Multiple sequence alignment - TraesCS7D01G118900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G118900 chr7D 100.000 4132 0 0 1 4132 73742510 73746641 0.000000e+00 7631.0
1 TraesCS7D01G118900 chr7D 85.088 342 45 4 1628 1966 74392420 74392758 1.100000e-90 344.0
2 TraesCS7D01G118900 chr7D 82.132 319 50 4 2999 3315 73370116 73370429 2.450000e-67 267.0
3 TraesCS7D01G118900 chr7D 75.980 204 35 5 130 331 16260539 16260730 4.400000e-15 93.5
4 TraesCS7D01G118900 chr7D 95.918 49 2 0 2906 2954 73745364 73745412 3.420000e-11 80.5
5 TraesCS7D01G118900 chr7D 95.918 49 2 0 2855 2903 73745415 73745463 3.420000e-11 80.5
6 TraesCS7D01G118900 chr7D 97.436 39 1 0 1730 1768 65813746 65813708 2.670000e-07 67.6
7 TraesCS7D01G118900 chr7D 85.000 60 9 0 813 872 73178052 73178111 1.240000e-05 62.1
8 TraesCS7D01G118900 chr7A 93.519 1543 51 12 2107 3622 78219116 78220636 0.000000e+00 2250.0
9 TraesCS7D01G118900 chr7A 95.357 1206 34 5 339 1544 78217034 78218217 0.000000e+00 1897.0
10 TraesCS7D01G118900 chr7A 89.079 1401 72 21 2378 3724 78396757 78398130 0.000000e+00 1664.0
11 TraesCS7D01G118900 chr7A 89.947 756 39 30 1547 2291 78218246 78218975 0.000000e+00 941.0
12 TraesCS7D01G118900 chr7A 86.217 653 66 11 2890 3527 78395471 78396114 0.000000e+00 686.0
13 TraesCS7D01G118900 chr7A 79.125 800 124 31 1000 1765 78414057 78414847 2.850000e-141 512.0
14 TraesCS7D01G118900 chr7A 83.743 529 70 8 998 1519 78388261 78388780 1.730000e-133 486.0
15 TraesCS7D01G118900 chr7A 89.914 347 30 4 1 347 78183478 78183819 3.790000e-120 442.0
16 TraesCS7D01G118900 chr7A 94.203 276 14 1 2578 2851 78394879 78395154 1.780000e-113 420.0
17 TraesCS7D01G118900 chr7A 96.226 212 8 0 3645 3856 78220628 78220839 8.500000e-92 348.0
18 TraesCS7D01G118900 chr7A 86.486 296 33 4 2999 3292 77917132 77917422 6.670000e-83 318.0
19 TraesCS7D01G118900 chr7A 75.528 805 107 49 1370 2134 78389074 78389828 3.100000e-81 313.0
20 TraesCS7D01G118900 chr7A 93.750 192 11 1 3883 4073 78220836 78221027 1.880000e-73 287.0
21 TraesCS7D01G118900 chr7A 79.899 398 25 27 1914 2293 78394182 78394542 1.480000e-59 241.0
22 TraesCS7D01G118900 chr7A 74.922 638 99 37 922 1544 71134793 71134202 6.910000e-58 235.0
23 TraesCS7D01G118900 chr7A 89.820 167 16 1 3549 3714 78396202 78396368 3.240000e-51 213.0
24 TraesCS7D01G118900 chr7A 88.462 182 11 4 2292 2463 78394633 78394814 1.160000e-50 211.0
25 TraesCS7D01G118900 chr7A 80.508 118 12 4 755 871 78413817 78413924 3.420000e-11 80.5
26 TraesCS7D01G118900 chr7B 90.315 1239 56 15 2325 3531 16952505 16953711 0.000000e+00 1565.0
27 TraesCS7D01G118900 chr7B 86.791 1128 80 35 479 1543 16950456 16951577 0.000000e+00 1194.0
28 TraesCS7D01G118900 chr7B 95.913 416 17 0 1555 1970 16951708 16952123 0.000000e+00 675.0
29 TraesCS7D01G118900 chr7B 89.147 516 39 9 2957 3466 17215280 17215784 9.750000e-176 627.0
30 TraesCS7D01G118900 chr7B 78.594 939 147 32 616 1513 29830351 29829426 4.630000e-159 571.0
31 TraesCS7D01G118900 chr7B 83.932 529 77 6 998 1519 17507728 17508255 2.220000e-137 499.0
32 TraesCS7D01G118900 chr7B 84.795 342 46 4 1628 1966 17508476 17508814 5.120000e-89 339.0
33 TraesCS7D01G118900 chr7B 95.652 161 7 0 2025 2185 16952142 16952302 4.100000e-65 259.0
34 TraesCS7D01G118900 chr7B 80.864 324 49 8 2999 3315 16526260 16526577 4.130000e-60 243.0
35 TraesCS7D01G118900 chr7B 91.477 176 10 4 3539 3713 16953766 16953937 1.920000e-58 237.0
36 TraesCS7D01G118900 chr7B 78.238 193 22 11 684 871 17248581 17248758 5.650000e-19 106.0
37 TraesCS7D01G118900 chr7B 97.917 48 1 0 3659 3706 17215785 17215832 2.650000e-12 84.2
38 TraesCS7D01G118900 chr7B 97.674 43 1 0 2 44 562999537 562999495 1.590000e-09 75.0
39 TraesCS7D01G118900 chr2D 82.759 551 76 11 999 1536 33581029 33580485 1.340000e-129 473.0
40 TraesCS7D01G118900 chr2D 81.408 355 39 15 2358 2706 601807625 601807292 8.810000e-67 265.0
41 TraesCS7D01G118900 chr2D 90.909 165 15 0 2025 2189 241364747 241364583 5.380000e-54 222.0
42 TraesCS7D01G118900 chr2B 82.616 558 76 12 999 1542 55227450 55226900 1.340000e-129 473.0
43 TraesCS7D01G118900 chr2B 81.623 604 77 22 957 1536 55699285 55698692 1.740000e-128 470.0
44 TraesCS7D01G118900 chr2B 81.972 355 37 17 2358 2706 675713914 675714247 4.070000e-70 276.0
45 TraesCS7D01G118900 chr2B 77.656 546 55 35 2358 2856 601733750 601734275 1.890000e-68 270.0
46 TraesCS7D01G118900 chr2B 80.292 274 40 9 3030 3298 55224487 55224223 1.170000e-45 195.0
47 TraesCS7D01G118900 chr2A 78.499 786 120 28 764 1526 36392808 36392049 1.740000e-128 470.0
48 TraesCS7D01G118900 chr6B 90.809 272 20 5 2025 2293 471052095 471051826 3.930000e-95 359.0
49 TraesCS7D01G118900 chr6B 86.782 174 15 5 2292 2457 710256864 710256691 1.960000e-43 187.0
50 TraesCS7D01G118900 chr6B 94.175 103 5 1 2025 2126 466652761 466652863 5.530000e-34 156.0
51 TraesCS7D01G118900 chr6B 95.122 41 1 1 2254 2293 466652910 466652950 3.450000e-06 63.9
52 TraesCS7D01G118900 chr4B 88.930 271 16 10 2025 2293 591948082 591947824 5.150000e-84 322.0
53 TraesCS7D01G118900 chr4B 76.166 193 32 9 143 333 657791290 657791470 5.690000e-14 89.8
54 TraesCS7D01G118900 chr6A 80.899 356 41 17 2358 2706 561451851 561452186 5.300000e-64 255.0
55 TraesCS7D01G118900 chr6A 86.857 175 14 6 2292 2457 303373780 303373954 1.960000e-43 187.0
56 TraesCS7D01G118900 chr6A 97.727 44 1 0 2 45 348576250 348576293 4.430000e-10 76.8
57 TraesCS7D01G118900 chr6A 91.071 56 0 4 2 55 3089490 3089542 2.060000e-08 71.3
58 TraesCS7D01G118900 chr4A 80.845 355 41 16 2358 2706 30777984 30778317 1.910000e-63 254.0
59 TraesCS7D01G118900 chr1A 87.356 174 14 5 2292 2457 577675655 577675482 4.220000e-45 193.0
60 TraesCS7D01G118900 chr1A 89.091 55 3 3 2 55 298678209 298678261 9.590000e-07 65.8
61 TraesCS7D01G118900 chr5B 86.782 174 15 5 2292 2457 121734371 121734198 1.960000e-43 187.0
62 TraesCS7D01G118900 chr5B 86.782 174 15 5 2292 2457 509428704 509428877 1.960000e-43 187.0
63 TraesCS7D01G118900 chr3B 82.292 192 31 3 139 329 102974465 102974654 3.310000e-36 163.0
64 TraesCS7D01G118900 chr3B 94.175 103 5 1 2025 2126 771638768 771638666 5.530000e-34 156.0
65 TraesCS7D01G118900 chr3B 95.122 41 1 1 2254 2293 771638619 771638579 3.450000e-06 63.9
66 TraesCS7D01G118900 chr1D 79.909 219 43 1 114 331 400121788 400121570 4.280000e-35 159.0
67 TraesCS7D01G118900 chr1D 82.353 170 27 3 161 329 310147010 310146843 1.200000e-30 145.0
