Multiple sequence alignment - TraesCS7D01G118100

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BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G118100 chr7D 100.000 9566 0 0 1 9566 73106102 73115667 0.000000e+00 17666.0
1 TraesCS7D01G118100 chr7D 96.000 375 12 3 173 545 188355937 188356310 2.950000e-169 606.0
2 TraesCS7D01G118100 chr7D 94.839 155 6 2 567 719 16400045 16399891 3.450000e-59 241.0
3 TraesCS7D01G118100 chr7D 96.479 142 4 1 579 719 365648918 365648777 5.780000e-57 233.0
4 TraesCS7D01G118100 chr7D 92.453 159 8 4 564 721 303982606 303982761 3.480000e-54 224.0
5 TraesCS7D01G118100 chr7D 91.200 125 10 1 53 176 388700136 388700012 1.650000e-37 169.0
6 TraesCS7D01G118100 chr7D 96.491 57 2 0 3 59 188355884 188355940 2.840000e-15 95.3
7 TraesCS7D01G118100 chr7D 100.000 34 0 0 7355 7388 347161222 347161255 8.020000e-06 63.9
8 TraesCS7D01G118100 chr7A 94.153 2959 121 20 2810 5747 77203304 77200377 0.000000e+00 4458.0
9 TraesCS7D01G118100 chr7A 93.162 2062 106 17 721 2761 77205359 77203312 0.000000e+00 2994.0
10 TraesCS7D01G118100 chr7A 90.405 938 57 12 7493 8403 77198707 77197776 0.000000e+00 1203.0
11 TraesCS7D01G118100 chr7A 92.721 838 50 7 1539 2375 117151441 117152268 0.000000e+00 1199.0
12 TraesCS7D01G118100 chr7A 92.243 838 53 8 1539 2375 665802254 665803080 0.000000e+00 1177.0
13 TraesCS7D01G118100 chr7A 95.164 579 24 3 1 578 77205926 77205351 0.000000e+00 911.0
14 TraesCS7D01G118100 chr7A 94.035 570 23 6 6692 7258 77199280 77198719 0.000000e+00 854.0
15 TraesCS7D01G118100 chr7A 97.938 97 2 0 5748 5844 77200193 77200097 1.650000e-37 169.0
16 TraesCS7D01G118100 chr7A 74.212 539 61 29 8446 8933 77197776 77197265 4.630000e-33 154.0
17 TraesCS7D01G118100 chr7A 83.893 149 23 1 4519 4666 712101791 712101643 3.600000e-29 141.0
18 TraesCS7D01G118100 chr7B 94.447 2143 84 15 1834 3963 15307886 15305766 0.000000e+00 3265.0
19 TraesCS7D01G118100 chr7B 93.809 2132 89 18 2464 4574 15039624 15037515 0.000000e+00 3166.0
20 TraesCS7D01G118100 chr7B 94.859 1809 58 17 3962 5747 15305662 15303866 0.000000e+00 2793.0
21 TraesCS7D01G118100 chr7B 93.695 904 41 10 4585 5481 15032523 15031629 0.000000e+00 1339.0
22 TraesCS7D01G118100 chr7B 91.089 909 60 15 938 1835 15308866 15307968 0.000000e+00 1210.0
23 TraesCS7D01G118100 chr7B 90.134 821 65 9 7259 8067 15022332 15021516 0.000000e+00 1053.0
24 TraesCS7D01G118100 chr7B 88.333 840 63 13 7259 8067 15302904 15302069 0.000000e+00 976.0
25 TraesCS7D01G118100 chr7B 94.331 635 25 4 6623 7257 15303587 15302964 0.000000e+00 963.0
26 TraesCS7D01G118100 chr7B 96.558 523 14 1 1940 2462 15052966 15052448 0.000000e+00 863.0
27 TraesCS7D01G118100 chr7B 89.686 669 51 6 7259 7923 15100916 15100262 0.000000e+00 837.0
28 TraesCS7D01G118100 chr7B 92.915 494 23 5 6623 7116 15029227 15028746 0.000000e+00 708.0
29 TraesCS7D01G118100 chr7B 95.724 421 10 4 5842 6262 150064548 150064136 0.000000e+00 671.0
30 TraesCS7D01G118100 chr7B 93.882 425 21 3 5842 6262 89786321 89785898 3.770000e-178 636.0
31 TraesCS7D01G118100 chr7B 91.156 441 27 6 8768 9198 15301467 15301029 1.070000e-163 588.0
32 TraesCS7D01G118100 chr7B 83.882 577 73 11 8921 9481 15289379 15288807 5.090000e-147 532.0
33 TraesCS7D01G118100 chr7B 92.758 359 23 1 6260 6618 89781553 89781198 5.120000e-142 516.0
34 TraesCS7D01G118100 chr7B 96.831 284 8 1 6260 6543 150064074 150063792 3.130000e-129 473.0
35 TraesCS7D01G118100 chr7B 89.373 367 23 9 8832 9198 15072793 15072443 1.900000e-121 448.0
36 TraesCS7D01G118100 chr7B 95.035 282 13 1 8123 8403 15021507 15021226 8.820000e-120 442.0
37 TraesCS7D01G118100 chr7B 93.603 297 17 2 8109 8403 15079599 15079303 8.820000e-120 442.0
38 TraesCS7D01G118100 chr7B 90.549 328 17 7 9186 9510 15072407 15072091 1.150000e-113 422.0
39 TraesCS7D01G118100 chr7B 95.038 262 9 1 9250 9511 15020792 15020535 8.940000e-110 409.0
40 TraesCS7D01G118100 chr7B 90.000 320 23 4 9250 9566 15300949 15300636 1.160000e-108 405.0
41 TraesCS7D01G118100 chr7B 91.786 280 13 5 8123 8402 15302060 15301791 1.950000e-101 381.0
42 TraesCS7D01G118100 chr7B 93.023 215 15 0 8189 8403 15292479 15292265 2.010000e-81 315.0
43 TraesCS7D01G118100 chr7B 94.964 139 7 0 5474 5612 15031437 15031299 1.620000e-52 219.0
44 TraesCS7D01G118100 chr7B 90.132 152 13 1 7916 8067 15079753 15079604 7.580000e-46 196.0
45 TraesCS7D01G118100 chr7B 81.070 243 27 7 5138 5373 217427873 217427643 9.870000e-40 176.0
46 TraesCS7D01G118100 chr7B 86.624 157 18 3 7103 7258 15022545 15022391 4.590000e-38 171.0
47 TraesCS7D01G118100 chr7B 97.938 97 2 0 5748 5844 15303680 15303584 1.650000e-37 169.0
48 TraesCS7D01G118100 chr7B 90.400 125 10 2 53 176 383736253 383736130 7.690000e-36 163.0
49 TraesCS7D01G118100 chr7B 84.177 158 20 5 4519 4672 749477829 749477985 2.150000e-31 148.0
50 TraesCS7D01G118100 chr7B 89.216 102 9 2 761 860 15318110 15318009 1.010000e-24 126.0
51 TraesCS7D01G118100 chr7B 86.207 116 16 0 6830 6945 312334515 312334630 1.010000e-24 126.0
52 TraesCS7D01G118100 chr7B 88.660 97 11 0 2757 2853 15225923 15225827 1.690000e-22 119.0
53 TraesCS7D01G118100 chr7B 91.011 89 4 3 5748 5836 15029316 15029232 6.070000e-22 117.0
54 TraesCS7D01G118100 chr7B 97.917 48 0 1 8403 8449 622426924 622426971 2.210000e-11 82.4
55 TraesCS7D01G118100 chr5A 92.721 838 50 7 1539 2375 409744325 409743498 0.000000e+00 1199.0
56 TraesCS7D01G118100 chr5A 94.851 369 16 3 177 544 281325766 281325400 3.000000e-159 573.0
57 TraesCS7D01G118100 chr5A 84.807 362 37 5 5388 5747 501421071 501420726 1.980000e-91 348.0
58 TraesCS7D01G118100 chr5A 80.392 408 52 16 6727 7107 501413819 501413413 1.570000e-72 285.0
59 TraesCS7D01G118100 chr5A 97.183 142 3 1 177 317 281327562 281327421 1.240000e-58 239.0
60 TraesCS7D01G118100 chr5A 83.893 149 23 1 4519 4666 605038447 605038299 3.600000e-29 141.0
61 TraesCS7D01G118100 chr5A 93.023 43 1 1 1450 1490 12738847 12738889 2.880000e-05 62.1
62 TraesCS7D01G118100 chr5A 93.023 43 1 1 1450 1490 497940395 497940437 2.880000e-05 62.1
63 TraesCS7D01G118100 chr5A 97.222 36 1 0 1455 1490 647849669 647849634 2.880000e-05 62.1
64 TraesCS7D01G118100 chr6A 92.806 834 48 8 1543 2375 421293083 421292261 0.000000e+00 1197.0
65 TraesCS7D01G118100 chr6A 94.102 373 20 2 173 545 389467737 389468107 5.010000e-157 566.0
66 TraesCS7D01G118100 chr6A 84.694 98 13 2 4516 4612 39004769 39004865 7.910000e-16 97.1
67 TraesCS7D01G118100 chr6A 94.737 57 3 0 3 59 389467684 389467740 1.320000e-13 89.8
