Multiple sequence alignment - TraesCS7D01G121600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G121600 chr7D 100.000 3188 0 0 1 3188 75807830 75804643 0.000000e+00 5888.0
1 TraesCS7D01G121600 chr7D 89.679 2335 176 25 787 3109 75358430 75356149 0.000000e+00 2916.0
2 TraesCS7D01G121600 chr7D 79.772 1933 268 77 746 2638 75890114 75888265 0.000000e+00 1290.0
3 TraesCS7D01G121600 chr7D 90.063 473 44 1 777 1246 75400576 75400104 7.560000e-171 610.0
4 TraesCS7D01G121600 chr7D 80.717 223 35 3 230 445 75806988 75806767 1.970000e-37 167.0
5 TraesCS7D01G121600 chr7D 96.078 51 1 1 663 712 75358570 75358520 7.330000e-12 82.4
6 TraesCS7D01G121600 chr7D 96.078 51 0 2 663 712 75400698 75400649 7.330000e-12 82.4
7 TraesCS7D01G121600 chr7B 91.661 1487 103 13 777 2257 21821975 21820504 0.000000e+00 2039.0
8 TraesCS7D01G121600 chr7B 89.958 1444 114 11 1672 3109 21819665 21818247 0.000000e+00 1834.0
9 TraesCS7D01G121600 chr7B 83.032 1880 231 51 713 2555 21722137 21720309 0.000000e+00 1624.0
10 TraesCS7D01G121600 chr7B 83.514 1480 197 30 872 2334 21936314 21934865 0.000000e+00 1338.0
11 TraesCS7D01G121600 chr7B 90.439 774 66 5 742 1515 21671840 21671075 0.000000e+00 1013.0
12 TraesCS7D01G121600 chr7B 85.766 274 22 8 182 445 21936397 21936131 1.130000e-69 274.0
13 TraesCS7D01G121600 chr7B 80.702 228 36 6 225 445 21671749 21671523 1.520000e-38 171.0
14 TraesCS7D01G121600 chr7B 80.702 228 36 6 225 445 21821911 21821685 1.520000e-38 171.0
15 TraesCS7D01G121600 chr7B 97.561 41 1 0 672 712 21822085 21822045 1.590000e-08 71.3
16 TraesCS7D01G121600 chr7A 89.595 1557 143 9 707 2250 79654092 79652542 0.000000e+00 1960.0
17 TraesCS7D01G121600 chr7A 89.706 1496 142 7 758 2250 79650152 79648666 0.000000e+00 1899.0
18 TraesCS7D01G121600 chr7A 79.289 2250 319 74 871 3070 79811382 79809230 0.000000e+00 1437.0
19 TraesCS7D01G121600 chr7A 81.489 1572 197 50 752 2305 79816841 79815346 0.000000e+00 1205.0
20 TraesCS7D01G121600 chr7A 88.375 800 64 16 758 1544 79646274 79645491 0.000000e+00 935.0
21 TraesCS7D01G121600 chr7A 78.816 1081 186 30 1589 2641 79645494 79644429 0.000000e+00 688.0
22 TraesCS7D01G121600 chr7A 87.500 264 29 3 182 445 79816810 79816551 5.170000e-78 302.0
23 TraesCS7D01G121600 chr7A 91.534 189 14 1 257 445 79811383 79811197 3.150000e-65 259.0
24 TraesCS7D01G121600 chr3D 95.000 80 4 0 3109 3188 583318949 583318870 3.340000e-25 126.0
25 TraesCS7D01G121600 chr3B 92.500 80 6 0 3109 3188 633387785 633387864 7.230000e-22 115.0
26 TraesCS7D01G121600 chr2D 90.000 80 6 1 3107 3184 508068168 508068247 5.630000e-18 102.0
27 TraesCS7D01G121600 chr1D 89.286 84 5 1 3109 3188 473736879 473736962 5.630000e-18 102.0
28 TraesCS7D01G121600 chr4A 86.747 83 8 2 3108 3188 45558926 45558845 4.380000e-14 89.8
29 TraesCS7D01G121600 chr4A 86.747 83 8 2 3108 3188 511224560 511224479 4.380000e-14 89.8
30 TraesCS7D01G121600 chr2B 86.905 84 6 3 3109 3188 637362774 637362692 4.380000e-14 89.8
31 TraesCS7D01G121600 chr1A 87.500 80 7 2 3109 3186 549690386 549690464 4.380000e-14 89.8
32 TraesCS7D01G121600 chr4B 86.585 82 8 2 3109 3188 18455033 18455113 1.580000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G121600 chr7D 75804643 75807830 3187 True 3027.500 5888 90.3585 1 3188 2 chr7D.!!$R4 3187
1 TraesCS7D01G121600 chr7D 75356149 75358570 2421 True 1499.200 2916 92.8785 663 3109 2 chr7D.!!$R2 2446
2 TraesCS7D01G121600 chr7D 75888265 75890114 1849 True 1290.000 1290 79.7720 746 2638 1 chr7D.!!$R1 1892
3 TraesCS7D01G121600 chr7D 75400104 75400698 594 True 346.200 610 93.0705 663 1246 2 chr7D.!!$R3 583
4 TraesCS7D01G121600 chr7B 21720309 21722137 1828 True 1624.000 1624 83.0320 713 2555 1 chr7B.!!$R1 1842
5 TraesCS7D01G121600 chr7B 21818247 21822085 3838 True 1028.825 2039 89.9705 225 3109 4 chr7B.!!$R3 2884
6 TraesCS7D01G121600 chr7B 21934865 21936397 1532 True 806.000 1338 84.6400 182 2334 2 chr7B.!!$R4 2152
7 TraesCS7D01G121600 chr7B 21671075 21671840 765 True 592.000 1013 85.5705 225 1515 2 chr7B.!!$R2 1290
8 TraesCS7D01G121600 chr7A 79644429 79654092 9663 True 1370.500 1960 86.6230 707 2641 4 chr7A.!!$R1 1934
9 TraesCS7D01G121600 chr7A 79809230 79816841 7611 True 800.750 1437 84.9530 182 3070 4 chr7A.!!$R2 2888

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
656 667 0.031857 CGCAAATTCAGCCCAACACA 59.968 50.0 0.0 0.0 0.0 3.72 F
711 722 0.175531 AAAGCCCAACACAGCAACAC 59.824 50.0 0.0 0.0 0.0 3.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1566 14747 0.578683 TATCATCGTCGTCGTCGTCC 59.421 55.0 11.41 0.0 38.33 4.79 R
2678 17332 0.326143 AACATAAACCCCCATGCCCC 60.326 55.0 0.00 0.0 0.00 5.80 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.812690 GGGAGTGGTTAGTTAGAAAGAAAAA 57.187 36.000 0.00 0.00 0.00 1.94
48 49 6.903883 AATCCTAGTTAGTGTGTAATTGCG 57.096 37.500 0.00 0.00 0.00 4.85
49 50 5.395682 TCCTAGTTAGTGTGTAATTGCGT 57.604 39.130 0.00 0.00 0.00 5.24
50 51 5.165676 TCCTAGTTAGTGTGTAATTGCGTG 58.834 41.667 0.00 0.00 0.00 5.34
51 52 4.927425 CCTAGTTAGTGTGTAATTGCGTGT 59.073 41.667 0.00 0.00 0.00 4.49
52 53 6.072008 TCCTAGTTAGTGTGTAATTGCGTGTA 60.072 38.462 0.00 0.00 0.00 2.90
53 54 6.587226 CCTAGTTAGTGTGTAATTGCGTGTAA 59.413 38.462 0.00 0.00 0.00 2.41
54 55 6.462073 AGTTAGTGTGTAATTGCGTGTAAG 57.538 37.500 0.00 0.00 0.00 2.34
55 56 3.806316 AGTGTGTAATTGCGTGTAAGC 57.194 42.857 0.00 0.00 37.71 3.09
56 57 2.482721 AGTGTGTAATTGCGTGTAAGCC 59.517 45.455 0.00 0.00 36.02 4.35
57 58 2.482721 GTGTGTAATTGCGTGTAAGCCT 59.517 45.455 0.00 0.00 36.02 4.58
58 59 3.058501 GTGTGTAATTGCGTGTAAGCCTT 60.059 43.478 0.00 0.00 36.02 4.35
59 60 3.566322 TGTGTAATTGCGTGTAAGCCTTT 59.434 39.130 0.00 0.00 36.02 3.11
60 61 3.911964 GTGTAATTGCGTGTAAGCCTTTG 59.088 43.478 0.00 0.00 36.02 2.77
61 62 3.566322 TGTAATTGCGTGTAAGCCTTTGT 59.434 39.130 0.00 0.00 36.02 2.83
62 63 4.755629 TGTAATTGCGTGTAAGCCTTTGTA 59.244 37.500 0.00 0.00 36.02 2.41
63 64 5.413213 TGTAATTGCGTGTAAGCCTTTGTAT 59.587 36.000 0.00 0.00 36.02 2.29
64 65 3.822594 TTGCGTGTAAGCCTTTGTATG 57.177 42.857 0.00 0.00 36.02 2.39
65 66 2.773487 TGCGTGTAAGCCTTTGTATGT 58.227 42.857 0.00 0.00 36.02 2.29
66 67 3.142951 TGCGTGTAAGCCTTTGTATGTT 58.857 40.909 0.00 0.00 36.02 2.71
67 68 3.566322 TGCGTGTAAGCCTTTGTATGTTT 59.434 39.130 0.00 0.00 36.02 2.83
68 69 4.755629 TGCGTGTAAGCCTTTGTATGTTTA 59.244 37.500 0.00 0.00 36.02 2.01
69 70 5.106869 TGCGTGTAAGCCTTTGTATGTTTAG 60.107 40.000 0.00 0.00 36.02 1.85
70 71 5.106830 GCGTGTAAGCCTTTGTATGTTTAGT 60.107 40.000 0.00 0.00 0.00 2.24
71 72 6.091169 GCGTGTAAGCCTTTGTATGTTTAGTA 59.909 38.462 0.00 0.00 0.00 1.82
72 73 7.201582 GCGTGTAAGCCTTTGTATGTTTAGTAT 60.202 37.037 0.00 0.00 0.00 2.12
73 74 8.662141 CGTGTAAGCCTTTGTATGTTTAGTATT 58.338 33.333 0.00 0.00 0.00 1.89
79 80 9.408648 AGCCTTTGTATGTTTAGTATTATTGCT 57.591 29.630 0.00 0.00 0.00 3.91
87 88 8.980481 ATGTTTAGTATTATTGCTTAGCACCT 57.020 30.769 6.34 0.00 38.71 4.00
88 89 8.433421 TGTTTAGTATTATTGCTTAGCACCTC 57.567 34.615 6.34 0.00 38.71 3.85