68 TraesCS7D01G118900 chr1D 97.778 45 0 1 2 45 268820496 268820452 4.430000e-10 76.8
69 TraesCS7D01G118900 chr1B 93.204 103 6 1 2025 2126 426952325 426952427 2.570000e-32 150.0
70 TraesCS7D01G118900 chr1B 91.860 86 6 1 2042 2126 125286618 125286533 7.260000e-23 119.0
71 TraesCS7D01G118900 chr1B 95.122 41 1 1 2254 2293 44352863 44352903 3.450000e-06 63.9
72 TraesCS7D01G118900 chr1B 95.122 41 1 1 2254 2293 426952474 426952514 3.450000e-06 63.9
73 TraesCS7D01G118900 chr4D 80.226 177 30 5 164 337 496090291 496090465 1.210000e-25 128.0
74 TraesCS7D01G118900 chr3A 76.966 178 38 3 156 331 728224289 728224465 9.450000e-17 99.0
75 TraesCS7D01G118900 chr3A 90.909 55 2 3 2 55 98474455 98474403 2.060000e-08 71.3
76 TraesCS7D01G118900 chr3A 97.561 41 0 1 2254 2293 7093152 7093112 7.410000e-08 69.4
77 TraesCS7D01G118900 chr5D 76.398 161 35 3 173 331 54095455 54095296 2.650000e-12 84.2
78 TraesCS7D01G118900 chr5D 97.674 43 1 0 2 44 205549021 205548979 1.590000e-09 75.0
79 TraesCS7D01G118900 chr5A 97.778 45 0 1 2 45 304679988 304680032 4.430000e-10 76.8
80 TraesCS7D01G118900 chr3D 83.077 65 11 0 243 307 550245087 550245023 4.460000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G118900 chr7D 73742510 73746641 4131 False 2597.333333 7631 97.278667 1 4132 3 chr7D.!!$F5 4131
1 TraesCS7D01G118900 chr7A 78217034 78221027 3993 False 1144.600000 2250 93.759800 339 4073 5 chr7A.!!$F3 3734
2 TraesCS7D01G118900 chr7A 78394182 78398130 3948 False 572.500000 1664 87.946667 1914 3724 6 chr7A.!!$F5 1810
3 TraesCS7D01G118900 chr7A 78388261 78389828 1567 False 399.500000 486 79.635500 998 2134 2 chr7A.!!$F4 1136
4 TraesCS7D01G118900 chr7A 78413817 78414847 1030 False 296.250000 512 79.816500 755 1765 2 chr7A.!!$F6 1010
5 TraesCS7D01G118900 chr7A 71134202 71134793 591 True 235.000000 235 74.922000 922 1544 1 chr7A.!!$R1 622
6 TraesCS7D01G118900 chr7B 16950456 16953937 3481 False 786.000000 1565 92.029600 479 3713 5 chr7B.!!$F3 3234
7 TraesCS7D01G118900 chr7B 29829426 29830351 925 True 571.000000 571 78.594000 616 1513 1 chr7B.!!$R1 897
8 TraesCS7D01G118900 chr7B 17507728 17508814 1086 False 419.000000 499 84.363500 998 1966 2 chr7B.!!$F5 968
9 TraesCS7D01G118900 chr7B 17215280 17215832 552 False 355.600000 627 93.532000 2957 3706 2 chr7B.!!$F4 749
10 TraesCS7D01G118900 chr2D 33580485 33581029 544 True 473.000000 473 82.759000 999 1536 1 chr2D.!!$R1 537
11 TraesCS7D01G118900 chr2B 55698692 55699285 593 True 470.000000 470 81.623000 957 1536 1 chr2B.!!$R1 579
12 TraesCS7D01G118900 chr2B 55224223 55227450 3227 True 334.000000 473 81.454000 999 3298 2 chr2B.!!$R2 2299
13 TraesCS7D01G118900 chr2B 601733750 601734275 525 False 270.000000 270 77.656000 2358 2856 1 chr2B.!!$F1 498
14 TraesCS7D01G118900 chr2A 36392049 36392808 759 True 470.000000 470 78.499000 764 1526 1 chr2A.!!$R1 762


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
45 46 0.039074 GGAGACGTATCAGATGCCGG 60.039 60.0 12.92 0.00 0.00 6.13 F
132 133 0.040336 CGTATGGGACCTCATCGTCG 60.040 60.0 0.00 0.00 33.30 5.12 F
209 210 0.104855 TATGATGAGTGCCGGTCAGC 59.895 55.0 1.90 1.99 0.00 4.26 F
1544 2173 0.107703 TCGAATTGCTTCCAGCGGAT 60.108 50.0 0.00 0.00 46.26 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2017 2943 0.704076 AGCACCCCCAATAGCAAAGA 59.296 50.000 0.0 0.0 0.00 2.52 R
2023 2949 2.107204 AGCAGATTAGCACCCCCAATAG 59.893 50.000 0.0 0.0 36.85 1.73 R
2186 4460 3.372566 CCCCAATAACCATCTAGCCACAA 60.373 47.826 0.0 0.0 0.00 3.33 R
3195 7849 1.560860 GCGTCCAGTTCTGCTGTCAC 61.561 60.000 0.0 0.0 43.55 3.67 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 2.120232 CGTTGGAGACGTATCAGATGC 58.880 52.381 12.92 0.00 46.49 3.91
43 44 2.474816 GTTGGAGACGTATCAGATGCC 58.525 52.381 12.92 0.00 0.00 4.40
44 45 0.668535 TGGAGACGTATCAGATGCCG 59.331 55.000 12.92 0.00 0.00 5.69
45 46 0.039074 GGAGACGTATCAGATGCCGG 60.039 60.000 12.92 0.00 0.00 6.13
46 47 0.664767 GAGACGTATCAGATGCCGGC 60.665 60.000 22.73 22.73 0.00 6.13
47 48 1.664965 GACGTATCAGATGCCGGCC 60.665 63.158 26.77 9.73 0.00 6.13
48 49 2.734723 CGTATCAGATGCCGGCCG 60.735 66.667 26.77 21.04 0.00 6.13
49 50 2.357517 GTATCAGATGCCGGCCGG 60.358 66.667 40.26 40.26 38.57 6.13
60 61 2.613390 CCGGCCGGCTTAAATAGAC 58.387 57.895 34.96 4.75 0.00 2.59
69 70 4.274421 GGCTTAAATAGACGAGTTTGGC 57.726 45.455 0.00 0.00 0.00 4.52
70 71 3.939592 GGCTTAAATAGACGAGTTTGGCT 59.060 43.478 0.00 0.00 0.00 4.75
71 72 4.395231 GGCTTAAATAGACGAGTTTGGCTT 59.605 41.667 0.00 0.00 0.00 4.35
72 73 5.447413 GGCTTAAATAGACGAGTTTGGCTTC 60.447 44.000 0.00 0.00 0.00 3.86
73 74 5.447413 GCTTAAATAGACGAGTTTGGCTTCC 60.447 44.000 0.00 0.00 0.00 3.46
74 75 2.295253 ATAGACGAGTTTGGCTTCCG 57.705 50.000 0.00 0.00 0.00 4.30
75 76 0.245539 TAGACGAGTTTGGCTTCCGG 59.754 55.000 0.00 0.00 0.00 5.14
76 77 2.668550 ACGAGTTTGGCTTCCGGC 60.669 61.111 0.00 0.00 40.90 6.13
77 78 3.788766 CGAGTTTGGCTTCCGGCG 61.789 66.667 0.00 0.00 42.94 6.46
78 79 3.431725 GAGTTTGGCTTCCGGCGG 61.432 66.667 22.51 22.51 42.94 6.13
102 103 3.119096 GGAGCGGCGTCTGGTTTC 61.119 66.667 9.37 0.00 0.00 2.78
103 104 3.119096 GAGCGGCGTCTGGTTTCC 61.119 66.667 9.37 0.00 0.00 3.13
110 111 2.434359 GTCTGGTTTCCGGGCGAG 60.434 66.667 0.00 0.00 0.00 5.03
111 112 4.388499 TCTGGTTTCCGGGCGAGC 62.388 66.667 0.00 0.00 0.00 5.03
130 131 2.426651 CCGTATGGGACCTCATCGT 58.573 57.895 0.00 0.00 38.47 3.73
131 132 0.314302 CCGTATGGGACCTCATCGTC 59.686 60.000 0.00 0.00 38.47 4.20
132 133 0.040336 CGTATGGGACCTCATCGTCG 60.040 60.000 0.00 0.00 33.30 5.12
133 134 0.314302 GTATGGGACCTCATCGTCGG 59.686 60.000 0.00 0.00 33.30 4.79
134 135 0.106369 TATGGGACCTCATCGTCGGT 60.106 55.000 0.00 0.00 35.90 4.69
137 138 3.921521 GACCTCATCGTCGGTCCT 58.078 61.111 0.00 0.00 43.05 3.85
138 139 3.091318 GACCTCATCGTCGGTCCTA 57.909 57.895 0.00 0.00 43.05 2.94
139 140 1.606903 GACCTCATCGTCGGTCCTAT 58.393 55.000 0.00 0.00 43.05 2.57
140 141 1.267261 GACCTCATCGTCGGTCCTATG 59.733 57.143 0.00 0.00 43.05 2.23
141 142 1.319541 CCTCATCGTCGGTCCTATGT 58.680 55.000 0.00 0.00 0.00 2.29
142 143 1.001268 CCTCATCGTCGGTCCTATGTG 60.001 57.143 0.00 0.00 0.00 3.21
143 144 1.001268 CTCATCGTCGGTCCTATGTGG 60.001 57.143 0.00 0.00 37.10 4.17
144 145 0.597637 CATCGTCGGTCCTATGTGGC 60.598 60.000 0.00 0.00 35.26 5.01
145 146 2.071844 ATCGTCGGTCCTATGTGGCG 62.072 60.000 0.00 0.00 35.26 5.69
146 147 2.767445 CGTCGGTCCTATGTGGCGA 61.767 63.158 0.00 0.00 35.26 5.54