68 TraesCS7D01G118100 chr6A 93.023 43 1 1 1450 1490 436834673 436834715 2.880000e-05 62.1
69 TraesCS7D01G118100 chr2A 92.601 838 51 7 1539 2375 30680922 30680095 0.000000e+00 1194.0
70 TraesCS7D01G118100 chr2A 92.464 836 52 7 1539 2373 149629722 149628897 0.000000e+00 1184.0
71 TraesCS7D01G118100 chr2A 92.363 838 53 7 1539 2375 518824566 518823739 0.000000e+00 1182.0
72 TraesCS7D01G118100 chr2A 95.455 374 15 2 173 545 733587981 733588353 6.400000e-166 595.0
73 TraesCS7D01G118100 chr2A 86.885 366 35 5 6260 6624 768268529 768268882 1.940000e-106 398.0
74 TraesCS7D01G118100 chr2A 82.158 482 63 10 6623 7082 8157359 8156879 9.010000e-105 392.0
75 TraesCS7D01G118100 chr2A 83.425 362 34 9 5388 5747 8159276 8158939 7.210000e-81 313.0
76 TraesCS7D01G118100 chr2A 80.165 242 31 5 5138 5373 8159601 8159371 2.140000e-36 165.0
77 TraesCS7D01G118100 chr2A 83.117 154 21 4 3880 4029 550548887 550549039 1.680000e-27 135.0
78 TraesCS7D01G118100 chr2A 94.231 52 3 0 8 59 733587933 733587984 7.960000e-11 80.5
79 TraesCS7D01G118100 chr2A 97.222 36 1 0 1455 1490 30680956 30680921 2.880000e-05 62.1
80 TraesCS7D01G118100 chr2A 90.698 43 3 1 7346 7388 394798758 394798799 1.000000e-03 56.5
81 TraesCS7D01G118100 chr3A 92.363 838 52 8 1539 2375 201789036 201788210 0.000000e+00 1182.0
82 TraesCS7D01G118100 chr3A 89.589 365 31 2 6260 6623 698144890 698144532 3.150000e-124 457.0
83 TraesCS7D01G118100 chr3A 89.589 365 31 2 6260 6623 720853837 720854195 3.150000e-124 457.0
84 TraesCS7D01G118100 chr3A 89.011 364 32 3 6260 6622 644993568 644993212 2.450000e-120 444.0
85 TraesCS7D01G118100 chr3A 91.892 296 21 3 5844 6138 644993926 644993633 2.490000e-110 411.0
86 TraesCS7D01G118100 chr3A 91.667 288 22 2 5856 6142 698145237 698144951 1.940000e-106 398.0
87 TraesCS7D01G118100 chr3A 85.714 364 34 13 6262 6619 666819792 666820143 1.520000e-97 368.0
88 TraesCS7D01G118100 chr3A 79.352 494 78 11 6623 7093 84092349 84092841 9.260000e-85 326.0
89 TraesCS7D01G118100 chr3A 80.913 241 30 6 5135 5370 84091586 84091815 9.870000e-40 176.0
90 TraesCS7D01G118100 chr3A 91.870 123 9 1 55 177 12239859 12239980 4.590000e-38 171.0
91 TraesCS7D01G118100 chr3A 79.911 224 30 4 5152 5370 84100912 84101125 5.980000e-32 150.0
92 TraesCS7D01G118100 chr5B 86.541 795 56 20 5844 6612 672447185 672446416 0.000000e+00 828.0
93 TraesCS7D01G118100 chr5B 86.415 795 55 21 5844 6612 672479534 672478767 0.000000e+00 821.0
94 TraesCS7D01G118100 chr5B 93.629 361 23 0 5902 6262 394003446 394003086 3.040000e-149 540.0
95 TraesCS7D01G118100 chr5B 83.221 298 39 8 257 544 554925461 554925757 7.370000e-66 263.0
96 TraesCS7D01G118100 chr5B 97.163 141 3 1 579 718 223710027 223709887 4.470000e-58 237.0
97 TraesCS7D01G118100 chr5B 96.454 141 4 1 579 718 582197731 582197871 2.080000e-56 231.0
98 TraesCS7D01G118100 chr5B 88.506 87 7 3 7693 7776 301511676 301511590 1.700000e-17 102.0
99 TraesCS7D01G118100 chr5B 86.747 83 11 0 7680 7762 288642233 288642315 1.020000e-14 93.5
100 TraesCS7D01G118100 chr5B 78.947 114 22 2 3923 4034 56925897 56925784 1.030000e-09 76.8
101 TraesCS7D01G118100 chr5B 80.808 99 17 2 3923 4019 595667186 595667284 1.030000e-09 76.8
102 TraesCS7D01G118100 chr5B 100.000 34 0 0 7355 7388 40763898 40763931 8.020000e-06 63.9
103 TraesCS7D01G118100 chr3D 94.385 374 19 2 173 545 601956524 601956152 3.000000e-159 573.0
104 TraesCS7D01G118100 chr3D 89.011 364 32 4 6262 6624 254742263 254741907 2.450000e-120 444.0
105 TraesCS7D01G118100 chr3D 90.123 324 24 2 5843 6159 254742667 254742345 1.920000e-111 414.0
106 TraesCS7D01G118100 chr3D 89.385 179 17 2 4693 4870 22101887 22102064 3.480000e-54 224.0
107 TraesCS7D01G118100 chr3D 79.213 178 25 10 3886 4058 293192805 293192635 7.850000e-21 113.0
108 TraesCS7D01G118100 chr3D 95.000 60 2 1 1 59 454425865 454425806 1.020000e-14 93.5
109 TraesCS7D01G118100 chr3D 85.393 89 12 1 7692 7779 311884287 311884375 3.680000e-14 91.6
110 TraesCS7D01G118100 chr3D 91.525 59 3 1 3 59 601956579 601956521 7.960000e-11 80.5
111 TraesCS7D01G118100 chr4A 93.817 372 21 2 173 544 163282827 163283196 8.390000e-155 558.0
112 TraesCS7D01G118100 chr4A 94.915 59 3 0 1 59 163282772 163282830 1.020000e-14 93.5
113 TraesCS7D01G118100 chr4B 93.298 373 23 2 173 544 658554083 658554454 5.050000e-152 549.0
114 TraesCS7D01G118100 chr4B 83.168 101 13 3 7680 7779 427994050 427994147 1.320000e-13 89.8
115 TraesCS7D01G118100 chr4B 87.838 74 8 1 3880 3953 546787864 546787936 1.710000e-12 86.1
116 TraesCS7D01G118100 chr4B 83.908 87 11 3 3881 3967 93286449 93286366 7.960000e-11 80.5
117 TraesCS7D01G118100 chr4B 78.947 114 22 2 3923 4034 89608365 89608252 1.030000e-09 76.8
118 TraesCS7D01G118100 chr4B 84.615 65 10 0 3886 3950 316294674 316294738 2.230000e-06 65.8
119 TraesCS7D01G118100 chr4B 78.788 99 19 2 3923 4019 495171338 495171436 2.230000e-06 65.8
120 TraesCS7D01G118100 chr4B 100.000 30 0 0 4519 4548 37193712 37193683 1.000000e-03 56.5
121 TraesCS7D01G118100 chr5D 90.385 364 27 3 6260 6621 100072028 100072385 1.120000e-128 472.0
122 TraesCS7D01G118100 chr5D 88.283 367 35 4 6262 6627 363329697 363330056 5.310000e-117 433.0
123 TraesCS7D01G118100 chr5D 92.414 290 18 4 5834 6122 100058086 100058372 2.490000e-110 411.0
124 TraesCS7D01G118100 chr5D 92.437 119 8 1 58 176 118840451 118840568 1.650000e-37 169.0
125 TraesCS7D01G118100 chr5D 90.000 90 8 1 7676 7765 533991827 533991915 2.180000e-21 115.0
126 TraesCS7D01G118100 chr5D 95.833 48 1 1 8403 8449 432334209 432334162 1.030000e-09 76.8
127 TraesCS7D01G118100 chr5D 95.833 48 1 1 8403 8449 503243869 503243822 1.030000e-09 76.8
128 TraesCS7D01G118100 chr5D 83.333 66 11 0 3984 4049 387998444 387998509 2.880000e-05 62.1
129 TraesCS7D01G118100 chrUn 83.213 554 43 19 6084 6612 67300787 67300259 6.770000e-126 462.0
130 TraesCS7D01G118100 chrUn 83.213 554 43 19 6084 6612 67304866 67305394 6.770000e-126 462.0
131 TraesCS7D01G118100 chrUn 95.833 48 1 1 8403 8449 216507521 216507568 1.030000e-09 76.8
132 TraesCS7D01G118100 chrUn 95.833 48 1 1 8403 8449 441243881 441243928 1.030000e-09 76.8
133 TraesCS7D01G118100 chr2D 80.442 634 76 26 6643 7254 643704448 643705055 3.170000e-119 440.0
134 TraesCS7D01G118100 chr2D 84.573 363 37 5 5388 5747 643690062 643690408 9.200000e-90 342.0
135 TraesCS7D01G118100 chr2D 96.528 144 4 1 576 718 296225849 296225706 4.470000e-58 237.0
136 TraesCS7D01G118100 chr2D 96.479 142 4 1 579 719 161767949 161767808 5.780000e-57 233.0
