Multiple sequence alignment - TraesCS7D01G119000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G119000 chr7D 100.000 3209 0 0 1 3209 73854430 73851222 0.000000e+00 5927
1 TraesCS7D01G119000 chr7D 93.342 3214 205 8 3 3209 73880961 73877750 0.000000e+00 4741
2 TraesCS7D01G119000 chrUn 95.005 3143 146 9 1 3134 229310251 229307111 0.000000e+00 4924
3 TraesCS7D01G119000 chrUn 94.975 3144 146 10 1 3134 274341306 274338165 0.000000e+00 4920
4 TraesCS7D01G119000 chrUn 94.941 3143 148 9 1 3134 199874800 199877940 0.000000e+00 4913
5 TraesCS7D01G119000 chrUn 94.909 3143 148 10 1 3134 67501032 67497893 0.000000e+00 4907
6 TraesCS7D01G119000 chrUn 94.909 3143 149 9 1 3134 291535416 291538556 0.000000e+00 4907
7 TraesCS7D01G119000 chrUn 93.770 3050 174 13 1 3040 260640216 260637173 0.000000e+00 4566
8 TraesCS7D01G119000 chrUn 95.229 1048 45 4 1 1043 429159136 429160183 0.000000e+00 1653
9 TraesCS7D01G119000 chrUn 95.000 760 32 5 1 755 449022887 449022129 0.000000e+00 1188
10 TraesCS7D01G119000 chrUn 94.932 730 32 4 1 725 67492333 67491604 0.000000e+00 1138
11 TraesCS7D01G119000 chrUn 96.096 666 24 2 1 664 359783872 359784537 0.000000e+00 1085
12 TraesCS7D01G119000 chrUn 90.909 99 8 1 3111 3209 355157379 355157476 7.220000e-27 132
13 TraesCS7D01G119000 chrUn 88.889 108 9 2 3103 3209 263081838 263081733 2.600000e-26 130
14 TraesCS7D01G119000 chrUn 92.683 82 5 1 3128 3209 274336621 274336541 2.020000e-22 117
15 TraesCS7D01G119000 chrUn 85.714 98 12 1 3112 3209 342361331 342361236 5.660000e-18 102
16 TraesCS7D01G119000 chr1B 92.618 3197 224 10 1 3187 111148573 111145379 0.000000e+00 4586
17 TraesCS7D01G119000 chr1B 94.304 913 47 4 1 908 80745506 80744594 0.000000e+00 1393
18 TraesCS7D01G119000 chr5D 92.286 3215 229 12 1 3207 31477736 31474533 0.000000e+00 4545
19 TraesCS7D01G119000 chr5D 92.110 2953 215 11 266 3209 18582955 18585898 0.000000e+00 4146
20 TraesCS7D01G119000 chr5D 90.816 98 9 0 3112 3209 18845726 18845823 7.220000e-27 132
21 TraesCS7D01G119000 chr6B 91.919 99 6 1 3111 3209 111998898 111998802 1.550000e-28 137
22 TraesCS7D01G119000 chr6B 91.753 97 8 0 3111 3207 112581083 112580987 5.580000e-28 135
23 TraesCS7D01G119000 chr6B 91.753 97 7 1 3111 3207 111839522 111839427 2.010000e-27 134


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G119000 chr7D 73851222 73854430 3208 True 5927.0 5927 100.000 1 3209 1 chr7D.!!$R1 3208