147 148 1.514087 GTCGGTCCTATGTGGCGAA 59.486 57.895 0.00 0.00 33.38 4.70
148 149 0.804933 GTCGGTCCTATGTGGCGAAC 60.805 60.000 0.00 0.00 33.38 3.95
149 150 1.876714 CGGTCCTATGTGGCGAACG 60.877 63.158 0.00 0.00 35.26 3.95
150 151 2.171725 GGTCCTATGTGGCGAACGC 61.172 63.158 10.81 10.81 41.06 4.84
168 169 2.923035 CCCCGGACGCCTCCATAT 60.923 66.667 0.73 0.00 36.12 1.78
169 170 2.657237 CCCGGACGCCTCCATATC 59.343 66.667 0.73 0.00 36.12 1.63
170 171 2.657237 CCGGACGCCTCCATATCC 59.343 66.667 0.00 0.00 36.12 2.59
172 173 2.048127 GGACGCCTCCATATCCGC 60.048 66.667 0.00 0.00 36.42 5.54
173 174 2.048127 GACGCCTCCATATCCGCC 60.048 66.667 0.00 0.00 0.00 6.13
174 175 3.591254 GACGCCTCCATATCCGCCC 62.591 68.421 0.00 0.00 0.00 6.13
175 176 3.314331 CGCCTCCATATCCGCCCT 61.314 66.667 0.00 0.00 0.00 5.19
176 177 1.982395 CGCCTCCATATCCGCCCTA 60.982 63.158 0.00 0.00 0.00 3.53
177 178 1.330655 CGCCTCCATATCCGCCCTAT 61.331 60.000 0.00 0.00 0.00 2.57
178 179 1.789523 GCCTCCATATCCGCCCTATA 58.210 55.000 0.00 0.00 0.00 1.31
179 180 2.330216 GCCTCCATATCCGCCCTATAT 58.670 52.381 0.00 0.00 0.00 0.86
180 181 2.706190 GCCTCCATATCCGCCCTATATT 59.294 50.000 0.00 0.00 0.00 1.28
181 182 3.136626 GCCTCCATATCCGCCCTATATTT 59.863 47.826 0.00 0.00 0.00 1.40
182 183 4.708177 CCTCCATATCCGCCCTATATTTG 58.292 47.826 0.00 0.00 0.00 2.32
183 184 4.444876 CCTCCATATCCGCCCTATATTTGG 60.445 50.000 0.00 0.00 0.00 3.28
194 195 4.858850 CCCTATATTTGGGCTGCATATGA 58.141 43.478 6.97 0.00 37.99 2.15
195 196 5.452255 CCCTATATTTGGGCTGCATATGAT 58.548 41.667 6.97 0.00 37.99 2.45
196 197 5.301045 CCCTATATTTGGGCTGCATATGATG 59.699 44.000 6.97 0.00 37.99 3.07
197 198 6.124340 CCTATATTTGGGCTGCATATGATGA 58.876 40.000 6.97 0.00 0.00 2.92
198 199 6.262496 CCTATATTTGGGCTGCATATGATGAG 59.738 42.308 6.97 0.00 0.00 2.90
199 200 3.301794 TTTGGGCTGCATATGATGAGT 57.698 42.857 6.97 0.00 0.00 3.41
200 201 2.265589 TGGGCTGCATATGATGAGTG 57.734 50.000 6.97 0.00 0.00 3.51
201 202 0.879765 GGGCTGCATATGATGAGTGC 59.120 55.000 6.97 0.65 39.26 4.40
202 203 0.879765 GGCTGCATATGATGAGTGCC 59.120 55.000 6.97 6.16 38.06 5.01
203 204 0.516001 GCTGCATATGATGAGTGCCG 59.484 55.000 6.97 0.00 38.06 5.69
204 205 1.154197 CTGCATATGATGAGTGCCGG 58.846 55.000 6.97 0.00 38.06 6.13
205 206 0.469494 TGCATATGATGAGTGCCGGT 59.531 50.000 6.97 0.00 38.06 5.28
206 207 1.151668 GCATATGATGAGTGCCGGTC 58.848 55.000 6.97 0.00 32.88 4.79
207 208 1.541015 GCATATGATGAGTGCCGGTCA 60.541 52.381 6.97 0.00 32.88 4.02
208 209 2.410939 CATATGATGAGTGCCGGTCAG 58.589 52.381 1.90 0.00 0.00 3.51
209 210 0.104855 TATGATGAGTGCCGGTCAGC 59.895 55.000 1.90 1.99 0.00 4.26
210 211 2.512515 GATGAGTGCCGGTCAGCC 60.513 66.667 1.90 0.00 0.00 4.85
211 212 4.101448 ATGAGTGCCGGTCAGCCC 62.101 66.667 1.90 0.00 0.00 5.19
238 239 8.577048 AGCTTTTAAGGTCTATTTAAAGGACC 57.423 34.615 24.20 24.20 46.94 4.46
245 246 5.377478 GGTCTATTTAAAGGACCATCTGGG 58.623 45.833 25.55 0.00 46.14 4.45
273 274 7.596749 AAAAATTATGACTAGTCAGTGACCG 57.403 36.000 28.29 13.36 43.61 4.79
274 275 4.920640 ATTATGACTAGTCAGTGACCGG 57.079 45.455 28.29 14.42 43.61 5.28
275 276 1.475403 ATGACTAGTCAGTGACCGGG 58.525 55.000 28.29 12.05 43.61 5.73
276 277 1.248785 TGACTAGTCAGTGACCGGGC 61.249 60.000 21.74 14.76 34.21 6.13
277 278 1.228769 ACTAGTCAGTGACCGGGCA 60.229 57.895 19.71 5.41 32.25 5.36
278 279 1.251527 ACTAGTCAGTGACCGGGCAG 61.252 60.000 12.52 0.00 32.25 4.85
279 280 2.564553 CTAGTCAGTGACCGGGCAGC 62.565 65.000 12.52 5.88 32.18 5.25
296 297 4.280494 CCCGCCCGGACGTATGAG 62.280 72.222 9.94 0.00 37.50 2.90
297 298 3.214123 CCGCCCGGACGTATGAGA 61.214 66.667 9.94 0.00 37.50 3.27
298 299 2.025727 CGCCCGGACGTATGAGAC 59.974 66.667 0.73 0.00 0.00 3.36
310 311 1.517276 GTATGAGACGGATTTGACGCG 59.483 52.381 3.53 3.53 34.00 6.01
311 312 1.421410 ATGAGACGGATTTGACGCGC 61.421 55.000 5.73 0.00 34.00 6.86
312 313 2.799540 GAGACGGATTTGACGCGCC 61.800 63.158 5.73 0.00 34.00 6.53
313 314 3.861263 GACGGATTTGACGCGCCC 61.861 66.667 5.73 0.00 34.00 6.13
314 315 4.388499 ACGGATTTGACGCGCCCT 62.388 61.111 5.73 0.00 34.00 5.19
315 316 3.864686 CGGATTTGACGCGCCCTG 61.865 66.667 5.73 0.00 0.00 4.45
316 317 4.179579 GGATTTGACGCGCCCTGC 62.180 66.667 5.73 0.00 41.47 4.85
317 318 3.127533 GATTTGACGCGCCCTGCT 61.128 61.111 5.73 0.00 43.27 4.24
318 319 3.386867 GATTTGACGCGCCCTGCTG 62.387 63.158 5.73 0.00 43.27 4.41
319 320 4.927782 TTTGACGCGCCCTGCTGT 62.928 61.111 5.73 0.00 43.27 4.40
320 321 2.796483 ATTTGACGCGCCCTGCTGTA 62.796 55.000 5.73 0.00 43.27 2.74
321 322 3.932580 TTGACGCGCCCTGCTGTAG 62.933 63.158 5.73 0.00 43.27 2.74
322 323 4.129737 GACGCGCCCTGCTGTAGA 62.130 66.667 5.73 0.00 43.27 2.59
323 324 3.432051 GACGCGCCCTGCTGTAGAT 62.432 63.158 5.73 0.00 43.27 1.98
324 325 2.963854 CGCGCCCTGCTGTAGATG 60.964 66.667 0.00 0.00 43.27 2.90
325 326 3.275338 GCGCCCTGCTGTAGATGC 61.275 66.667 0.00 0.00 41.73 3.91
326 327 2.503061 CGCCCTGCTGTAGATGCT 59.497 61.111 0.00 0.00 0.00 3.79
327 328 1.593750 CGCCCTGCTGTAGATGCTC 60.594 63.158 0.00 0.00 0.00 4.26
328 329 1.828768 GCCCTGCTGTAGATGCTCT 59.171 57.895 0.00 0.00 0.00 4.09
329 330 1.043816 GCCCTGCTGTAGATGCTCTA 58.956 55.000 0.00 0.00 0.00 2.43
330 331 1.414181 GCCCTGCTGTAGATGCTCTAA 59.586 52.381 0.00 0.00 29.58 2.10
331 332 2.804933 GCCCTGCTGTAGATGCTCTAAC 60.805 54.545 0.00 0.00 29.58 2.34
332 333 2.697751 CCCTGCTGTAGATGCTCTAACT 59.302 50.000 0.00 0.00 29.58 2.24
333 334 3.243704 CCCTGCTGTAGATGCTCTAACTC 60.244 52.174 0.00 0.00 29.58 3.01
334 335 3.243704 CCTGCTGTAGATGCTCTAACTCC 60.244 52.174 0.00 0.00 29.58 3.85
335 336 3.365472 TGCTGTAGATGCTCTAACTCCA 58.635 45.455 0.00 0.00 29.58 3.86
336 337 3.131223 TGCTGTAGATGCTCTAACTCCAC 59.869 47.826 0.00 0.00 29.58 4.02
337 338 3.131223 GCTGTAGATGCTCTAACTCCACA 59.869 47.826 0.00 0.00 29.58 4.17
338 339 4.202202 GCTGTAGATGCTCTAACTCCACAT 60.202 45.833 0.00 0.00 29.58 3.21
339 340 5.010112 GCTGTAGATGCTCTAACTCCACATA 59.990 44.000 0.00 0.00 29.58 2.29
340 341 6.461648 GCTGTAGATGCTCTAACTCCACATAA 60.462 42.308 0.00 0.00 29.58 1.90
367 368 6.412653 ACAATTACAAAACGATGAAACGACAC 59.587 34.615 0.00 0.00 37.03 3.67
368 369 5.466432 TTACAAAACGATGAAACGACACA 57.534 34.783 0.00 0.00 37.03 3.72
369 370 4.545823 ACAAAACGATGAAACGACACAT 57.454 36.364 0.00 0.00 37.03 3.21
370 371 4.278858 ACAAAACGATGAAACGACACATG 58.721 39.130 0.00 0.00 37.03 3.21
371 372 3.536158 AAACGATGAAACGACACATGG 57.464 42.857 0.00 0.00 37.03 3.66