137 TraesCS7D01G118100 chr2D 95.862 145 4 2 579 721 261789428 261789572 5.780000e-57 233.0
138 TraesCS7D01G118100 chr2D 94.631 149 5 3 579 724 440953389 440953241 2.690000e-55 228.0
139 TraesCS7D01G118100 chr2D 82.278 158 21 6 4519 4672 560580827 560580673 7.800000e-26 130.0
140 TraesCS7D01G118100 chr2D 81.169 154 24 4 3880 4029 436379270 436379422 1.690000e-22 119.0
141 TraesCS7D01G118100 chr2D 79.503 161 23 8 3915 4069 372929902 372929746 1.310000e-18 106.0
142 TraesCS7D01G118100 chr2D 92.857 42 1 2 7349 7388 13477841 13477800 1.040000e-04 60.2
143 TraesCS7D01G118100 chr4D 82.413 489 60 17 6623 7087 95865824 95866310 4.160000e-108 403.0
144 TraesCS7D01G118100 chr4D 85.359 362 35 4 5388 5747 95865222 95865567 9.130000e-95 359.0
145 TraesCS7D01G118100 chr4D 80.992 242 29 6 5135 5370 95864894 95865124 9.870000e-40 176.0
146 TraesCS7D01G118100 chr4D 83.007 153 23 3 4515 4666 394153595 394153445 1.680000e-27 135.0
147 TraesCS7D01G118100 chr4D 79.710 138 25 3 3905 4039 22952559 22952422 7.910000e-16 97.1
148 TraesCS7D01G118100 chr4D 83.036 112 14 3 4567 4673 301777264 301777153 7.910000e-16 97.1
149 TraesCS7D01G118100 chr4D 87.719 57 6 1 3911 3966 85007133 85007189 2.230000e-06 65.8
150 TraesCS7D01G118100 chr4D 84.615 65 9 1 3886 3950 170223693 170223756 8.020000e-06 63.9
151 TraesCS7D01G118100 chr1D 92.437 119 8 1 58 176 5016548 5016665 1.650000e-37 169.0
152 TraesCS7D01G118100 chr1D 90.400 125 11 1 53 177 116548462 116548339 7.690000e-36 163.0
153 TraesCS7D01G118100 chr1D 81.111 180 26 5 3880 4058 418194953 418195125 4.660000e-28 137.0
154 TraesCS7D01G118100 chr1D 89.024 82 8 1 7681 7762 133746743 133746823 6.110000e-17 100.0
155 TraesCS7D01G118100 chr1D 87.838 74 6 2 3880 3953 235674032 235674102 6.160000e-12 84.2
156 TraesCS7D01G118100 chr1D 95.833 48 1 1 8403 8449 254383424 254383471 1.030000e-09 76.8
157 TraesCS7D01G118100 chr1D 95.652 46 2 0 9102 9147 342873068 342873113 3.710000e-09 75.0
158 TraesCS7D01G118100 chr1D 100.000 39 0 0 9109 9147 35654227 35654189 1.330000e-08 73.1
159 TraesCS7D01G118100 chr6B 90.244 123 9 2 54 176 209590068 209590187 3.580000e-34 158.0
160 TraesCS7D01G118100 chr6B 83.648 159 20 5 3880 4033 222680057 222680214 2.780000e-30 145.0
161 TraesCS7D01G118100 chr6B 94.521 73 4 0 7692 7764 401488721 401488649 7.850000e-21 113.0
162 TraesCS7D01G118100 chr6D 83.333 174 23 5 3880 4048 124941254 124941426 1.290000e-33 156.0
163 TraesCS7D01G118100 chr6D 95.833 48 1 1 8403 8449 389247225 389247272 1.030000e-09 76.8
164 TraesCS7D01G118100 chr6D 88.679 53 5 1 3915 3966 81743014 81743066 8.020000e-06 63.9
165 TraesCS7D01G118100 chr6D 94.872 39 0 1 7351 7389 101714657 101714693 1.040000e-04 60.2
166 TraesCS7D01G118100 chr1A 86.207 145 16 4 34 177 445548148 445548007 4.630000e-33 154.0
167 TraesCS7D01G118100 chr1A 78.723 188 30 8 3880 4058 515547422 515547608 6.070000e-22 117.0
168 TraesCS7D01G118100 chr1A 80.263 152 27 3 3880 4029 201863225 201863375 2.820000e-20 111.0
169 TraesCS7D01G118100 chr1A 87.838 74 6 2 3880 3953 310254053 310253983 6.160000e-12 84.2
170 TraesCS7D01G118100 chr1A 95.833 48 1 1 8403 8449 526829210 526829163 1.030000e-09 76.8
171 TraesCS7D01G118100 chr1A 95.833 48 1 1 8403 8449 526833077 526833030 1.030000e-09 76.8
172 TraesCS7D01G118100 chr1A 95.652 46 2 0 9102 9147 442606677 442606722 3.710000e-09 75.0
173 TraesCS7D01G118100 chr1A 100.000 39 0 0 9109 9147 34409785 34409747 1.330000e-08 73.1
174 TraesCS7D01G118100 chr1A 97.222 36 1 0 1455 1490 174197949 174197914 2.880000e-05 62.1
175 TraesCS7D01G118100 chr1A 97.222 36 1 0 1455 1490 226709712 226709677 2.880000e-05 62.1
176 TraesCS7D01G118100 chr1B 81.111 180 26 5 3880 4058 565664554 565664726 4.660000e-28 137.0
177 TraesCS7D01G118100 chr1B 91.954 87 5 2 7677 7762 200788893 200788978 4.690000e-23 121.0
178 TraesCS7D01G118100 chr1B 92.771 83 6 0 7680 7762 548556366 548556448 4.690000e-23 121.0
179 TraesCS7D01G118100 chr1B 90.909 88 7 1 7676 7763 4036007 4036093 6.070000e-22 117.0
180 TraesCS7D01G118100 chr1B 81.884 138 23 2 3880 4015 245953844 245953981 2.180000e-21 115.0
181 TraesCS7D01G118100 chr1B 78.947 114 22 2 3923 4034 33466534 33466421 1.030000e-09 76.8
182 TraesCS7D01G118100 chr1B 100.000 39 0 0 9109 9147 54136164 54136126 1.330000e-08 73.1
183 TraesCS7D01G118100 chr2B 80.519 154 25 4 3880 4029 514855347 514855195 7.850000e-21 113.0
184 TraesCS7D01G118100 chr2B 86.905 84 4 7 9100 9179 198760063 198759983 4.760000e-13 87.9
185 TraesCS7D01G118100 chr2B 94.872 39 1 1 7350 7388 352706925 352706962 1.040000e-04 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G118100 chr7D 73106102 73115667 9565 False 17666.000000 17666 100.000000 1 9566 1 chr7D.!!$F1 9565
1 TraesCS7D01G118100 chr7A 77197265 77205926 8661 True 1534.714286 4458 91.295571 1 8933 7 chr7A.!!$R2 8932
2 TraesCS7D01G118100 chr7A 117151441 117152268 827 False 1199.000000 1199 92.721000 1539 2375 1 chr7A.!!$F1 836
3 TraesCS7D01G118100 chr7A 665802254 665803080 826 False 1177.000000 1177 92.243000 1539 2375 1 chr7A.!!$F2 836
4 TraesCS7D01G118100 chr7B 15037515 15039624 2109 True 3166.000000 3166 93.809000 2464 4574 1 chr7B.!!$R1 2110
5 TraesCS7D01G118100 chr7B 15300636 15308866 8230 True 1194.444444 3265 92.659889 938 9566 9 chr7B.!!$R15 8628
6 TraesCS7D01G118100 chr7B 15052448 15052966 518 True 863.000000 863 96.558000 1940 2462 1 chr7B.!!$R2 522
7 TraesCS7D01G118100 chr7B 15100262 15100916 654 True 837.000000 837 89.686000 7259 7923 1 chr7B.!!$R3 664
8 TraesCS7D01G118100 chr7B 15028746 15032523 3777 True 595.750000 1339 93.146250 4585 7116 4 chr7B.!!$R11 2531
9 TraesCS7D01G118100 chr7B 150063792 150064548 756 True 572.000000 671 96.277500 5842 6543 2 chr7B.!!$R16 701
10 TraesCS7D01G118100 chr7B 15020535 15022545 2010 True 518.750000 1053 91.707750 7103 9511 4 chr7B.!!$R10 2408
11 TraesCS7D01G118100 chr7B 15072091 15072793 702 True 435.000000 448 89.961000 8832 9510 2 chr7B.!!$R12 678
12 TraesCS7D01G118100 chr7B 15288807 15292479 3672 True 423.500000 532 88.452500 8189 9481 2 chr7B.!!$R14 1292
13 TraesCS7D01G118100 chr5A 409743498 409744325 827 True 1199.000000 1199 92.721000 1539 2375 1 chr5A.!!$R1 836
14 TraesCS7D01G118100 chr5A 281325400 281327562 2162 True 406.000000 573 96.017000 177 544 2 chr5A.!!$R6 367
15 TraesCS7D01G118100 chr6A 421292261 421293083 822 True 1197.000000 1197 92.806000 1543 2375 1 chr6A.!!$R1 832
16 TraesCS7D01G118100 chr2A 149628897 149629722 825 True 1184.000000 1184 92.464000 1539 2373 1 chr2A.!!$R1 834