1 TraesCS7D01G119000 chr7D 73877750 73880961 3211 True 4741.0 4741 93.342 3 3209 1 chr7D.!!$R2 3206
2 TraesCS7D01G119000 chrUn 229307111 229310251 3140 True 4924.0 4924 95.005 1 3134 1 chrUn.!!$R3 3133
3 TraesCS7D01G119000 chrUn 199874800 199877940 3140 False 4913.0 4913 94.941 1 3134 1 chrUn.!!$F1 3133
4 TraesCS7D01G119000 chrUn 67497893 67501032 3139 True 4907.0 4907 94.909 1 3134 1 chrUn.!!$R2 3133
5 TraesCS7D01G119000 chrUn 291535416 291538556 3140 False 4907.0 4907 94.909 1 3134 1 chrUn.!!$F2 3133
6 TraesCS7D01G119000 chrUn 260637173 260640216 3043 True 4566.0 4566 93.770 1 3040 1 chrUn.!!$R4 3039
7 TraesCS7D01G119000 chrUn 274336541 274341306 4765 True 2518.5 4920 93.829 1 3209 2 chrUn.!!$R8 3208
8 TraesCS7D01G119000 chrUn 429159136 429160183 1047 False 1653.0 1653 95.229 1 1043 1 chrUn.!!$F5 1042
9 TraesCS7D01G119000 chrUn 449022129 449022887 758 True 1188.0 1188 95.000 1 755 1 chrUn.!!$R7 754
10 TraesCS7D01G119000 chrUn 67491604 67492333 729 True 1138.0 1138 94.932 1 725 1 chrUn.!!$R1 724
11 TraesCS7D01G119000 chrUn 359783872 359784537 665 False 1085.0 1085 96.096 1 664 1 chrUn.!!$F4 663
12 TraesCS7D01G119000 chr1B 111145379 111148573 3194 True 4586.0 4586 92.618 1 3187 1 chr1B.!!$R2 3186
13 TraesCS7D01G119000 chr1B 80744594 80745506 912 True 1393.0 1393 94.304 1 908 1 chr1B.!!$R1 907
14 TraesCS7D01G119000 chr5D 31474533 31477736 3203 True 4545.0 4545 92.286 1 3207 1 chr5D.!!$R1 3206
15 TraesCS7D01G119000 chr5D 18582955 18585898 2943 False 4146.0 4146 92.110 266 3209 1 chr5D.!!$F1 2943

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
187 188 0.321653 GGGACGCAACATCCTTGACT 60.322 55.000 0.00 0.0 36.4 3.41 F
1748 1757 1.001974 CGGAAGACATTGTCAGGTGGA 59.998 52.381 18.57 0.0 34.6 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1878 1887 1.098712 GGCCACACTTTCACGGTTCA 61.099 55.0 0.0 0.0 0.0 3.18 R
2652 2664 0.179234 TGAGTGTTGTTTCCGCTGGA 59.821 50.0 0.0 0.0 0.0 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
85 86 7.587028 CGAAAGACTAATCGAACCATCTAGTAC 59.413 40.741 4.95 0.00 41.43 2.73
118 119 2.483889 CGAAGTTTCCCTCAGGATAGCC 60.484 54.545 0.00 0.00 43.54 3.93
187 188 0.321653 GGGACGCAACATCCTTGACT 60.322 55.000 0.00 0.00 36.40 3.41
295 296 2.426522 GTAAGCAGAACTGGTGATGCA 58.573 47.619 7.28 0.00 41.62 3.96
390 392 1.448540 CAGCAGGACGGTGGTCATC 60.449 63.158 0.00 0.00 45.28 2.92
425 427 5.186409 TCCGCTAAGGAGTGTATAACAACTT 59.814 40.000 0.00 0.00 45.98 2.66
664 667 3.509266 GTGAACGACACTTGCACAC 57.491 52.632 9.42 0.00 45.13 3.82