372 373 1.438651 ACGATGAAACGACACATGGG 58.561 50.000 0.00 0.00 37.03 4.00
373 374 1.001520 ACGATGAAACGACACATGGGA 59.998 47.619 0.00 0.00 37.03 4.37
374 375 2.073056 CGATGAAACGACACATGGGAA 58.927 47.619 0.00 0.00 35.09 3.97
375 376 2.482336 CGATGAAACGACACATGGGAAA 59.518 45.455 0.00 0.00 35.09 3.13
376 377 3.126858 CGATGAAACGACACATGGGAAAT 59.873 43.478 0.00 0.00 35.09 2.17
383 384 3.753272 ACGACACATGGGAAATTTGAGAG 59.247 43.478 0.00 0.00 0.00 3.20
394 395 6.323482 TGGGAAATTTGAGAGTTGACATTCAA 59.677 34.615 0.00 0.00 33.32 2.69
906 977 2.283676 TTTCCTCCTCCTCGCCGT 60.284 61.111 0.00 0.00 0.00 5.68
919 997 1.451387 CGCCGTAGCCCCAAGAAAT 60.451 57.895 0.00 0.00 34.57 2.17
1544 2173 0.107703 TCGAATTGCTTCCAGCGGAT 60.108 50.000 0.00 0.00 46.26 4.18
1545 2174 1.138069 TCGAATTGCTTCCAGCGGATA 59.862 47.619 0.00 0.00 46.26 2.59
1546 2175 1.528586 CGAATTGCTTCCAGCGGATAG 59.471 52.381 0.00 1.72 46.26 2.08
1547 2176 1.876156 GAATTGCTTCCAGCGGATAGG 59.124 52.381 0.00 0.00 46.26 2.57
1550 2179 1.271840 TGCTTCCAGCGGATAGGGTT 61.272 55.000 0.00 0.00 46.26 4.11
1673 2528 1.480545 CAGATCCGGTACATGGTGTCA 59.519 52.381 0.00 0.00 0.00 3.58
1889 2753 2.101770 GGCGACCTCTTACCGACG 59.898 66.667 0.00 0.00 0.00 5.12
1970 2896 7.446625 CCCAACTTCTTAATGATCTCCTAATGG 59.553 40.741 0.00 0.00 0.00 3.16
1974 2900 8.371699 ACTTCTTAATGATCTCCTAATGGTAGC 58.628 37.037 0.00 0.00 34.23 3.58
1975 2901 7.246171 TCTTAATGATCTCCTAATGGTAGCC 57.754 40.000 0.00 0.00 34.23 3.93
1976 2902 7.019388 TCTTAATGATCTCCTAATGGTAGCCT 58.981 38.462 0.00 0.00 34.23 4.58
1977 2903 7.514127 TCTTAATGATCTCCTAATGGTAGCCTT 59.486 37.037 0.00 0.00 34.23 4.35
1979 2905 4.556697 TGATCTCCTAATGGTAGCCTTGA 58.443 43.478 0.00 0.00 34.23 3.02
1983 2909 4.968719 TCTCCTAATGGTAGCCTTGATTGA 59.031 41.667 0.00 0.00 34.23 2.57
1988 2914 7.068593 TCCTAATGGTAGCCTTGATTGAATTTG 59.931 37.037 0.00 0.00 34.23 2.32
1989 2915 6.610075 AATGGTAGCCTTGATTGAATTTGT 57.390 33.333 0.00 0.00 0.00 2.83
1990 2916 6.610075 ATGGTAGCCTTGATTGAATTTGTT 57.390 33.333 0.00 0.00 0.00 2.83
1991 2917 7.716799 ATGGTAGCCTTGATTGAATTTGTTA 57.283 32.000 0.00 0.00 0.00 2.41
1992 2918 7.716799 TGGTAGCCTTGATTGAATTTGTTAT 57.283 32.000 0.00 0.00 0.00 1.89
1993 2919 7.546358 TGGTAGCCTTGATTGAATTTGTTATG 58.454 34.615 0.00 0.00 0.00 1.90
1994 2920 6.980397 GGTAGCCTTGATTGAATTTGTTATGG 59.020 38.462 0.00 0.00 0.00 2.74
1995 2921 6.855763 AGCCTTGATTGAATTTGTTATGGA 57.144 33.333 0.00 0.00 0.00 3.41
1996 2922 6.633856 AGCCTTGATTGAATTTGTTATGGAC 58.366 36.000 0.00 0.00 0.00 4.02
1997 2923 6.438425 AGCCTTGATTGAATTTGTTATGGACT 59.562 34.615 0.00 0.00 0.00 3.85
1998 2924 7.615365 AGCCTTGATTGAATTTGTTATGGACTA 59.385 33.333 0.00 0.00 0.00 2.59
1999 2925 8.416329 GCCTTGATTGAATTTGTTATGGACTAT 58.584 33.333 0.00 0.00 0.00 2.12
2003 2929 9.585099 TGATTGAATTTGTTATGGACTATTTGC 57.415 29.630 0.00 0.00 0.00 3.68
2004 2930 9.807649 GATTGAATTTGTTATGGACTATTTGCT 57.192 29.630 0.00 0.00 0.00 3.91
2005 2931 8.984891 TTGAATTTGTTATGGACTATTTGCTG 57.015 30.769 0.00 0.00 0.00 4.41
2006 2932 8.121305 TGAATTTGTTATGGACTATTTGCTGT 57.879 30.769 0.00 0.00 0.00 4.40
2007 2933 9.237187 TGAATTTGTTATGGACTATTTGCTGTA 57.763 29.630 0.00 0.00 0.00 2.74
2010 2936 7.566760 TTGTTATGGACTATTTGCTGTATGG 57.433 36.000 0.00 0.00 0.00 2.74
2011 2937 5.530915 TGTTATGGACTATTTGCTGTATGGC 59.469 40.000 0.00 0.00 0.00 4.40
2012 2938 2.930950 TGGACTATTTGCTGTATGGCC 58.069 47.619 0.00 0.00 0.00 5.36
2013 2939 2.240921 TGGACTATTTGCTGTATGGCCA 59.759 45.455 8.56 8.56 0.00 5.36
2014 2940 3.117550 TGGACTATTTGCTGTATGGCCAT 60.118 43.478 24.45 24.45 0.00 4.40
2015 2941 3.254166 GGACTATTTGCTGTATGGCCATG 59.746 47.826 29.04 12.96 0.00 3.66
2016 2942 4.136796 GACTATTTGCTGTATGGCCATGA 58.863 43.478 29.04 13.54 0.00 3.07
2017 2943 4.733165 ACTATTTGCTGTATGGCCATGAT 58.267 39.130 29.04 5.35 0.00 2.45
2018 2944 4.763793 ACTATTTGCTGTATGGCCATGATC 59.236 41.667 29.04 17.72 0.00 2.92
2019 2945 3.301794 TTTGCTGTATGGCCATGATCT 57.698 42.857 29.04 4.46 0.00 2.75
2020 2946 3.301794 TTGCTGTATGGCCATGATCTT 57.698 42.857 29.04 3.59 0.00 2.40
2021 2947 3.301794 TGCTGTATGGCCATGATCTTT 57.698 42.857 29.04 2.72 0.00 2.52
2022 2948 2.953648 TGCTGTATGGCCATGATCTTTG 59.046 45.455 29.04 11.58 0.00 2.77
2023 2949 2.288030 GCTGTATGGCCATGATCTTTGC 60.288 50.000 29.04 16.99 0.00 3.68
2217 4492 1.488812 TGGTTATTGGGGGACAGATCG 59.511 52.381 0.00 0.00 0.00 3.69
2290 4658 7.666623 TCATACTACTCACAATCAACAGTCAA 58.333 34.615 0.00 0.00 0.00 3.18
2344 4750 6.017275 AGACAGAGTTATCCGTATTTAGACCG 60.017 42.308 0.00 0.00 0.00 4.79
2445 6887 8.863049 CACTATTATTTTCTGGTTTTGCACATC 58.137 33.333 0.00 0.00 0.00 3.06
2739 7209 9.794653 GAACTCGTCTGAAAATTAAAAGTAGTC 57.205 33.333 0.00 0.00 0.00 2.59
2851 7388 9.552114 CACATTTCTGTTCTTGATTCAGATAAC 57.448 33.333 0.00 0.00 37.91 1.89
2856 7393 6.815641 TCTGTTCTTGATTCAGATAACTCAGC 59.184 38.462 8.42 0.00 34.00 4.26
2857 7394 6.466812 TGTTCTTGATTCAGATAACTCAGCA 58.533 36.000 8.42 0.00 0.00 4.41
2860 7397 6.939622 TCTTGATTCAGATAACTCAGCAGAA 58.060 36.000 0.00 0.00 0.00 3.02
2861 7398 7.389232 TCTTGATTCAGATAACTCAGCAGAAA 58.611 34.615 0.00 0.00 0.00 2.52
2862 7399 8.045507 TCTTGATTCAGATAACTCAGCAGAAAT 58.954 33.333 0.00 0.00 0.00 2.17
2863 7400 8.571461 TTGATTCAGATAACTCAGCAGAAATT 57.429 30.769 0.00 0.00 0.00 1.82
2864 7401 9.671279 TTGATTCAGATAACTCAGCAGAAATTA 57.329 29.630 0.00 0.00 0.00 1.40
2865 7402 9.842775 TGATTCAGATAACTCAGCAGAAATTAT 57.157 29.630 0.00 0.00 0.00 1.28
2867 7404 8.442632 TTCAGATAACTCAGCAGAAATTATGG 57.557 34.615 1.40 0.00 0.00 2.74
2868 7405 7.795047 TCAGATAACTCAGCAGAAATTATGGA 58.205 34.615 1.40 0.00 0.00 3.41
2869 7406 8.267183 TCAGATAACTCAGCAGAAATTATGGAA 58.733 33.333 1.40 0.00 0.00 3.53
2870 7407 8.341173 CAGATAACTCAGCAGAAATTATGGAAC 58.659 37.037 1.40 0.00 0.00 3.62
2871 7408 5.904362 AACTCAGCAGAAATTATGGAACC 57.096 39.130 0.00 0.00 0.00 3.62
2872 7409 5.184892 ACTCAGCAGAAATTATGGAACCT 57.815 39.130 0.00 0.00 0.00 3.50
2873 7410 6.313519 ACTCAGCAGAAATTATGGAACCTA 57.686 37.500 0.00 0.00 0.00 3.08
2874 7411 6.721318 ACTCAGCAGAAATTATGGAACCTAA 58.279 36.000 0.00 0.00 0.00 2.69
2875 7412 7.175104 ACTCAGCAGAAATTATGGAACCTAAA 58.825 34.615 0.00 0.00 0.00 1.85
2876 7413 7.669722 ACTCAGCAGAAATTATGGAACCTAAAA 59.330 33.333 0.00 0.00 0.00 1.52
2877 7414 8.055279 TCAGCAGAAATTATGGAACCTAAAAG 57.945 34.615 0.00 0.00 0.00 2.27
2878 7415 7.122650 TCAGCAGAAATTATGGAACCTAAAAGG 59.877 37.037 0.00 0.00 42.49 3.11