17 TraesCS7D01G118100 chr2A 518823739 518824566 827 True 1182.000000 1182 92.363000 1539 2375 1 chr2A.!!$R2 836
18 TraesCS7D01G118100 chr2A 30680095 30680956 861 True 628.050000 1194 94.911500 1455 2375 2 chr2A.!!$R4 920
19 TraesCS7D01G118100 chr2A 8156879 8159601 2722 True 290.000000 392 81.916000 5138 7082 3 chr2A.!!$R3 1944
20 TraesCS7D01G118100 chr3A 201788210 201789036 826 True 1182.000000 1182 92.363000 1539 2375 1 chr3A.!!$R1 836
21 TraesCS7D01G118100 chr3A 644993212 644993926 714 True 427.500000 444 90.451500 5844 6622 2 chr3A.!!$R2 778
22 TraesCS7D01G118100 chr3A 698144532 698145237 705 True 427.500000 457 90.628000 5856 6623 2 chr3A.!!$R3 767
23 TraesCS7D01G118100 chr3A 84091586 84092841 1255 False 251.000000 326 80.132500 5135 7093 2 chr3A.!!$F5 1958
24 TraesCS7D01G118100 chr5B 672446416 672447185 769 True 828.000000 828 86.541000 5844 6612 1 chr5B.!!$R5 768
25 TraesCS7D01G118100 chr5B 672478767 672479534 767 True 821.000000 821 86.415000 5844 6612 1 chr5B.!!$R6 768
26 TraesCS7D01G118100 chr3D 254741907 254742667 760 True 429.000000 444 89.567000 5843 6624 2 chr3D.!!$R3 781
27 TraesCS7D01G118100 chrUn 67300259 67300787 528 True 462.000000 462 83.213000 6084 6612 1 chrUn.!!$R1 528
28 TraesCS7D01G118100 chrUn 67304866 67305394 528 False 462.000000 462 83.213000 6084 6612 1 chrUn.!!$F1 528
29 TraesCS7D01G118100 chr2D 643704448 643705055 607 False 440.000000 440 80.442000 6643 7254 1 chr2D.!!$F4 611
30 TraesCS7D01G118100 chr4D 95864894 95866310 1416 False 312.666667 403 82.921333 5135 7087 3 chr4D.!!$F3 1952

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
617 619 0.106519 GTGATGGGGAGGGGTTGATG 60.107 60.000 0.00 0.0 0.00 3.07 F
1380 1395 0.104120 TGGAAGCCATACGGTCGATG 59.896 55.000 0.00 0.0 33.28 3.84 F
1737 1754 0.112995 TTGTCAGGGCATGCTTCCTT 59.887 50.000 18.92 0.0 0.00 3.36 F
2617 2864 4.160642 TCTCCTGATCCATTCCATTGTG 57.839 45.455 0.00 0.0 0.00 3.33 F
3296 3551 1.271597 GGCCAAGACACTCAACATCCT 60.272 52.381 0.00 0.0 0.00 3.24 F
3842 4098 2.048603 GCCAGCTTGCTACCAAGGG 61.049 63.158 1.78 1.1 46.77 3.95 F
5052 5427 1.073125 TGTTCTCGCCCTCCAATTCAA 59.927 47.619 0.00 0.0 0.00 2.69 F
5309 5691 2.158519 AGAGCTAAGAGAGGCCTAGTCC 60.159 54.545 4.42 0.0 0.00 3.85 F
6782 12209 0.179020 AACAGCACACAAGCCAGCTA 60.179 50.000 0.00 0.0 35.19 3.32 F
7120 12595 0.034616 GATCCAAGCCTCCATCCTCG 59.965 60.000 0.00 0.0 0.00 4.63 F
7628 13169 0.035820 GTAATGGAACGCACTGGGGA 60.036 55.000 0.00 0.0 0.00 4.81 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1483 1499 0.567968 CTGATCTAACGCGCACGAAG 59.432 55.000 5.73 0.00 43.93 3.79 R
2941 3195 1.369321 GCGGGATGCTTCTCTAGGG 59.631 63.158 0.00 0.00 41.73 3.53 R
2942 3196 1.369321 GGCGGGATGCTTCTCTAGG 59.631 63.158 0.00 0.00 45.43 3.02 R
3817 4073 0.453390 GTAGCAAGCTGGCAATGGAC 59.547 55.000 17.28 1.08 35.83 4.02 R
4517 4890 1.405872 ACGCACGGGGTATCATCTAA 58.594 50.000 0.00 0.00 0.00 2.10 R
5836 9724 0.872388 CCAAACACACCCTAAGCGTC 59.128 55.000 0.00 0.00 0.00 5.19 R
6127 10027 0.456221 CGGTCGGCACTAAGTCATCT 59.544 55.000 0.00 0.00 0.00 2.90 R
7063 12530 0.829333 GCCTCTTCTCTCTGCCATGA 59.171 55.000 0.00 0.00 0.00 3.07 R
8427 14016 0.036388 AGCCGCGAATCCTCTTGAAA 60.036 50.000 8.23 0.00 0.00 2.69 R
8431 14020 0.179108 GTACAGCCGCGAATCCTCTT 60.179 55.000 8.23 0.00 0.00 2.85 R
9227 17442 0.317938 GTCTCGATAGCGCGGTGATT 60.318 55.000 23.02 5.41 37.46 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 5.705441 CAGTTAGCCATTCTTTTACTCACCA 59.295 40.000 0.00 0.00 0.00 4.17
44 45 6.206634 CAGTTAGCCATTCTTTTACTCACCAA 59.793 38.462 0.00 0.00 0.00 3.67
63 64 7.043565 TCACCAATCGTAAAAATAGTACTCCC 58.956 38.462 0.00 0.00 0.00 4.30
67 68 7.270047 CAATCGTAAAAATAGTACTCCCTCCA 58.730 38.462 0.00 0.00 0.00 3.86
74 75 2.544844 AGTACTCCCTCCATCCGAAA 57.455 50.000 0.00 0.00 0.00 3.46
118 119 5.614324 TGTATCTAGCACCAAGTTAGCAT 57.386 39.130 0.00 0.00 31.70 3.79
122 123 5.932619 TCTAGCACCAAGTTAGCATTAGA 57.067 39.130 0.00 0.00 31.70 2.10
144 145 9.547753 TTAGATACATCCATTTGAAAGACTAGC 57.452 33.333 0.00 0.00 0.00 3.42
307 309 6.618811 ACATGCATGATCTTGAGAGAAAAAC 58.381 36.000 32.75 0.00 35.07 2.43
480 482 7.969387 AATAAAATACTTACACAGCATTGCG 57.031 32.000 2.38 1.04 0.00 4.85
522 524 2.344521 AAAAAGACGGGTGCGGCAAC 62.345 55.000 10.14 10.14 0.00 4.17
573 575 3.371285 GCAAACTGAACCGAGAATAGTCC 59.629 47.826 0.00 0.00 0.00 3.85
574 576 3.889520 AACTGAACCGAGAATAGTCCC 57.110 47.619 0.00 0.00 0.00 4.46
575 577 1.749634 ACTGAACCGAGAATAGTCCCG 59.250 52.381 0.00 0.00 0.00 5.14
576 578 1.749634 CTGAACCGAGAATAGTCCCGT 59.250 52.381 0.00 0.00 0.00 5.28
577 579 1.747355 TGAACCGAGAATAGTCCCGTC 59.253 52.381 0.00 0.00 0.00 4.79
578 580 0.737219 AACCGAGAATAGTCCCGTCG 59.263 55.000 0.00 0.00 0.00 5.12
579 581 1.008767 CCGAGAATAGTCCCGTCGC 60.009 63.158 0.00 0.00 0.00 5.19
580 582 1.721664 CCGAGAATAGTCCCGTCGCA 61.722 60.000 0.00 0.00 0.00 5.10
581 583 0.317103 CGAGAATAGTCCCGTCGCAG 60.317 60.000 0.00 0.00 0.00 5.18
582 584 1.022735 GAGAATAGTCCCGTCGCAGA 58.977 55.000 0.00 0.00 0.00 4.26
594 596 3.967886 TCGCAGACTAAGGCATAGC 57.032 52.632 0.00 0.00 34.78 2.97
605 607 3.944476 GGCATAGCCTAGTGATGGG 57.056 57.895 0.00 0.00 46.69 4.00
606 608 0.326264 GGCATAGCCTAGTGATGGGG 59.674 60.000 0.00 0.00 46.69 4.96
607 609 1.352083 GCATAGCCTAGTGATGGGGA 58.648 55.000 0.00 0.00 0.00 4.81
608 610 1.277557 GCATAGCCTAGTGATGGGGAG 59.722 57.143 0.00 0.00 0.00 4.30
609 611 1.905215 CATAGCCTAGTGATGGGGAGG 59.095 57.143 0.00 0.00 0.00 4.30
610 612 0.191064 TAGCCTAGTGATGGGGAGGG 59.809 60.000 0.00 0.00 0.00 4.30
611 613 2.150051 GCCTAGTGATGGGGAGGGG 61.150 68.421 0.00 0.00 0.00 4.79
612 614 1.318380 CCTAGTGATGGGGAGGGGT 59.682 63.158 0.00 0.00 0.00 4.95
613 615 0.327576 CCTAGTGATGGGGAGGGGTT 60.328 60.000 0.00 0.00 0.00 4.11
614 616 0.839946 CTAGTGATGGGGAGGGGTTG 59.160 60.000 0.00 0.00 0.00 3.77
615 617 0.419865 TAGTGATGGGGAGGGGTTGA 59.580 55.000 0.00 0.00 0.00 3.18
616 618 0.253820 AGTGATGGGGAGGGGTTGAT 60.254 55.000 0.00 0.00 0.00 2.57
617 619 0.106519 GTGATGGGGAGGGGTTGATG 60.107 60.000 0.00 0.00 0.00 3.07
618 620 1.152673 GATGGGGAGGGGTTGATGC 60.153 63.158 0.00 0.00 0.00 3.91
619 621 2.647003 GATGGGGAGGGGTTGATGCC 62.647 65.000 0.00 0.00 0.00 4.40
620 622 3.023735 GGGGAGGGGTTGATGCCT 61.024 66.667 0.00 0.00 0.00 4.75
621 623 2.626467 GGGGAGGGGTTGATGCCTT 61.626 63.158 0.00 0.00 0.00 4.35
622 624 1.076705 GGGAGGGGTTGATGCCTTC 60.077 63.158 0.00 0.00 0.00 3.46
623 625 1.076705 GGAGGGGTTGATGCCTTCC 60.077 63.158 0.00 0.00 0.00 3.46
