Multiple sequence alignment - TraesCS7D01G122000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G122000 chr7D 100.000 3305 0 0 1 3305 75946452 75949756 0.000000e+00 6104.0
1 TraesCS7D01G122000 chr7D 85.166 573 76 9 1739 2306 579099731 579099163 2.210000e-161 579.0
2 TraesCS7D01G122000 chr7D 92.308 39 2 1 1235 1272 426644332 426644370 2.000000e-03 54.7
3 TraesCS7D01G122000 chr7B 89.439 1231 97 13 1739 2955 22436467 22437678 0.000000e+00 1522.0
4 TraesCS7D01G122000 chr7B 85.865 948 66 33 659 1590 22260063 22260958 0.000000e+00 946.0
5 TraesCS7D01G122000 chr7B 93.913 575 35 0 1733 2307 22261054 22261628 0.000000e+00 869.0
6 TraesCS7D01G122000 chr7B 87.093 767 69 20 824 1589 22435613 22436350 0.000000e+00 841.0
7 TraesCS7D01G122000 chr7B 85.315 572 77 7 1739 2306 643292159 643291591 4.750000e-163 584.0
8 TraesCS7D01G122000 chr7B 84.956 565 77 8 1739 2299 643295730 643295170 1.720000e-157 566.0
9 TraesCS7D01G122000 chr7B 88.470 477 24 11 288 737 22435111 22435583 6.240000e-152 547.0
10 TraesCS7D01G122000 chr7B 84.248 565 77 10 1739 2299 643462865 643463421 1.040000e-149 540.0
11 TraesCS7D01G122000 chr7B 79.134 254 34 11 112 362 22248562 22248799 1.230000e-34 158.0
12 TraesCS7D01G122000 chr7B 88.596 114 10 3 1 114 22077772 22077882 5.750000e-28 135.0
13 TraesCS7D01G122000 chr7B 79.397 199 35 4 2677 2871 686651460 686651656 5.750000e-28 135.0
14 TraesCS7D01G122000 chr7B 90.385 52 5 0 1221 1272 503506471 503506522 5.920000e-08 69.4
15 TraesCS7D01G122000 chr7B 100.000 32 0 0 766 797 22435576 22435607 3.560000e-05 60.2
16 TraesCS7D01G122000 chr7A 90.357 1120 47 20 208 1287 80084844 80085942 0.000000e+00 1413.0
17 TraesCS7D01G122000 chr7A 93.826 826 49 2 1733 2557 80133498 80134322 0.000000e+00 1242.0
18 TraesCS7D01G122000 chr7A 87.714 993 72 33 618 1589 80132412 80133375 0.000000e+00 1112.0
19 TraesCS7D01G122000 chr7A 95.130 575 28 0 1733 2307 80086313 80086887 0.000000e+00 907.0
20 TraesCS7D01G122000 chr7A 85.461 564 74 8 1739 2298 670946628 670946069 6.150000e-162 580.0
21 TraesCS7D01G122000 chr7A 95.023 221 11 0 1370 1590 80085991 80086211 6.790000e-92 348.0
22 TraesCS7D01G122000 chr7A 96.694 121 4 0 2554 2674 80135385 80135505 5.590000e-48 202.0
23 TraesCS7D01G122000 chr7A 92.941 85 5 1 91 175 80083185 80083268 4.480000e-24 122.0
24 TraesCS7D01G122000 chr7A 91.011 89 7 1 422 509 80132250 80132338 5.790000e-23 119.0
25 TraesCS7D01G122000 chr7A 96.429 56 2 0 1 56 80083059 80083114 3.510000e-15 93.5
26 TraesCS7D01G122000 chr7A 88.889 45 2 3 1663 1706 202162000 202161958 6.000000e-03 52.8
27 TraesCS7D01G122000 chr7A 88.889 45 2 3 1663 1706 717565881 717565839 6.000000e-03 52.8
28 TraesCS7D01G122000 chr2D 79.931 289 48 8 2675 2958 56310938 56311221 1.550000e-48 204.0
29 TraesCS7D01G122000 chr2D 100.000 37 0 0 2675 2711 56251609 56251645 5.920000e-08 69.4
30 TraesCS7D01G122000 chr2D 89.796 49 4 1 1244 1291 96293411 96293459 9.900000e-06 62.1
31 TraesCS7D01G122000 chr2D 100.000 30 0 0 1243 1272 643788532 643788561 4.610000e-04 56.5
32 TraesCS7D01G122000 chr2B 77.647 255 46 8 2710 2958 89325557 89325806 9.560000e-31 145.0
33 TraesCS7D01G122000 chrUn 82.692 156 25 2 1435 1589 97111875 97111721 1.600000e-28 137.0
34 TraesCS7D01G122000 chr3A 88.372 86 10 0 2762 2847 164283429 164283514 1.620000e-18 104.0
35 TraesCS7D01G122000 chr3A 86.792 53 5 2 1655 1706 662415484 662415535 1.280000e-04 58.4
36 TraesCS7D01G122000 chr5B 76.923 130 22 7 2688 2811 631891709 631891582 2.130000e-07 67.6
37 TraesCS7D01G122000 chr4D 97.297 37 1 0 1673 1709 363677560 363677524 2.750000e-06 63.9
38 TraesCS7D01G122000 chr4A 97.297 37 1 0 1673 1709 101750306 101750342 2.750000e-06 63.9
39 TraesCS7D01G122000 chr5D 100.000 33 0 0 1674 1706 241274853 241274821 9.900000e-06 62.1
40 TraesCS7D01G122000 chr5D 87.273 55 1 5 1650 1704 367692663 367692615 1.280000e-04 58.4
41 TraesCS7D01G122000 chr6B 97.143 35 1 0 1672 1706 422987737 422987771 3.560000e-05 60.2
42 TraesCS7D01G122000 chr1B 94.872 39 0 2 1670 1706 67537614 67537576 3.560000e-05 60.2
43 TraesCS7D01G122000 chr2A 100.000 30 0 0 1243 1272 768657390 768657419 4.610000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G122000 chr7D 75946452 75949756 3304 False 6104.00 6104 100.00000 1 3305 1 chr7D.!!$F1 3304
1 TraesCS7D01G122000 chr7D 579099163 579099731 568 True 579.00 579 85.16600 1739 2306 1 chr7D.!!$R1 567
2 TraesCS7D01G122000 chr7B 22260063 22261628 1565 False 907.50 946 89.88900 659 2307 2 chr7B.!!$F6 1648
3 TraesCS7D01G122000 chr7B 22435111 22437678 2567 False 742.55 1522 91.25050 288 2955 4 chr7B.!!$F7 2667
4 TraesCS7D01G122000 chr7B 643291591 643295730 4139 True 575.00 584 85.13550 1739 2306 2 chr7B.!!$R1 567
5 TraesCS7D01G122000 chr7B 643462865 643463421 556 False 540.00 540 84.24800 1739 2299 1 chr7B.!!$F4 560
6 TraesCS7D01G122000 chr7A 80132250 80135505 3255 False 668.75 1242 92.31125 422 2674 4 chr7A.!!$F2 2252
7 TraesCS7D01G122000 chr7A 670946069 670946628 559 True 580.00 580 85.46100 1739 2298 1 chr7A.!!$R2 559
8 TraesCS7D01G122000 chr7A 80083059 80086887 3828 False 576.70 1413 93.97600 1 2307 5 chr7A.!!$F1 2306

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
71 129 0.254178 CTAGTCAACAGCCTGCCCAT 59.746 55.0 0.0 0.0 0.0 4.00 F
1042 2729 0.036022 GTGCCTTGTTGCTCTCTCCT 59.964 55.0 0.0 0.0 0.0 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1699 3424 0.108138 GAGCGTGGTCAGTGGCTTAT 60.108 55.0 0.00 0.0 35.54 1.73 R
2909 9308 0.456221 TCTCGCTCCGGAAAGACATC 59.544 55.0 5.23 0.0 0.00 3.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
68 126 2.103042 CGCTAGTCAACAGCCTGCC 61.103 63.158 0.00 0.00 35.53 4.85
71 129 0.254178 CTAGTCAACAGCCTGCCCAT 59.746 55.000 0.00 0.00 0.00 4.00
72 130 1.486310 CTAGTCAACAGCCTGCCCATA 59.514 52.381 0.00 0.00 0.00 2.74
73 131 0.921896 AGTCAACAGCCTGCCCATAT 59.078 50.000 0.00 0.00 0.00 1.78
74 132 2.126882 AGTCAACAGCCTGCCCATATA 58.873 47.619 0.00 0.00 0.00 0.86
76 134 3.139025 AGTCAACAGCCTGCCCATATATT 59.861 43.478 0.00 0.00 0.00 1.28
78 136 5.070001 GTCAACAGCCTGCCCATATATTTA 58.930 41.667 0.00 0.00 0.00 1.40
80 138 6.209391 GTCAACAGCCTGCCCATATATTTATT 59.791 38.462 0.00 0.00 0.00 1.40
81 139 6.434028 TCAACAGCCTGCCCATATATTTATTC 59.566 38.462 0.00 0.00 0.00 1.75
82 140 5.891198 ACAGCCTGCCCATATATTTATTCA 58.109 37.500 0.00 0.00 0.00 2.57
83 141 6.314120 ACAGCCTGCCCATATATTTATTCAA 58.686 36.000 0.00 0.00 0.00 2.69
84 142 6.209391 ACAGCCTGCCCATATATTTATTCAAC 59.791 38.462 0.00 0.00 0.00 3.18
85 143 6.435277 CAGCCTGCCCATATATTTATTCAACT 59.565 38.462 0.00 0.00 0.00 3.16
86 144 7.611467 CAGCCTGCCCATATATTTATTCAACTA 59.389 37.037 0.00 0.00 0.00 2.24
87 145 7.831193 AGCCTGCCCATATATTTATTCAACTAG 59.169 37.037 0.00 0.00 0.00 2.57
88 146 7.829211 GCCTGCCCATATATTTATTCAACTAGA 59.171 37.037 0.00 0.00 0.00 2.43
89 147 9.388506 CCTGCCCATATATTTATTCAACTAGAG 57.611 37.037 0.00 0.00 0.00 2.43
90 148 8.792830 TGCCCATATATTTATTCAACTAGAGC 57.207 34.615 0.00 0.00 0.00 4.09
91 149 8.382405 TGCCCATATATTTATTCAACTAGAGCA 58.618 33.333 0.00 0.00 0.00 4.26
92 150 9.231297 GCCCATATATTTATTCAACTAGAGCAA 57.769 33.333 0.00 0.00 0.00 3.91