2879 7416 6.042777 GCAGAAATTATGGAACCTAAAAGGC 58.957 40.000 0.00 0.00 39.63 4.35
2880 7417 6.127338 GCAGAAATTATGGAACCTAAAAGGCT 60.127 38.462 0.00 0.00 39.63 4.58
2881 7418 7.068226 GCAGAAATTATGGAACCTAAAAGGCTA 59.932 37.037 0.00 0.00 39.63 3.93
2882 7419 8.624776 CAGAAATTATGGAACCTAAAAGGCTAG 58.375 37.037 0.00 0.00 39.63 3.42
2883 7420 8.336987 AGAAATTATGGAACCTAAAAGGCTAGT 58.663 33.333 0.00 0.00 39.63 2.57
2890 7427 7.463431 TGGAACCTAAAAGGCTAGTCATTTTA 58.537 34.615 2.51 9.05 39.63 1.52
2941 7478 7.463431 TGGAACCTAAAAGGCTAGTCATTTTA 58.537 34.615 2.51 9.05 39.63 1.52
3195 7849 2.709125 TTTCGCCACCTCGGACACAG 62.709 60.000 0.00 0.00 36.56 3.66
3498 8164 4.941263 AGTGAGCTGCCGATATTGTTTTTA 59.059 37.500 0.00 0.00 0.00 1.52
3570 8284 4.395231 AGTTTCTTTTAGGCTACGCATTCC 59.605 41.667 0.00 0.00 0.00 3.01
3657 8372 2.825086 AGTGTCTCGTGTTTTGTTGC 57.175 45.000 0.00 0.00 0.00 4.17
3770 8487 2.223745 TGTTCTCCCTTTTTACGTGGC 58.776 47.619 0.00 0.00 0.00 5.01
3806 8523 4.095334 TCGAGTGCAGTAGTATTTCGCTTA 59.905 41.667 0.00 0.00 0.00 3.09
3807 8524 4.204573 CGAGTGCAGTAGTATTTCGCTTAC 59.795 45.833 0.00 0.00 0.00 2.34
3824 8541 6.369005 TCGCTTACTGATCTATAAACGCTAC 58.631 40.000 0.00 0.00 0.00 3.58
3839 8556 8.997621 ATAAACGCTACATTTCTTTACAGAGA 57.002 30.769 0.00 0.00 0.00 3.10
3855 8572 5.574891 ACAGAGAGAGTACATGCTAACTG 57.425 43.478 0.00 0.00 0.00 3.16
3856 8573 5.257262 ACAGAGAGAGTACATGCTAACTGA 58.743 41.667 15.65 0.00 0.00 3.41
3857 8574 5.712446 ACAGAGAGAGTACATGCTAACTGAA 59.288 40.000 15.65 0.00 0.00 3.02
3858 8575 6.379703 ACAGAGAGAGTACATGCTAACTGAAT 59.620 38.462 15.65 0.00 0.00 2.57
3859 8576 7.093552 ACAGAGAGAGTACATGCTAACTGAATT 60.094 37.037 15.65 0.00 0.00 2.17
3860 8577 7.434897 CAGAGAGAGTACATGCTAACTGAATTC 59.565 40.741 0.00 0.00 0.00 2.17
3861 8578 6.269315 AGAGAGTACATGCTAACTGAATTCG 58.731 40.000 0.04 0.00 0.00 3.34
3862 8579 6.095580 AGAGAGTACATGCTAACTGAATTCGA 59.904 38.462 0.04 0.00 0.00 3.71
3863 8580 6.269315 AGAGTACATGCTAACTGAATTCGAG 58.731 40.000 0.04 2.47 0.00 4.04
3864 8581 5.967088 AGTACATGCTAACTGAATTCGAGT 58.033 37.500 0.04 3.09 0.00 4.18
3865 8582 7.067129 AGAGTACATGCTAACTGAATTCGAGTA 59.933 37.037 9.88 1.72 0.00 2.59
3866 8583 7.197017 AGTACATGCTAACTGAATTCGAGTAG 58.803 38.462 9.88 7.53 0.00 2.57
3867 8584 6.208988 ACATGCTAACTGAATTCGAGTAGA 57.791 37.500 9.88 3.24 0.00 2.59
3868 8585 6.037098 ACATGCTAACTGAATTCGAGTAGAC 58.963 40.000 9.88 4.93 0.00 2.59
3869 8586 4.659088 TGCTAACTGAATTCGAGTAGACG 58.341 43.478 9.88 0.00 0.00 4.18
3870 8587 4.155462 TGCTAACTGAATTCGAGTAGACGT 59.845 41.667 9.88 0.00 34.70 4.34
3871 8588 4.496183 GCTAACTGAATTCGAGTAGACGTG 59.504 45.833 0.00 0.00 34.70 4.49
3872 8589 3.489180 ACTGAATTCGAGTAGACGTGG 57.511 47.619 0.00 0.00 34.70 4.94
3873 8590 3.079578 ACTGAATTCGAGTAGACGTGGA 58.920 45.455 0.00 0.00 34.70 4.02
3874 8591 3.504906 ACTGAATTCGAGTAGACGTGGAA 59.495 43.478 0.00 0.00 34.70 3.53
3875 8592 4.158025 ACTGAATTCGAGTAGACGTGGAAT 59.842 41.667 0.00 0.00 34.70 3.01
3876 8593 5.356190 ACTGAATTCGAGTAGACGTGGAATA 59.644 40.000 0.00 0.00 34.70 1.75
3877 8594 6.127814 ACTGAATTCGAGTAGACGTGGAATAA 60.128 38.462 0.00 0.00 34.70 1.40
3878 8595 6.623486 TGAATTCGAGTAGACGTGGAATAAA 58.377 36.000 0.00 0.00 34.70 1.40
3879 8596 7.262772 TGAATTCGAGTAGACGTGGAATAAAT 58.737 34.615 0.00 0.00 34.70 1.40
3880 8597 7.762615 TGAATTCGAGTAGACGTGGAATAAATT 59.237 33.333 0.00 0.00 34.70 1.82
3881 8598 8.488651 AATTCGAGTAGACGTGGAATAAATTT 57.511 30.769 0.00 0.00 34.70 1.82
3882 8599 9.590451 AATTCGAGTAGACGTGGAATAAATTTA 57.410 29.630 0.00 0.00 34.70 1.40
3883 8600 7.975866 TCGAGTAGACGTGGAATAAATTTAC 57.024 36.000 0.00 0.00 34.70 2.01
3884 8601 7.537715 TCGAGTAGACGTGGAATAAATTTACA 58.462 34.615 0.00 0.00 34.70 2.41
3951 8668 7.786178 AGTGTTTCTTCCCTTAAATTTTTGC 57.214 32.000 0.00 0.00 0.00 3.68
3952 8669 6.478673 AGTGTTTCTTCCCTTAAATTTTTGCG 59.521 34.615 0.00 0.00 0.00 4.85
3953 8670 5.755861 TGTTTCTTCCCTTAAATTTTTGCGG 59.244 36.000 0.00 0.00 0.00 5.69
3954 8671 3.920446 TCTTCCCTTAAATTTTTGCGGC 58.080 40.909 0.00 0.00 0.00 6.53
3959 8677 3.445805 CCCTTAAATTTTTGCGGCCTAGA 59.554 43.478 0.00 0.00 0.00 2.43
3971 8689 1.676014 CGGCCTAGAAACCACCTGAAG 60.676 57.143 0.00 0.00 0.00 3.02
4018 8736 4.048470 GAACACAGCCCCCTCCCC 62.048 72.222 0.00 0.00 0.00 4.81
4046 8764 1.800315 CGCCGTCTCGTCGAAATGT 60.800 57.895 0.00 0.00 0.00 2.71
4057 8775 2.595655 GAAATGTAGCCGCCCCCT 59.404 61.111 0.00 0.00 0.00 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 2.474816 GGCATCTGATACGTCTCCAAC 58.525 52.381 0.00 0.00 0.00 3.77
24 25 1.067060 CGGCATCTGATACGTCTCCAA 59.933 52.381 0.00 0.00 0.00 3.53
25 26 0.668535 CGGCATCTGATACGTCTCCA 59.331 55.000 0.00 0.00 0.00 3.86
26 27 0.039074 CCGGCATCTGATACGTCTCC 60.039 60.000 0.00 0.00 0.00 3.71
27 28 0.664767 GCCGGCATCTGATACGTCTC 60.665 60.000 24.80 0.00 0.00 3.36
28 29 1.364171 GCCGGCATCTGATACGTCT 59.636 57.895 24.80 0.00 0.00 4.18
29 30 1.664965 GGCCGGCATCTGATACGTC 60.665 63.158 30.85 1.22 0.00 4.34
30 31 2.421739 GGCCGGCATCTGATACGT 59.578 61.111 30.85 0.00 0.00 3.57
31 32 2.734723 CGGCCGGCATCTGATACG 60.735 66.667 30.85 16.19 0.00 3.06
32 33 2.357517 CCGGCCGGCATCTGATAC 60.358 66.667 34.96 6.91 0.00 2.24
42 43 1.219522 CGTCTATTTAAGCCGGCCGG 61.220 60.000 40.26 40.26 38.57 6.13
43 44 0.249155 TCGTCTATTTAAGCCGGCCG 60.249 55.000 26.15 21.04 0.00 6.13
44 45 1.202498 ACTCGTCTATTTAAGCCGGCC 60.202 52.381 26.15 5.07 0.00 6.13
45 46 2.220479 ACTCGTCTATTTAAGCCGGC 57.780 50.000 21.89 21.89 0.00 6.13
46 47 3.308866 CCAAACTCGTCTATTTAAGCCGG 59.691 47.826 0.00 0.00 0.00 6.13
47 48 3.242316 GCCAAACTCGTCTATTTAAGCCG 60.242 47.826 0.00 0.00 0.00 5.52
48 49 3.939592 AGCCAAACTCGTCTATTTAAGCC 59.060 43.478 0.00 0.00 0.00 4.35
49 50 5.447413 GGAAGCCAAACTCGTCTATTTAAGC 60.447 44.000 0.00 0.00 0.00 3.09
50 51 5.220416 CGGAAGCCAAACTCGTCTATTTAAG 60.220 44.000 0.00 0.00 0.00 1.85
51 52 4.628333 CGGAAGCCAAACTCGTCTATTTAA 59.372 41.667 0.00 0.00 0.00 1.52
52 53 4.178540 CGGAAGCCAAACTCGTCTATTTA 58.821 43.478 0.00 0.00 0.00 1.40
53 54 3.000727 CGGAAGCCAAACTCGTCTATTT 58.999 45.455 0.00 0.00 0.00 1.40
54 55 2.618053 CGGAAGCCAAACTCGTCTATT 58.382 47.619 0.00 0.00 0.00 1.73
55 56 1.134788 CCGGAAGCCAAACTCGTCTAT 60.135 52.381 0.00 0.00 0.00 1.98
56 57 0.245539 CCGGAAGCCAAACTCGTCTA 59.754 55.000 0.00 0.00 0.00 2.59
57 58 1.004918 CCGGAAGCCAAACTCGTCT 60.005 57.895 0.00 0.00 0.00 4.18