624 626 1.076705 GAGGGGTTGATGCCTTCCC 60.077 63.158 0.00 0.00 39.22 3.97
625 627 1.856873 AGGGGTTGATGCCTTCCCA 60.857 57.895 0.00 0.00 41.51 4.37
626 628 1.682344 GGGGTTGATGCCTTCCCAC 60.682 63.158 0.00 0.00 41.51 4.61
627 629 1.682344 GGGTTGATGCCTTCCCACC 60.682 63.158 0.00 0.00 39.68 4.61
628 630 1.682344 GGTTGATGCCTTCCCACCC 60.682 63.158 0.00 0.00 0.00 4.61
629 631 2.046285 GTTGATGCCTTCCCACCCG 61.046 63.158 0.00 0.00 0.00 5.28
630 632 2.534396 TTGATGCCTTCCCACCCGT 61.534 57.895 0.00 0.00 0.00 5.28
631 633 2.124695 GATGCCTTCCCACCCGTC 60.125 66.667 0.00 0.00 0.00 4.79
632 634 3.699134 GATGCCTTCCCACCCGTCC 62.699 68.421 0.00 0.00 0.00 4.79
634 636 4.410400 GCCTTCCCACCCGTCCAG 62.410 72.222 0.00 0.00 0.00 3.86
635 637 3.717294 CCTTCCCACCCGTCCAGG 61.717 72.222 0.00 0.00 40.63 4.45
636 638 2.928396 CTTCCCACCCGTCCAGGT 60.928 66.667 0.00 0.00 42.40 4.00
637 639 2.448931 TTCCCACCCGTCCAGGTT 60.449 61.111 0.00 0.00 38.39 3.50
638 640 2.465055 CTTCCCACCCGTCCAGGTTC 62.465 65.000 0.00 0.00 38.39 3.62
639 641 3.246112 CCCACCCGTCCAGGTTCA 61.246 66.667 0.00 0.00 38.39 3.18
640 642 2.824880 CCCACCCGTCCAGGTTCAA 61.825 63.158 0.00 0.00 38.39 2.69
641 643 1.302511 CCACCCGTCCAGGTTCAAG 60.303 63.158 0.00 0.00 38.39 3.02
642 644 1.302511 CACCCGTCCAGGTTCAAGG 60.303 63.158 0.00 0.00 38.39 3.61
643 645 2.359975 CCCGTCCAGGTTCAAGGC 60.360 66.667 0.00 0.00 38.74 4.35
644 646 2.429930 CCGTCCAGGTTCAAGGCA 59.570 61.111 0.00 0.00 34.51 4.75
645 647 1.002134 CCGTCCAGGTTCAAGGCAT 60.002 57.895 0.00 0.00 34.51 4.40
646 648 1.308069 CCGTCCAGGTTCAAGGCATG 61.308 60.000 0.00 0.00 34.51 4.06
647 649 1.308069 CGTCCAGGTTCAAGGCATGG 61.308 60.000 0.00 0.00 38.96 3.66
648 650 0.251341 GTCCAGGTTCAAGGCATGGT 60.251 55.000 0.00 0.00 38.73 3.55
649 651 1.004277 GTCCAGGTTCAAGGCATGGTA 59.996 52.381 0.00 0.00 38.73 3.25
650 652 1.004277 TCCAGGTTCAAGGCATGGTAC 59.996 52.381 0.00 0.00 38.73 3.34
651 653 1.004745 CCAGGTTCAAGGCATGGTACT 59.995 52.381 0.00 0.00 33.58 2.73
652 654 2.555227 CCAGGTTCAAGGCATGGTACTT 60.555 50.000 0.00 0.00 33.58 2.24
653 655 2.489329 CAGGTTCAAGGCATGGTACTTG 59.511 50.000 0.00 0.00 44.09 3.16
654 656 1.202348 GGTTCAAGGCATGGTACTTGC 59.798 52.381 11.43 11.43 42.82 4.01
655 657 1.885887 GTTCAAGGCATGGTACTTGCA 59.114 47.619 18.60 0.00 42.82 4.08
656 658 2.284754 TCAAGGCATGGTACTTGCAA 57.715 45.000 18.60 0.00 42.82 4.08
657 659 2.806434 TCAAGGCATGGTACTTGCAAT 58.194 42.857 18.60 7.66 42.82 3.56
658 660 3.164268 TCAAGGCATGGTACTTGCAATT 58.836 40.909 18.60 0.00 42.82 2.32
659 661 3.577848 TCAAGGCATGGTACTTGCAATTT 59.422 39.130 18.60 9.78 42.82 1.82
660 662 3.598019 AGGCATGGTACTTGCAATTTG 57.402 42.857 18.60 0.00 41.95 2.32
661 663 2.234414 AGGCATGGTACTTGCAATTTGG 59.766 45.455 18.60 0.00 41.95 3.28
662 664 2.620242 GCATGGTACTTGCAATTTGGG 58.380 47.619 14.01 0.00 39.90 4.12
663 665 2.028203 GCATGGTACTTGCAATTTGGGT 60.028 45.455 14.01 0.00 39.90 4.51
664 666 3.556843 GCATGGTACTTGCAATTTGGGTT 60.557 43.478 14.01 0.00 39.90 4.11
665 667 4.640364 CATGGTACTTGCAATTTGGGTTT 58.360 39.130 0.00 0.00 0.00 3.27
666 668 4.065321 TGGTACTTGCAATTTGGGTTTG 57.935 40.909 0.00 0.00 0.00 2.93
667 669 3.452627 TGGTACTTGCAATTTGGGTTTGT 59.547 39.130 0.00 0.00 0.00 2.83
668 670 4.080863 TGGTACTTGCAATTTGGGTTTGTT 60.081 37.500 0.00 0.00 0.00 2.83
669 671 4.272261 GGTACTTGCAATTTGGGTTTGTTG 59.728 41.667 0.00 0.00 0.00 3.33
670 672 2.682352 ACTTGCAATTTGGGTTTGTTGC 59.318 40.909 0.00 2.25 45.27 4.17
672 674 2.753989 GCAATTTGGGTTTGTTGCAC 57.246 45.000 4.26 0.00 44.63 4.57
673 675 1.333308 GCAATTTGGGTTTGTTGCACC 59.667 47.619 4.26 0.00 44.63 5.01
674 676 2.636830 CAATTTGGGTTTGTTGCACCA 58.363 42.857 0.00 0.00 35.80 4.17
675 677 3.012518 CAATTTGGGTTTGTTGCACCAA 58.987 40.909 0.00 0.00 40.94 3.67
676 678 3.574354 ATTTGGGTTTGTTGCACCAAT 57.426 38.095 0.00 0.00 42.09 3.16
677 679 3.356529 TTTGGGTTTGTTGCACCAATT 57.643 38.095 0.00 0.00 42.09 2.32
678 680 4.487714 TTTGGGTTTGTTGCACCAATTA 57.512 36.364 0.00 0.00 42.09 1.40
679 681 4.696479 TTGGGTTTGTTGCACCAATTAT 57.304 36.364 0.00 0.00 38.02 1.28
680 682 5.808366 TTGGGTTTGTTGCACCAATTATA 57.192 34.783 0.00 0.00 38.02 0.98
681 683 5.140747 TGGGTTTGTTGCACCAATTATAC 57.859 39.130 0.00 0.00 35.80 1.47
682 684 4.835615 TGGGTTTGTTGCACCAATTATACT 59.164 37.500 0.00 0.00 35.80 2.12
683 685 5.167845 GGGTTTGTTGCACCAATTATACTG 58.832 41.667 0.00 0.00 35.80 2.74
684 686 5.279256 GGGTTTGTTGCACCAATTATACTGT 60.279 40.000 0.00 0.00 35.80 3.55
685 687 6.071840 GGGTTTGTTGCACCAATTATACTGTA 60.072 38.462 0.00 0.00 35.80 2.74
686 688 7.027161 GGTTTGTTGCACCAATTATACTGTAG 58.973 38.462 0.00 0.00 34.04 2.74
687 689 6.751514 TTGTTGCACCAATTATACTGTAGG 57.248 37.500 0.00 0.00 0.00 3.18
688 690 5.189928 TGTTGCACCAATTATACTGTAGGG 58.810 41.667 0.00 0.00 0.00 3.53
689 691 4.431416 TGCACCAATTATACTGTAGGGG 57.569 45.455 0.00 0.00 0.00 4.79
690 692 3.783642 TGCACCAATTATACTGTAGGGGT 59.216 43.478 0.00 0.00 0.00 4.95
691 693 4.228666 TGCACCAATTATACTGTAGGGGTT 59.771 41.667 0.00 0.00 0.00 4.11
692 694 4.820173 GCACCAATTATACTGTAGGGGTTC 59.180 45.833 0.00 0.00 0.00 3.62
693 695 5.374071 CACCAATTATACTGTAGGGGTTCC 58.626 45.833 0.00 0.00 0.00 3.62
694 696 5.132144 CACCAATTATACTGTAGGGGTTCCT 59.868 44.000 0.00 0.00 46.96 3.36
695 697 5.734634 ACCAATTATACTGTAGGGGTTCCTT 59.265 40.000 0.00 0.00 41.56 3.36
696 698 6.218938 ACCAATTATACTGTAGGGGTTCCTTT 59.781 38.462 0.00 0.00 41.56 3.11
697 699 7.406739 ACCAATTATACTGTAGGGGTTCCTTTA 59.593 37.037 0.00 0.00 41.56 1.85
698 700 7.718314 CCAATTATACTGTAGGGGTTCCTTTAC 59.282 40.741 0.00 0.00 41.56 2.01
699 701 8.269317 CAATTATACTGTAGGGGTTCCTTTACA 58.731 37.037 0.00 0.00 41.56 2.41
700 702 5.952347 ATACTGTAGGGGTTCCTTTACAG 57.048 43.478 20.37 20.37 41.56 2.74
701 703 3.595021 ACTGTAGGGGTTCCTTTACAGT 58.405 45.455 21.18 21.18 43.11 3.55
702 704 3.581770 ACTGTAGGGGTTCCTTTACAGTC 59.418 47.826 21.18 0.00 43.74 3.51
703 705 3.838903 CTGTAGGGGTTCCTTTACAGTCT 59.161 47.826 16.94 0.00 41.56 3.24
704 706 4.237018 TGTAGGGGTTCCTTTACAGTCTT 58.763 43.478 0.00 0.00 41.56 3.01
705 707 4.661709 TGTAGGGGTTCCTTTACAGTCTTT 59.338 41.667 0.00 0.00 41.56 2.52
706 708 4.368565 AGGGGTTCCTTTACAGTCTTTC 57.631 45.455 0.00 0.00 41.56 2.62
707 709 3.981375 AGGGGTTCCTTTACAGTCTTTCT 59.019 43.478 0.00 0.00 41.56 2.52
708 710 5.160386 AGGGGTTCCTTTACAGTCTTTCTA 58.840 41.667 0.00 0.00 41.56 2.10
709 711 5.791141 AGGGGTTCCTTTACAGTCTTTCTAT 59.209 40.000 0.00 0.00 41.56 1.98
710 712 6.070136 AGGGGTTCCTTTACAGTCTTTCTATC 60.070 42.308 0.00 0.00 41.56 2.08