95 153 9.746711 CATATATTTATTCAACTAGAGCAACGC 57.253 33.333 0.00 0.00 0.00 4.84
96 154 9.712305 ATATATTTATTCAACTAGAGCAACGCT 57.288 29.630 0.00 0.00 43.88 5.07
98 156 9.712305 ATATTTATTCAACTAGAGCAACGCTAT 57.288 29.630 0.00 0.00 39.88 2.97
99 157 7.843490 TTTATTCAACTAGAGCAACGCTATT 57.157 32.000 0.00 0.00 39.88 1.73
100 158 5.975410 ATTCAACTAGAGCAACGCTATTC 57.025 39.130 0.00 0.00 39.88 1.75
101 159 4.720649 TCAACTAGAGCAACGCTATTCT 57.279 40.909 0.00 0.00 39.88 2.40
126 184 6.654793 ACGTACGAGTTTTACTCTAGGTAG 57.345 41.667 24.41 0.00 42.92 3.18
127 185 6.166982 ACGTACGAGTTTTACTCTAGGTAGT 58.833 40.000 24.41 0.00 42.92 2.73
137 195 9.199645 GTTTTACTCTAGGTAGTTATTCCTCCT 57.800 37.037 0.00 0.00 35.51 3.69
206 1775 5.476945 AGGATTTCTGGTTCAACAATGGTAC 59.523 40.000 0.00 0.00 0.00 3.34
208 1777 6.657541 GGATTTCTGGTTCAACAATGGTACTA 59.342 38.462 0.00 0.00 0.00 1.82
210 1779 7.681939 TTTCTGGTTCAACAATGGTACTATC 57.318 36.000 0.00 0.00 0.00 2.08
249 1850 2.420967 CGACCCCCACCCTTTACTATTG 60.421 54.545 0.00 0.00 0.00 1.90
272 1873 8.467963 TTGATTGAATCATGTATTACCATGCT 57.532 30.769 8.90 0.00 41.60 3.79
280 1881 8.922931 ATCATGTATTACCATGCTTGTATGAA 57.077 30.769 0.35 0.00 41.60 2.57
282 1883 7.772757 TCATGTATTACCATGCTTGTATGAACA 59.227 33.333 0.35 0.00 41.60 3.18
522 2149 5.707242 ACACATCTCACGACCGATATATT 57.293 39.130 0.00 0.00 0.00 1.28
603 2232 2.498887 CGCGCGGTGTTTACTTGC 60.499 61.111 24.84 0.00 0.00 4.01
860 2530 2.322355 AGAGCTATGTGTGCATGGAC 57.678 50.000 10.90 10.90 35.88 4.02
890 2562 8.517062 AAGAGCATTATAAATAGGGCATCATC 57.483 34.615 0.00 0.00 0.00 2.92
934 2614 1.085893 GCTCTCAGCTCCAAAGAAGC 58.914 55.000 0.00 0.00 38.45 3.86
935 2615 1.736612 CTCTCAGCTCCAAAGAAGCC 58.263 55.000 0.00 0.00 0.00 4.35
936 2616 1.278699 CTCTCAGCTCCAAAGAAGCCT 59.721 52.381 0.00 0.00 0.00 4.58
937 2617 2.499289 CTCTCAGCTCCAAAGAAGCCTA 59.501 50.000 0.00 0.00 0.00 3.93
942 2622 2.769095 AGCTCCAAAGAAGCCTACCTAG 59.231 50.000 0.00 0.00 0.00 3.02
963 2650 2.948979 GCTAGCTAGCTCTCTTGAGACA 59.051 50.000 33.71 0.00 45.62 3.41
965 2652 4.759693 GCTAGCTAGCTCTCTTGAGACATA 59.240 45.833 33.71 0.00 45.62 2.29
1042 2729 0.036022 GTGCCTTGTTGCTCTCTCCT 59.964 55.000 0.00 0.00 0.00 3.69
1047 2734 3.072944 CCTTGTTGCTCTCTCCTTCTTG 58.927 50.000 0.00 0.00 0.00 3.02
1080 2773 4.587189 GGCTACGGCTACGGGCAG 62.587 72.222 5.12 3.48 46.48 4.85
1088 2787 2.516930 CTACGGGCAGGGCAATGG 60.517 66.667 0.00 0.00 0.00 3.16
1096 2795 1.456145 CAGGGCAATGGCTATGGCA 60.456 57.895 11.99 0.00 44.51 4.92
1102 2801 1.674359 CAATGGCTATGGCAACGGTA 58.326 50.000 2.58 0.00 42.43 4.02
1122 2821 4.748409 GGCAACGGCAACAACAAT 57.252 50.000 0.00 0.00 43.71 2.71
1131 2830 0.732538 GCAACAACAATGGCTACGGC 60.733 55.000 0.00 0.00 37.82 5.68
1151 2850 3.882326 CGGGCAGCTGGATCCCAT 61.882 66.667 23.04 0.00 40.05 4.00
1173 2872 2.685388 GTTCTATGAAAAGAGCTGCCCC 59.315 50.000 0.00 0.00 0.00 5.80
1281 2980 2.227388 CCATGACTGCTTTGTTCAGGTC 59.773 50.000 0.00 0.00 35.94 3.85
1287 2986 5.769662 TGACTGCTTTGTTCAGGTCAAATAT 59.230 36.000 0.00 0.00 34.88 1.28
1291 2990 9.632638 ACTGCTTTGTTCAGGTCAAATATATAT 57.367 29.630 0.00 0.00 34.88 0.86
1312 3023 7.736881 ATATACTCATCAATCATCCAGAGCT 57.263 36.000 0.00 0.00 0.00 4.09
1313 3024 4.074627 ACTCATCAATCATCCAGAGCTG 57.925 45.455 0.00 0.00 0.00 4.24
1314 3025 2.809119 CTCATCAATCATCCAGAGCTGC 59.191 50.000 0.00 0.00 0.00 5.25
1315 3026 2.438392 TCATCAATCATCCAGAGCTGCT 59.562 45.455 0.00 0.00 0.00 4.24
1316 3027 3.118000 TCATCAATCATCCAGAGCTGCTT 60.118 43.478 2.53 0.00 0.00 3.91
1317 3028 3.361281 TCAATCATCCAGAGCTGCTTT 57.639 42.857 2.53 0.00 0.00 3.51
1318 3029 3.276857 TCAATCATCCAGAGCTGCTTTC 58.723 45.455 2.53 0.00 0.00 2.62
1319 3030 3.014623 CAATCATCCAGAGCTGCTTTCA 58.985 45.455 2.53 0.00 0.00 2.69
1320 3031 2.865119 TCATCCAGAGCTGCTTTCAA 57.135 45.000 2.53 0.00 0.00 2.69
1321 3032 3.361281 TCATCCAGAGCTGCTTTCAAT 57.639 42.857 2.53 0.00 0.00 2.57
1322 3033 3.693807 TCATCCAGAGCTGCTTTCAATT 58.306 40.909 2.53 0.00 0.00 2.32
1323 3034 3.693085 TCATCCAGAGCTGCTTTCAATTC 59.307 43.478 2.53 0.00 0.00 2.17
1324 3035 2.440409 TCCAGAGCTGCTTTCAATTCC 58.560 47.619 2.53 0.00 0.00 3.01
1325 3036 2.040813 TCCAGAGCTGCTTTCAATTCCT 59.959 45.455 2.53 0.00 0.00 3.36
1335 3046 3.181533 GCTTTCAATTCCTCACGTACGAC 60.182 47.826 24.41 0.00 0.00 4.34
1357 3068 2.355444 GGTACGAGGTCTAAGCTGAGAC 59.645 54.545 21.64 21.64 44.39 3.36
1362 3073 1.226717 GTCTAAGCTGAGACCGCGG 60.227 63.158 26.86 26.86 40.07 6.46
1366 3089 2.906182 TAAGCTGAGACCGCGGCATG 62.906 60.000 28.58 12.43 42.62 4.06
1372 3095 0.389817 GAGACCGCGGCATGCATATA 60.390 55.000 28.58 0.00 46.97 0.86
1591 3316 2.288640 GCACAGTCCTGGTACGTACTTT 60.289 50.000 24.07 0.00 34.19 2.66
1592 3317 3.801293 GCACAGTCCTGGTACGTACTTTT 60.801 47.826 24.07 3.28 34.19 2.27
1615 3340 3.680777 TTTTTGAGGGAAAGTCCTGGT 57.319 42.857 0.00 0.00 37.25 4.00
1616 3341 4.799715 TTTTTGAGGGAAAGTCCTGGTA 57.200 40.909 0.00 0.00 37.25 3.25
1618 3343 1.263356 TGAGGGAAAGTCCTGGTACG 58.737 55.000 0.00 0.00 37.25 3.67
1619 3344 1.264295 GAGGGAAAGTCCTGGTACGT 58.736 55.000 0.00 0.00 37.25 3.57
1622 3347 2.174360 GGGAAAGTCCTGGTACGTACT 58.826 52.381 24.07 2.92 36.57 2.73
1623 3348 3.010584 AGGGAAAGTCCTGGTACGTACTA 59.989 47.826 24.07 18.04 36.57 1.82
1624 3349 3.129462 GGGAAAGTCCTGGTACGTACTAC 59.871 52.174 24.07 16.39 36.57 2.73
1625 3350 4.013050 GGAAAGTCCTGGTACGTACTACT 58.987 47.826 24.07 18.06 32.53 2.57
1636 3361 2.508944 CGTACTACTACGTTGCACGA 57.491 50.000 14.18 0.06 46.05 4.35
1637 3362 2.161278 CGTACTACTACGTTGCACGAC 58.839 52.381 14.18 0.00 46.05 4.34
1638 3363 2.161278 GTACTACTACGTTGCACGACG 58.839 52.381 9.32 9.32 46.05 5.12
1639 3364 0.727122 ACTACTACGTTGCACGACGC 60.727 55.000 10.73 0.00 46.05 5.19
1648 3373 2.661866 GCACGACGCACACCTTCT 60.662 61.111 0.00 0.00 41.79 2.85
1649 3374 2.943345 GCACGACGCACACCTTCTG 61.943 63.158 0.00 0.00 41.79 3.02
1650 3375 2.661866 ACGACGCACACCTTCTGC 60.662 61.111 0.00 0.00 0.00 4.26
1651 3376 2.661537 CGACGCACACCTTCTGCA 60.662 61.111 0.00 0.00 34.00 4.41
1673 3398 6.404712 CATGCATGCATGTGTATAGTAGAG 57.595 41.667 40.30 18.96 46.20 2.43
1675 3400 6.648879 TGCATGCATGTGTATAGTAGAGTA 57.351 37.500 26.79 0.00 0.00 2.59
1677 3402 7.670364 TGCATGCATGTGTATAGTAGAGTAAT 58.330 34.615 26.79 0.00 0.00 1.89
1682 3407 9.350951 TGCATGTGTATAGTAGAGTAATGTACT 57.649 33.333 5.30 5.30 42.86 2.73
1693 3418 4.732672 AGTAATGTACTCCCTCCGTTTC 57.267 45.455 0.00 0.00 32.47 2.78
1694 3419 4.351127 AGTAATGTACTCCCTCCGTTTCT 58.649 43.478 0.00 0.00 32.47 2.52
1695 3420 5.513233 AGTAATGTACTCCCTCCGTTTCTA 58.487 41.667 0.00 0.00 32.47 2.10
1696 3421 5.954150 AGTAATGTACTCCCTCCGTTTCTAA 59.046 40.000 0.00 0.00 32.47 2.10
1698 3423 5.952347 ATGTACTCCCTCCGTTTCTAAAT 57.048 39.130 0.00 0.00 0.00 1.40
1699 3424 7.427989 AATGTACTCCCTCCGTTTCTAAATA 57.572 36.000 0.00 0.00 0.00 1.40
1700 3425 7.613551 ATGTACTCCCTCCGTTTCTAAATAT 57.386 36.000 0.00 0.00 0.00 1.28
1701 3426 8.716674 ATGTACTCCCTCCGTTTCTAAATATA 57.283 34.615 0.00 0.00 0.00 0.86
1704 3429 6.522946 ACTCCCTCCGTTTCTAAATATAAGC 58.477 40.000 0.00 0.00 0.00 3.09