58 59 2.677979 GCCGGAAGCCAAACTCGTC 61.678 63.158 5.05 0.00 34.35 4.20
59 60 2.668550 GCCGGAAGCCAAACTCGT 60.669 61.111 5.05 0.00 34.35 4.18
60 61 3.788766 CGCCGGAAGCCAAACTCG 61.789 66.667 5.05 0.00 38.78 4.18
61 62 3.431725 CCGCCGGAAGCCAAACTC 61.432 66.667 5.05 0.00 38.78 3.01
85 86 3.119096 GAAACCAGACGCCGCTCC 61.119 66.667 0.00 0.00 0.00 4.70
86 87 3.119096 GGAAACCAGACGCCGCTC 61.119 66.667 0.00 0.00 0.00 5.03
92 93 4.367023 TCGCCCGGAAACCAGACG 62.367 66.667 0.73 0.00 0.00 4.18
93 94 2.434359 CTCGCCCGGAAACCAGAC 60.434 66.667 0.73 0.00 0.00 3.51
94 95 4.388499 GCTCGCCCGGAAACCAGA 62.388 66.667 0.73 0.00 0.00 3.86
112 113 0.314302 GACGATGAGGTCCCATACGG 59.686 60.000 0.00 0.00 0.00 4.02
113 114 0.040336 CGACGATGAGGTCCCATACG 60.040 60.000 0.00 0.00 33.30 3.06
114 115 0.314302 CCGACGATGAGGTCCCATAC 59.686 60.000 0.00 0.00 33.30 2.39
115 116 0.106369 ACCGACGATGAGGTCCCATA 60.106 55.000 0.00 0.00 35.50 2.74
116 117 1.381327 ACCGACGATGAGGTCCCAT 60.381 57.895 0.00 0.00 35.50 4.00
117 118 2.036731 ACCGACGATGAGGTCCCA 59.963 61.111 0.00 0.00 35.50 4.37
121 122 1.319541 CATAGGACCGACGATGAGGT 58.680 55.000 0.00 0.00 44.64 3.85
122 123 1.001268 CACATAGGACCGACGATGAGG 60.001 57.143 0.00 0.00 0.00 3.86
123 124 1.001268 CCACATAGGACCGACGATGAG 60.001 57.143 0.00 0.00 41.22 2.90
124 125 1.029681 CCACATAGGACCGACGATGA 58.970 55.000 0.00 0.00 41.22 2.92
125 126 0.597637 GCCACATAGGACCGACGATG 60.598 60.000 0.00 0.00 41.22 3.84
126 127 1.740285 GCCACATAGGACCGACGAT 59.260 57.895 0.00 0.00 41.22 3.73
127 128 2.767445 CGCCACATAGGACCGACGA 61.767 63.158 0.00 0.00 41.22 4.20
128 129 2.274232 TTCGCCACATAGGACCGACG 62.274 60.000 0.00 0.00 41.22 5.12
129 130 0.804933 GTTCGCCACATAGGACCGAC 60.805 60.000 0.00 0.00 41.22 4.79
130 131 1.514087 GTTCGCCACATAGGACCGA 59.486 57.895 0.00 0.00 41.22 4.69
131 132 1.876714 CGTTCGCCACATAGGACCG 60.877 63.158 0.00 0.00 41.22 4.79
132 133 2.171725 GCGTTCGCCACATAGGACC 61.172 63.158 5.87 0.00 41.22 4.46
133 134 3.395669 GCGTTCGCCACATAGGAC 58.604 61.111 5.87 0.00 41.22 3.85
155 156 2.048127 GCGGATATGGAGGCGTCC 60.048 66.667 18.69 18.69 44.24 4.79
156 157 2.048127 GGCGGATATGGAGGCGTC 60.048 66.667 0.00 0.00 0.00 5.19
157 158 2.725127 TAGGGCGGATATGGAGGCGT 62.725 60.000 0.00 0.00 0.00 5.68
158 159 1.330655 ATAGGGCGGATATGGAGGCG 61.331 60.000 0.00 0.00 0.00 5.52
159 160 1.789523 TATAGGGCGGATATGGAGGC 58.210 55.000 0.00 0.00 0.00 4.70
160 161 4.444876 CCAAATATAGGGCGGATATGGAGG 60.445 50.000 0.00 0.00 0.00 4.30
161 162 4.444876 CCCAAATATAGGGCGGATATGGAG 60.445 50.000 0.49 0.00 39.96 3.86
162 163 3.458118 CCCAAATATAGGGCGGATATGGA 59.542 47.826 0.49 0.00 39.96 3.41
163 164 3.820557 CCCAAATATAGGGCGGATATGG 58.179 50.000 0.49 0.00 39.96 2.74
173 174 6.124340 TCATCATATGCAGCCCAAATATAGG 58.876 40.000 0.00 0.00 0.00 2.57
174 175 6.827251 ACTCATCATATGCAGCCCAAATATAG 59.173 38.462 0.00 0.00 0.00 1.31
175 176 6.600427 CACTCATCATATGCAGCCCAAATATA 59.400 38.462 0.00 0.00 0.00 0.86
176 177 5.417894 CACTCATCATATGCAGCCCAAATAT 59.582 40.000 0.00 0.00 0.00 1.28
177 178 4.763279 CACTCATCATATGCAGCCCAAATA 59.237 41.667 0.00 0.00 0.00 1.40
178 179 3.572682 CACTCATCATATGCAGCCCAAAT 59.427 43.478 0.00 0.00 0.00 2.32
179 180 2.953648 CACTCATCATATGCAGCCCAAA 59.046 45.455 0.00 0.00 0.00 3.28
180 181 2.578786 CACTCATCATATGCAGCCCAA 58.421 47.619 0.00 0.00 0.00 4.12
181 182 1.816572 GCACTCATCATATGCAGCCCA 60.817 52.381 0.00 0.00 39.23 5.36
182 183 0.879765 GCACTCATCATATGCAGCCC 59.120 55.000 0.00 0.00 39.23 5.19
183 184 0.879765 GGCACTCATCATATGCAGCC 59.120 55.000 0.00 1.43 41.27 4.85
184 185 0.516001 CGGCACTCATCATATGCAGC 59.484 55.000 0.00 0.00 41.27 5.25
185 186 1.154197 CCGGCACTCATCATATGCAG 58.846 55.000 0.00 0.00 41.27 4.41
186 187 0.469494 ACCGGCACTCATCATATGCA 59.531 50.000 0.00 0.00 41.27 3.96
187 188 1.151668 GACCGGCACTCATCATATGC 58.848 55.000 0.00 0.00 38.68 3.14
188 189 2.410939 CTGACCGGCACTCATCATATG 58.589 52.381 0.00 0.00 0.00 1.78
189 190 1.270518 GCTGACCGGCACTCATCATAT 60.271 52.381 0.00 0.00 0.00 1.78
190 191 0.104855 GCTGACCGGCACTCATCATA 59.895 55.000 0.00 0.00 0.00 2.15
191 192 1.153289 GCTGACCGGCACTCATCAT 60.153 57.895 0.00 0.00 0.00 2.45
192 193 2.265739 GCTGACCGGCACTCATCA 59.734 61.111 0.00 0.00 0.00 3.07
193 194 2.512515 GGCTGACCGGCACTCATC 60.513 66.667 0.00 0.00 38.25 2.92
194 195 4.101448 GGGCTGACCGGCACTCAT 62.101 66.667 0.00 0.00 40.61 2.90
208 209 2.685850 TAGACCTTAAAAGCTCGGGC 57.314 50.000 0.00 0.00 39.06 6.13
209 210 7.201705 CCTTTAAATAGACCTTAAAAGCTCGGG 60.202 40.741 0.00 0.00 30.07 5.14
210 211 7.551617 TCCTTTAAATAGACCTTAAAAGCTCGG 59.448 37.037 0.00 0.00 30.07 4.63
211 212 8.388853 GTCCTTTAAATAGACCTTAAAAGCTCG 58.611 37.037 7.10 0.00 30.07 5.03
212 213 8.675504 GGTCCTTTAAATAGACCTTAAAAGCTC 58.324 37.037 21.86 1.63 45.49 4.09
213 214 8.577048 GGTCCTTTAAATAGACCTTAAAAGCT 57.423 34.615 21.86 0.00 45.49 3.74
249 250 6.594159 CCGGTCACTGACTAGTCATAATTTTT 59.406 38.462 25.35 2.40 39.13 1.94
250 251 6.106673 CCGGTCACTGACTAGTCATAATTTT 58.893 40.000 25.35 4.06 39.13 1.82
251 252 5.395324 CCCGGTCACTGACTAGTCATAATTT 60.395 44.000 25.35 5.75 39.13 1.82
252 253 4.099573 CCCGGTCACTGACTAGTCATAATT 59.900 45.833 25.35 8.15 39.13 1.40
253 254 3.637229 CCCGGTCACTGACTAGTCATAAT 59.363 47.826 25.35 11.74 39.13 1.28
254 255 3.021695 CCCGGTCACTGACTAGTCATAA 58.978 50.000 25.35 11.36 39.13 1.90
255 256 2.651455 CCCGGTCACTGACTAGTCATA 58.349 52.381 25.35 11.70 39.13 2.15
256 257 1.475403 CCCGGTCACTGACTAGTCAT 58.525 55.000 25.35 13.03 39.13 3.06
257 258 1.248785 GCCCGGTCACTGACTAGTCA 61.249 60.000 23.80 23.80 34.07 3.41
258 259 1.248785 TGCCCGGTCACTGACTAGTC 61.249 60.000 16.32 16.32 34.07 2.59
259 260 1.228769 TGCCCGGTCACTGACTAGT 60.229 57.895 9.08 0.00 37.75 2.57
260 261 1.513158 CTGCCCGGTCACTGACTAG 59.487 63.158 9.08 4.09 32.47 2.57
261 262 2.646175 GCTGCCCGGTCACTGACTA 61.646 63.158 9.08 0.00 32.47 2.59
262 263 4.008933 GCTGCCCGGTCACTGACT 62.009 66.667 9.08 0.00 32.47 3.41
279 280 4.280494 CTCATACGTCCGGGCGGG 62.280 72.222 34.31 21.42 35.98 6.13
280 281 3.214123 TCTCATACGTCCGGGCGG 61.214 66.667 34.31 15.69 35.98 6.13
281 282 2.025727 GTCTCATACGTCCGGGCG 59.974 66.667 29.88 29.88 37.94 6.13
282 283 2.025727 CGTCTCATACGTCCGGGC 59.974 66.667 0.00 0.00 46.72 6.13
290 291 1.517276 CGCGTCAAATCCGTCTCATAC 59.483 52.381 0.00 0.00 0.00 2.39
291 292 1.835121 CGCGTCAAATCCGTCTCATA 58.165 50.000 0.00 0.00 0.00 2.15