711 713 6.296259 GGGGTTCCTTTACAGTCTTTCTATCA 60.296 42.308 0.00 0.00 0.00 2.15
712 714 7.166167 GGGTTCCTTTACAGTCTTTCTATCAA 58.834 38.462 0.00 0.00 0.00 2.57
713 715 7.664318 GGGTTCCTTTACAGTCTTTCTATCAAA 59.336 37.037 0.00 0.00 0.00 2.69
714 716 9.063615 GGTTCCTTTACAGTCTTTCTATCAAAA 57.936 33.333 0.00 0.00 0.00 2.44
906 912 2.830370 GCGAAGGGCCCTTGATGG 60.830 66.667 41.94 25.91 36.26 3.51
948 954 2.816718 GCGCCTGGGTCCGTATAA 59.183 61.111 0.00 0.00 0.00 0.98
949 955 1.370064 GCGCCTGGGTCCGTATAAT 59.630 57.895 0.00 0.00 0.00 1.28
950 956 0.250166 GCGCCTGGGTCCGTATAATT 60.250 55.000 0.00 0.00 0.00 1.40
1265 1280 4.789075 CCGTACCTCCACGCCACG 62.789 72.222 0.00 0.00 40.59 4.94
1323 1338 3.203412 CCTCCTCGTCGTCCTCCG 61.203 72.222 0.00 0.00 38.13 4.63
1335 1350 1.202533 CGTCCTCCGCATCCAGTAATT 60.203 52.381 0.00 0.00 0.00 1.40
1349 1364 3.135530 CCAGTAATTCCCTCTCCCTTCAG 59.864 52.174 0.00 0.00 0.00 3.02
1380 1395 0.104120 TGGAAGCCATACGGTCGATG 59.896 55.000 0.00 0.00 33.28 3.84
1387 1402 1.760875 ATACGGTCGATGGGTGCCT 60.761 57.895 0.00 0.00 0.00 4.75
1483 1499 0.452184 TCGATCGAACTGAGAGTGGC 59.548 55.000 16.99 0.00 0.00 5.01
1522 1538 5.734720 TCAGCGGATCTCTTATTTGAGTTT 58.265 37.500 0.00 0.00 35.68 2.66
1541 1557 5.583932 AGTTTTGATTTAAGAGGCCCTGAT 58.416 37.500 0.00 0.00 0.00 2.90
1560 1576 5.119931 TGATTGGAAAGTGGAATTGAACG 57.880 39.130 0.00 0.00 0.00 3.95
1576 1592 4.451629 TGAACGATCTAGACCTGAAACC 57.548 45.455 0.00 0.00 0.00 3.27
1577 1593 3.194968 TGAACGATCTAGACCTGAAACCC 59.805 47.826 0.00 0.00 0.00 4.11
1609 1626 4.170468 ACCTGAGTTTGTCATTGGACTT 57.830 40.909 0.00 0.00 44.61 3.01
1616 1633 9.612620 CTGAGTTTGTCATTGGACTTTTATAAC 57.387 33.333 0.00 0.00 44.61 1.89
1631 1648 8.904099 ACTTTTATAACCCCTATCATTTCTCG 57.096 34.615 0.00 0.00 0.00 4.04
1665 1682 6.088085 GCATATGTGTGTGCTTAAACTTGTTC 59.912 38.462 4.29 0.00 39.16 3.18
1672 1689 4.024048 TGTGCTTAAACTTGTTCAGCTAGC 60.024 41.667 6.62 6.62 0.00 3.42
1685 1702 2.178580 CAGCTAGCAATTTCCCCCAAA 58.821 47.619 18.83 0.00 0.00 3.28
1697 1714 3.835478 TCCCCCAAATTGACCATTACA 57.165 42.857 0.00 0.00 0.00 2.41
1698 1715 4.344938 TCCCCCAAATTGACCATTACAT 57.655 40.909 0.00 0.00 0.00 2.29
1737 1754 0.112995 TTGTCAGGGCATGCTTCCTT 59.887 50.000 18.92 0.00 0.00 3.36
1795 1812 4.286297 TGGGAGACATTGGTTAGACTTG 57.714 45.455 0.00 0.00 0.00 3.16
1844 1944 8.283291 GTGCCTGCTTGTATATATTTTACTGTC 58.717 37.037 0.00 0.00 0.00 3.51
1848 1948 8.072238 TGCTTGTATATATTTTACTGTCGCTG 57.928 34.615 0.00 0.00 0.00 5.18
1849 1949 7.709182 TGCTTGTATATATTTTACTGTCGCTGT 59.291 33.333 0.00 0.00 0.00 4.40
2217 2318 6.818644 ACATCAACATACTACCATGAGTGTTC 59.181 38.462 0.00 0.00 0.00 3.18
2218 2319 6.353404 TCAACATACTACCATGAGTGTTCA 57.647 37.500 0.00 0.00 37.81 3.18
2219 2320 6.163476 TCAACATACTACCATGAGTGTTCAC 58.837 40.000 0.00 0.00 35.83 3.18
2499 2743 6.009115 CCGCTGATTAGTTTTAGTGGTTTT 57.991 37.500 0.00 0.00 36.36 2.43
2502 2746 7.360361 CGCTGATTAGTTTTAGTGGTTTTTCT 58.640 34.615 0.00 0.00 0.00 2.52
2617 2864 4.160642 TCTCCTGATCCATTCCATTGTG 57.839 45.455 0.00 0.00 0.00 3.33
2874 3128 9.436866 TGGTGTGATAGTTAATAGTATGGGTTA 57.563 33.333 0.00 0.00 0.00 2.85
2941 3195 8.950210 TCAAAACTCATCCTATTCTGTTCATTC 58.050 33.333 0.00 0.00 0.00 2.67
2942 3196 7.872113 AAACTCATCCTATTCTGTTCATTCC 57.128 36.000 0.00 0.00 0.00 3.01
3045 3299 4.932911 TTTTATTTACCCTTCCCCTCGT 57.067 40.909 0.00 0.00 0.00 4.18
3047 3301 6.385766 TTTTATTTACCCTTCCCCTCGTAA 57.614 37.500 0.00 0.00 0.00 3.18
3296 3551 1.271597 GGCCAAGACACTCAACATCCT 60.272 52.381 0.00 0.00 0.00 3.24
3460 3715 7.724061 TCTTTTTATGCCCTTTTCTGTTAGACT 59.276 33.333 0.00 0.00 0.00 3.24
3526 3782 7.539712 TTGGATTTTCTATTAGCTCGAACTG 57.460 36.000 0.00 0.00 0.00 3.16
3633 3889 7.499895 ACCTTGAAAATTGCAAGAAAATCATGT 59.500 29.630 15.06 0.00 44.16 3.21
3817 4073 2.370281 ATGTAGTGAAGTCCGTGCTG 57.630 50.000 0.00 0.00 0.00 4.41
3842 4098 2.048603 GCCAGCTTGCTACCAAGGG 61.049 63.158 1.78 1.10 46.77 3.95
3855 4111 3.595190 ACCAAGGGTCTGCTACTTTTT 57.405 42.857 0.00 0.00 0.00 1.94
3856 4112 4.717279 ACCAAGGGTCTGCTACTTTTTA 57.283 40.909 0.00 0.00 0.00 1.52
3858 4114 5.641155 ACCAAGGGTCTGCTACTTTTTATT 58.359 37.500 0.00 0.00 0.00 1.40
4203 4569 8.511465 TTGAAGTCTTTAGTGTAATCGTGTAC 57.489 34.615 0.00 0.00 0.00 2.90
4278 4644 4.382147 GGAGATCCACTTGTGGAGAAGTAC 60.382 50.000 24.22 13.23 41.88 2.73
4499 4865 6.112734 CCAATCACATAGGTACAAACAGCTA 58.887 40.000 0.00 0.00 33.34 3.32
4762 5135 4.320870 TGAGGTTAGGCTAAAAGGTTTCG 58.679 43.478 8.86 0.00 0.00 3.46
4771 5144 5.350640 AGGCTAAAAGGTTTCGATTTCGTAG 59.649 40.000 0.00 0.00 40.80 3.51
4796 5169 9.334947 AGTATCATCTCAACCAATTAGATGTTG 57.665 33.333 12.65 8.33 44.50 3.33
4855 5229 7.621428 ATCACACATTTACAGATTTCCTGAG 57.379 36.000 0.00 0.00 45.78 3.35
4915 5289 9.487790 TCGATATTCTGTGCATGTATATGAAAA 57.512 29.630 3.28 0.00 36.36 2.29
5052 5427 1.073125 TGTTCTCGCCCTCCAATTCAA 59.927 47.619 0.00 0.00 0.00 2.69
5185 5561 5.512753 TGAGCTTTGCTGACAAAACAATA 57.487 34.783 0.00 0.00 44.90 1.90
5309 5691 2.158519 AGAGCTAAGAGAGGCCTAGTCC 60.159 54.545 4.42 0.00 0.00 3.85
5542 6208 9.394477 GTCACTACTTGTTGATTTAAATGTTCC 57.606 33.333 5.17 0.00 0.00 3.62
5615 6281 2.644798 AGGTAGGCTCAACCAATTCAGT 59.355 45.455 9.08 0.00 43.14 3.41
5624 6294 6.351286 GGCTCAACCAATTCAGTATTTTCCAT 60.351 38.462 0.00 0.00 38.86 3.41
5637 6307 7.177216 TCAGTATTTTCCATGTGAAGCAAGATT 59.823 33.333 0.00 0.00 33.63 2.40
5836 9724 6.607689 TGGAGAAACTGCATAAAACATTACG 58.392 36.000 0.00 0.00 0.00 3.18
5840 9728 3.998522 ACTGCATAAAACATTACGACGC 58.001 40.909 0.00 0.00 0.00 5.19
6127 10027 2.342279 GGCCAGAGTACACGCACA 59.658 61.111 0.00 0.00 0.00 4.57
6192 10111 4.020662 GCTCCCGATCTCTTCCAGATATTT 60.021 45.833 0.00 0.00 42.48 1.40
6296 10283 5.482163 TGGATCACAACAGATAACTCACA 57.518 39.130 0.00 0.00 0.00 3.58
6598 11274 4.329462 TTTGGAATACTGTGGTTTTGCC 57.671 40.909 0.00 0.00 37.90 4.52
6659 11335 5.581085 GGAATACTTCATAGTTTCACACGCT 59.419 40.000 0.00 0.00 35.78 5.07
6730 12157 7.227314 CCAAGATGACATTGTGCTAGCTTATTA 59.773 37.037 17.23 0.00 0.00 0.98
6739 12166 9.661187 CATTGTGCTAGCTTATTATTTCTGAAG 57.339 33.333 17.23 0.00 0.00 3.02
6758 12185 7.851228 TCTGAAGCTCTTCCTAATAATGTTGA 58.149 34.615 7.12 0.00 38.77 3.18
6782 12209 0.179020 AACAGCACACAAGCCAGCTA 60.179 50.000 0.00 0.00 35.19 3.32
6783 12210 0.179020 ACAGCACACAAGCCAGCTAA 60.179 50.000 0.00 0.00 35.19 3.09
6784 12211 0.239347 CAGCACACAAGCCAGCTAAC 59.761 55.000 0.00 0.00 35.19 2.34