1705 3430 5.861727 TCCCTCCGTTTCTAAATATAAGCC 58.138 41.667 0.00 0.00 0.00 4.35
1708 3433 6.289064 CCTCCGTTTCTAAATATAAGCCACT 58.711 40.000 0.00 0.00 0.00 4.00
1715 3440 5.597806 TCTAAATATAAGCCACTGACCACG 58.402 41.667 0.00 0.00 0.00 4.94
1719 3444 1.185618 TAAGCCACTGACCACGCTCT 61.186 55.000 0.00 0.00 0.00 4.09
1720 3445 2.721971 AAGCCACTGACCACGCTCTG 62.722 60.000 0.00 0.00 0.00 3.35
2361 7686 1.247567 ACGGGAAAGCAAGGAATGTG 58.752 50.000 0.00 0.00 0.00 3.21
2370 7695 6.420903 GGAAAGCAAGGAATGTGTCTTAAAAC 59.579 38.462 0.00 0.00 0.00 2.43
2457 7782 6.314784 CGAGAATTTTCTGTTATCAACCACC 58.685 40.000 0.00 0.00 37.73 4.61
2675 9068 6.575201 GCTCAAATTAAAATAGCTCGGAATCG 59.425 38.462 0.00 0.00 37.82 3.34
2683 9076 1.043116 AGCTCGGAATCGGACATGGA 61.043 55.000 0.00 0.00 36.95 3.41
2695 9088 7.310113 GGAATCGGACATGGAGTATCTAATCTT 60.310 40.741 0.00 0.00 33.73 2.40
2696 9089 6.332735 TCGGACATGGAGTATCTAATCTTG 57.667 41.667 0.00 0.00 33.73 3.02
2701 9094 6.520272 ACATGGAGTATCTAATCTTGAGCAC 58.480 40.000 0.00 0.00 33.73 4.40
2725 9118 0.447801 GCACCCGCATGAACAGTAAG 59.552 55.000 0.00 0.00 38.36 2.34
2727 9120 2.151202 CACCCGCATGAACAGTAAGTT 58.849 47.619 0.00 0.00 44.93 2.66
2854 9247 6.649155 AGGCCTGTACAAAGAAACAAAATTT 58.351 32.000 3.11 0.00 0.00 1.82
2855 9248 6.538381 AGGCCTGTACAAAGAAACAAAATTTG 59.462 34.615 3.11 3.89 39.32 2.32
2858 9251 7.044798 CCTGTACAAAGAAACAAAATTTGGGA 58.955 34.615 10.71 0.00 38.06 4.37
2903 9302 3.713889 TTTTGTTTTTCTTGCACGCAC 57.286 38.095 0.00 0.00 0.00 5.34
2907 9306 0.028770 TTTTTCTTGCACGCACCTCG 59.971 50.000 0.00 0.00 45.38 4.63
2908 9307 1.781025 TTTTCTTGCACGCACCTCGG 61.781 55.000 0.00 0.00 43.86 4.63
2909 9308 4.680237 TCTTGCACGCACCTCGGG 62.680 66.667 0.00 0.00 46.33 5.14
2910 9309 4.680237 CTTGCACGCACCTCGGGA 62.680 66.667 0.00 0.00 46.58 5.14
2911 9310 3.958147 CTTGCACGCACCTCGGGAT 62.958 63.158 0.00 0.00 46.58 3.85
2912 9311 4.758251 TGCACGCACCTCGGGATG 62.758 66.667 0.00 0.00 46.58 3.51
2914 9313 2.509336 CACGCACCTCGGGATGTC 60.509 66.667 0.00 0.00 46.58 3.06
2916 9315 2.283529 ACGCACCTCGGGATGTCTT 61.284 57.895 0.00 0.00 43.86 3.01
2918 9317 1.084370 CGCACCTCGGGATGTCTTTC 61.084 60.000 0.00 0.00 33.78 2.62
2920 9319 0.460284 CACCTCGGGATGTCTTTCCG 60.460 60.000 0.00 0.00 44.59 4.30
2924 9325 1.521681 CGGGATGTCTTTCCGGAGC 60.522 63.158 3.34 0.00 40.07 4.70
2927 9328 0.528684 GGATGTCTTTCCGGAGCGAG 60.529 60.000 3.34 4.68 0.00 5.03
2930 9331 1.758936 TGTCTTTCCGGAGCGAGATA 58.241 50.000 3.34 5.62 0.00 1.98
2943 9344 3.136763 AGCGAGATATTGCAGGATGTTG 58.863 45.455 1.71 0.00 39.31 3.33
2955 9356 3.803778 GCAGGATGTTGGAAAACTTGTTG 59.196 43.478 0.00 0.00 39.31 3.33
2956 9357 4.441356 GCAGGATGTTGGAAAACTTGTTGA 60.441 41.667 0.00 0.00 39.31 3.18
2957 9358 5.739935 GCAGGATGTTGGAAAACTTGTTGAT 60.740 40.000 0.00 0.00 39.31 2.57
2958 9359 6.282930 CAGGATGTTGGAAAACTTGTTGATT 58.717 36.000 0.00 0.00 0.00 2.57
2959 9360 7.432869 CAGGATGTTGGAAAACTTGTTGATTA 58.567 34.615 0.00 0.00 0.00 1.75
2960 9361 7.925483 CAGGATGTTGGAAAACTTGTTGATTAA 59.075 33.333 0.00 0.00 0.00 1.40
2961 9362 8.650490 AGGATGTTGGAAAACTTGTTGATTAAT 58.350 29.630 0.00 0.00 0.00 1.40
2962 9363 9.271828 GGATGTTGGAAAACTTGTTGATTAATT 57.728 29.630 0.00 0.00 0.00 1.40
2964 9365 9.829507 ATGTTGGAAAACTTGTTGATTAATTGA 57.170 25.926 0.00 0.00 0.00 2.57
2965 9366 9.829507 TGTTGGAAAACTTGTTGATTAATTGAT 57.170 25.926 0.00 0.00 0.00 2.57
2995 9396 8.545229 AAAAACTTGTTGATGTTCATTCACAA 57.455 26.923 9.04 9.04 0.00 3.33
2996 9397 8.545229 AAAACTTGTTGATGTTCATTCACAAA 57.455 26.923 10.03 0.00 0.00 2.83
2997 9398 8.545229 AAACTTGTTGATGTTCATTCACAAAA 57.455 26.923 10.03 0.00 0.00 2.44
2998 9399 8.545229 AACTTGTTGATGTTCATTCACAAAAA 57.455 26.923 10.03 0.00 0.00 1.94
3055 9456 8.741101 TTTGAATTTACTGTTCATACATGTGC 57.259 30.769 9.11 0.00 35.68 4.57
3056 9457 7.446001 TGAATTTACTGTTCATACATGTGCA 57.554 32.000 9.11 0.00 32.86 4.57
3057 9458 8.054152 TGAATTTACTGTTCATACATGTGCAT 57.946 30.769 9.11 0.00 32.86 3.96
3058 9459 8.522003 TGAATTTACTGTTCATACATGTGCATT 58.478 29.630 9.11 0.00 32.86 3.56
3059 9460 9.357652 GAATTTACTGTTCATACATGTGCATTT 57.642 29.630 9.11 0.00 32.86 2.32
3060 9461 8.692110 ATTTACTGTTCATACATGTGCATTTG 57.308 30.769 9.11 0.00 32.86 2.32
3061 9462 5.710513 ACTGTTCATACATGTGCATTTGT 57.289 34.783 9.11 9.15 32.86 2.83
3062 9463 5.463286 ACTGTTCATACATGTGCATTTGTG 58.537 37.500 9.11 2.65 32.86 3.33
3063 9464 4.236147 TGTTCATACATGTGCATTTGTGC 58.764 39.130 9.11 0.00 0.00 4.57
3064 9465 4.022155 TGTTCATACATGTGCATTTGTGCT 60.022 37.500 9.11 0.58 35.49 4.40
3065 9466 4.359971 TCATACATGTGCATTTGTGCTC 57.640 40.909 9.11 0.00 35.49 4.26
3066 9467 3.757493 TCATACATGTGCATTTGTGCTCA 59.243 39.130 9.11 7.49 41.54 4.26
3067 9468 4.217983 TCATACATGTGCATTTGTGCTCAA 59.782 37.500 9.11 0.00 40.84 3.02
3068 9469 3.021269 ACATGTGCATTTGTGCTCAAG 57.979 42.857 0.00 7.49 40.84 3.02
3069 9470 2.624364 ACATGTGCATTTGTGCTCAAGA 59.376 40.909 12.61 0.00 40.84 3.02
3070 9471 3.257375 ACATGTGCATTTGTGCTCAAGAT 59.743 39.130 12.61 0.00 40.84 2.40
3071 9472 4.242475 CATGTGCATTTGTGCTCAAGATT 58.758 39.130 8.89 0.00 40.84 2.40
3072 9473 3.644823 TGTGCATTTGTGCTCAAGATTG 58.355 40.909 0.98 3.22 35.70 2.67
3073 9474 3.318557 TGTGCATTTGTGCTCAAGATTGA 59.681 39.130 0.98 0.00 35.70 2.57
3074 9475 4.202131 TGTGCATTTGTGCTCAAGATTGAA 60.202 37.500 0.98 0.00 36.64 2.69
3075 9476 4.384846 GTGCATTTGTGCTCAAGATTGAAG 59.615 41.667 0.98 0.00 36.64 3.02
3076 9477 4.038282 TGCATTTGTGCTCAAGATTGAAGT 59.962 37.500 0.98 0.00 36.64 3.01
3077 9478 5.241285 TGCATTTGTGCTCAAGATTGAAGTA 59.759 36.000 0.98 0.00 36.64 2.24
3078 9479 6.151691 GCATTTGTGCTCAAGATTGAAGTAA 58.848 36.000 0.98 0.00 36.64 2.24
3079 9480 6.088616 GCATTTGTGCTCAAGATTGAAGTAAC 59.911 38.462 0.98 0.00 36.64 2.50
3080 9481 6.691754 TTTGTGCTCAAGATTGAAGTAACA 57.308 33.333 0.98 0.00 36.64 2.41
3081 9482 5.673337 TGTGCTCAAGATTGAAGTAACAC 57.327 39.130 0.00 2.26 36.64 3.32
3082 9483 5.368145 TGTGCTCAAGATTGAAGTAACACT 58.632 37.500 0.00 0.00 36.64 3.55
3083 9484 5.822519 TGTGCTCAAGATTGAAGTAACACTT 59.177 36.000 0.00 0.00 41.95 3.16
3084 9485 6.318648 TGTGCTCAAGATTGAAGTAACACTTT 59.681 34.615 0.00 0.00 38.80 2.66
3085 9486 7.148086 TGTGCTCAAGATTGAAGTAACACTTTT 60.148 33.333 0.00 0.00 38.80 2.27
3086 9487 7.166473 GTGCTCAAGATTGAAGTAACACTTTTG 59.834 37.037 0.00 0.00 38.80 2.44
3087 9488 6.142958 GCTCAAGATTGAAGTAACACTTTTGC 59.857 38.462 0.00 0.00 38.80 3.68
3088 9489 7.333528 TCAAGATTGAAGTAACACTTTTGCT 57.666 32.000 0.00 0.00 38.80 3.91
3089 9490 7.771183 TCAAGATTGAAGTAACACTTTTGCTT 58.229 30.769 0.00 0.00 38.80 3.91
3090 9491 8.250332 TCAAGATTGAAGTAACACTTTTGCTTT 58.750 29.630 0.00 0.00 38.80 3.51
3091 9492 7.992180 AGATTGAAGTAACACTTTTGCTTTG 57.008 32.000 0.00 0.00 38.80 2.77
3092 9493 7.547227 AGATTGAAGTAACACTTTTGCTTTGT 58.453 30.769 0.00 0.00 38.80 2.83
3093 9494 6.942886 TTGAAGTAACACTTTTGCTTTGTG 57.057 33.333 0.00 0.00 38.80 3.33
3094 9495 4.862018 TGAAGTAACACTTTTGCTTTGTGC 59.138 37.500 0.00 0.00 38.80 4.57
3095 9496 4.815269 AAGTAACACTTTTGCTTTGTGCA 58.185 34.783 0.00 0.00 42.01 4.57