292 293 1.421410 GCGCGTCAAATCCGTCTCAT 61.421 55.000 8.43 0.00 0.00 2.90
293 294 2.092291 GCGCGTCAAATCCGTCTCA 61.092 57.895 8.43 0.00 0.00 3.27
294 295 2.695646 GCGCGTCAAATCCGTCTC 59.304 61.111 8.43 0.00 0.00 3.36
295 296 2.813908 GGCGCGTCAAATCCGTCT 60.814 61.111 5.47 0.00 0.00 4.18
296 297 3.861263 GGGCGCGTCAAATCCGTC 61.861 66.667 14.93 0.00 0.00 4.79
297 298 4.388499 AGGGCGCGTCAAATCCGT 62.388 61.111 14.93 0.00 0.00 4.69
298 299 3.864686 CAGGGCGCGTCAAATCCG 61.865 66.667 14.93 0.00 0.00 4.18
299 300 4.179579 GCAGGGCGCGTCAAATCC 62.180 66.667 14.93 0.27 0.00 3.01
308 309 3.275338 GCATCTACAGCAGGGCGC 61.275 66.667 0.00 0.00 42.91 6.53
309 310 1.593750 GAGCATCTACAGCAGGGCG 60.594 63.158 0.00 0.00 32.32 6.13
310 311 4.453093 GAGCATCTACAGCAGGGC 57.547 61.111 0.00 0.00 0.00 5.19
321 322 5.419542 TGTGTTATGTGGAGTTAGAGCATC 58.580 41.667 0.00 0.00 0.00 3.91
322 323 5.420725 TGTGTTATGTGGAGTTAGAGCAT 57.579 39.130 0.00 0.00 0.00 3.79
323 324 4.882842 TGTGTTATGTGGAGTTAGAGCA 57.117 40.909 0.00 0.00 0.00 4.26
324 325 6.743575 AATTGTGTTATGTGGAGTTAGAGC 57.256 37.500 0.00 0.00 0.00 4.09
325 326 8.771920 TGTAATTGTGTTATGTGGAGTTAGAG 57.228 34.615 0.00 0.00 0.00 2.43
326 327 9.562408 TTTGTAATTGTGTTATGTGGAGTTAGA 57.438 29.630 0.00 0.00 0.00 2.10
328 329 9.953697 GTTTTGTAATTGTGTTATGTGGAGTTA 57.046 29.630 0.00 0.00 0.00 2.24
329 330 7.646130 CGTTTTGTAATTGTGTTATGTGGAGTT 59.354 33.333 0.00 0.00 0.00 3.01
330 331 7.012515 TCGTTTTGTAATTGTGTTATGTGGAGT 59.987 33.333 0.00 0.00 0.00 3.85
331 332 7.356540 TCGTTTTGTAATTGTGTTATGTGGAG 58.643 34.615 0.00 0.00 0.00 3.86
332 333 7.260558 TCGTTTTGTAATTGTGTTATGTGGA 57.739 32.000 0.00 0.00 0.00 4.02
333 334 7.805542 TCATCGTTTTGTAATTGTGTTATGTGG 59.194 33.333 0.00 0.00 0.00 4.17
334 335 8.720909 TCATCGTTTTGTAATTGTGTTATGTG 57.279 30.769 0.00 0.00 0.00 3.21
335 336 9.737427 TTTCATCGTTTTGTAATTGTGTTATGT 57.263 25.926 0.00 0.00 0.00 2.29
336 337 9.987901 GTTTCATCGTTTTGTAATTGTGTTATG 57.012 29.630 0.00 0.00 0.00 1.90
337 338 8.897809 CGTTTCATCGTTTTGTAATTGTGTTAT 58.102 29.630 0.00 0.00 0.00 1.89
338 339 8.121086 TCGTTTCATCGTTTTGTAATTGTGTTA 58.879 29.630 0.00 0.00 0.00 2.41
339 340 6.967767 TCGTTTCATCGTTTTGTAATTGTGTT 59.032 30.769 0.00 0.00 0.00 3.32
340 341 6.412653 GTCGTTTCATCGTTTTGTAATTGTGT 59.587 34.615 0.00 0.00 0.00 3.72
367 368 5.710513 TGTCAACTCTCAAATTTCCCATG 57.289 39.130 0.00 0.00 0.00 3.66
368 369 6.494491 TGAATGTCAACTCTCAAATTTCCCAT 59.506 34.615 0.00 0.00 0.00 4.00
369 370 5.832595 TGAATGTCAACTCTCAAATTTCCCA 59.167 36.000 0.00 0.00 0.00 4.37
370 371 6.331369 TGAATGTCAACTCTCAAATTTCCC 57.669 37.500 0.00 0.00 0.00 3.97
371 372 6.364435 GCTTGAATGTCAACTCTCAAATTTCC 59.636 38.462 0.00 0.00 32.21 3.13
372 373 6.919662 TGCTTGAATGTCAACTCTCAAATTTC 59.080 34.615 0.00 0.00 32.21 2.17
373 374 6.808829 TGCTTGAATGTCAACTCTCAAATTT 58.191 32.000 0.00 0.00 32.21 1.82
374 375 6.395426 TGCTTGAATGTCAACTCTCAAATT 57.605 33.333 0.00 0.00 32.21 1.82
375 376 5.048224 CCTGCTTGAATGTCAACTCTCAAAT 60.048 40.000 0.00 0.00 32.21 2.32
376 377 4.276678 CCTGCTTGAATGTCAACTCTCAAA 59.723 41.667 0.00 0.00 32.21 2.69
383 384 1.200948 GCCTCCTGCTTGAATGTCAAC 59.799 52.381 0.00 0.00 36.87 3.18
394 395 1.065126 GGTTACTGAATGCCTCCTGCT 60.065 52.381 0.00 0.00 42.00 4.24
906 977 3.563479 GGGTTCTTGATTTCTTGGGGCTA 60.563 47.826 0.00 0.00 0.00 3.93
919 997 2.522367 GGGGACGGTGGGTTCTTGA 61.522 63.158 0.00 0.00 0.00 3.02
953 1031 2.363147 GTGGAGAGAGAGGCGGGT 60.363 66.667 0.00 0.00 0.00 5.28
986 1083 2.765807 CCATCGGAGGGCAGAGGT 60.766 66.667 0.00 0.00 0.00 3.85
1345 1492 4.452733 GTTGGCGCGGAGGTAGCT 62.453 66.667 8.83 0.00 0.00 3.32
1546 2175 9.952188 GCTAATACTCTGAATTTTCAATAACCC 57.048 33.333 0.00 0.00 36.64 4.11
1547 2176 9.651718 CGCTAATACTCTGAATTTTCAATAACC 57.348 33.333 0.00 0.00 36.64 2.85
1550 2179 9.042008 GGTCGCTAATACTCTGAATTTTCAATA 57.958 33.333 0.00 0.00 36.64 1.90
1889 2753 1.473278 AGGAAGACGACGATCCAGAAC 59.527 52.381 17.00 0.00 35.62 3.01
1970 2896 7.702348 GTCCATAACAAATTCAATCAAGGCTAC 59.298 37.037 0.00 0.00 0.00 3.58
1972 2898 6.438425 AGTCCATAACAAATTCAATCAAGGCT 59.562 34.615 0.00 0.00 0.00 4.58
1973 2899 6.633856 AGTCCATAACAAATTCAATCAAGGC 58.366 36.000 0.00 0.00 0.00 4.35
1977 2903 9.585099 GCAAATAGTCCATAACAAATTCAATCA 57.415 29.630 0.00 0.00 0.00 2.57
1979 2905 9.590451 CAGCAAATAGTCCATAACAAATTCAAT 57.410 29.630 0.00 0.00 0.00 2.57
1988 2914 5.048713 GGCCATACAGCAAATAGTCCATAAC 60.049 44.000 0.00 0.00 0.00 1.89
1989 2915 5.070001 GGCCATACAGCAAATAGTCCATAA 58.930 41.667 0.00 0.00 0.00 1.90
1990 2916 4.103943 TGGCCATACAGCAAATAGTCCATA 59.896 41.667 0.00 0.00 0.00 2.74
1991 2917 3.117550 TGGCCATACAGCAAATAGTCCAT 60.118 43.478 0.00 0.00 0.00 3.41
1992 2918 2.240921 TGGCCATACAGCAAATAGTCCA 59.759 45.455 0.00 0.00 0.00 4.02
1993 2919 2.930950 TGGCCATACAGCAAATAGTCC 58.069 47.619 0.00 0.00 0.00 3.85
1994 2920 4.136796 TCATGGCCATACAGCAAATAGTC 58.863 43.478 20.30 0.00 0.00 2.59
1995 2921 4.169059 TCATGGCCATACAGCAAATAGT 57.831 40.909 20.30 0.00 0.00 2.12
1996 2922 5.008331 AGATCATGGCCATACAGCAAATAG 58.992 41.667 20.30 1.51 0.00 1.73
1997 2923 4.989277 AGATCATGGCCATACAGCAAATA 58.011 39.130 20.30 0.00 0.00 1.40
1998 2924 3.840991 AGATCATGGCCATACAGCAAAT 58.159 40.909 20.30 3.49 0.00 2.32
1999 2925 3.301794 AGATCATGGCCATACAGCAAA 57.698 42.857 20.30 0.00 0.00 3.68
2000 2926 3.301794 AAGATCATGGCCATACAGCAA 57.698 42.857 20.30 0.07 0.00 3.91
2001 2927 2.953648 CAAAGATCATGGCCATACAGCA 59.046 45.455 20.30 0.06 0.00 4.41
2002 2928 2.288030 GCAAAGATCATGGCCATACAGC 60.288 50.000 20.30 11.09 0.00 4.40
2003 2929 3.220110 AGCAAAGATCATGGCCATACAG 58.780 45.455 20.30 6.56 0.00 2.74
2004 2930 3.301794 AGCAAAGATCATGGCCATACA 57.698 42.857 20.30 8.64 0.00 2.29
2005 2931 5.336213 CCAATAGCAAAGATCATGGCCATAC 60.336 44.000 20.30 12.94 0.00 2.39
2006 2932 4.768448 CCAATAGCAAAGATCATGGCCATA 59.232 41.667 20.30 7.65 0.00 2.74
2007 2933 3.576982 CCAATAGCAAAGATCATGGCCAT 59.423 43.478 14.09 14.09 0.00 4.40
2008 2934 2.960384 CCAATAGCAAAGATCATGGCCA 59.040 45.455 8.56 8.56 0.00 5.36
2009 2935 2.298163 CCCAATAGCAAAGATCATGGCC 59.702 50.000 0.00 0.00 0.00 5.36
2010 2936 2.298163 CCCCAATAGCAAAGATCATGGC 59.702 50.000 0.00 0.00 0.00 4.40
2011 2937 2.895404 CCCCCAATAGCAAAGATCATGG 59.105 50.000 0.00 0.00 0.00 3.66
2012 2938 3.319972 CACCCCCAATAGCAAAGATCATG 59.680 47.826 0.00 0.00 0.00 3.07
2013 2939 3.569491 CACCCCCAATAGCAAAGATCAT 58.431 45.455 0.00 0.00 0.00 2.45
