCTCG 61.427 63.158 0.00 0.00 0.00 4.63
1198 1271 1.144936 CATGCCGTCCTTCCTCCTC 59.855 63.158 0.00 0.00 0.00 3.71
1199 1272 2.370445 CCATGCCGTCCTTCCTCCT 61.370 63.158 0.00 0.00 0.00 3.69
1200 1273 2.190578 CCATGCCGTCCTTCCTCC 59.809 66.667 0.00 0.00 0.00 4.30
1201 1274 2.190578 CCCATGCCGTCCTTCCTC 59.809 66.667 0.00 0.00 0.00 3.71
1332 1405 1.904771 CTTGTACCTCCGCCCATGA 59.095 57.895 0.00 0.00 0.00 3.07
1339 1412 0.247736 AGAGCTTGCTTGTACCTCCG 59.752 55.000 0.00 0.00 0.00 4.63
1374 1499 9.639601 CCTAATCGTGAGTATATCTATGCAAAA 57.360 33.333 0.00 0.00 0.00 2.44
1383 1508 6.924060 ACTTTGCACCTAATCGTGAGTATATC 59.076 38.462 0.00 0.00 35.68 1.63
1386 1511 5.086104 ACTTTGCACCTAATCGTGAGTAT 57.914 39.130 0.00 0.00 35.68 2.12
1412 1540 0.107654 GTAGGGATCGGCAAAGCTGT 60.108 55.000 0.00 0.00 36.18 4.40
1429 1557 2.030893 GCATGAGCAAGCTTGTGTTGTA 60.031 45.455 26.55 8.97 41.58 2.41
1458 1591 0.249955 CATGTGCCCAACCCCAAATC 59.750 55.000 0.00 0.00 0.00 2.17
1502 1635 6.358294 CAGTTTGATGTGACGATAGATAGACG 59.642 42.308 0.00 0.00 41.38 4.18
1507 1640 5.016051 AGCAGTTTGATGTGACGATAGAT 57.984 39.130 0.00 0.00 41.38 1.98
1508 1641 4.456280 AGCAGTTTGATGTGACGATAGA 57.544 40.909 0.00 0.00 41.38 1.98
1510 1643 5.929415 TGTTTAGCAGTTTGATGTGACGATA 59.071 36.000 0.00 0.00 0.00 2.92
1511 1644 4.754618 TGTTTAGCAGTTTGATGTGACGAT 59.245 37.500 0.00 0.00 0.00 3.73
1512 1645 4.123506 TGTTTAGCAGTTTGATGTGACGA 58.876 39.130 0.00 0.00 0.00 4.20
1513 1646 4.466567 TGTTTAGCAGTTTGATGTGACG 57.533 40.909 0.00 0.00 0.00 4.35
1514 1647 5.626543 CACATGTTTAGCAGTTTGATGTGAC 59.373 40.000 0.00 0.00 39.15 3.67
1528 1661 7.063456 CACGAGAACTTGTAACACATGTTTAG 58.937 38.462 1.98 1.88 43.59 1.85
1535 1673 4.093703 CCAAACACGAGAACTTGTAACACA 59.906 41.667 0.00 0.00 0.00 3.72
1536 1674 4.093850 ACCAAACACGAGAACTTGTAACAC 59.906 41.667 0.00 0.00 0.00 3.32
1537 1675 4.255301 ACCAAACACGAGAACTTGTAACA 58.745 39.130 0.00 0.00 0.00 2.41
1538 1676 4.870221 ACCAAACACGAGAACTTGTAAC 57.130 40.909 0.00 0.00 0.00 2.50
2141 2293 1.580942 GTGCAGGTACACGTACGGA 59.419 57.895 21.06 1.01 36.94 4.69
2276 2428 0.866061 CGAACTCGGCCATGTCGTAG 60.866 60.000 2.24 5.19 35.37 3.51
2348 2502 3.324108 TGGAACAGGTACCGGCCC 61.324 66.667 12.40 13.60 0.00 5.80
2477 2999 1.870901 GCCGTACATGTCGTCGACC 60.871 63.158 22.05 5.77 0.00 4.79
2575 3115 3.969250 GATTTGGAGCCGCCGTGGA 62.969 63.158 0.88 0.00 42.00 4.02
2650 3190 2.277756 CCGCGTGCTCGTAGTACC 60.278 66.667 4.92 0.00 39.49 3.34
2774 3314 1.803519 CAGCACGTCGGAGAAGCTC 60.804 63.158 0.00 0.00 40.38 4.09