3121 9522 5.570234 AAAAAGTAACACTTTCGCTTGGA 57.430 34.783 4.86 0.00 46.78 3.53
3122 9523 5.570234 AAAAGTAACACTTTCGCTTGGAA 57.430 34.783 4.86 0.00 46.78 3.53
3123 9524 5.767816 AAAGTAACACTTTCGCTTGGAAT 57.232 34.783 0.00 0.00 44.47 3.01
3124 9525 6.870971 AAAGTAACACTTTCGCTTGGAATA 57.129 33.333 0.00 0.00 44.47 1.75
3125 9526 6.870971 AAGTAACACTTTCGCTTGGAATAA 57.129 33.333 0.00 0.00 34.11 1.40
3126 9527 7.448748 AAGTAACACTTTCGCTTGGAATAAT 57.551 32.000 0.00 0.00 34.11 1.28
3127 9528 8.556213 AAGTAACACTTTCGCTTGGAATAATA 57.444 30.769 0.00 0.00 34.11 0.98
3128 9529 8.556213 AGTAACACTTTCGCTTGGAATAATAA 57.444 30.769 0.00 0.00 33.85 1.40
3129 9530 9.174166 AGTAACACTTTCGCTTGGAATAATAAT 57.826 29.630 0.00 0.00 33.85 1.28
3130 9531 9.783256 GTAACACTTTCGCTTGGAATAATAATT 57.217 29.630 0.00 0.00 33.85 1.40
3161 9562 2.482490 ATACACCGTGAAAGGGCGTATC 60.482 50.000 5.28 0.00 44.21 2.24
3162 9563 4.924019 CCGTGAAAGGGCGTATCA 57.076 55.556 0.00 0.00 33.71 2.15
3163 9564 3.379650 CCGTGAAAGGGCGTATCAT 57.620 52.632 0.00 0.00 33.71 2.45
3164 9565 1.663695 CCGTGAAAGGGCGTATCATT 58.336 50.000 0.00 0.00 33.71 2.57
3165 9566 2.014128 CCGTGAAAGGGCGTATCATTT 58.986 47.619 0.00 0.00 33.71 2.32
3166 9567 2.031683 CCGTGAAAGGGCGTATCATTTC 59.968 50.000 6.00 6.00 33.71 2.17
3167 9568 2.936498 CGTGAAAGGGCGTATCATTTCT 59.064 45.455 11.51 0.00 33.74 2.52
3168 9569 3.001330 CGTGAAAGGGCGTATCATTTCTC 59.999 47.826 11.51 8.40 33.74 2.87
3169 9570 3.938963 GTGAAAGGGCGTATCATTTCTCA 59.061 43.478 11.51 0.00 33.74 3.27
3170 9571 4.576463 GTGAAAGGGCGTATCATTTCTCAT 59.424 41.667 11.51 0.00 33.74 2.90
3171 9572 5.758296 GTGAAAGGGCGTATCATTTCTCATA 59.242 40.000 11.51 0.00 33.74 2.15
3172 9573 6.428159 GTGAAAGGGCGTATCATTTCTCATAT 59.572 38.462 11.51 0.00 33.74 1.78
3173 9574 6.650807 TGAAAGGGCGTATCATTTCTCATATC 59.349 38.462 11.51 0.00 33.74 1.63
3174 9575 5.745312 AGGGCGTATCATTTCTCATATCA 57.255 39.130 0.00 0.00 0.00 2.15
3175 9576 5.482908 AGGGCGTATCATTTCTCATATCAC 58.517 41.667 0.00 0.00 0.00 3.06
3176 9577 4.327357 GGGCGTATCATTTCTCATATCACG 59.673 45.833 0.00 0.00 0.00 4.35
3177 9578 5.161358 GGCGTATCATTTCTCATATCACGA 58.839 41.667 0.00 0.00 0.00 4.35
3178 9579 5.807520 GGCGTATCATTTCTCATATCACGAT 59.192 40.000 0.00 0.00 0.00 3.73
3179 9580 6.972901 GGCGTATCATTTCTCATATCACGATA 59.027 38.462 0.00 0.00 0.00 2.92
3180 9581 7.166638 GGCGTATCATTTCTCATATCACGATAG 59.833 40.741 0.00 0.00 46.19 2.08
3181 9582 7.305705 GCGTATCATTTCTCATATCACGATAGC 60.306 40.741 0.00 0.00 42.67 2.97
3182 9583 7.166638 CGTATCATTTCTCATATCACGATAGCC 59.833 40.741 0.00 0.00 42.67 3.93
3183 9584 6.345096 TCATTTCTCATATCACGATAGCCA 57.655 37.500 0.00 0.00 42.67 4.75
3184 9585 6.758254 TCATTTCTCATATCACGATAGCCAA 58.242 36.000 0.00 0.00 42.67 4.52
3185 9586 6.870439 TCATTTCTCATATCACGATAGCCAAG 59.130 38.462 0.00 0.00 42.67 3.61
3186 9587 4.179926 TCTCATATCACGATAGCCAAGC 57.820 45.455 0.00 0.00 42.67 4.01
3187 9588 2.919859 CTCATATCACGATAGCCAAGCG 59.080 50.000 0.00 0.00 42.67 4.68
3188 9589 1.995484 CATATCACGATAGCCAAGCGG 59.005 52.381 0.00 0.00 42.67 5.52
3199 9600 2.959275 CCAAGCGGCTAGTAGAACG 58.041 57.895 1.35 5.86 0.00 3.95
3202 9603 2.279318 GCGGCTAGTAGAACGCCC 60.279 66.667 21.82 4.92 45.70 6.13
3203 9604 2.783288 GCGGCTAGTAGAACGCCCT 61.783 63.158 21.82 0.00 45.70 5.19
3204 9605 1.814527 CGGCTAGTAGAACGCCCTT 59.185 57.895 0.00 0.00 40.70 3.95
3205 9606 0.248949 CGGCTAGTAGAACGCCCTTC 60.249 60.000 0.00 0.00 40.70 3.46
3206 9607 0.248949 GGCTAGTAGAACGCCCTTCG 60.249 60.000 0.00 0.00 45.38 3.79
3207 9608 0.248949 GCTAGTAGAACGCCCTTCGG 60.249 60.000 0.00 0.00 43.86 4.30
3218 9619 3.551259 CCCTTCGGCATACAACACT 57.449 52.632 0.00 0.00 0.00 3.55
3219 9620 2.684001 CCCTTCGGCATACAACACTA 57.316 50.000 0.00 0.00 0.00 2.74
3220 9621 2.980568 CCCTTCGGCATACAACACTAA 58.019 47.619 0.00 0.00 0.00 2.24
3221 9622 3.541632 CCCTTCGGCATACAACACTAAT 58.458 45.455 0.00 0.00 0.00 1.73
3222 9623 3.560068 CCCTTCGGCATACAACACTAATC 59.440 47.826 0.00 0.00 0.00 1.75
3223 9624 4.188462 CCTTCGGCATACAACACTAATCA 58.812 43.478 0.00 0.00 0.00 2.57
3224 9625 4.271049 CCTTCGGCATACAACACTAATCAG 59.729 45.833 0.00 0.00 0.00 2.90
3225 9626 4.729227 TCGGCATACAACACTAATCAGA 57.271 40.909 0.00 0.00 0.00 3.27
3226 9627 4.682787 TCGGCATACAACACTAATCAGAG 58.317 43.478 0.00 0.00 0.00 3.35
3227 9628 4.401202 TCGGCATACAACACTAATCAGAGA 59.599 41.667 0.00 0.00 0.00 3.10
3228 9629 5.069119 TCGGCATACAACACTAATCAGAGAT 59.931 40.000 0.00 0.00 0.00 2.75
3229 9630 5.755375 CGGCATACAACACTAATCAGAGATT 59.245 40.000 0.00 0.00 0.00 2.40
3230 9631 6.923508 CGGCATACAACACTAATCAGAGATTA 59.076 38.462 0.00 0.00 0.00 1.75
3231 9632 7.600375 CGGCATACAACACTAATCAGAGATTAT 59.400 37.037 0.40 0.00 0.00 1.28
3232 9633 8.930760 GGCATACAACACTAATCAGAGATTATC 58.069 37.037 0.40 0.00 0.00 1.75
3233 9634 8.930760 GCATACAACACTAATCAGAGATTATCC 58.069 37.037 0.40 0.00 0.00 2.59
3234 9635 9.987272 CATACAACACTAATCAGAGATTATCCA 57.013 33.333 0.40 0.00 0.00 3.41
3235 9636 9.988815 ATACAACACTAATCAGAGATTATCCAC 57.011 33.333 0.40 0.00 0.00 4.02
3236 9637 7.275920 ACAACACTAATCAGAGATTATCCACC 58.724 38.462 0.40 0.00 0.00 4.61
3237 9638 7.092891 ACAACACTAATCAGAGATTATCCACCA 60.093 37.037 0.40 0.00 0.00 4.17
3238 9639 6.821388 ACACTAATCAGAGATTATCCACCAC 58.179 40.000 0.40 0.00 0.00 4.16
3239 9640 6.613271 ACACTAATCAGAGATTATCCACCACT 59.387 38.462 0.40 0.00 0.00 4.00
3240 9641 7.151308 CACTAATCAGAGATTATCCACCACTC 58.849 42.308 0.40 0.00 0.00 3.51
3241 9642 6.841229 ACTAATCAGAGATTATCCACCACTCA 59.159 38.462 0.00 0.00 0.00 3.41
3242 9643 5.543507 ATCAGAGATTATCCACCACTCAC 57.456 43.478 0.00 0.00 0.00 3.51
3243 9644 4.352893 TCAGAGATTATCCACCACTCACA 58.647 43.478 0.00 0.00 0.00 3.58
3244 9645 4.160439 TCAGAGATTATCCACCACTCACAC 59.840 45.833 0.00 0.00 0.00 3.82
3245 9646 3.452627 AGAGATTATCCACCACTCACACC 59.547 47.826 0.00 0.00 0.00 4.16
3246 9647 3.181329 AGATTATCCACCACTCACACCA 58.819 45.455 0.00 0.00 0.00 4.17
3247 9648 2.851263 TTATCCACCACTCACACCAC 57.149 50.000 0.00 0.00 0.00 4.16
3248 9649 0.606096 TATCCACCACTCACACCACG 59.394 55.000 0.00 0.00 0.00 4.94
3249 9650 1.118965 ATCCACCACTCACACCACGA 61.119 55.000 0.00 0.00 0.00 4.35
3250 9651 1.594293 CCACCACTCACACCACGAC 60.594 63.158 0.00 0.00 0.00 4.34
3251 9652 1.142965 CACCACTCACACCACGACA 59.857 57.895 0.00 0.00 0.00 4.35
3252 9653 0.461163 CACCACTCACACCACGACAA 60.461 55.000 0.00 0.00 0.00 3.18
3253 9654 0.461339 ACCACTCACACCACGACAAC 60.461 55.000 0.00 0.00 0.00 3.32
3254 9655 0.461163 CCACTCACACCACGACAACA 60.461 55.000 0.00 0.00 0.00 3.33
3255 9656 1.581934 CACTCACACCACGACAACAT 58.418 50.000 0.00 0.00 0.00 2.71
3256 9657 1.261354 CACTCACACCACGACAACATG 59.739 52.381 0.00 0.00 0.00 3.21
3257 9658 1.138069 ACTCACACCACGACAACATGA 59.862 47.619 0.00 0.00 0.00 3.07
3258 9659 1.526887 CTCACACCACGACAACATGAC 59.473 52.381 0.00 0.00 0.00 3.06
3259 9660 1.134670 TCACACCACGACAACATGACA 60.135 47.619 0.00 0.00 0.00 3.58
3260 9661 1.668237 CACACCACGACAACATGACAA 59.332 47.619 0.00 0.00 0.00 3.18
3261 9662 1.939934 ACACCACGACAACATGACAAG 59.060 47.619 0.00 0.00 0.00 3.16
3262 9663 1.264020 CACCACGACAACATGACAAGG 59.736 52.381 0.00 0.00 0.00 3.61