2014 2940 2.949963 GCACCCCCAATAGCAAAGATCA 60.950 50.000 0.00 0.00 0.00 2.92
2015 2941 1.683385 GCACCCCCAATAGCAAAGATC 59.317 52.381 0.00 0.00 0.00 2.75
2016 2942 1.288932 AGCACCCCCAATAGCAAAGAT 59.711 47.619 0.00 0.00 0.00 2.40
2017 2943 0.704076 AGCACCCCCAATAGCAAAGA 59.296 50.000 0.00 0.00 0.00 2.52
2018 2944 2.435372 TAGCACCCCCAATAGCAAAG 57.565 50.000 0.00 0.00 0.00 2.77
2019 2945 2.909504 TTAGCACCCCCAATAGCAAA 57.090 45.000 0.00 0.00 0.00 3.68
2020 2946 2.513738 AGATTAGCACCCCCAATAGCAA 59.486 45.455 0.00 0.00 0.00 3.91
2021 2947 2.135189 AGATTAGCACCCCCAATAGCA 58.865 47.619 0.00 0.00 0.00 3.49
2022 2948 2.508526 CAGATTAGCACCCCCAATAGC 58.491 52.381 0.00 0.00 0.00 2.97
2023 2949 2.107204 AGCAGATTAGCACCCCCAATAG 59.893 50.000 0.00 0.00 36.85 1.73
2186 4460 3.372566 CCCCAATAACCATCTAGCCACAA 60.373 47.826 0.00 0.00 0.00 3.33
2217 4492 4.717991 TGTGCGTAAACATGCTATCAAAC 58.282 39.130 0.00 0.00 0.00 2.93
2290 4658 9.466497 TGTTAAGGCTGAAAGAGATTAATCAAT 57.534 29.630 17.56 2.59 34.07 2.57
2445 6887 8.425577 AAATAACAAGACCGAGAATACATCTG 57.574 34.615 0.00 0.00 38.96 2.90
2739 7209 5.241506 ACATGGCATTTACTATTCCCATTCG 59.758 40.000 0.00 0.00 31.08 3.34
2851 7388 7.630242 TTTAGGTTCCATAATTTCTGCTGAG 57.370 36.000 0.00 0.00 0.00 3.35
2856 7393 7.410120 AGCCTTTTAGGTTCCATAATTTCTG 57.590 36.000 0.00 0.00 37.80 3.02
2857 7394 8.336987 ACTAGCCTTTTAGGTTCCATAATTTCT 58.663 33.333 0.00 0.00 37.80 2.52
2860 7397 7.639378 TGACTAGCCTTTTAGGTTCCATAATT 58.361 34.615 0.00 0.00 37.80 1.40
2861 7398 7.208064 TGACTAGCCTTTTAGGTTCCATAAT 57.792 36.000 0.00 0.00 37.80 1.28
2862 7399 6.630203 TGACTAGCCTTTTAGGTTCCATAA 57.370 37.500 0.00 0.00 37.80 1.90
2863 7400 6.824958 ATGACTAGCCTTTTAGGTTCCATA 57.175 37.500 0.00 0.00 37.80 2.74
2864 7401 5.717119 ATGACTAGCCTTTTAGGTTCCAT 57.283 39.130 0.00 0.00 37.80 3.41
2865 7402 5.514500 AATGACTAGCCTTTTAGGTTCCA 57.486 39.130 0.00 0.00 37.80 3.53
2866 7403 6.835819 AAAATGACTAGCCTTTTAGGTTCC 57.164 37.500 0.00 0.00 37.80 3.62
2869 7406 9.969001 TGTTATAAAATGACTAGCCTTTTAGGT 57.031 29.630 9.31 0.00 37.80 3.08
2874 7411 9.586435 GCAAATGTTATAAAATGACTAGCCTTT 57.414 29.630 0.00 0.00 0.00 3.11
2875 7412 8.971073 AGCAAATGTTATAAAATGACTAGCCTT 58.029 29.630 0.00 0.00 0.00 4.35
2876 7413 8.408601 CAGCAAATGTTATAAAATGACTAGCCT 58.591 33.333 0.00 0.00 0.00 4.58
2877 7414 7.168135 GCAGCAAATGTTATAAAATGACTAGCC 59.832 37.037 0.00 0.00 0.00 3.93
2878 7415 7.917505 AGCAGCAAATGTTATAAAATGACTAGC 59.082 33.333 0.00 0.00 0.00 3.42
2881 7418 8.960591 ACTAGCAGCAAATGTTATAAAATGACT 58.039 29.630 0.00 0.00 0.00 3.41
2890 7427 9.784531 ATAATGTCTACTAGCAGCAAATGTTAT 57.215 29.630 0.00 0.00 0.00 1.89
2911 7448 7.054124 TGACTAGCCTTTTAGGTTCCATAATG 58.946 38.462 0.00 0.00 37.80 1.90
3195 7849 1.560860 GCGTCCAGTTCTGCTGTCAC 61.561 60.000 0.00 0.00 43.55 3.67
3367 8029 9.287373 ACTTCATTTTCCATTTATGCAAAATGT 57.713 25.926 21.99 8.63 42.76 2.71
3390 8052 2.017049 GTCACACTGCAAGAACCACTT 58.983 47.619 0.00 0.00 39.70 3.16
3498 8164 2.282180 ATGAAACCGGGCGCAACT 60.282 55.556 10.83 0.00 0.00 3.16
3657 8372 1.091771 AATTCAGGTGCTCGGCATCG 61.092 55.000 1.90 0.00 45.38 3.84
3770 8487 1.200483 CACTCGATCCAACGAATCGG 58.800 55.000 7.80 0.00 41.67 4.18
3806 8523 9.601217 AAAGAAATGTAGCGTTTATAGATCAGT 57.399 29.630 0.00 0.00 0.00 3.41
3817 8534 6.688578 TCTCTCTGTAAAGAAATGTAGCGTT 58.311 36.000 0.00 0.00 0.00 4.84
3824 8541 7.763528 AGCATGTACTCTCTCTGTAAAGAAATG 59.236 37.037 0.00 0.00 0.00 2.32
3839 8556 6.127591 ACTCGAATTCAGTTAGCATGTACTCT 60.128 38.462 6.22 0.00 0.00 3.24
3855 8572 7.695869 ATTTATTCCACGTCTACTCGAATTC 57.304 36.000 0.00 0.00 34.70 2.17
3856 8573 8.488651 AAATTTATTCCACGTCTACTCGAATT 57.511 30.769 0.00 0.00 34.70 2.17
3857 8574 9.028185 GTAAATTTATTCCACGTCTACTCGAAT 57.972 33.333 0.31 0.00 34.70 3.34
3858 8575 8.028354 TGTAAATTTATTCCACGTCTACTCGAA 58.972 33.333 0.31 0.00 34.70 3.71
3859 8576 7.537715 TGTAAATTTATTCCACGTCTACTCGA 58.462 34.615 0.31 0.00 34.70 4.04
3860 8577 7.043590 CCTGTAAATTTATTCCACGTCTACTCG 60.044 40.741 0.31 0.00 0.00 4.18
3861 8578 7.977853 TCCTGTAAATTTATTCCACGTCTACTC 59.022 37.037 0.31 0.00 0.00 2.59
3862 8579 7.844009 TCCTGTAAATTTATTCCACGTCTACT 58.156 34.615 0.31 0.00 0.00 2.57
3863 8580 8.658499 ATCCTGTAAATTTATTCCACGTCTAC 57.342 34.615 0.31 0.00 0.00 2.59
3864 8581 7.929785 GGATCCTGTAAATTTATTCCACGTCTA 59.070 37.037 3.84 0.00 0.00 2.59
3865 8582 6.766467 GGATCCTGTAAATTTATTCCACGTCT 59.234 38.462 3.84 0.00 0.00 4.18
3866 8583 6.766467 AGGATCCTGTAAATTTATTCCACGTC 59.234 38.462 15.29 0.00 0.00 4.34
3867 8584 6.542370 CAGGATCCTGTAAATTTATTCCACGT 59.458 38.462 30.55 0.00 39.10 4.49
3868 8585 6.513393 GCAGGATCCTGTAAATTTATTCCACG 60.513 42.308 36.32 10.95 45.24 4.94
3869 8586 6.547510 AGCAGGATCCTGTAAATTTATTCCAC 59.452 38.462 36.32 18.12 45.24 4.02
3870 8587 6.672593 AGCAGGATCCTGTAAATTTATTCCA 58.327 36.000 36.32 0.00 45.24 3.53
3871 8588 8.568794 GTTAGCAGGATCCTGTAAATTTATTCC 58.431 37.037 36.32 18.69 45.24 3.01
3872 8589 9.343539 AGTTAGCAGGATCCTGTAAATTTATTC 57.656 33.333 36.32 19.15 45.24 1.75
3873 8590 9.700831 AAGTTAGCAGGATCCTGTAAATTTATT 57.299 29.630 36.32 20.43 45.24 1.40
3874 8591 9.125026 CAAGTTAGCAGGATCCTGTAAATTTAT 57.875 33.333 36.32 17.55 45.24 1.40
3875 8592 7.556275 CCAAGTTAGCAGGATCCTGTAAATTTA 59.444 37.037 36.32 19.07 45.24 1.40
3876 8593 6.378280 CCAAGTTAGCAGGATCCTGTAAATTT 59.622 38.462 36.32 28.13 45.24 1.82
3877 8594 5.888161 CCAAGTTAGCAGGATCCTGTAAATT 59.112 40.000 36.32 30.40 45.24 1.82
3878 8595 5.440610 CCAAGTTAGCAGGATCCTGTAAAT 58.559 41.667 36.32 27.63 45.24 1.40
3879 8596 4.843728 CCAAGTTAGCAGGATCCTGTAAA 58.156 43.478 36.32 27.87 45.24 2.01
3880 8597 3.370527 GCCAAGTTAGCAGGATCCTGTAA 60.371 47.826 36.32 28.46 45.24 2.41
3881 8598 2.170607 GCCAAGTTAGCAGGATCCTGTA 59.829 50.000 36.32 25.30 45.24 2.74
3882 8599 1.065126 GCCAAGTTAGCAGGATCCTGT 60.065 52.381 36.32 26.21 45.24 4.00
3883 8600 1.673168 GCCAAGTTAGCAGGATCCTG 58.327 55.000 33.73 33.73 46.15 3.86
3884 8601 0.548510 GGCCAAGTTAGCAGGATCCT 59.451 55.000 9.02 9.02 0.00 3.24
3951 8668 0.323629 TTCAGGTGGTTTCTAGGCCG 59.676 55.000 0.00 0.00 0.00 6.13
3952 8669 1.340114 CCTTCAGGTGGTTTCTAGGCC 60.340 57.143 0.00 0.00 0.00 5.19
3953 8670 2.115343 CCTTCAGGTGGTTTCTAGGC 57.885 55.000 0.00 0.00 0.00 3.93
4041 8759 2.275418 CAGGGGGCGGCTACATTT 59.725 61.111 9.56 0.00 0.00 2.32



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.