2819 3359 1.150567 CGAGGCTGCTGCTCATGTAC 61.151 60.000 15.64 0.00 39.59 2.90
2938 3478 4.408821 GGCACTCCACATCGGGCA 62.409 66.667 0.00 0.00 34.36 5.36
3088 3633 2.910688 TGAGAAATGACTATCCCGGC 57.089 50.000 0.00 0.00 0.00 6.13
3089 3634 6.992715 ACTAATTTGAGAAATGACTATCCCGG 59.007 38.462 0.00 0.00 0.00 5.73
3090 3635 9.542462 TTACTAATTTGAGAAATGACTATCCCG 57.458 33.333 0.00 0.00 0.00 5.14
3130 3675 9.267096 GTCGACTCTTAATTAGAAGCAAAATTG 57.733 33.333 8.70 0.00 30.91 2.32
3131 3676 9.220767 AGTCGACTCTTAATTAGAAGCAAAATT 57.779 29.630 13.58 0.00 30.91 1.82
3132 3677 8.660373 CAGTCGACTCTTAATTAGAAGCAAAAT 58.340 33.333 16.96 0.00 30.91 1.82
3133 3678 7.870954 TCAGTCGACTCTTAATTAGAAGCAAAA 59.129 33.333 16.96 0.00 30.91 2.44
3134 3679 7.375834 TCAGTCGACTCTTAATTAGAAGCAAA 58.624 34.615 16.96 0.00 30.91 3.68
3135 3680 6.920817 TCAGTCGACTCTTAATTAGAAGCAA 58.079 36.000 16.96 0.00 30.91 3.91
3136 3681 6.510879 TCAGTCGACTCTTAATTAGAAGCA 57.489 37.500 16.96 0.00 30.91 3.91
3137 3682 7.542824 AGTTTCAGTCGACTCTTAATTAGAAGC 59.457 37.037 16.96 14.65 30.91 3.86
3138 3683 8.973835 AGTTTCAGTCGACTCTTAATTAGAAG 57.026 34.615 16.96 0.00 30.91 2.85
3139 3684 9.760077 AAAGTTTCAGTCGACTCTTAATTAGAA 57.240 29.630 16.96 10.71 30.91 2.10
3140 3685 9.760077 AAAAGTTTCAGTCGACTCTTAATTAGA 57.240 29.630 16.96 4.35 0.00 2.10
3141 3686 9.798885 CAAAAGTTTCAGTCGACTCTTAATTAG 57.201 33.333 16.96 1.60 0.00 1.73
3142 3687 9.321562 ACAAAAGTTTCAGTCGACTCTTAATTA 57.678 29.630 16.96 0.00 0.00 1.40
3143 3688 8.209917 ACAAAAGTTTCAGTCGACTCTTAATT 57.790 30.769 16.96 6.17 0.00 1.40
3144 3689 7.787725 ACAAAAGTTTCAGTCGACTCTTAAT 57.212 32.000 16.96 6.18 0.00 1.40
3145 3690 7.118680 ACAACAAAAGTTTCAGTCGACTCTTAA 59.881 33.333 16.96 7.76 0.00 1.85
3146 3691 6.592607 ACAACAAAAGTTTCAGTCGACTCTTA 59.407 34.615 16.96 0.86 0.00 2.10
3147 3692 5.411669 ACAACAAAAGTTTCAGTCGACTCTT 59.588 36.000 16.96 13.12 0.00 2.85
3148 3693 4.935808 ACAACAAAAGTTTCAGTCGACTCT 59.064 37.500 16.96 6.92 0.00 3.24
3149 3694 5.217895 ACAACAAAAGTTTCAGTCGACTC 57.782 39.130 16.96 4.27 0.00 3.36
3150 3695 5.220605 GCTACAACAAAAGTTTCAGTCGACT 60.221 40.000 13.58 13.58 0.00 4.18
3151 3696 4.962151 GCTACAACAAAAGTTTCAGTCGAC 59.038 41.667 7.70 7.70 0.00 4.20
3152 3697 4.873827 AGCTACAACAAAAGTTTCAGTCGA 59.126 37.500 0.00 0.00 0.00 4.20
3157 3702 9.134734 CAAAAACTAGCTACAACAAAAGTTTCA 57.865 29.630 7.29 0.00 36.45 2.69
3415 3970 3.773418 TTGACACAAATACGAAGGGGA 57.227 42.857 0.00 0.00 0.00 4.81