3263 9664 1.140052 ACCACGACAACATGACAAGGA 59.860 47.619 0.00 0.00 0.00 3.36
3264 9665 2.217750 CCACGACAACATGACAAGGAA 58.782 47.619 0.00 0.00 0.00 3.36
3265 9666 2.616376 CCACGACAACATGACAAGGAAA 59.384 45.455 0.00 0.00 0.00 3.13
3266 9667 3.253188 CCACGACAACATGACAAGGAAAT 59.747 43.478 0.00 0.00 0.00 2.17
3267 9668 4.221342 CACGACAACATGACAAGGAAATG 58.779 43.478 0.00 0.00 0.00 2.32
3268 9669 4.024133 CACGACAACATGACAAGGAAATGA 60.024 41.667 0.00 0.00 0.00 2.57
3269 9670 4.024048 ACGACAACATGACAAGGAAATGAC 60.024 41.667 0.00 0.00 0.00 3.06
3270 9671 4.214119 CGACAACATGACAAGGAAATGACT 59.786 41.667 0.00 0.00 0.00 3.41
3271 9672 5.277974 CGACAACATGACAAGGAAATGACTT 60.278 40.000 0.00 0.00 0.00 3.01
3272 9673 6.469782 ACAACATGACAAGGAAATGACTTT 57.530 33.333 0.00 0.00 0.00 2.66
3273 9674 6.507023 ACAACATGACAAGGAAATGACTTTC 58.493 36.000 0.00 0.00 40.09 2.62
3286 9687 7.835634 GAAATGACTTTCCCAAGTAGAGTAG 57.164 40.000 0.00 0.00 43.79 2.57
3287 9688 4.803098 TGACTTTCCCAAGTAGAGTAGC 57.197 45.455 0.00 0.00 43.79 3.58
3288 9689 4.157246 TGACTTTCCCAAGTAGAGTAGCA 58.843 43.478 0.00 0.00 43.79 3.49
3289 9690 4.777896 TGACTTTCCCAAGTAGAGTAGCAT 59.222 41.667 0.00 0.00 43.79 3.79
3290 9691 5.091261 ACTTTCCCAAGTAGAGTAGCATG 57.909 43.478 0.00 0.00 41.81 4.06
3291 9692 4.080863 ACTTTCCCAAGTAGAGTAGCATGG 60.081 45.833 0.00 0.00 41.81 3.66
3292 9693 1.762957 TCCCAAGTAGAGTAGCATGGC 59.237 52.381 0.00 0.00 0.00 4.40
3293 9694 1.202698 CCCAAGTAGAGTAGCATGGCC 60.203 57.143 0.00 0.00 0.00 5.36
3294 9695 1.539065 CCAAGTAGAGTAGCATGGCCG 60.539 57.143 0.00 0.00 0.00 6.13
3295 9696 0.105039 AAGTAGAGTAGCATGGCCGC 59.895 55.000 0.00 0.00 0.00 6.53
3296 9697 1.661821 GTAGAGTAGCATGGCCGCG 60.662 63.158 0.00 0.00 36.85 6.46
3297 9698 2.125326 TAGAGTAGCATGGCCGCGT 61.125 57.895 4.92 0.00 36.85 6.01
3298 9699 2.071844 TAGAGTAGCATGGCCGCGTC 62.072 60.000 4.92 0.00 36.85 5.19
3299 9700 3.432051 GAGTAGCATGGCCGCGTCT 62.432 63.158 4.92 0.20 36.85 4.18
3300 9701 2.962253 GTAGCATGGCCGCGTCTC 60.962 66.667 4.92 0.00 36.85 3.36
3301 9702 3.457263 TAGCATGGCCGCGTCTCA 61.457 61.111 4.92 0.00 36.85 3.27
3302 9703 3.012859 TAGCATGGCCGCGTCTCAA 62.013 57.895 4.92 0.00 36.85 3.02
3303 9704 4.166011 GCATGGCCGCGTCTCAAC 62.166 66.667 4.92 0.00 0.00 3.18
3304 9705 3.499737 CATGGCCGCGTCTCAACC 61.500 66.667 4.92 0.00 0.00 3.77
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 1.299648 CATTTCAGGGCAGACGGGA 59.700 57.895 0.00 0.00 0.00 5.14
19 20 3.118992 GGGTGGAGGATTTGAAGCATTTC 60.119 47.826 0.00 0.00 0.00 2.17
72 130 9.712305 ATAGCGTTGCTCTAGTTGAATAAATAT 57.288 29.630 0.00 0.00 40.44 1.28
73 131 9.542462 AATAGCGTTGCTCTAGTTGAATAAATA 57.458 29.630 0.00 0.00 40.44 1.40
74 132 8.438676 AATAGCGTTGCTCTAGTTGAATAAAT 57.561 30.769 0.00 0.00 40.44 1.40
76 134 7.265673 AGAATAGCGTTGCTCTAGTTGAATAA 58.734 34.615 0.00 0.00 40.44 1.40
78 136 5.665459 AGAATAGCGTTGCTCTAGTTGAAT 58.335 37.500 0.00 0.00 40.44 2.57
80 138 4.720649 AGAATAGCGTTGCTCTAGTTGA 57.279 40.909 0.00 0.00 40.44 3.18
81 139 5.052304 CGTAAGAATAGCGTTGCTCTAGTTG 60.052 44.000 0.00 0.00 39.18 3.16
82 140 5.035443 CGTAAGAATAGCGTTGCTCTAGTT 58.965 41.667 0.00 0.00 39.18 2.24
83 141 4.096081 ACGTAAGAATAGCGTTGCTCTAGT 59.904 41.667 0.00 0.00 39.84 2.57
84 142 4.599047 ACGTAAGAATAGCGTTGCTCTAG 58.401 43.478 0.00 0.00 39.84 2.43
85 143 4.627611 ACGTAAGAATAGCGTTGCTCTA 57.372 40.909 0.00 0.00 39.84 2.43
86 144 3.505464 ACGTAAGAATAGCGTTGCTCT 57.495 42.857 0.00 0.00 39.84 4.09
87 145 3.177255 CGTACGTAAGAATAGCGTTGCTC 59.823 47.826 7.22 0.00 39.84 4.26
88 146 3.103738 CGTACGTAAGAATAGCGTTGCT 58.896 45.455 7.22 0.00 41.66 3.91
89 147 3.100817 TCGTACGTAAGAATAGCGTTGC 58.899 45.455 16.05 0.00 39.64 4.17
90 148 4.337763 ACTCGTACGTAAGAATAGCGTTG 58.662 43.478 16.05 1.35 39.64 4.10
91 149 4.606457 ACTCGTACGTAAGAATAGCGTT 57.394 40.909 16.05 0.00 39.64 4.84
92 150 4.606457 AACTCGTACGTAAGAATAGCGT 57.394 40.909 16.05 3.93 41.86 5.07
93 151 5.921784 AAAACTCGTACGTAAGAATAGCG 57.078 39.130 16.05 3.13 43.62 4.26
94 152 7.961325 AGTAAAACTCGTACGTAAGAATAGC 57.039 36.000 16.05 2.11 43.62 2.97
126 184 3.078837 TGCCGTCAAAAGGAGGAATAAC 58.921 45.455 0.00 0.00 33.18 1.89
127 185 3.078837 GTGCCGTCAAAAGGAGGAATAA 58.921 45.455 0.00 0.00 33.18 1.40
137 195 1.777030 AATCGTGCGTGCCGTCAAAA 61.777 50.000 3.39 0.00 0.00 2.44
177 235 8.190784 CCATTGTTGAACCAGAAATCCTATTAC 58.809 37.037 0.00 0.00 0.00 1.89
179 237 6.725834 ACCATTGTTGAACCAGAAATCCTATT 59.274 34.615 0.00 0.00 0.00 1.73
185 1754 7.065803 CGATAGTACCATTGTTGAACCAGAAAT 59.934 37.037 0.00 0.00 0.00 2.17
210 1779 0.521450 CGGGCTATGATCGATCGACG 60.521 60.000 22.06 12.89 44.09 5.12
219 1820 2.147387 GTGGGGGTCGGGCTATGAT 61.147 63.158 0.00 0.00 0.00 2.45
272 1873 6.042093 CCCCTCTATCTAGCTTGTTCATACAA 59.958 42.308 0.00 0.00 41.82 2.41
280 1881 1.221781 AGCCCCCTCTATCTAGCTTGT 59.778 52.381 0.00 0.00 0.00 3.16
282 1883 2.555670 CGTAGCCCCCTCTATCTAGCTT 60.556 54.545 0.00 0.00 0.00 3.74
340 1941 0.888619 TTCAGTCTACAGGGTGAGCG 59.111 55.000 0.00 0.00 0.00 5.03
394 2004 1.612676 AGTCAACAGCATGCACATGT 58.387 45.000 21.98 13.03 42.53 3.21
522 2149 3.397439 GCAGAGGCAGAGGCAGGA 61.397 66.667 0.00 0.00 43.71 3.86
566 2193 3.457234 CGCTCTATGTTGCATAGGAACA 58.543 45.455 14.01 6.55 37.70 3.18
603 2232 1.668101 GCTGGAGGACGTAGGGACTG 61.668 65.000 0.00 0.00 41.52 3.51
762 2412 3.009723 AGGTGGCACGATAAGTTTCATG 58.990 45.455 12.17 0.00 0.00 3.07
853 2523 3.567797 GCTCTTCCGCGTCCATGC 61.568 66.667 4.92 0.00 0.00 4.06
854 2524 1.091771 AATGCTCTTCCGCGTCCATG 61.092 55.000 4.92 0.00 0.00 3.66
860 2530 4.330074 CCCTATTTATAATGCTCTTCCGCG 59.670 45.833 0.00 0.00 0.00 6.46
890 2562 3.688185 AGCTGATGAAGTGTTGTGCATAG 59.312 43.478 0.00 0.00 0.00 2.23
963 2650 8.345565 CAAGTCACAACAAAGTTAAGCTCTTAT 58.654 33.333 0.00 0.00 0.00 1.73
965 2652 6.151144 ACAAGTCACAACAAAGTTAAGCTCTT 59.849 34.615 0.00 0.00 0.00 2.85
1042 2729 4.388499 GGCGGCGGAGGACAAGAA 62.388 66.667 9.78 0.00 0.00 2.52
1080 2773 1.442987 GTTGCCATAGCCATTGCCC 59.557 57.895 0.00 0.00 38.69 5.36
1088 2787 2.011453 CCGTTACCGTTGCCATAGC 58.989 57.895 0.00 0.00 40.48 2.97
1090 2789 0.321387 TTGCCGTTACCGTTGCCATA 60.321 50.000 0.00 0.00 0.00 2.74
1096 2795 3.348205 GCCGTTGCCGTTACCGTT 61.348 61.111 0.00 0.00 0.00 4.44
1102 2801 2.103340 GTTGTTGCCGTTGCCGTT 59.897 55.556 0.00 0.00 36.33 4.44
1118 2817 2.038269 CCGTTGCCGTAGCCATTGT 61.038 57.895 0.00 0.00 38.69 2.71
1120 2819 2.437716 CCCGTTGCCGTAGCCATT 60.438 61.111 0.00 0.00 38.69 3.16
1131 2830 2.825836 GGATCCAGCTGCCCGTTG 60.826 66.667 8.66 0.00 0.00 4.10
1151 2850 3.347216 GGGCAGCTCTTTTCATAGAACA 58.653 45.455 0.00 0.00 0.00 3.18
1173 2872 1.811266 CACGATGAACCCCAGAGCG 60.811 63.158 0.00 0.00 0.00 5.03
1287 2986 8.693625 CAGCTCTGGATGATTGATGAGTATATA 58.306 37.037 0.00 0.00 0.00 0.86
1291 2990 4.502777 GCAGCTCTGGATGATTGATGAGTA 60.503 45.833 0.00 0.00 0.00 2.59
1300 3011 3.361281 TTGAAAGCAGCTCTGGATGAT 57.639 42.857 0.00 0.00 0.00 2.45
1301 3012 2.865119 TTGAAAGCAGCTCTGGATGA 57.135 45.000 0.00 0.00 0.00 2.92
1302 3013 3.181489 GGAATTGAAAGCAGCTCTGGATG 60.181 47.826 0.00 0.00 0.00 3.51