665 668 1.006832 GTGAACGACACTTGCACACT 58.993 50.000 9.42 0.00 45.13 3.55
666 669 1.396996 GTGAACGACACTTGCACACTT 59.603 47.619 9.42 0.00 45.13 3.16
837 843 7.106890 GGAGGAGTTATCTTTTCTGCTTAACT 58.893 38.462 0.00 0.00 36.19 2.24
857 863 1.152567 CCTGCCAACCCTGGAAACA 60.153 57.895 0.00 0.00 46.92 2.83
874 880 5.427392 GAAACAGTTCAGCCGGAGGTAGT 62.427 52.174 5.05 0.00 41.42 2.73
920 926 4.602259 CGTGTGGTGTCCGGTGCT 62.602 66.667 0.00 0.00 0.00 4.40
1046 1052 1.568504 ATGTAGGCAAGGGAAGTCGA 58.431 50.000 0.00 0.00 0.00 4.20
1140 1146 3.127533 GCTGTCGGCGGATTGCTT 61.128 61.111 7.21 0.00 45.43 3.91
1152 1158 1.162698 GATTGCTTGAGCTGCTCACA 58.837 50.000 30.47 22.73 40.46 3.58
1314 1321 1.806461 GATGGTCCTCGCGGATGCTA 61.806 60.000 6.13 0.00 42.43 3.49
1334 1341 1.538047 ACGCAATGTGATTTCTGCCT 58.462 45.000 0.00 0.00 0.00 4.75
1343 1350 3.769300 TGTGATTTCTGCCTAGTGCTCTA 59.231 43.478 5.06 0.00 42.00 2.43
1349 1356 4.826274 TCTGCCTAGTGCTCTAAATGTT 57.174 40.909 0.00 0.00 42.00 2.71
1428 1435 1.095807 GGTAGCCAAATGCCTCGTCC 61.096 60.000 0.00 0.00 42.71 4.79
1442 1449 3.380637 GCCTCGTCCTCTAATTAGTGACA 59.619 47.826 24.36 16.08 0.00 3.58
1462 1469 3.876914 ACACGCATGAATGGATTAACGAT 59.123 39.130 0.00 0.00 0.00 3.73
1464 1471 5.050363 ACACGCATGAATGGATTAACGATAC 60.050 40.000 0.00 0.00 0.00 2.24
1474 1481 4.468510 TGGATTAACGATACTCCCACTGTT 59.531 41.667 6.63 0.00 31.46 3.16
1715 1724 2.598787 CCAAGGCCCGGTCTTACCA 61.599 63.158 3.32 0.00 38.47 3.25
1748 1757 1.001974 CGGAAGACATTGTCAGGTGGA 59.998 52.381 18.57 0.00 34.60 4.02
1789 1798 6.258160 GCACATCTGTTAAAAGATAACGCAT 58.742 36.000 7.86 0.00 35.09 4.73
1796 1805 5.106475 TGTTAAAAGATAACGCATGTGTCCC 60.106 40.000 13.23 5.04 0.00 4.46
1804 1813 1.065199 ACGCATGTGTCCCAAGATGAT 60.065 47.619 5.96 0.00 0.00 2.45
1857 1866 7.954788 ACAAAAGTGTAAAAGCAAGTTTGAA 57.045 28.000 0.00 0.00 35.72 2.69
1867 1876 9.468532 GTAAAAGCAAGTTTGAATCTGATTTCT 57.531 29.630 4.11 0.00 0.00 2.52
1870 1879 8.627208 AAGCAAGTTTGAATCTGATTTCTAGA 57.373 30.769 4.11 0.00 0.00 2.43
1872 1881 9.240734 AGCAAGTTTGAATCTGATTTCTAGAAT 57.759 29.630 5.89 0.00 0.00 2.40
1891 1900 8.258007 TCTAGAATGAATATGAACCGTGAAAGT 58.742 33.333 0.00 0.00 0.00 2.66
1950 1959 6.613153 AGCTAGAGGTGTCAGAAAAGTTAT 57.387 37.500 0.00 0.00 0.00 1.89
1991 2000 1.167851 GCAGCCAAGTGTTCATAGCA 58.832 50.000 0.00 0.00 0.00 3.49
2156 2166 4.933330 ACAGTGTCGCGATAGTAATTCAT 58.067 39.130 14.06 0.00 39.35 2.57