3596 4152 8.950007 TTTTGTCTTGATTTATTAGTCCCCTT 57.050 30.769 0.00 0.00 0.00 3.95
3611 4167 3.064271 GTGCACGGTACTTTTTGTCTTGA 59.936 43.478 0.00 0.00 0.00 3.02
3619 4175 1.937899 GTCAGTGTGCACGGTACTTTT 59.062 47.619 13.13 0.00 36.20 2.27
3621 4177 0.462375 TGTCAGTGTGCACGGTACTT 59.538 50.000 13.13 0.00 36.20 2.24
3622 4178 0.462375 TTGTCAGTGTGCACGGTACT 59.538 50.000 13.13 7.46 36.20 2.73
3623 4179 1.459592 GATTGTCAGTGTGCACGGTAC 59.540 52.381 13.13 4.91 36.20 3.34
3624 4180 1.343142 AGATTGTCAGTGTGCACGGTA 59.657 47.619 13.13 0.00 36.20 4.02
3626 4182 2.078849 TAGATTGTCAGTGTGCACGG 57.921 50.000 13.13 4.42 36.20 4.94
3627 4183 2.995939 ACATAGATTGTCAGTGTGCACG 59.004 45.455 13.13 0.00 30.89 5.34
3670 4228 0.507358 GCGGGCTCGATCGAATAAAC 59.493 55.000 19.92 5.36 39.00 2.01
3673 4231 1.740332 TTGGCGGGCTCGATCGAATA 61.740 55.000 19.92 0.00 39.00 1.75
3674 4232 3.088941 TTGGCGGGCTCGATCGAAT 62.089 57.895 19.92 0.00 39.00 3.34
3677 4235 4.812476 TGTTGGCGGGCTCGATCG 62.812 66.667 12.03 9.36 39.00 3.69
3692 4258 3.131577 TGGGTCGAGCTATTAACGAATGT 59.868 43.478 15.18 0.00 37.77 2.71
3698 4264 5.241064 TCTCTGTATGGGTCGAGCTATTAAC 59.759 44.000 18.80 12.15 0.00 2.01
3700 4266 4.981812 TCTCTGTATGGGTCGAGCTATTA 58.018 43.478 18.80 7.92 0.00 0.98
3706 4272 4.806247 GTGATTTTCTCTGTATGGGTCGAG 59.194 45.833 0.00 0.00 0.00 4.04
3708 4274 4.503910 TGTGATTTTCTCTGTATGGGTCG 58.496 43.478 0.00 0.00 0.00 4.79
3717 4283 5.220739 GGGACGAATCATGTGATTTTCTCTG 60.221 44.000 9.42 0.55 44.14 3.35
3731 4297 4.069304 CCAACAAGTTAAGGGACGAATCA 58.931 43.478 0.00 0.00 0.00 2.57
3755 4321 1.694150 ACAGGAGCACATGTGTAGTGT 59.306 47.619 26.01 19.79 39.59 3.55
3758 4324 2.497675 AGGTACAGGAGCACATGTGTAG 59.502 50.000 26.01 13.92 41.18 2.74
3762 4328 1.644509 TCAGGTACAGGAGCACATGT 58.355 50.000 6.68 6.68 43.46 3.21
3763 4329 2.768253 TTCAGGTACAGGAGCACATG 57.232 50.000 0.00 0.00 0.00 3.21
3766 4350 2.152016 GGTTTTCAGGTACAGGAGCAC 58.848 52.381 0.00 0.00 0.00 4.40
3772 4356 6.534079 CCGTATTTAGAGGTTTTCAGGTACAG 59.466 42.308 0.00 0.00 0.00 2.74
3804 4388 8.082852 ACCGCAAATGTTACATATTTTTGTGTA 58.917 29.630 16.36 0.00 36.53 2.90
3805 4389 6.926272 ACCGCAAATGTTACATATTTTTGTGT 59.074 30.769 16.36 9.57 36.53 3.72
3813 4397 4.164843 AGGGACCGCAAATGTTACATAT 57.835 40.909 0.00 0.00 0.00 1.78
3821 4405 3.486383 ACCATATTAGGGACCGCAAATG 58.514 45.455 0.49 0.00 0.00 2.32
3827 4411 2.025636 AGGGACCATATTAGGGACCG 57.974 55.000 9.26 0.00 40.56 4.79