1303 3014 3.022406 GGAATTGAAAGCAGCTCTGGAT 58.978 45.455 0.00 0.00 0.00 3.41
1304 3015 2.040813 AGGAATTGAAAGCAGCTCTGGA 59.959 45.455 0.00 0.00 0.00 3.86
1305 3016 2.422832 GAGGAATTGAAAGCAGCTCTGG 59.577 50.000 0.00 0.00 0.00 3.86
1306 3017 3.079578 TGAGGAATTGAAAGCAGCTCTG 58.920 45.455 0.00 0.00 0.00 3.35
1307 3018 3.080319 GTGAGGAATTGAAAGCAGCTCT 58.920 45.455 0.00 0.00 0.00 4.09
1308 3019 2.159599 CGTGAGGAATTGAAAGCAGCTC 60.160 50.000 0.00 0.00 0.00 4.09
1309 3020 1.808945 CGTGAGGAATTGAAAGCAGCT 59.191 47.619 0.00 0.00 0.00 4.24
1310 3021 1.537202 ACGTGAGGAATTGAAAGCAGC 59.463 47.619 0.00 0.00 0.00 5.25
1311 3022 3.181530 CGTACGTGAGGAATTGAAAGCAG 60.182 47.826 7.22 0.00 0.00 4.24
1312 3023 2.734606 CGTACGTGAGGAATTGAAAGCA 59.265 45.455 7.22 0.00 0.00 3.91
1313 3024 2.991190 TCGTACGTGAGGAATTGAAAGC 59.009 45.455 16.05 0.00 0.00 3.51
1314 3025 3.059044 CGTCGTACGTGAGGAATTGAAAG 59.941 47.826 16.05 0.00 36.74 2.62
1315 3026 2.981805 CGTCGTACGTGAGGAATTGAAA 59.018 45.455 16.05 0.00 36.74 2.69
1316 3027 2.587956 CGTCGTACGTGAGGAATTGAA 58.412 47.619 16.05 0.00 36.74 2.69
1317 3028 1.135603 CCGTCGTACGTGAGGAATTGA 60.136 52.381 16.05 0.00 40.58 2.57
1318 3029 1.265568 CCGTCGTACGTGAGGAATTG 58.734 55.000 16.05 0.00 40.58 2.32
1319 3030 0.883833 ACCGTCGTACGTGAGGAATT 59.116 50.000 24.63 7.48 40.58 2.17
1320 3031 1.398390 GTACCGTCGTACGTGAGGAAT 59.602 52.381 24.63 11.71 40.58 3.01
1321 3032 0.796312 GTACCGTCGTACGTGAGGAA 59.204 55.000 24.63 1.18 40.58 3.36
1322 3033 2.456000 GTACCGTCGTACGTGAGGA 58.544 57.895 24.63 7.51 40.58 3.71
1335 3046 1.331138 CTCAGCTTAGACCTCGTACCG 59.669 57.143 0.00 0.00 0.00 4.02
1337 3048 3.678915 GTCTCAGCTTAGACCTCGTAC 57.321 52.381 15.89 0.00 40.06 3.67
1344 3055 1.226717 CCGCGGTCTCAGCTTAGAC 60.227 63.158 19.50 18.06 44.31 2.59
1345 3056 3.064987 GCCGCGGTCTCAGCTTAGA 62.065 63.158 28.70 0.00 0.00 2.10
1346 3057 2.583593 GCCGCGGTCTCAGCTTAG 60.584 66.667 28.70 0.00 0.00 2.18
1347 3058 2.721167 ATGCCGCGGTCTCAGCTTA 61.721 57.895 28.70 1.47 0.00 3.09
1349 3060 4.827087 CATGCCGCGGTCTCAGCT 62.827 66.667 28.70 0.00 0.00 4.24
1351 3062 2.976692 TATGCATGCCGCGGTCTCAG 62.977 60.000 28.70 13.52 46.97 3.35
1352 3063 2.381838 ATATGCATGCCGCGGTCTCA 62.382 55.000 28.70 17.17 46.97 3.27
1357 3068 2.634982 AAAATATATGCATGCCGCGG 57.365 45.000 24.05 24.05 46.97 6.46
1358 3069 3.825308 AGAAAAATATATGCATGCCGCG 58.175 40.909 16.68 0.00 46.97 6.46
1359 3070 4.797471 TGAGAAAAATATATGCATGCCGC 58.203 39.130 16.68 0.00 42.89 6.53
1360 3071 5.396484 CCTGAGAAAAATATATGCATGCCG 58.604 41.667 16.68 0.00 0.00 5.69
1362 3073 5.047519 AGCCCTGAGAAAAATATATGCATGC 60.048 40.000 11.82 11.82 0.00 4.06
1366 3089 5.532406 TCACAGCCCTGAGAAAAATATATGC 59.468 40.000 1.69 0.00 0.00 3.14
1368 3091 5.760253 CGTCACAGCCCTGAGAAAAATATAT 59.240 40.000 1.69 0.00 32.29 0.86
1372 3095 2.154462 CGTCACAGCCCTGAGAAAAAT 58.846 47.619 1.69 0.00 32.29 1.82
1595 3320 3.680777 ACCAGGACTTTCCCTCAAAAA 57.319 42.857 0.00 0.00 37.19 1.94
1597 3322 2.038033 CGTACCAGGACTTTCCCTCAAA 59.962 50.000 0.00 0.00 37.19 2.69
1598 3323 1.621814 CGTACCAGGACTTTCCCTCAA 59.378 52.381 0.00 0.00 37.19 3.02
1600 3325 1.264295 ACGTACCAGGACTTTCCCTC 58.736 55.000 0.00 0.00 37.19 4.30
1601 3326 2.174360 GTACGTACCAGGACTTTCCCT 58.826 52.381 15.00 0.00 37.19 4.20
1602 3327 2.174360 AGTACGTACCAGGACTTTCCC 58.826 52.381 21.80 0.00 37.19 3.97
1603 3328 4.013050 AGTAGTACGTACCAGGACTTTCC 58.987 47.826 21.80 0.00 31.99 3.13
1604 3329 5.220491 CGTAGTAGTACGTACCAGGACTTTC 60.220 48.000 21.80 13.83 45.84 2.62
1605 3330 4.631813 CGTAGTAGTACGTACCAGGACTTT 59.368 45.833 21.80 3.67 45.84 2.66
1606 3331 4.184629 CGTAGTAGTACGTACCAGGACTT 58.815 47.826 21.80 4.41 45.84 3.01
1607 3332 3.786635 CGTAGTAGTACGTACCAGGACT 58.213 50.000 21.80 19.74 45.84 3.85
1631 3356 2.661866 AGAAGGTGTGCGTCGTGC 60.662 61.111 0.00 0.00 46.70 5.34
1632 3357 2.943345 GCAGAAGGTGTGCGTCGTG 61.943 63.158 0.00 0.00 0.00 4.35
1633 3358 2.661866 GCAGAAGGTGTGCGTCGT 60.662 61.111 0.00 0.00 0.00 4.34
1634 3359 2.029288 ATGCAGAAGGTGTGCGTCG 61.029 57.895 0.00 0.00 44.35 5.12
1635 3360 1.499056 CATGCAGAAGGTGTGCGTC 59.501 57.895 0.00 0.00 44.35 5.19
1636 3361 2.620112 GCATGCAGAAGGTGTGCGT 61.620 57.895 14.21 0.00 44.35 5.24
1637 3362 1.929806 ATGCATGCAGAAGGTGTGCG 61.930 55.000 26.69 0.00 44.35 5.34
1638 3363 0.457853 CATGCATGCAGAAGGTGTGC 60.458 55.000 26.69 0.00 41.59 4.57
1639 3364 3.713936 CATGCATGCAGAAGGTGTG 57.286 52.632 26.69 13.48 0.00 3.82
1651 3376 6.106648 ACTCTACTATACACATGCATGCAT 57.893 37.500 27.46 27.46 37.08 3.96
1673 3398 4.732672 AGAAACGGAGGGAGTACATTAC 57.267 45.455 0.00 0.00 0.00 1.89
1675 3400 5.750352 TTTAGAAACGGAGGGAGTACATT 57.250 39.130 0.00 0.00 0.00 2.71
1677 3402 8.537728 TTATATTTAGAAACGGAGGGAGTACA 57.462 34.615 0.00 0.00 0.00 2.90
1682 3407 5.367352 TGGCTTATATTTAGAAACGGAGGGA 59.633 40.000 0.00 0.00 0.00 4.20
1683 3408 5.469084 GTGGCTTATATTTAGAAACGGAGGG 59.531 44.000 0.00 0.00 0.00 4.30
1684 3409 6.202954 CAGTGGCTTATATTTAGAAACGGAGG 59.797 42.308 0.00 0.00 0.00 4.30
1685 3410 6.984474 TCAGTGGCTTATATTTAGAAACGGAG 59.016 38.462 0.00 0.00 0.00 4.63
1686 3411 6.759827 GTCAGTGGCTTATATTTAGAAACGGA 59.240 38.462 0.00 0.00 0.00 4.69
1687 3412 6.018180 GGTCAGTGGCTTATATTTAGAAACGG 60.018 42.308 0.00 0.00 0.00 4.44
1688 3413 6.537301 TGGTCAGTGGCTTATATTTAGAAACG 59.463 38.462 0.00 0.00 0.00 3.60
1689 3414 7.465513 CGTGGTCAGTGGCTTATATTTAGAAAC 60.466 40.741 0.00 0.00 0.00 2.78
1690 3415 6.537301 CGTGGTCAGTGGCTTATATTTAGAAA 59.463 38.462 0.00 0.00 0.00 2.52
1691 3416 6.046593 CGTGGTCAGTGGCTTATATTTAGAA 58.953 40.000 0.00 0.00 0.00 2.10
1693 3418 4.211374 GCGTGGTCAGTGGCTTATATTTAG 59.789 45.833 0.00 0.00 0.00 1.85
1694 3419 4.124238 GCGTGGTCAGTGGCTTATATTTA 58.876 43.478 0.00 0.00 0.00 1.40
1695 3420 2.943033 GCGTGGTCAGTGGCTTATATTT 59.057 45.455 0.00 0.00 0.00 1.40
1696 3421 2.170607 AGCGTGGTCAGTGGCTTATATT 59.829 45.455 0.00 0.00 30.04 1.28
1698 3423 1.136305 GAGCGTGGTCAGTGGCTTATA 59.864 52.381 0.00 0.00 35.54 0.98
1699 3424 0.108138 GAGCGTGGTCAGTGGCTTAT 60.108 55.000 0.00 0.00 35.54 1.73
1700 3425 1.185618 AGAGCGTGGTCAGTGGCTTA 61.186 55.000 0.00 0.00 35.54 3.09
1701 3426 2.031163 GAGCGTGGTCAGTGGCTT 59.969 61.111 0.00 0.00 35.54 4.35
1704 3429 2.740055 GCAGAGCGTGGTCAGTGG 60.740 66.667 1.55 0.00 0.00 4.00
1705 3430 0.952497 ATTGCAGAGCGTGGTCAGTG 60.952 55.000 1.55 0.00 0.00 3.66
1708 3433 0.671472 CAGATTGCAGAGCGTGGTCA 60.671 55.000 1.55 0.00 0.00 4.02
1824 7149 4.446413 AGGTTTAGCGTCGGCCCG 62.446 66.667 0.00 0.00 41.24 6.13
1836 7161 0.250513 GGATGAGCTCGGTGAGGTTT 59.749 55.000 9.64 0.00 40.67 3.27
2164 7489 2.668212 GCTGTACTGCCGCACCAA 60.668 61.111 13.37 0.00 0.00 3.67
2337 7662 3.985019 TTCCTTGCTTTCCCGTATGTA 57.015 42.857 0.00 0.00 0.00 2.29
2340 7665 3.016736 CACATTCCTTGCTTTCCCGTAT 58.983 45.455 0.00 0.00 0.00 3.06
2342 7667 1.247567 CACATTCCTTGCTTTCCCGT 58.752 50.000 0.00 0.00 0.00 5.28
2406 7731 8.517878 GTGTACAGTGAACTTATTACAGAGGTA 58.482 37.037 0.00 0.00 0.00 3.08
2457 7782 3.684103 TCTGCCAAAACGTAACAACAG 57.316 42.857 0.00 0.00 0.00 3.16
2662 9055 1.273606 CCATGTCCGATTCCGAGCTAT 59.726 52.381 0.00 0.00 38.22 2.97