2158 2168 5.215903 CAGTGTCGCGATAGTAATTCATCT 58.784 41.667 14.06 0.00 39.35 2.90
2198 2208 5.562501 CGTTGATTCACACAATTGGTCATCA 60.563 40.000 10.83 10.93 0.00 3.07
2199 2209 6.392354 GTTGATTCACACAATTGGTCATCAT 58.608 36.000 10.83 0.00 0.00 2.45
2209 2220 2.291209 TGGTCATCATGCTTGGTTGT 57.709 45.000 0.00 0.00 0.00 3.32
2412 2423 1.125093 TCGAAGCTCCCTTCCCAACA 61.125 55.000 0.00 0.00 43.66 3.33
2413 2424 0.035056 CGAAGCTCCCTTCCCAACAT 60.035 55.000 0.00 0.00 43.66 2.71
2459 2470 0.532115 ACTTAAATACGCGACGGGGT 59.468 50.000 15.93 4.73 42.60 4.95
2537 2548 2.444140 CGGATTCGTCCCTCCCCT 60.444 66.667 0.00 0.00 0.00 4.79
2636 2648 5.001232 GCAAAGTCCCTTGTAAGACATACA 58.999 41.667 0.00 0.00 42.75 2.29
2652 2664 5.128827 AGACATACACAATCACCCGATAAGT 59.871 40.000 0.00 0.00 0.00 2.24
2708 2720 0.251916 TGACCAAGATACTTGGCCGG 59.748 55.000 24.58 0.00 43.23 6.13
2723 2735 2.180204 CCGGTTCATGCGGATGTCC 61.180 63.158 16.96 17.57 0.00 4.02
2751 2763 2.240493 GGCTACACGGCTATGTCATT 57.760 50.000 0.00 0.00 33.85 2.57
2759 2771 3.684305 CACGGCTATGTCATTGTCAAGAA 59.316 43.478 0.00 0.00 0.00 2.52
2777 2789 6.923508 GTCAAGAAAAATGGTAAAGTCCCTTG 59.076 38.462 0.00 0.00 0.00 3.61
2866 2878 5.360591 ACCAAGATACTTGACCGATTCATC 58.639 41.667 12.25 0.00 32.84 2.92
2883 2895 1.134580 CATCTGGATGCCTTCGTCACT 60.135 52.381 0.00 0.00 31.39 3.41
2932 2945 8.674607 CAAGACAAATGGTAAAGTCCCTTATAC 58.325 37.037 0.00 0.00 0.00 1.47
2949 2962 5.117135 CCTTATACGACATACGCAATCACTG 59.883 44.000 0.00 0.00 46.94 3.66
2989 3003 3.735746 GCACACTCAAAACTATTTGTGCC 59.264 43.478 12.40 0.00 45.02 5.01
3055 3069 5.522460 TGACAAAGAACGTGTTAAAGGAGAG 59.478 40.000 0.00 0.00 0.00 3.20
3057 3071 6.289064 ACAAAGAACGTGTTAAAGGAGAGAT 58.711 36.000 0.00 0.00 0.00 2.75
3104 3118 1.448985 GCGCACCATGGAAAACTAGA 58.551 50.000 21.47 0.00 0.00 2.43
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
118 119 0.460311 AGAACTCGTAATGGGCTCCG 59.540 55.000 0.00 0.00 0.00 4.63
295 296 2.584608 CGGCTTCCGGTTCATCCT 59.415 61.111 0.00 0.00 44.15 3.24
326 328 1.943340 GGTTCTAGGTTAGCATGCAGC 59.057 52.381 21.98 9.94 46.19 5.25
331 333 4.567747 CCTTTGTGGGTTCTAGGTTAGCAT 60.568 45.833 0.00 0.00 0.00 3.79
390 392 1.852895 CCTTAGCGGATTTCGACTTCG 59.147 52.381 0.00 0.00 42.43 3.79
416 418 6.010219 AGTTGATTGGCAGGTAAGTTGTTAT 58.990 36.000 0.00 0.00 0.00 1.89
425 427 1.211949 GGGCTAGTTGATTGGCAGGTA 59.788 52.381 0.00 0.00 0.00 3.08
578 581 4.737855 TTGCTACTACCACCAAGATCTC 57.262 45.455 0.00 0.00 0.00 2.75