6785 12212 0.890996 AGCACACAAGCCAGCTAACC 60.891 55.000 0.00 0.00 35.19 2.85
6978 12424 3.279434 CCCTACTTTGGTTACCATCAGC 58.721 50.000 4.38 0.00 31.53 4.26
6979 12425 3.054361 CCCTACTTTGGTTACCATCAGCT 60.054 47.826 4.38 0.00 31.53 4.24
6980 12426 3.941483 CCTACTTTGGTTACCATCAGCTG 59.059 47.826 7.63 7.63 31.53 4.24
6981 12427 3.508845 ACTTTGGTTACCATCAGCTGT 57.491 42.857 14.67 0.00 31.53 4.40
6982 12428 4.634012 ACTTTGGTTACCATCAGCTGTA 57.366 40.909 14.67 0.48 31.53 2.74
6983 12429 4.579869 ACTTTGGTTACCATCAGCTGTAG 58.420 43.478 14.67 7.39 31.53 2.74
6984 12430 2.691409 TGGTTACCATCAGCTGTAGC 57.309 50.000 14.67 0.33 42.49 3.58
7032 12499 1.001641 GTGGCAGCACCTTCAGGAT 60.002 57.895 0.00 0.00 40.22 3.24
7103 12578 1.929494 TCCAATTGGGGTTAGCAGGAT 59.071 47.619 24.29 0.00 37.22 3.24
7120 12595 0.034616 GATCCAAGCCTCCATCCTCG 59.965 60.000 0.00 0.00 0.00 4.63
7221 12696 1.221840 CAAGATGGGCGCACCTAGT 59.778 57.895 7.46 0.00 41.11 2.57
7230 12705 2.124942 GCACCTAGTCTGCAGGGC 60.125 66.667 15.13 7.50 37.51 5.19
7264 12797 3.304996 CCATATGTGTGCGTTGAAACCAA 60.305 43.478 1.24 0.00 0.00 3.67
7268 12801 0.375454 TGTGCGTTGAAACCAACTCG 59.625 50.000 6.71 0.00 41.20 4.18
7296 12830 1.953686 CAATTCAACAACGGGTGGTCT 59.046 47.619 0.00 0.00 0.00 3.85
7408 12942 1.988406 GGGAGGTAAGGACTGCGGT 60.988 63.158 0.00 0.00 0.00 5.68
7421 12955 3.692406 GCGGTTCCACGGGAGTCT 61.692 66.667 0.00 0.00 44.67 3.24
7547 13085 1.986210 CGTTCGGGTAGGGAGGGTT 60.986 63.158 0.00 0.00 0.00 4.11
7555 13093 1.558294 GGTAGGGAGGGTTAGTGGTTG 59.442 57.143 0.00 0.00 0.00 3.77
7568 13106 1.098712 GTGGTTGACGGCTGGAAACA 61.099 55.000 12.88 4.43 39.59 2.83
7625 13166 1.086696 CTGGTAATGGAACGCACTGG 58.913 55.000 0.00 0.00 0.00 4.00
7628 13169 0.035820 GTAATGGAACGCACTGGGGA 60.036 55.000 0.00 0.00 0.00 4.81
7631 13172 1.903877 ATGGAACGCACTGGGGAGAG 61.904 60.000 0.00 0.00 0.00 3.20
7634 13175 2.232298 GAACGCACTGGGGAGAGGAG 62.232 65.000 0.00 0.00 0.00 3.69
7681 13222 0.388649 GAACGCACTGAGGTGACGAT 60.389 55.000 15.33 7.36 45.61 3.73
7686 13227 0.318441 CACTGAGGTGACGATGTGGT 59.682 55.000 0.00 0.00 45.61 4.16
7731 13272 6.200100 GCTGCATGTGAAGAGAAATAAGATG 58.800 40.000 0.00 0.00 0.00 2.90
7796 13355 3.952675 GTGTGTGCCAGTGCCACG 61.953 66.667 0.00 0.00 39.84 4.94
7815 13374 4.201851 CCACGCACTAATCAATTGGAGAAG 60.202 45.833 5.42 1.45 0.00 2.85
7975 13557 7.110155 AGAATAATTTCCGTTCTGGCTAAAGA 58.890 34.615 0.00 0.00 37.80 2.52
7983 13565 5.584649 TCCGTTCTGGCTAAAGATGTAAATG 59.415 40.000 0.00 0.00 37.80 2.32
8007 13589 2.821991 AGTTTAGCGAGCAACAGTCT 57.178 45.000 0.00 0.00 0.00 3.24
8008 13590 2.678324 AGTTTAGCGAGCAACAGTCTC 58.322 47.619 0.00 0.00 0.00 3.36
8064 13646 7.588854 GTGTTATGTCCATCATTCATTCAATCG 59.411 37.037 0.00 0.00 37.91 3.34
8066 13648 8.509690 GTTATGTCCATCATTCATTCAATCGAT 58.490 33.333 0.00 0.00 37.91 3.59
8109 13691 5.300034 TGCCCTTTTATCTTCTGTATGCATG 59.700 40.000 10.16 0.00 0.00 4.06
8110 13692 5.300286 GCCCTTTTATCTTCTGTATGCATGT 59.700 40.000 10.16 0.00 0.00 3.21
8111 13693 6.486657 GCCCTTTTATCTTCTGTATGCATGTA 59.513 38.462 10.16 0.00 0.00 2.29
8140 13722 7.333174 ACAATTTTGTCCTGACGTTTCATTTTT 59.667 29.630 0.00 0.00 36.50 1.94
8214 13798 2.291741 GCAGGTGAAGGAGTTTGTGAAG 59.708 50.000 0.00 0.00 0.00 3.02
8361 13945 3.898517 TTCTCGTCTCCGCATATGTAG 57.101 47.619 4.29 0.39 0.00 2.74
8402 13991 4.703897 TCTAGCCAACATTATGCCTACAC 58.296 43.478 0.00 0.00 0.00 2.90
8403 13992 2.654863 AGCCAACATTATGCCTACACC 58.345 47.619 0.00 0.00 0.00 4.16
8404 13993 1.333619 GCCAACATTATGCCTACACCG 59.666 52.381 0.00 0.00 0.00 4.94
8405 13994 1.333619 CCAACATTATGCCTACACCGC 59.666 52.381 0.00 0.00 0.00 5.68
8406 13995 1.003972 CAACATTATGCCTACACCGCG 60.004 52.381 0.00 0.00 0.00 6.46
8407 13996 0.177141 ACATTATGCCTACACCGCGT 59.823 50.000 4.92 0.00 0.00 6.01
8408 13997 1.295792 CATTATGCCTACACCGCGTT 58.704 50.000 4.92 0.00 0.00 4.84
8409 13998 1.260561 CATTATGCCTACACCGCGTTC 59.739 52.381 4.92 0.00 0.00 3.95
8410 13999 0.460635 TTATGCCTACACCGCGTTCC 60.461 55.000 4.92 0.00 0.00 3.62
8411 14000 1.324740 TATGCCTACACCGCGTTCCT 61.325 55.000 4.92 0.00 0.00 3.36
8412 14001 2.813908 GCCTACACCGCGTTCCTG 60.814 66.667 4.92 0.00 0.00 3.86
8413 14002 2.967397 CCTACACCGCGTTCCTGA 59.033 61.111 4.92 0.00 0.00 3.86
8414 14003 1.153823 CCTACACCGCGTTCCTGAG 60.154 63.158 4.92 0.00 0.00 3.35
8415 14004 1.153823 CTACACCGCGTTCCTGAGG 60.154 63.158 4.92 0.00 34.62 3.86
8416 14005 2.558554 CTACACCGCGTTCCTGAGGG 62.559 65.000 4.92 0.00 32.43 4.30
8433 14022 3.256281 GGCACCCCTCTCTTTCAAG 57.744 57.895 0.00 0.00 0.00 3.02
8434 14023 0.693049 GGCACCCCTCTCTTTCAAGA 59.307 55.000 0.00 0.00 0.00 3.02
8444 14033 1.929836 CTCTTTCAAGAGGATTCGCGG 59.070 52.381 6.13 0.00 46.88 6.46
8477 14066 5.160607 TGTAACTTGTAATGGAGTCTGGG 57.839 43.478 0.00 0.00 0.00 4.45
8504 14093 1.300156 GTGTGTCTGTCAGCTGCGA 60.300 57.895 9.47 2.26 0.00 5.10
8505 14094 1.300156 TGTGTCTGTCAGCTGCGAC 60.300 57.895 9.47 15.09 36.40 5.19
8518 14141 2.824041 GCGACGGCCATGATTGGT 60.824 61.111 2.24 0.00 45.57 3.67
8524 14147 1.802636 GGCCATGATTGGTGTGTCG 59.197 57.895 0.00 0.00 45.57 4.35
8526 14149 1.308069 GCCATGATTGGTGTGTCGCT 61.308 55.000 0.00 0.00 45.57 4.93
8529 14152 3.727726 CCATGATTGGTGTGTCGCTATA 58.272 45.455 0.00 0.00 38.30 1.31
8555 14178 6.961359 TCATCACAGTACGTTATTTTCCAG 57.039 37.500 0.00 0.00 0.00 3.86
8574 14210 6.048732 TCCAGATGTGTGTGTATGTATTGT 57.951 37.500 0.00 0.00 0.00 2.71
8593 14229 2.069273 GTTGTGAAGATCTCGTGTGGG 58.931 52.381 0.00 0.00 0.00 4.61
8599 14235 1.187087 AGATCTCGTGTGGGACTTCC 58.813 55.000 0.00 0.00 0.00 3.46
8602 14238 1.374758 CTCGTGTGGGACTTCCTGC 60.375 63.158 0.00 0.00 36.20 4.85
8606 14242 1.770110 TGTGGGACTTCCTGCCAGT 60.770 57.895 0.00 0.00 42.04 4.00
8608 14244 2.352805 GGGACTTCCTGCCAGTGG 59.647 66.667 4.20 4.20 35.95 4.00
8616 14252 0.840288 TCCTGCCAGTGGGAAGCTTA 60.840 55.000 12.15 0.00 38.72 3.09
8623 14259 2.173356 CCAGTGGGAAGCTTATCATCCA 59.827 50.000 0.00 0.00 34.30 3.41
8625 14261 2.441001 AGTGGGAAGCTTATCATCCAGG 59.559 50.000 0.00 0.00 34.30 4.45
8628 14264 1.423161 GGAAGCTTATCATCCAGGCCT 59.577 52.381 0.00 0.00 32.91 5.19
8629 14265 2.502295 GAAGCTTATCATCCAGGCCTG 58.498 52.381 26.87 26.87 0.00 4.85
8631 14267 0.179009 GCTTATCATCCAGGCCTGCA 60.179 55.000 28.39 14.72 0.00 4.41
8654 14290 3.736224 CCACCCTGCCAGCTCCAT 61.736 66.667 0.00 0.00 0.00 3.41
8660 14296 1.318158 CCTGCCAGCTCCATGGAAAC 61.318 60.000 17.00 11.10 43.57 2.78
8662 14298 3.056313 GCCAGCTCCATGGAAACGC 62.056 63.158 17.00 15.87 43.57 4.84