2675 9068 6.162777 GCTCAAGATTAGATACTCCATGTCC 58.837 44.000 0.00 0.00 0.00 4.02
2683 9076 6.825213 TGCATTTGTGCTCAAGATTAGATACT 59.175 34.615 0.98 0.00 34.88 2.12
2695 9088 2.918345 GCGGGTGCATTTGTGCTCA 61.918 57.895 0.00 0.00 42.15 4.26
2696 9089 2.126346 GCGGGTGCATTTGTGCTC 60.126 61.111 0.00 0.00 42.15 4.26
2771 9164 8.514594 GGATGTTAGAACTTTCATTGATGTTCA 58.485 33.333 23.11 13.26 40.62 3.18
2781 9174 6.707440 TTTTGCAGGATGTTAGAACTTTCA 57.293 33.333 0.00 0.00 39.31 2.69
2889 9288 1.646540 CGAGGTGCGTGCAAGAAAA 59.353 52.632 2.99 0.00 34.64 2.29
2890 9289 2.250939 CCGAGGTGCGTGCAAGAAA 61.251 57.895 2.99 0.00 38.67 2.52
2893 9292 3.958147 ATCCCGAGGTGCGTGCAAG 62.958 63.158 0.00 0.00 38.67 4.01
2900 9299 0.744771 GGAAAGACATCCCGAGGTGC 60.745 60.000 0.00 0.00 33.05 5.01
2903 9302 1.144057 CCGGAAAGACATCCCGAGG 59.856 63.158 0.00 0.00 45.58 4.63
2907 9306 1.521681 CGCTCCGGAAAGACATCCC 60.522 63.158 5.23 0.00 36.00 3.85
2908 9307 0.528684 CTCGCTCCGGAAAGACATCC 60.529 60.000 5.23 0.00 36.05 3.51
2909 9308 0.456221 TCTCGCTCCGGAAAGACATC 59.544 55.000 5.23 0.00 0.00 3.06
2910 9309 1.115467 ATCTCGCTCCGGAAAGACAT 58.885 50.000 5.23 0.00 0.00 3.06
2911 9310 1.758936 TATCTCGCTCCGGAAAGACA 58.241 50.000 5.23 0.00 0.00 3.41
2912 9311 3.053455 CAATATCTCGCTCCGGAAAGAC 58.947 50.000 5.23 0.00 0.00 3.01
2914 9313 1.795286 GCAATATCTCGCTCCGGAAAG 59.205 52.381 5.23 3.53 0.00 2.62
2916 9315 0.750249 TGCAATATCTCGCTCCGGAA 59.250 50.000 5.23 0.00 0.00 4.30
2918 9317 0.668706 CCTGCAATATCTCGCTCCGG 60.669 60.000 0.00 0.00 0.00 5.14
2920 9319 2.289320 ACATCCTGCAATATCTCGCTCC 60.289 50.000 0.00 0.00 0.00 4.70
2924 9325 3.732212 TCCAACATCCTGCAATATCTCG 58.268 45.455 0.00 0.00 0.00 4.04
2927 9328 6.212888 AGTTTTCCAACATCCTGCAATATC 57.787 37.500 0.00 0.00 35.05 1.63
2930 9331 4.101430 ACAAGTTTTCCAACATCCTGCAAT 59.899 37.500 0.00 0.00 35.05 3.56
2970 9371 8.545229 TTGTGAATGAACATCAACAAGTTTTT 57.455 26.923 9.56 0.00 0.00 1.94
2971 9372 8.545229 TTTGTGAATGAACATCAACAAGTTTT 57.455 26.923 11.89 0.00 31.81 2.43
2972 9373 8.545229 TTTTGTGAATGAACATCAACAAGTTT 57.455 26.923 11.89 0.00 31.81 2.66
2973 9374 8.545229 TTTTTGTGAATGAACATCAACAAGTT 57.455 26.923 11.89 0.00 31.81 2.66
3029 9430 9.190858 GCACATGTATGAACAGTAAATTCAAAA 57.809 29.630 0.00 0.00 39.43 2.44
3030 9431 8.355913 TGCACATGTATGAACAGTAAATTCAAA 58.644 29.630 0.00 0.00 39.43 2.69
3031 9432 7.880105 TGCACATGTATGAACAGTAAATTCAA 58.120 30.769 0.00 0.00 39.43 2.69
3032 9433 7.446001 TGCACATGTATGAACAGTAAATTCA 57.554 32.000 0.00 0.00 39.49 2.57
3033 9434 8.915871 AATGCACATGTATGAACAGTAAATTC 57.084 30.769 0.00 0.00 39.49 2.17
3034 9435 9.142515 CAAATGCACATGTATGAACAGTAAATT 57.857 29.630 0.00 0.00 39.49 1.82
3035 9436 8.306038 ACAAATGCACATGTATGAACAGTAAAT 58.694 29.630 0.00 0.00 39.49 1.40
3036 9437 7.594386 CACAAATGCACATGTATGAACAGTAAA 59.406 33.333 0.00 0.00 39.49 2.01
3037 9438 7.083230 CACAAATGCACATGTATGAACAGTAA 58.917 34.615 0.00 0.00 39.49 2.24
3038 9439 6.610456 CACAAATGCACATGTATGAACAGTA 58.390 36.000 0.00 0.00 39.49 2.74
3039 9440 5.463286 CACAAATGCACATGTATGAACAGT 58.537 37.500 0.00 0.00 39.49 3.55
3055 9456 7.113965 GTGTTACTTCAATCTTGAGCACAAATG 59.886 37.037 0.00 0.00 38.61 2.32
3056 9457 7.013655 AGTGTTACTTCAATCTTGAGCACAAAT 59.986 33.333 0.00 0.00 38.61 2.32
3057 9458 6.318648 AGTGTTACTTCAATCTTGAGCACAAA 59.681 34.615 0.00 0.00 38.61 2.83
3058 9459 5.822519 AGTGTTACTTCAATCTTGAGCACAA 59.177 36.000 0.00 0.00 38.61 3.33
3059 9460 5.368145 AGTGTTACTTCAATCTTGAGCACA 58.632 37.500 0.00 0.00 38.61 4.57
3060 9461 5.931441 AGTGTTACTTCAATCTTGAGCAC 57.069 39.130 0.00 0.00 38.61 4.40
3061 9462 6.942532 AAAGTGTTACTTCAATCTTGAGCA 57.057 33.333 0.00 0.00 37.47 4.26
3062 9463 6.142958 GCAAAAGTGTTACTTCAATCTTGAGC 59.857 38.462 7.06 0.00 37.47 4.26
3063 9464 7.420800 AGCAAAAGTGTTACTTCAATCTTGAG 58.579 34.615 7.06 0.00 37.47 3.02
3064 9465 7.333528 AGCAAAAGTGTTACTTCAATCTTGA 57.666 32.000 7.06 0.00 37.47 3.02
3065 9466 7.992180 AAGCAAAAGTGTTACTTCAATCTTG 57.008 32.000 0.00 0.00 37.47 3.02
3066 9467 8.034804 ACAAAGCAAAAGTGTTACTTCAATCTT 58.965 29.630 0.00 0.00 37.47 2.40
3067 9468 7.489113 CACAAAGCAAAAGTGTTACTTCAATCT 59.511 33.333 0.00 0.00 37.47 2.40
3068 9469 7.612266 CACAAAGCAAAAGTGTTACTTCAATC 58.388 34.615 0.00 0.00 37.47 2.67
3069 9470 6.035975 GCACAAAGCAAAAGTGTTACTTCAAT 59.964 34.615 0.00 0.00 44.79 2.57
3070 9471 5.347364 GCACAAAGCAAAAGTGTTACTTCAA 59.653 36.000 0.00 0.00 44.79 2.69
3071 9472 4.862018 GCACAAAGCAAAAGTGTTACTTCA 59.138 37.500 0.00 0.00 44.79 3.02
3072 9473 5.375544 GCACAAAGCAAAAGTGTTACTTC 57.624 39.130 0.00 0.00 44.79 3.01
3102 9503 6.870971 TTATTCCAAGCGAAAGTGTTACTT 57.129 33.333 0.00 0.00 40.80 2.24
3103 9504 8.556213 TTATTATTCCAAGCGAAAGTGTTACT 57.444 30.769 0.00 0.00 33.08 2.24
3104 9505 9.783256 AATTATTATTCCAAGCGAAAGTGTTAC 57.217 29.630 0.00 0.00 33.08 2.50
3133 9534 4.500035 GCCCTTTCACGGTGTATTCAAAAA 60.500 41.667 8.17 0.00 0.00 1.94
3134 9535 3.004944 GCCCTTTCACGGTGTATTCAAAA 59.995 43.478 8.17 0.00 0.00 2.44
3135 9536 2.554893 GCCCTTTCACGGTGTATTCAAA 59.445 45.455 8.17 0.17 0.00 2.69
3136 9537 2.156098 GCCCTTTCACGGTGTATTCAA 58.844 47.619 8.17 0.00 0.00 2.69
3137 9538 1.816074 GCCCTTTCACGGTGTATTCA 58.184 50.000 8.17 0.00 0.00 2.57
3138 9539 0.725117 CGCCCTTTCACGGTGTATTC 59.275 55.000 8.17 0.00 0.00 1.75
3139 9540 0.035739 ACGCCCTTTCACGGTGTATT 59.964 50.000 8.17 0.00 42.30 1.89
3140 9541 0.896923 TACGCCCTTTCACGGTGTAT 59.103 50.000 8.17 0.00 42.30 2.29
3141 9542 2.349701 TACGCCCTTTCACGGTGTA 58.650 52.632 8.17 0.00 42.30 2.90
3142 9543 0.390735 GATACGCCCTTTCACGGTGT 60.391 55.000 8.17 0.00 45.86 4.16
3143 9544 0.390603 TGATACGCCCTTTCACGGTG 60.391 55.000 0.56 0.56 36.92 4.94
3144 9545 0.539986 ATGATACGCCCTTTCACGGT 59.460 50.000 0.00 0.00 0.00 4.83
3145 9546 1.663695 AATGATACGCCCTTTCACGG 58.336 50.000 0.00 0.00 0.00 4.94
3146 9547 2.936498 AGAAATGATACGCCCTTTCACG 59.064 45.455 0.00 0.00 31.55 4.35
3147 9548 3.938963 TGAGAAATGATACGCCCTTTCAC 59.061 43.478 0.00 0.00 31.55 3.18
3148 9549 4.214986 TGAGAAATGATACGCCCTTTCA 57.785 40.909 0.00 0.00 31.55 2.69
3149 9550 6.650807 TGATATGAGAAATGATACGCCCTTTC 59.349 38.462 0.00 0.00 0.00 2.62
3150 9551 6.428159 GTGATATGAGAAATGATACGCCCTTT 59.572 38.462 0.00 0.00 0.00 3.11
3151 9552 5.934625 GTGATATGAGAAATGATACGCCCTT 59.065 40.000 0.00 0.00 0.00 3.95
3152 9553 5.482908 GTGATATGAGAAATGATACGCCCT 58.517 41.667 0.00 0.00 0.00 5.19
3153 9554 4.327357 CGTGATATGAGAAATGATACGCCC 59.673 45.833 0.00 0.00 0.00 6.13
3154 9555 5.161358 TCGTGATATGAGAAATGATACGCC 58.839 41.667 0.00 0.00 0.00 5.68
3155 9556 6.877556 ATCGTGATATGAGAAATGATACGC 57.122 37.500 0.00 0.00 0.00 4.42
3156 9557 7.166638 GGCTATCGTGATATGAGAAATGATACG 59.833 40.741 0.00 0.00 0.00 3.06
3157 9558 7.976175 TGGCTATCGTGATATGAGAAATGATAC 59.024 37.037 0.00 0.00 0.00 2.24
3158 9559 8.066612 TGGCTATCGTGATATGAGAAATGATA 57.933 34.615 0.00 0.00 0.00 2.15
3159 9560 6.939622 TGGCTATCGTGATATGAGAAATGAT 58.060 36.000 0.00 0.00 0.00 2.45
3160 9561 6.345096 TGGCTATCGTGATATGAGAAATGA 57.655 37.500 0.00 0.00 0.00 2.57
3161 9562 6.401903 GCTTGGCTATCGTGATATGAGAAATG 60.402 42.308 0.00 0.00 0.00 2.32