89 90 7.223971 TGTTTAGTATTATTGCTTAGCACCTCG 59.776 37.037 6.34 0.00 38.71 4.63
90 91 4.058817 AGTATTATTGCTTAGCACCTCGC 58.941 43.478 6.34 0.00 38.71 5.03
91 92 1.663695 TTATTGCTTAGCACCTCGCC 58.336 50.000 6.34 0.00 44.04 5.54
92 93 0.179056 TATTGCTTAGCACCTCGCCC 60.179 55.000 6.34 0.00 44.04 6.13
93 94 2.893682 ATTGCTTAGCACCTCGCCCC 62.894 60.000 6.34 0.00 44.04 5.80
107 108 4.493747 CCCCGCCGTCTTCGAGTC 62.494 72.222 0.00 0.00 39.71 3.36
108 109 4.493747 CCCGCCGTCTTCGAGTCC 62.494 72.222 0.00 0.00 39.71 3.85
109 110 4.493747 CCGCCGTCTTCGAGTCCC 62.494 72.222 0.00 0.00 39.71 4.46
110 111 4.831307 CGCCGTCTTCGAGTCCCG 62.831 72.222 0.00 0.00 39.71 5.14
111 112 3.745803 GCCGTCTTCGAGTCCCGT 61.746 66.667 0.00 0.00 39.71 5.28
112 113 2.178521 CCGTCTTCGAGTCCCGTG 59.821 66.667 0.00 0.00 39.71 4.94
113 114 2.504244 CGTCTTCGAGTCCCGTGC 60.504 66.667 0.00 0.00 39.71 5.34
114 115 2.963371 GTCTTCGAGTCCCGTGCT 59.037 61.111 0.00 0.00 39.75 4.40
115 116 1.153997 GTCTTCGAGTCCCGTGCTC 60.154 63.158 0.00 0.00 39.75 4.26
116 117 2.182030 CTTCGAGTCCCGTGCTCC 59.818 66.667 0.00 0.00 39.75 4.70
117 118 3.358076 CTTCGAGTCCCGTGCTCCC 62.358 68.421 0.00 0.00 39.75 4.30
120 121 3.692406 GAGTCCCGTGCTCCCGTT 61.692 66.667 0.00 0.00 0.00 4.44
121 122 3.934391 GAGTCCCGTGCTCCCGTTG 62.934 68.421 0.00 0.00 0.00 4.10
135 136 3.786809 CGTTGGAGACGCTCTTACA 57.213 52.632 6.78 0.04 45.86 2.41
136 137 1.618861 CGTTGGAGACGCTCTTACAG 58.381 55.000 6.78 0.00 45.86 2.74
137 138 1.351153 GTTGGAGACGCTCTTACAGC 58.649 55.000 6.78 0.00 45.85 4.40
138 139 0.246635 TTGGAGACGCTCTTACAGCC 59.753 55.000 6.78 0.00 46.74 4.85
139 140 1.142097 GGAGACGCTCTTACAGCCC 59.858 63.158 6.78 0.00 46.74 5.19
140 141 1.605058 GGAGACGCTCTTACAGCCCA 61.605 60.000 6.78 0.00 46.74 5.36
141 142 0.179124 GAGACGCTCTTACAGCCCAG 60.179 60.000 0.37 0.00 46.74 4.45
142 143 0.612174 AGACGCTCTTACAGCCCAGA 60.612 55.000 0.00 0.00 46.74 3.86
143 144 0.461961 GACGCTCTTACAGCCCAGAT 59.538 55.000 0.00 0.00 46.74 2.90
144 145 1.681793 GACGCTCTTACAGCCCAGATA 59.318 52.381 0.00 0.00 46.74 1.98
145 146 2.100916 GACGCTCTTACAGCCCAGATAA 59.899 50.000 0.00 0.00 46.74 1.75
146 147 2.500098 ACGCTCTTACAGCCCAGATAAA 59.500 45.455 0.00 0.00 46.74 1.40
147 148 3.055385 ACGCTCTTACAGCCCAGATAAAA 60.055 43.478 0.00 0.00 46.74 1.52
148 149 3.557595 CGCTCTTACAGCCCAGATAAAAG 59.442 47.826 0.00 0.00 46.74 2.27
149 150 3.313803 GCTCTTACAGCCCAGATAAAAGC 59.686 47.826 0.00 0.00 43.17 3.51
150 151 3.879892 CTCTTACAGCCCAGATAAAAGCC 59.120 47.826 0.00 0.00 0.00 4.35
151 152 3.265737 TCTTACAGCCCAGATAAAAGCCA 59.734 43.478 0.00 0.00 0.00 4.75
152 153 2.603075 ACAGCCCAGATAAAAGCCAA 57.397 45.000 0.00 0.00 0.00 4.52
153 154 2.171003 ACAGCCCAGATAAAAGCCAAC 58.829 47.619 0.00 0.00 0.00 3.77
154 155 2.170166 CAGCCCAGATAAAAGCCAACA 58.830 47.619 0.00 0.00 0.00 3.33
155 156 2.094545 CAGCCCAGATAAAAGCCAACAC 60.095 50.000 0.00 0.00 0.00 3.32
156 157 1.892474 GCCCAGATAAAAGCCAACACA 59.108 47.619 0.00 0.00 0.00 3.72
157 158 2.497273 GCCCAGATAAAAGCCAACACAT 59.503 45.455 0.00 0.00 0.00 3.21
158 159 3.429410 GCCCAGATAAAAGCCAACACATC 60.429 47.826 0.00 0.00 0.00 3.06
159 160 3.181497 CCCAGATAAAAGCCAACACATCG 60.181 47.826 0.00 0.00 0.00 3.84
160 161 3.429085 CAGATAAAAGCCAACACATCGC 58.571 45.455 0.00 0.00 0.00 4.58
161 162 2.095853 AGATAAAAGCCAACACATCGCG 59.904 45.455 0.00 0.00 0.00 5.87
162 163 0.109964 TAAAAGCCAACACATCGCGC 60.110 50.000 0.00 0.00 0.00 6.86
163 164 2.747507 AAAAGCCAACACATCGCGCC 62.748 55.000 0.00 0.00 0.00 6.53
209 210 2.280524 CCGTCGTGCACCCAGAAA 60.281 61.111 12.15 0.00 0.00 2.52
211 212 2.604174 CGTCGTGCACCCAGAAACC 61.604 63.158 12.15 0.00 0.00 3.27
212 213 1.227853 GTCGTGCACCCAGAAACCT 60.228 57.895 12.15 0.00 0.00 3.50
213 214 1.070786 TCGTGCACCCAGAAACCTC 59.929 57.895 12.15 0.00 0.00 3.85
216 217 3.056328 GCACCCAGAAACCTCGCC 61.056 66.667 0.00 0.00 0.00 5.54
218 219 4.016706 ACCCAGAAACCTCGCCGG 62.017 66.667 0.00 0.00 39.35 6.13
239 240 3.827898 GGACGGACTCCCTCGCAG 61.828 72.222 0.00 0.00 31.83 5.18
241 242 2.600769 ACGGACTCCCTCGCAGTT 60.601 61.111 0.00 0.00 0.00 3.16
268 279 1.226603 CTCTGCTGGTACGTACGCC 60.227 63.158 16.72 10.21 0.00 5.68
299 310 4.883759 TGTAGATTCATCTCTTCCTCCCA 58.116 43.478 0.00 0.00 38.32 4.37
300 311 4.898265 TGTAGATTCATCTCTTCCTCCCAG 59.102 45.833 0.00 0.00 38.32 4.45
301 312 2.705127 AGATTCATCTCTTCCTCCCAGC 59.295 50.000 0.00 0.00 29.30 4.85
302 313 2.260639 TTCATCTCTTCCTCCCAGCT 57.739 50.000 0.00 0.00 0.00 4.24
303 314 1.493861 TCATCTCTTCCTCCCAGCTG 58.506 55.000 6.78 6.78 0.00 4.24
312 323 3.382803 CTCCCAGCTGCTTCCCTCG 62.383 68.421 8.66 0.00 0.00 4.63
317 328 4.537433 GCTGCTTCCCTCGCCGAT 62.537 66.667 0.00 0.00 0.00 4.18
341 352 2.045524 GATGCAATCTCTCCTCCTCCA 58.954 52.381 0.00 0.00 41.17 3.86
346 357 0.933791 ATCTCTCCTCCTCCACCCCT 60.934 60.000 0.00 0.00 0.00 4.79
375 386 2.465010 TTTACCGCCTCCTCTCCCCA 62.465 60.000 0.00 0.00 0.00 4.96
404 415 2.746277 GACGGCGCCAAGGACATT 60.746 61.111 28.98 0.00 0.00 2.71
442 453 3.298958 GGACAGCCTCACCGATGA 58.701 61.111 0.00 0.00 0.00 2.92
443 454 1.153549 GGACAGCCTCACCGATGAC 60.154 63.158 0.00 0.00 0.00 3.06
444 455 1.153549 GACAGCCTCACCGATGACC 60.154 63.158 0.00 0.00 0.00 4.02
445 456 1.888436 GACAGCCTCACCGATGACCA 61.888 60.000 0.00 0.00 0.00 4.02
446 457 1.267574 ACAGCCTCACCGATGACCAT 61.268 55.000 0.00 0.00 0.00 3.55
447 458 0.107508 CAGCCTCACCGATGACCATT 60.108 55.000 0.00 0.00 0.00 3.16
448 459 0.107508 AGCCTCACCGATGACCATTG 60.108 55.000 0.00 0.00 0.00 2.82
449 460 1.097547 GCCTCACCGATGACCATTGG 61.098 60.000 13.42 13.42 45.92 3.16
454 465 2.872408 CCGATGACCATTGGTTGCT 58.128 52.632 10.29 0.00 37.54 3.91
455 466 2.036958 CCGATGACCATTGGTTGCTA 57.963 50.000 10.29 0.00 37.54 3.49
456 467 1.670811 CCGATGACCATTGGTTGCTAC 59.329 52.381 10.29 0.00 37.54 3.58
457 468 2.632377 CGATGACCATTGGTTGCTACT 58.368 47.619 10.29 0.00 35.25 2.57
458 469 2.352651 CGATGACCATTGGTTGCTACTG 59.647 50.000 10.29 0.00 35.25 2.74
459 470 1.533625 TGACCATTGGTTGCTACTGC 58.466 50.000 10.29 0.00 35.25 4.40
468 479 2.656646 TGCTACTGCACCGTCCAG 59.343 61.111 0.00 0.00 45.31 3.86
469 480 2.942796 TGCTACTGCACCGTCCAGG 61.943 63.158 0.00 0.00 45.31 4.45
481 492 3.282831 CCGTCCAGGTTGAATTTTGAC 57.717 47.619 0.00 0.00 34.51 3.18
482 493 2.350388 CCGTCCAGGTTGAATTTTGACG 60.350 50.000 0.00 0.00 34.51 4.35
483 494 2.546368 CGTCCAGGTTGAATTTTGACGA 59.454 45.455 0.00 0.00 35.85 4.20
484 495 3.002862 CGTCCAGGTTGAATTTTGACGAA 59.997 43.478 0.00 0.00 35.85 3.85
485 496 4.320202 CGTCCAGGTTGAATTTTGACGAAT 60.320 41.667 0.00 0.00 35.85 3.34
486 497 5.528870 GTCCAGGTTGAATTTTGACGAATT 58.471 37.500 0.00 0.00 32.16 2.17
487 498 5.983118 GTCCAGGTTGAATTTTGACGAATTT 59.017 36.000 0.00 0.00 29.75 1.82
488 499 6.143919 GTCCAGGTTGAATTTTGACGAATTTC 59.856 38.462 0.00 3.92 29.75 2.17
489 500 5.405269 CCAGGTTGAATTTTGACGAATTTCC 59.595 40.000 0.00 3.44 30.28 3.13
490 501 5.405269 CAGGTTGAATTTTGACGAATTTCCC 59.595 40.000 0.00 3.71 30.28 3.97