3841 4425 4.159879 CGTATGAGGGGTCATATTAGGGAC 59.840 50.000 0.00 0.00 35.37 4.46
3842 4426 4.350245 CGTATGAGGGGTCATATTAGGGA 58.650 47.826 0.00 0.00 35.37 4.20
3843 4427 3.118738 GCGTATGAGGGGTCATATTAGGG 60.119 52.174 0.00 0.00 35.37 3.53
3844 4428 3.769844 AGCGTATGAGGGGTCATATTAGG 59.230 47.826 0.00 0.00 35.37 2.69
3845 4429 4.707448 AGAGCGTATGAGGGGTCATATTAG 59.293 45.833 0.00 0.00 35.37 1.73
3846 4430 4.673968 AGAGCGTATGAGGGGTCATATTA 58.326 43.478 0.00 0.00 35.37 0.98
3847 4431 3.511477 AGAGCGTATGAGGGGTCATATT 58.489 45.455 0.00 0.00 35.37 1.28
3848 4432 3.176924 AGAGCGTATGAGGGGTCATAT 57.823 47.619 0.00 0.00 35.37 1.78
3849 4433 2.677542 AGAGCGTATGAGGGGTCATA 57.322 50.000 0.00 0.00 33.28 2.15
3850 4434 2.520069 CTAGAGCGTATGAGGGGTCAT 58.480 52.381 0.00 0.00 33.28 3.06
3851 4435 1.982660 CTAGAGCGTATGAGGGGTCA 58.017 55.000 0.00 0.00 33.28 4.02
3909 4493 1.066358 CCTTCCGTACAAGGGGTCTTC 60.066 57.143 4.40 0.00 39.60 2.87
3924 4508 2.506438 CGACGACGGCTTCCTTCC 60.506 66.667 0.00 0.00 35.72 3.46
3930 4514 2.728383 CGACAACGACGACGGCTT 60.728 61.111 12.58 0.00 44.46 4.35
3955 4539 2.778679 GACAATGAGCGGCGACAC 59.221 61.111 12.98 0.92 0.00 3.67
3962 4546 2.979808 CGACGACGACAATGAGCG 59.020 61.111 0.00 0.00 42.66 5.03
4007 4591 5.353938 AGCGCAATAACCTACGAAGAAATA 58.646 37.500 11.47 0.00 0.00 1.40
4028 4612 0.251354 TGAGTCCATCAGAGGCAAGC 59.749 55.000 0.00 0.00 32.77 4.01
4029 4613 3.204526 GAATGAGTCCATCAGAGGCAAG 58.795 50.000 0.00 0.00 42.53 4.01
4053 4637 0.395312 GAAGAACCAAGTCCCCGTCA 59.605 55.000 0.00 0.00 0.00 4.35
4056 4640 0.321653 CCAGAAGAACCAAGTCCCCG 60.322 60.000 0.00 0.00 0.00 5.73
4063 4647 2.093394 TGACGTTGTCCAGAAGAACCAA 60.093 45.455 0.00 0.00 0.00 3.67
4064 4648 1.483004 TGACGTTGTCCAGAAGAACCA 59.517 47.619 0.00 0.00 0.00 3.67
4068 4652 4.447290 TCAATTTGACGTTGTCCAGAAGA 58.553 39.130 0.00 0.00 0.00 2.87
4072 4656 2.662791 CGCTCAATTTGACGTTGTCCAG 60.663 50.000 10.99 0.00 0.00 3.86
4083 4667 0.999406 ACGTCGATCCGCTCAATTTG 59.001 50.000 0.00 0.00 0.00 2.32
4084 4668 0.999406 CACGTCGATCCGCTCAATTT 59.001 50.000 0.00 0.00 0.00 1.82
4087 4671 2.149803 AACCACGTCGATCCGCTCAA 62.150 55.000 0.00 0.00 0.00 3.02
4088 4672 2.149803 AAACCACGTCGATCCGCTCA 62.150 55.000 0.00 0.00 0.00 4.26
4089 4673 1.445582 AAACCACGTCGATCCGCTC 60.446 57.895 0.00 0.00 0.00 5.03
4134 4718 7.543868 TGGTTCACAATTTCACTGTTTAGTTTG 59.456 33.333 0.00 0.00 34.07 2.93
4140 4724 5.398603 TGTGGTTCACAATTTCACTGTTT 57.601 34.783 0.00 0.00 41.69 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.