3162 9563 5.641209 GCTTGGCTATCGTGATATGAGAAAT 59.359 40.000 0.00 0.00 0.00 2.17
3163 9564 4.991056 GCTTGGCTATCGTGATATGAGAAA 59.009 41.667 0.00 0.00 0.00 2.52
3164 9565 4.560128 GCTTGGCTATCGTGATATGAGAA 58.440 43.478 0.00 0.00 0.00 2.87
3165 9566 3.366374 CGCTTGGCTATCGTGATATGAGA 60.366 47.826 0.00 0.00 0.00 3.27
3166 9567 2.919859 CGCTTGGCTATCGTGATATGAG 59.080 50.000 0.00 0.00 0.00 2.90
3167 9568 2.352715 CCGCTTGGCTATCGTGATATGA 60.353 50.000 0.00 0.00 0.00 2.15
3168 9569 1.995484 CCGCTTGGCTATCGTGATATG 59.005 52.381 0.00 0.00 0.00 1.78
3169 9570 2.370281 CCGCTTGGCTATCGTGATAT 57.630 50.000 0.00 0.00 0.00 1.63
3170 9571 3.886044 CCGCTTGGCTATCGTGATA 57.114 52.632 0.00 0.00 0.00 2.15
3171 9572 4.758692 CCGCTTGGCTATCGTGAT 57.241 55.556 0.00 0.00 0.00 3.06
3181 9582 1.146358 GCGTTCTACTAGCCGCTTGG 61.146 60.000 0.00 0.00 42.66 3.61
3182 9583 1.146358 GGCGTTCTACTAGCCGCTTG 61.146 60.000 15.27 0.00 45.11 4.01
3183 9584 1.141234 GGCGTTCTACTAGCCGCTT 59.859 57.895 15.27 0.00 45.11 4.68
3184 9585 2.806237 GGCGTTCTACTAGCCGCT 59.194 61.111 15.27 0.00 45.11 5.52
3188 9589 3.253416 CGAAGGGCGTTCTACTAGC 57.747 57.895 16.87 0.00 32.33 3.42
3202 9603 5.109210 TCTGATTAGTGTTGTATGCCGAAG 58.891 41.667 0.00 0.00 0.00 3.79
3203 9604 5.079689 TCTGATTAGTGTTGTATGCCGAA 57.920 39.130 0.00 0.00 0.00 4.30
3204 9605 4.401202 TCTCTGATTAGTGTTGTATGCCGA 59.599 41.667 0.00 0.00 0.00 5.54
3205 9606 4.682787 TCTCTGATTAGTGTTGTATGCCG 58.317 43.478 0.00 0.00 0.00 5.69
3206 9607 8.839310 ATAATCTCTGATTAGTGTTGTATGCC 57.161 34.615 6.25 0.00 0.00 4.40
3207 9608 8.930760 GGATAATCTCTGATTAGTGTTGTATGC 58.069 37.037 6.25 0.00 0.00 3.14
3208 9609 9.987272 TGGATAATCTCTGATTAGTGTTGTATG 57.013 33.333 6.25 0.00 0.00 2.39
3209 9610 9.988815 GTGGATAATCTCTGATTAGTGTTGTAT 57.011 33.333 6.25 0.00 0.00 2.29
3210 9611 8.421784 GGTGGATAATCTCTGATTAGTGTTGTA 58.578 37.037 6.25 0.00 0.00 2.41
3211 9612 7.092891 TGGTGGATAATCTCTGATTAGTGTTGT 60.093 37.037 6.25 0.00 0.00 3.32
3212 9613 7.225538 GTGGTGGATAATCTCTGATTAGTGTTG 59.774 40.741 6.25 0.00 0.00 3.33
3213 9614 7.126421 AGTGGTGGATAATCTCTGATTAGTGTT 59.874 37.037 6.25 0.00 0.00 3.32
3214 9615 6.613271 AGTGGTGGATAATCTCTGATTAGTGT 59.387 38.462 6.25 0.00 0.00 3.55
3215 9616 7.060383 AGTGGTGGATAATCTCTGATTAGTG 57.940 40.000 6.25 0.00 0.00 2.74
3216 9617 6.841229 TGAGTGGTGGATAATCTCTGATTAGT 59.159 38.462 6.25 0.00 0.00 2.24
3217 9618 7.151308 GTGAGTGGTGGATAATCTCTGATTAG 58.849 42.308 6.25 0.00 0.00 1.73
3218 9619 6.611236 TGTGAGTGGTGGATAATCTCTGATTA 59.389 38.462 2.99 2.99 0.00 1.75
3219 9620 5.426509 TGTGAGTGGTGGATAATCTCTGATT 59.573 40.000 0.00 0.00 0.00 2.57
3220 9621 4.964897 TGTGAGTGGTGGATAATCTCTGAT 59.035 41.667 0.00 0.00 0.00 2.90
3221 9622 4.160439 GTGTGAGTGGTGGATAATCTCTGA 59.840 45.833 0.00 0.00 0.00 3.27
3222 9623 4.437239 GTGTGAGTGGTGGATAATCTCTG 58.563 47.826 0.00 0.00 0.00 3.35
3223 9624 3.452627 GGTGTGAGTGGTGGATAATCTCT 59.547 47.826 0.00 0.00 0.00 3.10
3224 9625 3.197766 TGGTGTGAGTGGTGGATAATCTC 59.802 47.826 0.00 0.00 0.00 2.75
3225 9626 3.055094 GTGGTGTGAGTGGTGGATAATCT 60.055 47.826 0.00 0.00 0.00 2.40
3226 9627 3.270877 GTGGTGTGAGTGGTGGATAATC 58.729 50.000 0.00 0.00 0.00 1.75
3227 9628 2.354704 CGTGGTGTGAGTGGTGGATAAT 60.355 50.000 0.00 0.00 0.00 1.28
3228 9629 1.001520 CGTGGTGTGAGTGGTGGATAA 59.998 52.381 0.00 0.00 0.00 1.75
3229 9630 0.606096 CGTGGTGTGAGTGGTGGATA 59.394 55.000 0.00 0.00 0.00 2.59
3230 9631 1.118965 TCGTGGTGTGAGTGGTGGAT 61.119 55.000 0.00 0.00 0.00 3.41
3231 9632 1.758906 TCGTGGTGTGAGTGGTGGA 60.759 57.895 0.00 0.00 0.00 4.02
3232 9633 1.594293 GTCGTGGTGTGAGTGGTGG 60.594 63.158 0.00 0.00 0.00 4.61
3233 9634 0.461163 TTGTCGTGGTGTGAGTGGTG 60.461 55.000 0.00 0.00 0.00 4.17
3234 9635 0.461339 GTTGTCGTGGTGTGAGTGGT 60.461 55.000 0.00 0.00 0.00 4.16
3235 9636 0.461163 TGTTGTCGTGGTGTGAGTGG 60.461 55.000 0.00 0.00 0.00 4.00
3236 9637 1.261354 CATGTTGTCGTGGTGTGAGTG 59.739 52.381 0.00 0.00 0.00 3.51
3237 9638 1.138069 TCATGTTGTCGTGGTGTGAGT 59.862 47.619 0.00 0.00 0.00 3.41
3238 9639 1.526887 GTCATGTTGTCGTGGTGTGAG 59.473 52.381 0.00 0.00 0.00 3.51
3239 9640 1.134670 TGTCATGTTGTCGTGGTGTGA 60.135 47.619 0.00 0.00 0.00 3.58
3240 9641 1.294857 TGTCATGTTGTCGTGGTGTG 58.705 50.000 0.00 0.00 0.00 3.82
3241 9642 1.939934 CTTGTCATGTTGTCGTGGTGT 59.060 47.619 0.00 0.00 0.00 4.16
3242 9643 1.264020 CCTTGTCATGTTGTCGTGGTG 59.736 52.381 0.00 0.00 0.00 4.17
3243 9644 1.140052 TCCTTGTCATGTTGTCGTGGT 59.860 47.619 0.00 0.00 0.00 4.16
3244 9645 1.877637 TCCTTGTCATGTTGTCGTGG 58.122 50.000 0.00 0.00 0.00 4.94
3245 9646 3.961477 TTTCCTTGTCATGTTGTCGTG 57.039 42.857 0.00 0.00 0.00 4.35
3246 9647 4.024048 GTCATTTCCTTGTCATGTTGTCGT 60.024 41.667 0.00 0.00 0.00 4.34
3247 9648 4.214119 AGTCATTTCCTTGTCATGTTGTCG 59.786 41.667 0.00 0.00 0.00 4.35
3248 9649 5.695851 AGTCATTTCCTTGTCATGTTGTC 57.304 39.130 0.00 0.00 0.00 3.18
3249 9650 6.469782 AAAGTCATTTCCTTGTCATGTTGT 57.530 33.333 0.00 0.00 0.00 3.32
3250 9651 6.998258 GAAAGTCATTTCCTTGTCATGTTG 57.002 37.500 0.00 0.00 39.16 3.33
3262 9663 6.314152 GCTACTCTACTTGGGAAAGTCATTTC 59.686 42.308 0.00 0.00 43.48 2.17
3263 9664 6.174049 GCTACTCTACTTGGGAAAGTCATTT 58.826 40.000 0.00 0.00 34.37 2.32
3264 9665 5.248477 TGCTACTCTACTTGGGAAAGTCATT 59.752 40.000 0.00 0.00 34.37 2.57
3265 9666 4.777896 TGCTACTCTACTTGGGAAAGTCAT 59.222 41.667 0.00 0.00 34.37 3.06
3266 9667 4.157246 TGCTACTCTACTTGGGAAAGTCA 58.843 43.478 0.00 0.00 34.37 3.41
3267 9668 4.803098 TGCTACTCTACTTGGGAAAGTC 57.197 45.455 0.00 0.00 34.37 3.01
3268 9669 4.080863 CCATGCTACTCTACTTGGGAAAGT 60.081 45.833 0.00 0.00 36.82 2.66
3269 9670 4.446371 CCATGCTACTCTACTTGGGAAAG 58.554 47.826 0.00 0.00 0.00 2.62
3270 9671 3.370527 GCCATGCTACTCTACTTGGGAAA 60.371 47.826 0.00 0.00 33.00 3.13
3271 9672 2.170607 GCCATGCTACTCTACTTGGGAA 59.829 50.000 0.00 0.00 33.00 3.97
3272 9673 1.762957 GCCATGCTACTCTACTTGGGA 59.237 52.381 0.00 0.00 33.00 4.37
3273 9674 1.202698 GGCCATGCTACTCTACTTGGG 60.203 57.143 0.00 0.00 33.00 4.12
3274 9675 1.539065 CGGCCATGCTACTCTACTTGG 60.539 57.143 2.24 0.00 34.93 3.61
3275 9676 1.858091 CGGCCATGCTACTCTACTTG 58.142 55.000 2.24 0.00 0.00 3.16
3276 9677 0.105039 GCGGCCATGCTACTCTACTT 59.895 55.000 2.24 0.00 0.00 2.24
3277 9678 1.742768 GCGGCCATGCTACTCTACT 59.257 57.895 2.24 0.00 0.00 2.57
3278 9679 1.661821 CGCGGCCATGCTACTCTAC 60.662 63.158 2.24 0.00 0.00 2.59
3279 9680 2.071844 GACGCGGCCATGCTACTCTA 62.072 60.000 12.47 0.00 0.00 2.43
3280 9681 3.432051 GACGCGGCCATGCTACTCT 62.432 63.158 12.47 0.00 0.00 3.24
3281 9682 2.962253 GACGCGGCCATGCTACTC 60.962 66.667 12.47 0.00 0.00 2.59
3282 9683 3.432051 GAGACGCGGCCATGCTACT 62.432 63.158 9.25 0.78 0.00 2.57
3283 9684 2.962253 GAGACGCGGCCATGCTAC 60.962 66.667 9.25 0.00 0.00 3.58
3284 9685 3.012859 TTGAGACGCGGCCATGCTA 62.013 57.895 9.25 0.00 0.00 3.49
3285 9686 4.393155 TTGAGACGCGGCCATGCT 62.393 61.111 9.25 0.00 0.00 3.79
3286 9687 4.166011 GTTGAGACGCGGCCATGC 62.166 66.667 9.25 0.00 0.00 4.06
3287 9688 3.499737 GGTTGAGACGCGGCCATG 61.500 66.667 9.25 0.00 0.00 3.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.