491 502 4.688879 GGTTGAATTTTGACGAATTTCCCC 59.311 41.667 0.00 4.74 30.28 4.81
492 503 4.529109 TGAATTTTGACGAATTTCCCCC 57.471 40.909 0.00 0.00 30.28 5.40
532 543 9.598517 TTTTGATGAATTTGCTTTAGAACAACT 57.401 25.926 0.00 0.00 0.00 3.16
543 554 5.432885 TTTAGAACAACTAAAGTGCAGGC 57.567 39.130 0.00 0.00 43.45 4.85
544 555 3.214696 AGAACAACTAAAGTGCAGGCT 57.785 42.857 0.00 0.00 0.00 4.58
545 556 3.555966 AGAACAACTAAAGTGCAGGCTT 58.444 40.909 0.00 0.00 0.00 4.35
546 557 4.714632 AGAACAACTAAAGTGCAGGCTTA 58.285 39.130 0.00 0.00 0.00 3.09
547 558 4.757149 AGAACAACTAAAGTGCAGGCTTAG 59.243 41.667 7.51 7.51 0.00 2.18
548 559 4.351874 ACAACTAAAGTGCAGGCTTAGA 57.648 40.909 13.60 0.00 0.00 2.10
549 560 4.319177 ACAACTAAAGTGCAGGCTTAGAG 58.681 43.478 13.60 6.80 0.00 2.43
550 561 2.979240 ACTAAAGTGCAGGCTTAGAGC 58.021 47.619 13.60 0.00 41.46 4.09
551 562 2.303022 ACTAAAGTGCAGGCTTAGAGCA 59.697 45.455 13.60 0.00 44.75 4.26
552 563 2.503895 AAAGTGCAGGCTTAGAGCAT 57.496 45.000 0.29 0.00 44.75 3.79
553 564 2.035530 AAGTGCAGGCTTAGAGCATC 57.964 50.000 0.29 0.00 44.75 3.91
567 578 3.296322 GAGCATCTCTAACAGATCCCG 57.704 52.381 0.00 0.00 40.20 5.14
568 579 1.342819 AGCATCTCTAACAGATCCCGC 59.657 52.381 0.00 0.00 40.20 6.13
569 580 1.069204 GCATCTCTAACAGATCCCGCA 59.931 52.381 0.00 0.00 40.20 5.69
570 581 2.483714 GCATCTCTAACAGATCCCGCAA 60.484 50.000 0.00 0.00 40.20 4.85
571 582 3.797039 CATCTCTAACAGATCCCGCAAA 58.203 45.455 0.00 0.00 40.20 3.68
572 583 3.247006 TCTCTAACAGATCCCGCAAAC 57.753 47.619 0.00 0.00 0.00 2.93
573 584 2.093658 TCTCTAACAGATCCCGCAAACC 60.094 50.000 0.00 0.00 0.00 3.27
574 585 1.006832 CTAACAGATCCCGCAAACCG 58.993 55.000 0.00 0.00 0.00 4.44
575 586 0.322322 TAACAGATCCCGCAAACCGT 59.678 50.000 0.00 0.00 34.38 4.83
576 587 1.234615 AACAGATCCCGCAAACCGTG 61.235 55.000 0.00 0.00 34.38 4.94
601 612 3.157922 GGCAAAAACCGTCTGTTCG 57.842 52.632 0.00 0.00 35.67 3.95
602 613 0.933047 GGCAAAAACCGTCTGTTCGC 60.933 55.000 0.00 0.00 35.67 4.70
603 614 1.259544 GCAAAAACCGTCTGTTCGCG 61.260 55.000 0.00 0.00 35.67 5.87
624 635 3.493440 CGGAGGCCGTTTTACCGC 61.493 66.667 0.00 0.00 42.73 5.68
625 636 3.129502 GGAGGCCGTTTTACCGCC 61.130 66.667 0.00 1.62 38.81 6.13
626 637 3.129502 GAGGCCGTTTTACCGCCC 61.130 66.667 0.00 0.00 0.00 6.13
629 640 3.049074 GCCGTTTTACCGCCCGAA 61.049 61.111 0.00 0.00 0.00 4.30
630 641 2.400962 GCCGTTTTACCGCCCGAAT 61.401 57.895 0.00 0.00 0.00 3.34
631 642 1.088910 GCCGTTTTACCGCCCGAATA 61.089 55.000 0.00 0.00 0.00 1.75
632 643 1.367659 CCGTTTTACCGCCCGAATAA 58.632 50.000 0.00 0.00 0.00 1.40
633 644 1.736681 CCGTTTTACCGCCCGAATAAA 59.263 47.619 0.00 0.00 0.00 1.40
634 645 2.355444 CCGTTTTACCGCCCGAATAAAT 59.645 45.455 0.00 0.00 0.00 1.40
635 646 3.546616 CCGTTTTACCGCCCGAATAAATC 60.547 47.826 0.00 0.00 0.00 2.17
636 647 3.546616 CGTTTTACCGCCCGAATAAATCC 60.547 47.826 0.00 0.00 0.00 3.01
637 648 2.259266 TTACCGCCCGAATAAATCCC 57.741 50.000 0.00 0.00 0.00 3.85
638 649 0.033781 TACCGCCCGAATAAATCCCG 59.966 55.000 0.00 0.00 0.00 5.14
639 650 2.613506 CCGCCCGAATAAATCCCGC 61.614 63.158 0.00 0.00 0.00 6.13
640 651 1.890041 CGCCCGAATAAATCCCGCA 60.890 57.895 0.00 0.00 0.00 5.69
641 652 1.440938 CGCCCGAATAAATCCCGCAA 61.441 55.000 0.00 0.00 0.00 4.85
642 653 0.741915 GCCCGAATAAATCCCGCAAA 59.258 50.000 0.00 0.00 0.00 3.68
643 654 1.339929 GCCCGAATAAATCCCGCAAAT 59.660 47.619 0.00 0.00 0.00 2.32
644 655 2.223947 GCCCGAATAAATCCCGCAAATT 60.224 45.455 0.00 0.00 0.00 1.82
645 656 3.638484 CCCGAATAAATCCCGCAAATTC 58.362 45.455 0.00 0.00 0.00 2.17
646 657 3.067461 CCCGAATAAATCCCGCAAATTCA 59.933 43.478 0.00 0.00 0.00 2.57
647 658 4.290155 CCGAATAAATCCCGCAAATTCAG 58.710 43.478 0.00 0.00 0.00 3.02
648 659 3.730715 CGAATAAATCCCGCAAATTCAGC 59.269 43.478 0.00 0.00 0.00 4.26
649 660 3.733443 ATAAATCCCGCAAATTCAGCC 57.267 42.857 0.00 0.00 0.00 4.85
650 661 0.536724 AAATCCCGCAAATTCAGCCC 59.463 50.000 0.00 0.00 0.00 5.19
651 662 0.614415 AATCCCGCAAATTCAGCCCA 60.614 50.000 0.00 0.00 0.00 5.36
652 663 0.614415 ATCCCGCAAATTCAGCCCAA 60.614 50.000 0.00 0.00 0.00 4.12
653 664 1.079888 CCCGCAAATTCAGCCCAAC 60.080 57.895 0.00 0.00 0.00 3.77
654 665 1.664873 CCGCAAATTCAGCCCAACA 59.335 52.632 0.00 0.00 0.00 3.33
655 666 0.667184 CCGCAAATTCAGCCCAACAC 60.667 55.000 0.00 0.00 0.00 3.32
656 667 0.031857 CGCAAATTCAGCCCAACACA 59.968 50.000 0.00 0.00 0.00 3.72
657 668 1.787012 GCAAATTCAGCCCAACACAG 58.213 50.000 0.00 0.00 0.00 3.66
658 669 1.787012 CAAATTCAGCCCAACACAGC 58.213 50.000 0.00 0.00 0.00 4.40
659 670 1.068895 CAAATTCAGCCCAACACAGCA 59.931 47.619 0.00 0.00 0.00 4.41
660 671 1.412079 AATTCAGCCCAACACAGCAA 58.588 45.000 0.00 0.00 0.00 3.91
661 672 0.675633 ATTCAGCCCAACACAGCAAC 59.324 50.000 0.00 0.00 0.00 4.17
662 673 0.682532 TTCAGCCCAACACAGCAACA 60.683 50.000 0.00 0.00 0.00 3.33
663 674 1.066257 CAGCCCAACACAGCAACAC 59.934 57.895 0.00 0.00 0.00 3.32
664 675 2.026014 GCCCAACACAGCAACACG 59.974 61.111 0.00 0.00 0.00 4.49
665 676 2.721231 CCCAACACAGCAACACGG 59.279 61.111 0.00 0.00 0.00 4.94
666 677 2.026014 CCAACACAGCAACACGGC 59.974 61.111 0.00 0.00 0.00 5.68
692 703 2.878406 GTGCAGGCTGAAAACTAGACAA 59.122 45.455 20.86 0.00 0.00 3.18
693 704 3.315191 GTGCAGGCTGAAAACTAGACAAA 59.685 43.478 20.86 0.00 0.00 2.83
694 705 3.951037 TGCAGGCTGAAAACTAGACAAAA 59.049 39.130 20.86 0.00 0.00 2.44
695 706 4.036734 TGCAGGCTGAAAACTAGACAAAAG 59.963 41.667 20.86 0.00 0.00 2.27
696 707 4.540824 CAGGCTGAAAACTAGACAAAAGC 58.459 43.478 9.42 0.00 0.00 3.51
697 708 3.902150 GGCTGAAAACTAGACAAAAGCC 58.098 45.455 12.42 12.42 41.91 4.35
698 709 3.305403 GGCTGAAAACTAGACAAAAGCCC 60.305 47.826 15.24 3.34 42.52 5.19
699 710 3.317993 GCTGAAAACTAGACAAAAGCCCA 59.682 43.478 0.00 0.00 0.00 5.36
700 711 4.202111 GCTGAAAACTAGACAAAAGCCCAA 60.202 41.667 0.00 0.00 0.00 4.12
701 712 5.257082 TGAAAACTAGACAAAAGCCCAAC 57.743 39.130 0.00 0.00 0.00 3.77
702 713 4.707448 TGAAAACTAGACAAAAGCCCAACA 59.293 37.500 0.00 0.00 0.00 3.33
703 714 4.649088 AAACTAGACAAAAGCCCAACAC 57.351 40.909 0.00 0.00 0.00 3.32
704 715 3.290948 ACTAGACAAAAGCCCAACACA 57.709 42.857 0.00 0.00 0.00 3.72
705 716 3.214328 ACTAGACAAAAGCCCAACACAG 58.786 45.455 0.00 0.00 0.00 3.66
706 717 0.746659 AGACAAAAGCCCAACACAGC 59.253 50.000 0.00 0.00 0.00 4.40
707 718 0.459489 GACAAAAGCCCAACACAGCA 59.541 50.000 0.00 0.00 0.00 4.41
708 719 0.901124 ACAAAAGCCCAACACAGCAA 59.099 45.000 0.00 0.00 0.00 3.91
709 720 1.289276 CAAAAGCCCAACACAGCAAC 58.711 50.000 0.00 0.00 0.00 4.17
710 721 0.901124 AAAAGCCCAACACAGCAACA 59.099 45.000 0.00 0.00 0.00 3.33
711 722 0.175531 AAAGCCCAACACAGCAACAC 59.824 50.000 0.00 0.00 0.00 3.32
721 732 1.122227 ACAGCAACACAAAGCCCAAT 58.878 45.000 0.00 0.00 0.00 3.16
725 736 2.899256 AGCAACACAAAGCCCAATACAT 59.101 40.909 0.00 0.00 0.00 2.29
729 740 5.295950 CAACACAAAGCCCAATACATCAAA 58.704 37.500 0.00 0.00 0.00 2.69
750 761 2.457598 ACTCCTCATTCACTTCGCCTA 58.542 47.619 0.00 0.00 0.00 3.93
836 891 3.775654 GGGACGGGAGCACCTCAG 61.776 72.222 0.00 0.00 36.97 3.35