664 667 1.002468 CGTCCCTTTGAAGTGTGCAAG 60.002 52.381 0.00 0.00 0.00 4.01
665 668 1.021202 CGTCCCTTTGAAGTGTGCAA 58.979 50.000 0.00 0.00 0.00 4.08
666 669 0.817634 CCGTCCCTTTGAAGTGTGCA 60.818 55.000 0.00 0.00 0.00 4.57
668 671 0.889186 CCCCGTCCCTTTGAAGTGTG 60.889 60.000 0.00 0.00 0.00 3.82
670 673 0.688487 TACCCCGTCCCTTTGAAGTG 59.312 55.000 0.00 0.00 0.00 3.16
671 674 1.072806 GTTACCCCGTCCCTTTGAAGT 59.927 52.381 0.00 0.00 0.00 3.01
674 677 1.491274 GGGTTACCCCGTCCCTTTGA 61.491 60.000 9.81 0.00 42.41 2.69
675 678 1.001764 GGGTTACCCCGTCCCTTTG 60.002 63.158 9.81 0.00 42.41 2.77
676 679 3.499406 GGGTTACCCCGTCCCTTT 58.501 61.111 9.81 0.00 42.41 3.11
786 792 3.744719 CCGTCGGCGTCTCCAGAA 61.745 66.667 9.28 0.00 36.15 3.02
815 821 6.403746 GGCAGTTAAGCAGAAAAGATAACTCC 60.404 42.308 0.00 0.00 35.29 3.85
837 843 3.080158 TTTCCAGGGTTGGCAGGCA 62.080 57.895 0.00 0.00 44.63 4.75
857 863 0.542232 ACACTACCTCCGGCTGAACT 60.542 55.000 0.00 0.00 0.00 3.01
874 880 1.299648 CTCTTCCGGCCATTGGACA 59.700 57.895 9.76 0.00 34.56 4.02
880 886 4.473520 CGGTGCTCTTCCGGCCAT 62.474 66.667 2.24 0.00 43.68 4.40
905 911 3.936203 GGAGCACCGGACACCACA 61.936 66.667 9.46 0.00 0.00 4.17
1220 1227 3.059884 GAGTTGACTGTTTCATGCTCGA 58.940 45.455 0.00 0.00 32.84 4.04
1314 1321 1.888512 AGGCAGAAATCACATTGCGTT 59.111 42.857 0.00 0.00 37.43 4.84
1334 1341 9.772973 TTCTTCACTTTAACATTTAGAGCACTA 57.227 29.630 0.00 0.00 0.00 2.74
1343 1350 9.883142 TGGTTGAATTTCTTCACTTTAACATTT 57.117 25.926 0.00 0.00 41.05 2.32
1349 1356 6.205784 CGCTTGGTTGAATTTCTTCACTTTA 58.794 36.000 0.00 0.00 41.05 1.85
1428 1435 6.292542 CCATTCATGCGTGTCACTAATTAGAG 60.293 42.308 19.38 11.40 0.00 2.43
1442 1449 5.297547 AGTATCGTTAATCCATTCATGCGT 58.702 37.500 0.00 0.00 0.00 5.24
1462 1469 2.696526 AGACAGGAACAGTGGGAGTA 57.303 50.000 0.00 0.00 0.00 2.59
1464 1471 2.530701 AGTAGACAGGAACAGTGGGAG 58.469 52.381 0.00 0.00 0.00 4.30
1474 1481 3.292492 TTCGCTGGATAGTAGACAGGA 57.708 47.619 6.15 0.79 32.98 3.86
1615 1623 3.596214 AGTAGTGGTATTTCACTTGCGG 58.404 45.455 2.76 0.00 44.74 5.69
1748 1757 4.351054 CCGCCCCAGCCAAACTCT 62.351 66.667 0.00 0.00 34.57 3.24
1789 1798 3.617288 CGTTGAGATCATCTTGGGACACA 60.617 47.826 0.00 0.00 39.29 3.72
1796 1805 5.405797 TCTGTTCTCGTTGAGATCATCTTG 58.594 41.667 7.75 0.00 38.56 3.02
1840 1849 9.248291 GAAATCAGATTCAAACTTGCTTTTACA 57.752 29.630 0.00 0.00 0.00 2.41
1867 1876 7.822334 ACACTTTCACGGTTCATATTCATTCTA 59.178 33.333 0.00 0.00 0.00 2.10