838 893 2.060980 GGACGGGAGCACCTCAGAT 61.061 63.158 0.00 0.00 36.97 2.90
839 894 0.755698 GGACGGGAGCACCTCAGATA 60.756 60.000 0.00 0.00 36.97 1.98
891 946 1.135315 GTACGTACGCCACATTCTCCA 60.135 52.381 16.72 0.00 0.00 3.86
964 1026 3.801068 ATCTCTCCTCCTCCGCCCG 62.801 68.421 0.00 0.00 0.00 6.13
1209 5147 1.338136 ATGACCTCGCCGGATTCCTT 61.338 55.000 5.05 0.00 36.31 3.36
1226 5164 3.672255 TTTACTCGAGCCGCGACCG 62.672 63.158 13.61 8.15 45.59 4.79
1242 5180 2.049248 CGCAGCGTTGGCCATTTT 60.049 55.556 6.09 0.00 41.24 1.82
1246 5184 1.940752 GCAGCGTTGGCCATTTTTCAT 60.941 47.619 6.09 0.00 41.24 2.57
1247 5185 2.415776 CAGCGTTGGCCATTTTTCATT 58.584 42.857 6.09 0.00 41.24 2.57
1248 5186 3.583806 CAGCGTTGGCCATTTTTCATTA 58.416 40.909 6.09 0.00 41.24 1.90
1249 5187 3.367630 CAGCGTTGGCCATTTTTCATTAC 59.632 43.478 6.09 0.00 41.24 1.89
1492 9314 2.657237 CTCGCTTGGGGTTCGACT 59.343 61.111 0.00 0.00 0.00 4.18
1528 9350 3.213506 CACTTCCATGTGTTCCAGTTCA 58.786 45.455 0.00 0.00 33.61 3.18
1572 14753 3.444703 AATGCAGATACAGAGGACGAC 57.555 47.619 0.00 0.00 0.00 4.34
1575 14756 1.268133 GCAGATACAGAGGACGACGAC 60.268 57.143 0.00 0.00 0.00 4.34
1582 14763 1.296722 GAGGACGACGACGACGATG 60.297 63.158 25.15 8.06 42.66 3.84
1583 14764 1.690283 GAGGACGACGACGACGATGA 61.690 60.000 25.15 0.00 42.66 2.92
1584 14765 1.088340 AGGACGACGACGACGATGAT 61.088 55.000 25.15 3.47 42.66 2.45
1665 14846 1.830847 GGACAACGGTTGGGGCTTT 60.831 57.895 23.51 2.53 34.12 3.51
1680 14864 2.488952 GGCTTTGCTAGGATAGTGAGC 58.511 52.381 3.81 0.81 41.93 4.26
1725 14909 1.336240 GGTTTTCTGCATTTGCTCGCT 60.336 47.619 3.94 0.00 42.66 4.93
1803 14994 1.332889 TGCCAGACGATGAGGATGCT 61.333 55.000 0.00 0.00 0.00 3.79
1805 14996 1.039068 CCAGACGATGAGGATGCTCT 58.961 55.000 15.82 0.84 0.00 4.09
1837 15028 6.603201 AGATGTTGATTACGGGTTCATTGATT 59.397 34.615 0.00 0.00 0.00 2.57
1918 15109 1.353358 TCTGGGTTCTCGAGGACTACA 59.647 52.381 22.99 19.56 0.00 2.74
1919 15110 1.473278 CTGGGTTCTCGAGGACTACAC 59.527 57.143 22.99 12.40 0.00 2.90
1945 15136 1.961277 GTGTGGGTCTTGGAGCACG 60.961 63.158 0.00 0.00 0.00 5.34
1952 15143 0.531974 GTCTTGGAGCACGGTGTCAA 60.532 55.000 10.24 10.78 0.00 3.18
2052 15243 6.399639 AACACGATTTTCTTGGTTTATGGT 57.600 33.333 0.00 0.00 0.00 3.55
2128 16738 2.874701 CACGATCTTGGACATGATTCCC 59.125 50.000 0.00 0.00 34.33 3.97
2136 16746 0.842635 GACATGATTCCCTGGAGCCT 59.157 55.000 0.00 0.00 0.00 4.58
2213 16823 3.054875 TCTGGCTTGCATATCACTGTTCT 60.055 43.478 0.00 0.00 0.00 3.01
2217 16827 5.528690 TGGCTTGCATATCACTGTTCTATTC 59.471 40.000 0.00 0.00 0.00 1.75
2258 16878 5.123936 GGTGAATCATAGGTCCCAAGTAAC 58.876 45.833 0.00 0.00 0.00 2.50
2267 16887 2.027192 GGTCCCAAGTAACATCAGCAGA 60.027 50.000 0.00 0.00 0.00 4.26
2309 16929 3.106242 TGTTGCGTTGCTTCTCTTCTA 57.894 42.857 0.00 0.00 0.00 2.10
2334 16954 3.057033 GCCGAGTGTACTCTTTAACCTCA 60.057 47.826 10.05 0.00 40.75 3.86
2350 16970 9.474920 CTTTAACCTCATTTTTGCACTTTATGA 57.525 29.630 0.00 0.00 0.00 2.15
2373 16993 8.335532 TGAGGTTATCTGTTCCAGTTAATTTG 57.664 34.615 0.00 0.00 31.28 2.32
2382 17025 7.558444 TCTGTTCCAGTTAATTTGGTAACACTT 59.442 33.333 15.07 0.00 38.56 3.16
2394 17040 5.216614 TGGTAACACTTGCTATGTGTACA 57.783 39.130 9.56 0.00 46.46 2.90
2488 17142 8.578448 TCATGATGTTTGTGATTTCCAGATTA 57.422 30.769 0.00 0.00 0.00 1.75
2591 17245 8.388103 GCATTCAAACTATGTAATCTTACGTGT 58.612 33.333 0.00 0.35 36.45 4.49
2678 17332 5.183713 ACCATTGACATACTGGTGAACAATG 59.816 40.000 0.00 0.00 41.65 2.82
2688 17342 1.305971 TGAACAATGGGGCATGGGG 60.306 57.895 0.00 0.00 0.00 4.96
2709 17363 3.832490 GGGTTTATGTTCCTTTGCTCCTT 59.168 43.478 0.00 0.00 0.00 3.36
2711 17365 5.221641 GGGTTTATGTTCCTTTGCTCCTTTT 60.222 40.000 0.00 0.00 0.00 2.27
2743 17400 1.538047 TCCTTTGCTCCTGTCAATGC 58.462 50.000 0.00 0.00 0.00 3.56
2814 17471 8.807667 ATGTTTTCTGAAGTTTAAAGCATCAG 57.192 30.769 14.36 14.36 39.04 2.90
2878 17543 3.133003 CCCTCCGTGTCATATTCAGTTCT 59.867 47.826 0.00 0.00 0.00 3.01
2971 17637 4.215399 GCTGTACTTGGTTGCAATGTCTTA 59.785 41.667 0.59 0.00 0.00 2.10
2976 17642 6.655078 ACTTGGTTGCAATGTCTTATCTTT 57.345 33.333 0.59 0.00 0.00 2.52
2980 17646 4.321899 GGTTGCAATGTCTTATCTTTGCCA 60.322 41.667 0.59 2.37 43.23 4.92
3008 17681 6.033513 GGATGCTTTTAACTGTCGTTTAATGC 59.966 38.462 7.44 7.44 40.35 3.56
3020 17693 4.068599 TCGTTTAATGCAACACAGGATGA 58.931 39.130 0.00 0.00 39.69 2.92
3028 17701 3.774766 TGCAACACAGGATGATAGGTACT 59.225 43.478 0.00 0.00 39.69 2.73
3029 17702 4.122776 GCAACACAGGATGATAGGTACTG 58.877 47.826 0.00 0.00 37.64 2.74
3061 17734 5.334957 CGGATGCGTCTACAGTATATTCAGT 60.335 44.000 5.77 0.00 0.00 3.41
3064 17737 7.751348 GGATGCGTCTACAGTATATTCAGTTAG 59.249 40.741 5.77 0.00 0.00 2.34
3085 17760 8.804204 AGTTAGTTTATCGGGATAATGAGTAGG 58.196 37.037 2.21 0.00 33.71 3.18
3109 17784 3.748568 CACTCTGAACTTTTAGCCTCCAC 59.251 47.826 0.00 0.00 0.00 4.02
3110 17785 3.648545 ACTCTGAACTTTTAGCCTCCACT 59.351 43.478 0.00 0.00 0.00 4.00
3111 17786 4.838986 ACTCTGAACTTTTAGCCTCCACTA 59.161 41.667 0.00 0.00 0.00 2.74
3112 17787 5.046950 ACTCTGAACTTTTAGCCTCCACTAG 60.047 44.000 0.00 0.00 0.00 2.57
3113 17788 4.838986 TCTGAACTTTTAGCCTCCACTAGT 59.161 41.667 0.00 0.00 0.00 2.57
3114 17789 6.014647 TCTGAACTTTTAGCCTCCACTAGTA 58.985 40.000 0.00 0.00 0.00 1.82
3115 17790 6.495872 TCTGAACTTTTAGCCTCCACTAGTAA 59.504 38.462 0.00 0.00 0.00 2.24
3116 17791 7.015877 TCTGAACTTTTAGCCTCCACTAGTAAA 59.984 37.037 0.00 0.00 0.00 2.01
3117 17792 7.511268 TGAACTTTTAGCCTCCACTAGTAAAA 58.489 34.615 0.00 0.00 0.00 1.52
3118 17793 7.443272 TGAACTTTTAGCCTCCACTAGTAAAAC 59.557 37.037 0.00 0.00 0.00 2.43
3119 17794 5.930569 ACTTTTAGCCTCCACTAGTAAAACG 59.069 40.000 0.00 0.00 0.00 3.60
3120 17795 2.381725 AGCCTCCACTAGTAAAACGC 57.618 50.000 0.00 0.00 0.00 4.84
3121 17796 1.066358 AGCCTCCACTAGTAAAACGCC 60.066 52.381 0.00 0.00 0.00 5.68
3122 17797 2.010544 GCCTCCACTAGTAAAACGCCC 61.011 57.143 0.00 0.00 0.00 6.13
3123 17798 1.636988 CTCCACTAGTAAAACGCCCG 58.363 55.000 0.00 0.00 0.00 6.13
3124 17799 0.968405 TCCACTAGTAAAACGCCCGT 59.032 50.000 0.00 0.00 0.00 5.28
3125 17800 1.073177 CCACTAGTAAAACGCCCGTG 58.927 55.000 0.00 0.00 0.00 4.94
3126 17801 0.441145 CACTAGTAAAACGCCCGTGC 59.559 55.000 0.00 0.00 0.00 5.34
3147 17822 3.904571 CGTTGCTACGGGCTATAATACA 58.095 45.455 13.04 0.00 43.94 2.29
3148 17823 4.491676 CGTTGCTACGGGCTATAATACAT 58.508 43.478 13.04 0.00 43.94 2.29
3149 17824 5.643664 CGTTGCTACGGGCTATAATACATA 58.356 41.667 13.04 0.00 43.94 2.29
3150 17825 6.270815 CGTTGCTACGGGCTATAATACATAT 58.729 40.000 13.04 0.00 43.94 1.78
3151 17826 6.198403 CGTTGCTACGGGCTATAATACATATG 59.802 42.308 13.04 0.00 43.94 1.78
3152 17827 7.262772 GTTGCTACGGGCTATAATACATATGA 58.737 38.462 10.38 0.00 42.39 2.15
3153 17828 7.412853 TGCTACGGGCTATAATACATATGAA 57.587 36.000 10.38 0.00 42.39 2.57
3154 17829 8.018537 TGCTACGGGCTATAATACATATGAAT 57.981 34.615 10.38 0.25 42.39 2.57
3155 17830 8.141909 TGCTACGGGCTATAATACATATGAATC 58.858 37.037 10.38 0.00 42.39 2.52
3156 17831 8.141909 GCTACGGGCTATAATACATATGAATCA 58.858 37.037 10.38 0.00 38.06 2.57
3159 17834 9.162764 ACGGGCTATAATACATATGAATCAAAC 57.837 33.333 10.38 0.00 0.00 2.93
3160 17835 9.161629 CGGGCTATAATACATATGAATCAAACA 57.838 33.333 10.38 0.00 0.00 2.83
3171 17846 9.347240 ACATATGAATCAAACAGAGGATTAAGG 57.653 33.333 10.38 0.00 34.06 2.69
3172 17847 9.347240 CATATGAATCAAACAGAGGATTAAGGT 57.653 33.333 0.00 0.00 34.06 3.50
3173 17848 7.872113 ATGAATCAAACAGAGGATTAAGGTC 57.128 36.000 0.00 0.00 34.06 3.85
3174 17849 5.874810 TGAATCAAACAGAGGATTAAGGTCG 59.125 40.000 0.00 0.00 34.06 4.79
3175 17850 4.884668 TCAAACAGAGGATTAAGGTCGT 57.115 40.909 0.00 0.00 0.00 4.34
3176 17851 4.817517 TCAAACAGAGGATTAAGGTCGTC 58.182 43.478 0.00 0.00 34.18 4.20
3177 17852 4.527038 TCAAACAGAGGATTAAGGTCGTCT 59.473 41.667 0.00 0.00 42.33 4.18
3178 17853 5.011738 TCAAACAGAGGATTAAGGTCGTCTT 59.988 40.000 0.00 0.27 40.32 3.01
3179 17854 4.722361 ACAGAGGATTAAGGTCGTCTTC 57.278 45.455 0.00 0.00 40.32 2.87
3180 17855 4.087182 ACAGAGGATTAAGGTCGTCTTCA 58.913 43.478 0.00 0.00 40.32 3.02
3181 17856 4.527038 ACAGAGGATTAAGGTCGTCTTCAA 59.473 41.667 0.00 0.00 40.32 2.69
3182 17857 5.105752 CAGAGGATTAAGGTCGTCTTCAAG 58.894 45.833 0.00 0.00 40.32 3.02
3183 17858 4.160626 AGAGGATTAAGGTCGTCTTCAAGG 59.839 45.833 0.00 0.00 39.57 3.61
3184 17859 3.838903 AGGATTAAGGTCGTCTTCAAGGT 59.161 43.478 0.00 0.00 36.93 3.50
3185 17860 4.081586 AGGATTAAGGTCGTCTTCAAGGTC 60.082 45.833 0.00 0.00 36.93 3.85
3186 17861 3.293311 TTAAGGTCGTCTTCAAGGTCG 57.707 47.619 0.00 0.00 36.93 4.79
3187 17862 1.325355 AAGGTCGTCTTCAAGGTCGA 58.675 50.000 2.38 2.38 0.00 4.20
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 8.234546 CGCAATTACACACTAACTAGGATTTTT 58.765 33.333 0.00 0.00 0.00 1.94
23 24 7.389607 ACGCAATTACACACTAACTAGGATTTT 59.610 33.333 0.00 0.00 0.00 1.82
24 25 6.877322 ACGCAATTACACACTAACTAGGATTT 59.123 34.615 0.00 0.00 0.00 2.17
25 26 6.312918 CACGCAATTACACACTAACTAGGATT 59.687 38.462 0.00 0.00 0.00 3.01
26 27 5.810587 CACGCAATTACACACTAACTAGGAT 59.189 40.000 0.00 0.00 0.00 3.24
27 28 5.165676 CACGCAATTACACACTAACTAGGA 58.834 41.667 0.00 0.00 0.00 2.94
28 29 4.927425 ACACGCAATTACACACTAACTAGG 59.073 41.667 0.00 0.00 0.00 3.02
29 30 7.571089 TTACACGCAATTACACACTAACTAG 57.429 36.000 0.00 0.00 0.00 2.57
30 31 6.089820 GCTTACACGCAATTACACACTAACTA 59.910 38.462 0.00 0.00 0.00 2.24
31 32 5.107220 GCTTACACGCAATTACACACTAACT 60.107 40.000 0.00 0.00 0.00 2.24
32 33 5.077424 GCTTACACGCAATTACACACTAAC 58.923 41.667 0.00 0.00 0.00 2.34
33 34 4.152759 GGCTTACACGCAATTACACACTAA 59.847 41.667 0.00 0.00 0.00 2.24
34 35 3.680937 GGCTTACACGCAATTACACACTA 59.319 43.478 0.00 0.00 0.00 2.74
35 36 2.482721 GGCTTACACGCAATTACACACT 59.517 45.455 0.00 0.00 0.00 3.55
36 37 2.482721 AGGCTTACACGCAATTACACAC 59.517 45.455 0.00 0.00 0.00 3.82
37 38 2.773487 AGGCTTACACGCAATTACACA 58.227 42.857 0.00 0.00 0.00 3.72
38 39 3.824414 AAGGCTTACACGCAATTACAC 57.176 42.857 0.00 0.00 0.00 2.90
39 40 3.566322 ACAAAGGCTTACACGCAATTACA 59.434 39.130 0.00 0.00 0.00 2.41
40 41 4.155310 ACAAAGGCTTACACGCAATTAC 57.845 40.909 0.00 0.00 0.00 1.89
41 42 5.413213 ACATACAAAGGCTTACACGCAATTA 59.587 36.000 0.00 0.00 0.00 1.40
42 43 4.217550 ACATACAAAGGCTTACACGCAATT 59.782 37.500 0.00 0.00 0.00 2.32
43 44 3.756434 ACATACAAAGGCTTACACGCAAT 59.244 39.130 0.00 0.00 0.00 3.56
44 45 3.142951 ACATACAAAGGCTTACACGCAA 58.857 40.909 0.00 0.00 0.00 4.85
45 46 2.773487 ACATACAAAGGCTTACACGCA 58.227 42.857 0.00 0.00 0.00 5.24
46 47 3.824414 AACATACAAAGGCTTACACGC 57.176 42.857 0.00 0.00 0.00 5.34
47 48 6.476243 ACTAAACATACAAAGGCTTACACG 57.524 37.500 0.00 0.00 0.00 4.49
53 54 9.408648 AGCAATAATACTAAACATACAAAGGCT 57.591 29.630 0.00 0.00 0.00 4.58
62 63 8.980481 AGGTGCTAAGCAATAATACTAAACAT 57.020 30.769 0.00 0.00 41.47 2.71
63 64 7.223971 CGAGGTGCTAAGCAATAATACTAAACA 59.776 37.037 0.00 0.00 41.47 2.83
64 65 7.564988 CGAGGTGCTAAGCAATAATACTAAAC 58.435 38.462 0.00 0.00 41.47 2.01
65 66 6.202188 GCGAGGTGCTAAGCAATAATACTAAA 59.798 38.462 0.00 0.00 41.47 1.85
66 67 5.694910 GCGAGGTGCTAAGCAATAATACTAA 59.305 40.000 0.00 0.00 41.47 2.24
67 68 5.227908 GCGAGGTGCTAAGCAATAATACTA 58.772 41.667 0.00 0.00 41.47 1.82
68 69 4.058817 GCGAGGTGCTAAGCAATAATACT 58.941 43.478 0.00 0.00 41.47 2.12
69 70 3.186613 GGCGAGGTGCTAAGCAATAATAC 59.813 47.826 0.00 0.00 41.47 1.89
70 71 3.399330 GGCGAGGTGCTAAGCAATAATA 58.601 45.455 0.00 0.00 41.47 0.98
71 72 2.222027 GGCGAGGTGCTAAGCAATAAT 58.778 47.619 0.00 0.00 41.47 1.28
72 73 1.663695 GGCGAGGTGCTAAGCAATAA 58.336 50.000 0.00 0.00 41.47 1.40
73 74 0.179056 GGGCGAGGTGCTAAGCAATA 60.179 55.000 0.00 0.00 41.47 1.90
74 75 1.452108 GGGCGAGGTGCTAAGCAAT 60.452 57.895 0.00 0.00 41.47 3.56
75 76 2.046314 GGGCGAGGTGCTAAGCAA 60.046 61.111 0.00 0.00 41.47 3.91
76 77 4.096003 GGGGCGAGGTGCTAAGCA 62.096 66.667 0.00 0.00 45.43 3.91
90 91 4.493747 GACTCGAAGACGGCGGGG 62.494 72.222 13.24 0.00 40.21 5.73
91 92 4.493747 GGACTCGAAGACGGCGGG 62.494 72.222 13.24 0.00 40.21 6.13
92 93 4.493747 GGGACTCGAAGACGGCGG 62.494 72.222 13.24 0.00 40.21 6.13
93 94 4.831307 CGGGACTCGAAGACGGCG 62.831 72.222 4.80 4.80 42.43 6.46
94 95 3.745803 ACGGGACTCGAAGACGGC 61.746 66.667 0.00 0.00 42.43 5.68
95 96 2.178521 CACGGGACTCGAAGACGG 59.821 66.667 0.00 0.00 42.43 4.79
96 97 2.504244 GCACGGGACTCGAAGACG 60.504 66.667 0.00 0.00 42.43 4.18
97 98 1.153997 GAGCACGGGACTCGAAGAC 60.154 63.158 0.00 0.00 42.43 3.01
98 99 2.341101 GGAGCACGGGACTCGAAGA 61.341 63.158 0.00 0.00 42.43 2.87
99 100 2.182030 GGAGCACGGGACTCGAAG 59.818 66.667 0.00 0.00 42.43 3.79
100 101 3.379445 GGGAGCACGGGACTCGAA 61.379 66.667 0.00 0.00 42.43 3.71
103 104 3.692406 AACGGGAGCACGGGACTC 61.692 66.667 0.00 0.00 38.39 3.36
104 105 4.003788 CAACGGGAGCACGGGACT 62.004 66.667 0.00 0.00 38.39 3.85
115 116 4.899433 CTGTAAGAGCGTCTCCAACGGG 62.899 59.091 0.00 0.00 44.92 5.28
116 117 1.732732 CTGTAAGAGCGTCTCCAACGG 60.733 57.143 0.00 4.26 44.92 4.44
117 118 1.618861 CTGTAAGAGCGTCTCCAACG 58.381 55.000 3.66 0.00 46.80 4.10
118 119 1.351153 GCTGTAAGAGCGTCTCCAAC 58.649 55.000 3.66 3.69 38.15 3.77
119 120 3.814577 GCTGTAAGAGCGTCTCCAA 57.185 52.632 3.66 0.00 38.15 3.53
128 129 3.879892 GGCTTTTATCTGGGCTGTAAGAG 59.120 47.826 0.00 0.00 34.07 2.85
129 130 3.265737 TGGCTTTTATCTGGGCTGTAAGA 59.734 43.478 0.00 0.00 34.07 2.10
130 131 3.620488 TGGCTTTTATCTGGGCTGTAAG 58.380 45.455 0.00 0.00 0.00 2.34
131 132 3.730215 TGGCTTTTATCTGGGCTGTAA 57.270 42.857 0.00 0.00 0.00 2.41
132 133 3.245087 TGTTGGCTTTTATCTGGGCTGTA 60.245 43.478 0.00 0.00 0.00 2.74
133 134 2.171003 GTTGGCTTTTATCTGGGCTGT 58.829 47.619 0.00 0.00 0.00 4.40
134 135 2.094545 GTGTTGGCTTTTATCTGGGCTG 60.095 50.000 0.00 0.00 0.00 4.85
135 136 2.171003 GTGTTGGCTTTTATCTGGGCT 58.829 47.619 0.00 0.00 0.00 5.19
136 137 1.892474 TGTGTTGGCTTTTATCTGGGC 59.108 47.619 0.00 0.00 0.00 5.36
137 138 3.181497 CGATGTGTTGGCTTTTATCTGGG 60.181 47.826 0.00 0.00 0.00 4.45
138 139 3.731867 GCGATGTGTTGGCTTTTATCTGG 60.732 47.826 0.00 0.00 0.00 3.86