1870 1879 6.349280 CCACACTTTCACGGTTCATATTCATT 60.349 38.462 0.00 0.00 0.00 2.57
1872 1881 4.454161 CCACACTTTCACGGTTCATATTCA 59.546 41.667 0.00 0.00 0.00 2.57
1878 1887 1.098712 GGCCACACTTTCACGGTTCA 61.099 55.000 0.00 0.00 0.00 3.18
1891 1900 3.572642 TCTAAAGGATCGATAGGCCACA 58.427 45.455 5.01 0.00 34.10 4.17
1950 1959 1.985159 ACAAGCCAGTTATCCCTGTGA 59.015 47.619 0.00 0.00 0.00 3.58
1991 2000 5.427036 TCGAAGGATTAAAAAGCAACGTT 57.573 34.783 0.00 0.00 0.00 3.99
2004 2013 1.115467 AGAGCCGACATCGAAGGATT 58.885 50.000 2.09 0.00 43.02 3.01
2156 2166 3.340814 ACGGTTCCTCTCGTACTAAGA 57.659 47.619 0.00 0.00 37.88 2.10
2158 2168 3.411446 TCAACGGTTCCTCTCGTACTAA 58.589 45.455 0.00 0.00 38.78 2.24
2239 2250 2.766263 AGAGGCGTTCAGTCATAATCCA 59.234 45.455 0.00 0.00 0.00 3.41
2412 2423 2.124151 GGATTCAGCCCACCGCAT 60.124 61.111 0.00 0.00 41.38 4.73
2413 2424 2.424842 AAAGGATTCAGCCCACCGCA 62.425 55.000 0.00 0.00 41.38 5.69
2459 2470 2.985896 GCCACTCTGCCACTTACAATA 58.014 47.619 0.00 0.00 0.00 1.90
2537 2548 5.011738 CCTTAGTTGGTGAAGGAGAGTTGTA 59.988 44.000 0.00 0.00 44.36 2.41
2636 2648 2.420129 GCTGGACTTATCGGGTGATTGT 60.420 50.000 0.00 0.00 35.99 2.71
2652 2664 0.179234 TGAGTGTTGTTTCCGCTGGA 59.821 50.000 0.00 0.00 0.00 3.86
2708 2720 0.460284 ACGAGGACATCCGCATGAAC 60.460 55.000 0.00 0.00 42.08 3.18
2723 2735 1.154016 CCGTGTAGCCTGTGACGAG 60.154 63.158 0.00 0.00 33.64 4.18
2745 2757 8.474025 ACTTTACCATTTTTCTTGACAATGACA 58.526 29.630 0.00 0.00 30.66 3.58
2751 2763 6.133356 AGGGACTTTACCATTTTTCTTGACA 58.867 36.000 0.00 0.00 27.25 3.58
2777 2789 8.552083 TTATGGAGTGATTGCATATGTCATAC 57.448 34.615 4.29 3.88 39.47 2.39
2866 2878 0.742281 CCAGTGACGAAGGCATCCAG 60.742 60.000 0.00 0.00 0.00 3.86
2883 2895 1.134818 CATGACTTAGCCGTGTAGCCA 60.135 52.381 0.00 0.00 0.00 4.75
2932 2945 1.921243 TCCAGTGATTGCGTATGTCG 58.079 50.000 0.00 0.00 43.12 4.35
2949 2962 1.146263 CCCACGACTGGCCTTATCC 59.854 63.158 3.32 0.00 36.00 2.59
2966 2979 3.735746 GCACAAATAGTTTTGAGTGTGCC 59.264 43.478 14.06 0.00 44.11 5.01
2989 3003 2.749621 GGCCAAGTATCTTGGTCACTTG 59.250 50.000 22.87 8.80 45.59 3.16
3032 3046 5.751990 TCTCTCCTTTAACACGTTCTTTGTC 59.248 40.000 0.00 0.00 0.00 3.18
3055 3069 2.187946 CCACGACTCCTGCCCATC 59.812 66.667 0.00 0.00 0.00 3.51
3057 3071 3.311110 GTCCACGACTCCTGCCCA 61.311 66.667 0.00 0.00 0.00 5.36
3104 3118 1.134729 AGTCCGTGTACGTGGTTTTGT 60.135 47.619 0.00 0.00 37.74 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.