139 140 3.429085 GCGATGTGTTGGCTTTTATCTG 58.571 45.455 0.00 0.00 0.00 2.90
140 141 2.095853 CGCGATGTGTTGGCTTTTATCT 59.904 45.455 0.00 0.00 0.00 1.98
141 142 2.440501 CGCGATGTGTTGGCTTTTATC 58.559 47.619 0.00 0.00 0.00 1.75
142 143 1.467374 GCGCGATGTGTTGGCTTTTAT 60.467 47.619 12.10 0.00 0.00 1.40
143 144 0.109964 GCGCGATGTGTTGGCTTTTA 60.110 50.000 12.10 0.00 0.00 1.52
144 145 1.371635 GCGCGATGTGTTGGCTTTT 60.372 52.632 12.10 0.00 0.00 2.27
145 146 2.255252 GCGCGATGTGTTGGCTTT 59.745 55.556 12.10 0.00 0.00 3.51
146 147 3.737172 GGCGCGATGTGTTGGCTT 61.737 61.111 12.10 0.00 0.00 4.35
164 165 3.309506 TTTTGGGTGCCATGGCGG 61.310 61.111 30.87 0.00 45.51 6.13
165 166 2.048316 GTTTTGGGTGCCATGGCG 60.048 61.111 30.87 0.00 45.51 5.69
166 167 2.171209 GAGGTTTTGGGTGCCATGGC 62.171 60.000 30.54 30.54 42.35 4.40
167 168 1.876497 CGAGGTTTTGGGTGCCATGG 61.876 60.000 7.63 7.63 31.53 3.66
168 169 1.586028 CGAGGTTTTGGGTGCCATG 59.414 57.895 0.00 0.00 31.53 3.66
169 170 2.275380 GCGAGGTTTTGGGTGCCAT 61.275 57.895 0.00 0.00 31.53 4.40
170 171 2.909965 GCGAGGTTTTGGGTGCCA 60.910 61.111 0.00 0.00 0.00 4.92
171 172 3.680786 GGCGAGGTTTTGGGTGCC 61.681 66.667 0.00 0.00 35.04 5.01
172 173 3.680786 GGGCGAGGTTTTGGGTGC 61.681 66.667 0.00 0.00 0.00 5.01
173 174 2.989253 GGGGCGAGGTTTTGGGTG 60.989 66.667 0.00 0.00 0.00 4.61
174 175 4.653888 CGGGGCGAGGTTTTGGGT 62.654 66.667 0.00 0.00 0.00 4.51
198 199 2.281484 GCGAGGTTTCTGGGTGCA 60.281 61.111 0.00 0.00 0.00 4.57
222 223 3.827898 CTGCGAGGGAGTCCGTCC 61.828 72.222 22.99 16.64 46.10 4.79
223 224 1.310933 TAACTGCGAGGGAGTCCGTC 61.311 60.000 19.95 19.95 38.33 4.79
224 225 1.303888 TAACTGCGAGGGAGTCCGT 60.304 57.895 3.45 3.45 38.33 4.69
239 240 1.067495 ACCAGCAGAGAAGCGAGTAAC 60.067 52.381 0.00 0.00 40.15 2.50
241 242 1.743958 GTACCAGCAGAGAAGCGAGTA 59.256 52.381 0.00 0.00 40.15 2.59
268 279 3.439293 AGATGAATCTACAGCGAACGTG 58.561 45.455 0.00 0.00 34.85 4.49
300 311 4.537433 ATCGGCGAGGGAAGCAGC 62.537 66.667 17.22 0.00 36.08 5.25
301 312 2.587194 CATCGGCGAGGGAAGCAG 60.587 66.667 17.22 0.00 36.08 4.24
302 313 4.161295 CCATCGGCGAGGGAAGCA 62.161 66.667 34.87 0.00 35.26 3.91
312 323 2.180131 GAGATTGCATCGCCATCGGC 62.180 60.000 0.00 0.00 46.75 5.54
317 328 0.105593 GAGGAGAGATTGCATCGCCA 59.894 55.000 10.64 0.00 38.94 5.69
341 352 1.339727 GGTAAATCTGCGAACAGGGGT 60.340 52.381 0.00 0.00 44.59 4.95
355 366 1.054978 GGGGAGAGGAGGCGGTAAAT 61.055 60.000 0.00 0.00 0.00 1.40
358 369 3.352748 TGGGGAGAGGAGGCGGTA 61.353 66.667 0.00 0.00 0.00 4.02
428 439 0.107508 AATGGTCATCGGTGAGGCTG 60.108 55.000 0.00 0.00 34.36 4.85
429 440 0.107508 CAATGGTCATCGGTGAGGCT 60.108 55.000 0.00 0.00 34.36 4.58
431 442 0.253044 ACCAATGGTCATCGGTGAGG 59.747 55.000 0.00 0.00 34.36 3.86
432 443 1.739466 CAACCAATGGTCATCGGTGAG 59.261 52.381 4.95 0.00 33.12 3.51
433 444 1.819928 CAACCAATGGTCATCGGTGA 58.180 50.000 4.95 0.00 33.12 4.02
434 445 0.171007 GCAACCAATGGTCATCGGTG 59.829 55.000 4.95 0.00 33.12 4.94
435 446 0.038166 AGCAACCAATGGTCATCGGT 59.962 50.000 4.95 0.00 33.56 4.69
436 447 1.670811 GTAGCAACCAATGGTCATCGG 59.329 52.381 4.95 0.00 40.93 4.18
437 448 2.352651 CAGTAGCAACCAATGGTCATCG 59.647 50.000 4.95 0.00 40.93 3.84
438 449 2.098117 GCAGTAGCAACCAATGGTCATC 59.902 50.000 4.95 0.00 40.93 2.92
439 450 2.094675 GCAGTAGCAACCAATGGTCAT 58.905 47.619 4.95 0.00 40.93 3.06
440 451 1.533625 GCAGTAGCAACCAATGGTCA 58.466 50.000 4.95 0.00 40.93 4.02
452 463 2.125512 CCTGGACGGTGCAGTAGC 60.126 66.667 24.98 0.00 33.66 3.58
453 464 3.377656 ACCTGGACGGTGCAGTAG 58.622 61.111 24.98 14.83 46.80 2.57
461 472 2.350388 CGTCAAAATTCAACCTGGACGG 60.350 50.000 0.00 0.00 41.89 4.79
462 473 2.546368 TCGTCAAAATTCAACCTGGACG 59.454 45.455 0.00 0.00 45.56 4.79
463 474 4.561735 TTCGTCAAAATTCAACCTGGAC 57.438 40.909 0.00 0.00 0.00 4.02
464 475 5.782893 AATTCGTCAAAATTCAACCTGGA 57.217 34.783 0.00 0.00 0.00 3.86
465 476 5.405269 GGAAATTCGTCAAAATTCAACCTGG 59.595 40.000 0.00 0.00 0.00 4.45
466 477 5.405269 GGGAAATTCGTCAAAATTCAACCTG 59.595 40.000 0.00 0.00 0.00 4.00
467 478 5.510690 GGGGAAATTCGTCAAAATTCAACCT 60.511 40.000 0.00 0.00 0.00 3.50
468 479 4.688879 GGGGAAATTCGTCAAAATTCAACC 59.311 41.667 0.00 0.00 0.00 3.77
469 480 4.688879 GGGGGAAATTCGTCAAAATTCAAC 59.311 41.667 0.00 0.00 0.00 3.18
470 481 4.888917 GGGGGAAATTCGTCAAAATTCAA 58.111 39.130 0.00 0.00 0.00 2.69
471 482 4.529109 GGGGGAAATTCGTCAAAATTCA 57.471 40.909 0.00 0.00 0.00 2.57
506 517 9.598517 AGTTGTTCTAAAGCAAATTCATCAAAA 57.401 25.926 0.00 0.00 0.00 2.44
521 532 5.130350 AGCCTGCACTTTAGTTGTTCTAAA 58.870 37.500 0.00 0.00 43.65 1.85
522 533 4.714632 AGCCTGCACTTTAGTTGTTCTAA 58.285 39.130 0.00 0.00 36.91 2.10
523 534 4.351874 AGCCTGCACTTTAGTTGTTCTA 57.648 40.909 0.00 0.00 0.00 2.10
524 535 3.214696 AGCCTGCACTTTAGTTGTTCT 57.785 42.857 0.00 0.00 0.00 3.01
525 536 3.990318 AAGCCTGCACTTTAGTTGTTC 57.010 42.857 0.00 0.00 0.00 3.18
526 537 4.714632 TCTAAGCCTGCACTTTAGTTGTT 58.285 39.130 0.00 0.00 0.00 2.83
527 538 4.319177 CTCTAAGCCTGCACTTTAGTTGT 58.681 43.478 0.00 0.00 0.00 3.32
528 539 3.126000 GCTCTAAGCCTGCACTTTAGTTG 59.874 47.826 0.00 0.00 34.48 3.16
529 540 3.244561 TGCTCTAAGCCTGCACTTTAGTT 60.245 43.478 0.00 0.00 41.51 2.24
530 541 2.303022 TGCTCTAAGCCTGCACTTTAGT 59.697 45.455 0.00 0.00 41.51 2.24
531 542 2.977914 TGCTCTAAGCCTGCACTTTAG 58.022 47.619 0.00 0.00 41.51 1.85
532 543 3.198635 AGATGCTCTAAGCCTGCACTTTA 59.801 43.478 0.00 0.00 41.51 1.85
533 544 2.026449 AGATGCTCTAAGCCTGCACTTT 60.026 45.455 0.00 0.00 41.51 2.66
534 545 1.558756 AGATGCTCTAAGCCTGCACTT 59.441 47.619 0.00 0.00 41.51 3.16
535 546 1.138661 GAGATGCTCTAAGCCTGCACT 59.861 52.381 0.00 0.00 41.51 4.40
536 547 1.138661 AGAGATGCTCTAAGCCTGCAC 59.861 52.381 0.00 0.00 41.51 4.57
537 548 1.493861 AGAGATGCTCTAAGCCTGCA 58.506 50.000 0.00 0.00 41.51 4.41
538 549 3.742433 TTAGAGATGCTCTAAGCCTGC 57.258 47.619 11.70 0.00 44.85 4.85
544 555 4.520874 CGGGATCTGTTAGAGATGCTCTAA 59.479 45.833 10.34 11.70 46.70 2.10
545 556 4.075682 CGGGATCTGTTAGAGATGCTCTA 58.924 47.826 10.34 0.22 46.30 2.43
546 557 2.890311 CGGGATCTGTTAGAGATGCTCT 59.110 50.000 10.34 2.22 46.30 4.09
547 558 2.609244 GCGGGATCTGTTAGAGATGCTC 60.609 54.545 10.34 1.22 46.30 4.26
548 559 1.342819 GCGGGATCTGTTAGAGATGCT 59.657 52.381 10.34 0.00 46.30 3.79
549 560 1.069204 TGCGGGATCTGTTAGAGATGC 59.931 52.381 2.35 2.35 46.34 3.91
550 561 3.459232 TTGCGGGATCTGTTAGAGATG 57.541 47.619 0.00 0.00 41.91 2.90
551 562 3.432326 GGTTTGCGGGATCTGTTAGAGAT 60.432 47.826 0.00 0.00 44.78 2.75
552 563 2.093658 GGTTTGCGGGATCTGTTAGAGA 60.094 50.000 0.00 0.00 34.25 3.10
553 564 2.280628 GGTTTGCGGGATCTGTTAGAG 58.719 52.381 0.00 0.00 0.00 2.43
554 565 1.404986 CGGTTTGCGGGATCTGTTAGA 60.405 52.381 0.00 0.00 0.00 2.10
555 566 1.006832 CGGTTTGCGGGATCTGTTAG 58.993 55.000 0.00 0.00 0.00 2.34
556 567 0.322322 ACGGTTTGCGGGATCTGTTA 59.678 50.000 0.00 0.00 0.00 2.41
557 568 1.072505 ACGGTTTGCGGGATCTGTT 59.927 52.632 0.00 0.00 0.00 3.16
558 569 1.671054 CACGGTTTGCGGGATCTGT 60.671 57.895 0.00 0.00 0.00 3.41
559 570 3.039202 GCACGGTTTGCGGGATCTG 62.039 63.158 0.00 0.00 42.79 2.90
560 571 2.746277 GCACGGTTTGCGGGATCT 60.746 61.111 0.00 0.00 42.79 2.75
583 594 0.933047 GCGAACAGACGGTTTTTGCC 60.933 55.000 0.00 0.00 40.63 4.52
584 595 1.259544 CGCGAACAGACGGTTTTTGC 61.260 55.000 0.00 0.00 40.63 3.68
585 596 0.656205 CCGCGAACAGACGGTTTTTG 60.656 55.000 8.23 0.00 44.46 2.44
586 597 1.644913 CCGCGAACAGACGGTTTTT 59.355 52.632 8.23 0.00 44.46 1.94
587 598 3.326109 CCGCGAACAGACGGTTTT 58.674 55.556 8.23 0.00 44.46 2.43
593 604 3.966026 CTCCGTCCCGCGAACAGAC 62.966 68.421 8.23 8.10 44.77 3.51
594 605 3.744719 CTCCGTCCCGCGAACAGA 61.745 66.667 8.23 2.25 44.77 3.41
595 606 4.796231 CCTCCGTCCCGCGAACAG 62.796 72.222 8.23 0.00 44.77 3.16
613 624 1.367659 TTATTCGGGCGGTAAAACGG 58.632 50.000 0.00 0.00 0.00 4.44
614 625 3.546616 GGATTTATTCGGGCGGTAAAACG 60.547 47.826 0.00 0.00 0.00 3.60
615 626 3.243168 GGGATTTATTCGGGCGGTAAAAC 60.243 47.826 0.00 0.00 0.00 2.43
616 627 2.950975 GGGATTTATTCGGGCGGTAAAA 59.049 45.455 0.00 0.00 0.00 1.52
617 628 2.574450 GGGATTTATTCGGGCGGTAAA 58.426 47.619 0.00 0.00 0.00 2.01
618 629 1.540797 CGGGATTTATTCGGGCGGTAA 60.541 52.381 0.00 0.00 0.00 2.85
619 630 0.033781 CGGGATTTATTCGGGCGGTA 59.966 55.000 0.00 0.00 0.00 4.02
620 631 1.227734 CGGGATTTATTCGGGCGGT 60.228 57.895 0.00 0.00 0.00 5.68
621 632 2.613506 GCGGGATTTATTCGGGCGG 61.614 63.158 0.00 0.00 0.00 6.13
622 633 1.440938 TTGCGGGATTTATTCGGGCG 61.441 55.000 0.00 0.00 0.00 6.13
623 634 0.741915 TTTGCGGGATTTATTCGGGC 59.258 50.000 0.00 0.00 0.00 6.13
624 635 3.067461 TGAATTTGCGGGATTTATTCGGG 59.933 43.478 0.00 0.00 0.00 5.14
625 636 4.290155 CTGAATTTGCGGGATTTATTCGG 58.710 43.478 0.00 0.00 0.00 4.30
626 637 3.730715 GCTGAATTTGCGGGATTTATTCG 59.269 43.478 0.00 0.00 0.00 3.34
627 638 4.051237 GGCTGAATTTGCGGGATTTATTC 58.949 43.478 0.00 0.00 0.00 1.75
628 639 3.181466 GGGCTGAATTTGCGGGATTTATT 60.181 43.478 0.00 0.00 0.00 1.40
629 640 2.365293 GGGCTGAATTTGCGGGATTTAT 59.635 45.455 0.00 0.00 0.00 1.40
630 641 1.754226 GGGCTGAATTTGCGGGATTTA 59.246 47.619 0.00 0.00 0.00 1.40
631 642 0.536724 GGGCTGAATTTGCGGGATTT 59.463 50.000 0.00 0.00 0.00 2.17
632 643 0.614415 TGGGCTGAATTTGCGGGATT 60.614 50.000 0.00 0.00 0.00 3.01
633 644 0.614415 TTGGGCTGAATTTGCGGGAT 60.614 50.000 0.00 0.00 0.00 3.85
634 645 1.228706 TTGGGCTGAATTTGCGGGA 60.229 52.632 0.00 0.00 0.00 5.14
635 646 1.079888 GTTGGGCTGAATTTGCGGG 60.080 57.895 0.00 0.00 0.00 6.13
636 647 0.667184 GTGTTGGGCTGAATTTGCGG 60.667 55.000 0.00 0.00 0.00 5.69
637 648 0.031857 TGTGTTGGGCTGAATTTGCG 59.968 50.000 0.00 0.00 0.00 4.85
638 649 1.787012 CTGTGTTGGGCTGAATTTGC 58.213 50.000 0.00 0.00 0.00 3.68
639 650 1.068895 TGCTGTGTTGGGCTGAATTTG 59.931 47.619 0.00 0.00 0.00 2.32
640 651 1.412079 TGCTGTGTTGGGCTGAATTT 58.588 45.000 0.00 0.00 0.00 1.82
641 652 1.069049 GTTGCTGTGTTGGGCTGAATT 59.931 47.619 0.00 0.00 0.00 2.17
642 653 0.675633 GTTGCTGTGTTGGGCTGAAT 59.324 50.000 0.00 0.00 0.00 2.57
643 654 0.682532 TGTTGCTGTGTTGGGCTGAA 60.683 50.000 0.00 0.00 0.00 3.02
644 655 1.077140 TGTTGCTGTGTTGGGCTGA 60.077 52.632 0.00 0.00 0.00 4.26
645 656 1.066257 GTGTTGCTGTGTTGGGCTG 59.934 57.895 0.00 0.00 0.00 4.85
646 657 2.480610 CGTGTTGCTGTGTTGGGCT 61.481 57.895 0.00 0.00 0.00 5.19
647 658 2.026014 CGTGTTGCTGTGTTGGGC 59.974 61.111 0.00 0.00 0.00 5.36
648 659 2.721231 CCGTGTTGCTGTGTTGGG 59.279 61.111 0.00 0.00 0.00 4.12
649 660 2.026014 GCCGTGTTGCTGTGTTGG 59.974 61.111 0.00 0.00 0.00 3.77
650 661 3.110139 AGCCGTGTTGCTGTGTTG 58.890 55.556 0.00 0.00 40.90 3.33
656 667 2.546494 GCACTTCAGCCGTGTTGCT 61.546 57.895 0.00 0.00 44.00 3.91
657 668 2.050985 GCACTTCAGCCGTGTTGC 60.051 61.111 0.00 0.00 34.91 4.17
658 669 1.280746 CTGCACTTCAGCCGTGTTG 59.719 57.895 0.00 0.00 35.78 3.33
659 670 1.893808 CCTGCACTTCAGCCGTGTT 60.894 57.895 0.00 0.00 41.50 3.32
660 671 2.281070 CCTGCACTTCAGCCGTGT 60.281 61.111 0.00 0.00 41.50 4.49
661 672 3.730761 GCCTGCACTTCAGCCGTG 61.731 66.667 0.00 0.00 41.50 4.94
662 673 3.946201 AGCCTGCACTTCAGCCGT 61.946 61.111 0.00 0.00 41.50 5.68
663 674 3.429141 CAGCCTGCACTTCAGCCG 61.429 66.667 0.00 0.00 41.50 5.52
664 675 1.174712 TTTCAGCCTGCACTTCAGCC 61.175 55.000 0.00 0.00 41.50 4.85
665 676 0.670162 TTTTCAGCCTGCACTTCAGC 59.330 50.000 0.00 0.00 41.50 4.26
666 677 1.952296 AGTTTTCAGCCTGCACTTCAG 59.048 47.619 0.00 0.00 42.49 3.02
667 678 2.057137 AGTTTTCAGCCTGCACTTCA 57.943 45.000 0.00 0.00 0.00 3.02
668 679 3.187432 GTCTAGTTTTCAGCCTGCACTTC 59.813 47.826 0.00 0.00 0.00 3.01
692 703 0.175531 GTGTTGCTGTGTTGGGCTTT 59.824 50.000 0.00 0.00 0.00 3.51
693 704 0.969917 TGTGTTGCTGTGTTGGGCTT 60.970 50.000 0.00 0.00 0.00 4.35
694 705 0.969917 TTGTGTTGCTGTGTTGGGCT 60.970 50.000 0.00 0.00 0.00 5.19
695 706 0.108424 TTTGTGTTGCTGTGTTGGGC 60.108 50.000 0.00 0.00 0.00 5.36
696 707 1.925229 CTTTGTGTTGCTGTGTTGGG 58.075 50.000 0.00 0.00 0.00 4.12
697 708 1.280066 GCTTTGTGTTGCTGTGTTGG 58.720 50.000 0.00 0.00 0.00 3.77
698 709 1.280066 GGCTTTGTGTTGCTGTGTTG 58.720 50.000 0.00 0.00 0.00 3.33
699 710 0.175531 GGGCTTTGTGTTGCTGTGTT 59.824 50.000 0.00 0.00 0.00 3.32
700 711 0.969917 TGGGCTTTGTGTTGCTGTGT 60.970 50.000 0.00 0.00 0.00 3.72
701 712 0.175302 TTGGGCTTTGTGTTGCTGTG 59.825 50.000 0.00 0.00 0.00 3.66
702 713 1.122227 ATTGGGCTTTGTGTTGCTGT 58.878 45.000 0.00 0.00 0.00 4.40
703 714 2.035704 TGTATTGGGCTTTGTGTTGCTG 59.964 45.455 0.00 0.00 0.00 4.41
704 715 2.315176 TGTATTGGGCTTTGTGTTGCT 58.685 42.857 0.00 0.00 0.00 3.91
705 716 2.810439 TGTATTGGGCTTTGTGTTGC 57.190 45.000 0.00 0.00 0.00 4.17
706 717 4.517952 TGATGTATTGGGCTTTGTGTTG 57.482 40.909 0.00 0.00 0.00 3.33
707 718 5.543507 TTTGATGTATTGGGCTTTGTGTT 57.456 34.783 0.00 0.00 0.00 3.32
708 719 5.070313 AGTTTTGATGTATTGGGCTTTGTGT 59.930 36.000 0.00 0.00 0.00 3.72
709 720 5.540911 AGTTTTGATGTATTGGGCTTTGTG 58.459 37.500 0.00 0.00 0.00 3.33
710 721 5.279456 GGAGTTTTGATGTATTGGGCTTTGT 60.279 40.000 0.00 0.00 0.00 2.83
711 722 5.047092 AGGAGTTTTGATGTATTGGGCTTTG 60.047 40.000 0.00 0.00 0.00 2.77
721 732 6.368791 CGAAGTGAATGAGGAGTTTTGATGTA 59.631 38.462 0.00 0.00 0.00 2.29
725 736 3.498397 GCGAAGTGAATGAGGAGTTTTGA 59.502 43.478 0.00 0.00 0.00 2.69
729 740 1.625818 AGGCGAAGTGAATGAGGAGTT 59.374 47.619 0.00 0.00 0.00 3.01
750 761 0.321653 GTGGCGTGGAACTGGAAGAT 60.322 55.000 0.00 0.00 37.43 2.40
845 900 3.324099 GAAGCGAGTGACGGCGAGA 62.324 63.158 16.62 0.00 42.83 4.04
964 1026 4.072088 CGGTCAACCTGCGAACGC 62.072 66.667 12.33 12.33 36.69 4.84
1034 1096 1.277842 TGAGCTTGTCCGCTGGATTAA 59.722 47.619 0.67 0.45 41.08 1.40
1035 1097 0.901827 TGAGCTTGTCCGCTGGATTA 59.098 50.000 0.67 0.00 41.08 1.75
1056 1118 4.620131 GGATCTCGATGAGGAGGTCTTCC 61.620 56.522 3.17 0.00 42.58 3.46
1181 5119 1.402896 GGCGAGGTCATGGAGATGGA 61.403 60.000 0.00 0.00 0.00 3.41
1226 5164 0.599728 TGAAAAATGGCCAACGCTGC 60.600 50.000 10.96 0.00 34.44 5.25
1231 5169 4.091365 GCGAAGTAATGAAAAATGGCCAAC 59.909 41.667 10.96 0.00 0.00 3.77
1232 5170 4.241681 GCGAAGTAATGAAAAATGGCCAA 58.758 39.130 10.96 0.00 0.00 4.52
1237 5175 6.674090 GCGAAATTGCGAAGTAATGAAAAATG 59.326 34.615 10.87 0.00 43.28 2.32
1242 5180 3.426963 GGGCGAAATTGCGAAGTAATGAA 60.427 43.478 10.87 0.00 43.28 2.57
1246 5184 1.524848 TGGGCGAAATTGCGAAGTAA 58.475 45.000 10.87 0.00 35.99 2.24
1247 5185 1.400142 CATGGGCGAAATTGCGAAGTA 59.600 47.619 10.87 0.00 35.06 2.24
1248 5186 0.171007 CATGGGCGAAATTGCGAAGT 59.829 50.000 10.87 0.00 35.06 3.01
1249 5187 0.171007 ACATGGGCGAAATTGCGAAG 59.829 50.000 10.87 0.00 35.06 3.79
1557 9379 1.134877 TCGTCGTCGTCCTCTGTATCT 60.135 52.381 1.33 0.00 38.33 1.98
1560 14741 1.347097 CGTCGTCGTCGTCCTCTGTA 61.347 60.000 3.67 0.00 38.33 2.74
1561 14742 2.665395 CGTCGTCGTCGTCCTCTGT 61.665 63.158 3.67 0.00 38.33 3.41
1562 14743 1.694018 ATCGTCGTCGTCGTCCTCTG 61.694 60.000 11.41 0.00 38.33 3.35
1563 14744 1.447489 ATCGTCGTCGTCGTCCTCT 60.447 57.895 11.41 0.00 38.33 3.69
1564 14745 1.296722 CATCGTCGTCGTCGTCCTC 60.297 63.158 11.41 0.00 38.33 3.71
1565 14746 1.088340 ATCATCGTCGTCGTCGTCCT 61.088 55.000 11.41 0.00 38.33 3.85
1566 14747 0.578683 TATCATCGTCGTCGTCGTCC 59.421 55.000 11.41 0.00 38.33 4.79
1567 14748 1.257415 ACTATCATCGTCGTCGTCGTC 59.743 52.381 11.41 0.00 38.33 4.20
1568 14749 1.005242 CACTATCATCGTCGTCGTCGT 60.005 52.381 11.41 0.00 38.33 4.34
1572 14753 2.575363 CCATCACTATCATCGTCGTCG 58.425 52.381 0.00 0.00 38.55 5.12
1575 14756 1.000274 TGGCCATCACTATCATCGTCG 60.000 52.381 0.00 0.00 0.00 5.12
1582 14763 2.309528 TTGACGTGGCCATCACTATC 57.690 50.000 9.72 1.11 43.94 2.08
1583 14764 2.632377 CTTTGACGTGGCCATCACTAT 58.368 47.619 9.72 0.00 43.94 2.12
1584 14765 1.338674 CCTTTGACGTGGCCATCACTA 60.339 52.381 9.72 0.00 43.94 2.74
1620 14801 1.137594 TCCAGACCCCGGTTTTGGAT 61.138 55.000 13.97 0.00 37.30 3.41
1652 14833 1.303317 CTAGCAAAGCCCCAACCGT 60.303 57.895 0.00 0.00 0.00 4.83
1665 14846 3.491342 AGAATCGCTCACTATCCTAGCA 58.509 45.455 0.00 0.00 35.98 3.49
1725 14909 3.295273 AGCACCGCAGACTCGACA 61.295 61.111 0.00 0.00 0.00 4.35
1803 14994 8.190326 ACCCGTAATCAACATCTATTATGAGA 57.810 34.615 0.00 0.00 29.68 3.27
1805 14996 8.425703 TGAACCCGTAATCAACATCTATTATGA 58.574 33.333 0.00 0.00 29.68 2.15
1837 15028 0.675083 TACAAACGCCCTCGAGACAA 59.325 50.000 15.71 0.00 39.41 3.18
1883 15074 6.574350 AGAACCCAGATCGACAGTTTATAAG 58.426 40.000 0.00 0.00 0.00 1.73
1918 15109 1.134098 CAAGACCCACACTTCACTGGT 60.134 52.381 0.00 0.00 0.00 4.00
1919 15110 1.597742 CAAGACCCACACTTCACTGG 58.402 55.000 0.00 0.00 0.00 4.00
1945 15136 8.956426 TCCAAATAGATTCAAATACTTGACACC 58.044 33.333 0.00 0.00 41.34 4.16
2052 15243 8.531146 TCATAAGACATCAGTACTTTGTCATGA 58.469 33.333 26.20 23.40 41.71 3.07
2128 16738 5.559148 ACATAAGGAAGATAAGGCTCCAG 57.441 43.478 0.00 0.00 0.00 3.86
2136 16746 8.388656 AGTACAAGGGAACATAAGGAAGATAA 57.611 34.615 0.00 0.00 0.00 1.75
2217 16827 9.177608 TGATTCACCATTATCTAAAAGGTCAAG 57.822 33.333 0.00 0.00 0.00 3.02
2334 16954 8.806146 ACAGATAACCTCATAAAGTGCAAAAAT 58.194 29.630 0.00 0.00 0.00 1.82
2382 17025 1.349357 TGGCAACCTGTACACATAGCA 59.651 47.619 0.00 0.00 0.00 3.49
2488 17142 1.747774 GCCAACAGCCCAACACAAT 59.252 52.632 0.00 0.00 34.35 2.71
2591 17245 6.390048 TGTATTCCCACCCATGTTTTACTA 57.610 37.500 0.00 0.00 0.00 1.82
2678 17332 0.326143 AACATAAACCCCCATGCCCC 60.326 55.000 0.00 0.00 0.00 5.80
2688 17342 5.468540 AAAGGAGCAAAGGAACATAAACC 57.531 39.130 0.00 0.00 0.00 3.27
2717 17371 4.214310 TGACAGGAGCAAAGGATTTTTCA 58.786 39.130 0.00 0.00 35.03 2.69
2718 17372 4.853924 TGACAGGAGCAAAGGATTTTTC 57.146 40.909 0.00 0.00 35.03 2.29
2878 17543 5.248477 AGTTTCAGGCTTAGATCCAACACTA 59.752 40.000 0.00 0.00 0.00 2.74
2930 17596 3.001414 CAGCAGGAAGTGAATCAGACAG 58.999 50.000 0.00 0.00 0.00 3.51
2971 17637 3.518003 GCATCCGCTGGCAAAGAT 58.482 55.556 0.00 0.00 34.30 2.40
2980 17646 4.357808 AACGACAGTTAAAAGCATCCGCT 61.358 43.478 0.00 0.00 45.01 5.52
2992 17665 5.277586 CCTGTGTTGCATTAAACGACAGTTA 60.278 40.000 13.15 0.00 40.18 2.24
3008 17681 5.127845 AGACAGTACCTATCATCCTGTGTTG 59.872 44.000 0.00 0.00 36.56 3.33
3020 17693 5.116882 GCATCCGAAAAAGACAGTACCTAT 58.883 41.667 0.00 0.00 0.00 2.57
3028 17701 2.163818 AGACGCATCCGAAAAAGACA 57.836 45.000 0.00 0.00 38.29 3.41
3029 17702 2.991190 TGTAGACGCATCCGAAAAAGAC 59.009 45.455 0.00 0.00 38.29 3.01
3061 17734 8.800332 GTCCTACTCATTATCCCGATAAACTAA 58.200 37.037 1.44 0.00 36.90 2.24
3064 17737 6.867293 GTGTCCTACTCATTATCCCGATAAAC 59.133 42.308 1.44 0.00 36.90 2.01
3085 17760 3.997681 GGAGGCTAAAAGTTCAGAGTGTC 59.002 47.826 0.00 0.00 0.00 3.67
3096 17771 5.163884 GCGTTTTACTAGTGGAGGCTAAAAG 60.164 44.000 5.39 0.00 0.00 2.27
3130 17805 8.141909 TGATTCATATGTATTATAGCCCGTAGC 58.858 37.037 1.90 0.00 44.25 3.58
3133 17808 9.162764 GTTTGATTCATATGTATTATAGCCCGT 57.837 33.333 1.90 0.00 0.00 5.28
3134 17809 9.161629 TGTTTGATTCATATGTATTATAGCCCG 57.838 33.333 1.90 0.00 0.00 6.13
3145 17820 9.347240 CCTTAATCCTCTGTTTGATTCATATGT 57.653 33.333 1.90 0.00 33.46 2.29
3146 17821 9.347240 ACCTTAATCCTCTGTTTGATTCATATG 57.653 33.333 0.00 0.00 33.46 1.78
3147 17822 9.566432 GACCTTAATCCTCTGTTTGATTCATAT 57.434 33.333 0.00 0.00 33.46 1.78
3148 17823 7.710907 CGACCTTAATCCTCTGTTTGATTCATA 59.289 37.037 0.00 0.00 33.46 2.15
3149 17824 6.540189 CGACCTTAATCCTCTGTTTGATTCAT 59.460 38.462 0.00 0.00 33.46 2.57
3150 17825 5.874810 CGACCTTAATCCTCTGTTTGATTCA 59.125 40.000 0.00 0.00 33.46 2.57
3151 17826 5.875359 ACGACCTTAATCCTCTGTTTGATTC 59.125 40.000 0.00 0.00 33.46 2.52
3152 17827 5.805728 ACGACCTTAATCCTCTGTTTGATT 58.194 37.500 0.00 0.00 35.48 2.57
3153 17828 5.187967 AGACGACCTTAATCCTCTGTTTGAT 59.812 40.000 0.00 0.00 0.00 2.57
3154 17829 4.527038 AGACGACCTTAATCCTCTGTTTGA 59.473 41.667 0.00 0.00 0.00 2.69
3155 17830 4.822026 AGACGACCTTAATCCTCTGTTTG 58.178 43.478 0.00 0.00 0.00 2.93
3156 17831 5.011738 TGAAGACGACCTTAATCCTCTGTTT 59.988 40.000 0.00 0.00 34.68 2.83
3157 17832 4.527038 TGAAGACGACCTTAATCCTCTGTT 59.473 41.667 0.00 0.00 34.68 3.16
3158 17833 4.087182 TGAAGACGACCTTAATCCTCTGT 58.913 43.478 0.00 0.00 34.68 3.41
3159 17834 4.720649 TGAAGACGACCTTAATCCTCTG 57.279 45.455 0.00 0.00 34.68 3.35
3160 17835 4.160626 CCTTGAAGACGACCTTAATCCTCT 59.839 45.833 0.00 0.00 34.68 3.69
3161 17836 4.081586 ACCTTGAAGACGACCTTAATCCTC 60.082 45.833 0.00 0.00 34.68 3.71
3162 17837 3.838903 ACCTTGAAGACGACCTTAATCCT 59.161 43.478 0.00 0.00 34.68 3.24
3163 17838 4.182339 GACCTTGAAGACGACCTTAATCC 58.818 47.826 0.00 0.00 34.68 3.01
3164 17839 3.858238 CGACCTTGAAGACGACCTTAATC 59.142 47.826 0.00 0.00 34.68 1.75
3165 17840 3.508793 TCGACCTTGAAGACGACCTTAAT 59.491 43.478 9.47 0.00 34.68 1.40
3166 17841 2.886523 TCGACCTTGAAGACGACCTTAA 59.113 45.455 9.47 0.00 34.68 1.85
3167 17842 2.507484 TCGACCTTGAAGACGACCTTA 58.493 47.619 9.47 0.00 34.68 2.69
3168 17843 1.325355 TCGACCTTGAAGACGACCTT 58.675 50.000 9.47 0.00 37.93 3.50
3169 17844 3.031916 TCGACCTTGAAGACGACCT 57.968 52.632 9.47 0.00 0.00 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.