8670 14306 0.251916 CCATGGAAACGCTAGGACCA 59.748 55.000 5.56 0.00 35.09 4.02
8685 14337 5.509840 GCTAGGACCAAGGACTACATGTATG 60.510 48.000 5.91 1.15 0.00 2.39
8686 14338 4.362677 AGGACCAAGGACTACATGTATGT 58.637 43.478 5.91 6.83 44.48 2.29
8688 14340 6.143915 AGGACCAAGGACTACATGTATGTAT 58.856 40.000 5.91 0.00 41.92 2.29
8724 14394 2.223157 CGACGTGCTTCCAAAACAGAAA 60.223 45.455 0.00 0.00 0.00 2.52
8733 14403 4.686191 TCCAAAACAGAAATGCACCATT 57.314 36.364 0.00 0.00 35.39 3.16
8735 14405 3.499157 CCAAAACAGAAATGCACCATTGG 59.501 43.478 0.00 0.00 34.04 3.16
8739 14409 2.762327 ACAGAAATGCACCATTGGATCC 59.238 45.455 10.37 4.20 34.04 3.36
8740 14410 2.026641 AGAAATGCACCATTGGATCCG 58.973 47.619 10.37 0.00 34.04 4.18
8741 14411 1.067516 GAAATGCACCATTGGATCCGG 59.932 52.381 10.37 4.84 34.04 5.14
8764 14434 0.929984 TGGCCTAACCATATGCCCAA 59.070 50.000 3.32 0.00 46.36 4.12
8777 14447 2.361610 CCCAATGCGGACCAAGCT 60.362 61.111 0.00 0.00 36.56 3.74
8805 14488 8.443953 ACAAGCAAATTTCTCTGGAGATATAC 57.556 34.615 0.88 0.00 37.29 1.47
8806 14489 7.225538 ACAAGCAAATTTCTCTGGAGATATACG 59.774 37.037 0.88 0.00 37.29 3.06
8810 16948 7.516481 CAAATTTCTCTGGAGATATACGCATG 58.484 38.462 0.88 0.00 37.29 4.06
8818 16956 4.021192 TGGAGATATACGCATGCATCTTCA 60.021 41.667 18.31 18.31 31.89 3.02
8821 16959 6.272822 AGATATACGCATGCATCTTCAGTA 57.727 37.500 19.57 10.01 0.00 2.74
8827 16965 3.603173 CGCATGCATCTTCAGTAACGATG 60.603 47.826 19.57 0.00 38.02 3.84
8830 16968 5.557136 GCATGCATCTTCAGTAACGATGTAC 60.557 44.000 14.21 0.00 37.46 2.90
8855 16993 2.032799 TGCAGTTTCGAAACGCAGATTT 59.967 40.909 34.78 18.66 43.51 2.17
8879 17017 1.669265 TCGATCAGTACGAGACGCAAT 59.331 47.619 0.00 0.00 34.85 3.56
9213 17428 5.619220 CCTACTTCATAGGTAGGTACGAGT 58.381 45.833 10.68 0.00 46.60 4.18
9214 17429 6.763355 CCTACTTCATAGGTAGGTACGAGTA 58.237 44.000 10.68 0.00 46.60 2.59
9215 17430 6.873076 CCTACTTCATAGGTAGGTACGAGTAG 59.127 46.154 10.68 0.00 46.60 2.57
9216 17431 5.619220 ACTTCATAGGTAGGTACGAGTAGG 58.381 45.833 0.00 0.00 0.00 3.18
9219 17434 6.352016 TCATAGGTAGGTACGAGTAGGTAG 57.648 45.833 0.00 0.00 0.00 3.18
9220 17435 3.483808 AGGTAGGTACGAGTAGGTAGC 57.516 52.381 0.00 0.00 40.32 3.58
9222 17437 4.227197 AGGTAGGTACGAGTAGGTAGCTA 58.773 47.826 7.37 7.37 46.25 3.32
9224 17439 3.104843 AGGTACGAGTAGGTAGCTACG 57.895 52.381 22.76 16.09 46.25 3.51
9225 17440 1.529012 GGTACGAGTAGGTAGCTACGC 59.471 57.143 22.76 22.14 37.77 4.42
9226 17441 2.478831 GTACGAGTAGGTAGCTACGCT 58.521 52.381 26.23 16.66 43.41 5.07
9227 17442 2.898729 ACGAGTAGGTAGCTACGCTA 57.101 50.000 26.23 15.74 40.44 4.26
9228 17443 3.185246 ACGAGTAGGTAGCTACGCTAA 57.815 47.619 26.23 0.20 43.07 3.09
9229 17444 3.737850 ACGAGTAGGTAGCTACGCTAAT 58.262 45.455 26.23 17.13 43.07 1.73
9231 17446 3.744942 CGAGTAGGTAGCTACGCTAATCA 59.255 47.826 28.84 11.56 43.07 2.57
9242 17457 1.665544 CGCTAATCACCGCGCTATCG 61.666 60.000 5.56 0.00 43.01 2.92
9245 17460 1.197036 CTAATCACCGCGCTATCGAGA 59.803 52.381 5.56 0.00 37.73 4.04
9248 17463 1.655654 CACCGCGCTATCGAGACAG 60.656 63.158 5.56 0.00 37.73 3.51
9475 17693 1.152989 GCAGATGAAGGAGCTCAGCG 61.153 60.000 17.19 0.00 36.83 5.18
9511 17729 2.332654 GGCGGCACCAGTGGTAAAG 61.333 63.158 16.22 9.98 38.86 1.85
9512 17730 2.332654 GCGGCACCAGTGGTAAAGG 61.333 63.158 16.22 3.43 32.11 3.11
9513 17731 1.373435 CGGCACCAGTGGTAAAGGA 59.627 57.895 16.22 0.00 32.11 3.36
9515 17733 1.816183 CGGCACCAGTGGTAAAGGAAA 60.816 52.381 16.22 0.00 32.11 3.13
9516 17734 2.312390 GGCACCAGTGGTAAAGGAAAA 58.688 47.619 16.22 0.00 32.11 2.29
9559 17777 3.740115 AGTAGTGCACGGTCTGAATTTT 58.260 40.909 12.01 0.00 0.00 1.82
9560 17778 3.746492 AGTAGTGCACGGTCTGAATTTTC 59.254 43.478 12.01 0.00 0.00 2.29
9561 17779 2.851195 AGTGCACGGTCTGAATTTTCT 58.149 42.857 12.01 0.00 0.00 2.52
9562 17780 2.549754 AGTGCACGGTCTGAATTTTCTG 59.450 45.455 12.01 0.00 0.00 3.02
9564 17782 3.003275 GTGCACGGTCTGAATTTTCTGAA 59.997 43.478 0.00 0.00 36.99 3.02
9565 17783 3.820467 TGCACGGTCTGAATTTTCTGAAT 59.180 39.130 2.00 0.00 36.99 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 5.049167 TGGCTAACTGCAAACAAAAAGATG 58.951 37.500 0.00 0.00 45.15 2.90
11 12 4.935352 AGAATGGCTAACTGCAAACAAA 57.065 36.364 0.00 0.00 45.15 2.83
43 44 7.427989 TGGAGGGAGTACTATTTTTACGATT 57.572 36.000 0.00 0.00 0.00 3.34
44 45 7.256225 GGATGGAGGGAGTACTATTTTTACGAT 60.256 40.741 0.00 0.00 0.00 3.73
74 75 7.066307 ACATTTATTTGAGGGACAAGCTTTT 57.934 32.000 0.00 0.00 39.77 2.27
93 94 6.414732 TGCTAACTTGGTGCTAGATACATTT 58.585 36.000 0.00 0.00 0.00 2.32
115 116 8.844244 AGTCTTTCAAATGGATGTATCTAATGC 58.156 33.333 0.00 0.00 0.00 3.56
118 119 9.547753 GCTAGTCTTTCAAATGGATGTATCTAA 57.452 33.333 0.00 0.00 0.00 2.10
122 123 7.284034 CCAAGCTAGTCTTTCAAATGGATGTAT 59.716 37.037 0.00 0.00 31.27 2.29
162 163 4.150359 TGAAATATCTACTCCCTCCGTCC 58.850 47.826 0.00 0.00 0.00 4.79
307 309 1.386533 CCATTTGCAGGAGGCTAGTG 58.613 55.000 0.00 0.00 45.15 2.74
466 468 3.126171 GGTATTGACGCAATGCTGTGTAA 59.874 43.478 15.76 2.07 46.30 2.41
473 475 4.552166 ATGTTAGGTATTGACGCAATGC 57.448 40.909 13.17 11.81 35.54 3.56
522 524 4.633596 GATCATCGTTGGCGCGCG 62.634 66.667 28.44 28.44 38.14 6.86
564 566 0.739561 GTCTGCGACGGGACTATTCT 59.260 55.000 0.00 0.00 0.00 2.40
573 575 0.384309 TATGCCTTAGTCTGCGACGG 59.616 55.000 0.00 1.43 37.67 4.79
574 576 1.759994 CTATGCCTTAGTCTGCGACG 58.240 55.000 0.00 0.00 37.67 5.12
575 577 1.492720 GCTATGCCTTAGTCTGCGAC 58.507 55.000 0.00 1.15 0.00 5.19
576 578 0.389391 GGCTATGCCTTAGTCTGCGA 59.611 55.000 0.73 0.00 46.69 5.10
577 579 2.906047 GGCTATGCCTTAGTCTGCG 58.094 57.895 0.73 0.00 46.69 5.18
588 590 1.277557 CTCCCCATCACTAGGCTATGC 59.722 57.143 0.00 0.00 0.00 3.14
589 591 1.905215 CCTCCCCATCACTAGGCTATG 59.095 57.143 0.00 0.00 0.00 2.23
590 592 1.203364 CCCTCCCCATCACTAGGCTAT 60.203 57.143 0.00 0.00 0.00 2.97
591 593 0.191064 CCCTCCCCATCACTAGGCTA 59.809 60.000 0.00 0.00 0.00 3.93
592 594 1.074167 CCCTCCCCATCACTAGGCT 60.074 63.158 0.00 0.00 0.00 4.58
593 595 2.150051 CCCCTCCCCATCACTAGGC 61.150 68.421 0.00 0.00 0.00 3.93
594 596 0.327576 AACCCCTCCCCATCACTAGG 60.328 60.000 0.00 0.00 0.00 3.02
595 597 0.839946 CAACCCCTCCCCATCACTAG 59.160 60.000 0.00 0.00 0.00 2.57
596 598 0.419865 TCAACCCCTCCCCATCACTA 59.580 55.000 0.00 0.00 0.00 2.74
597 599 0.253820 ATCAACCCCTCCCCATCACT 60.254 55.000 0.00 0.00 0.00 3.41
598 600 0.106519 CATCAACCCCTCCCCATCAC 60.107 60.000 0.00 0.00 0.00 3.06
599 601 1.936767 GCATCAACCCCTCCCCATCA 61.937 60.000 0.00 0.00 0.00 3.07
600 602 1.152673 GCATCAACCCCTCCCCATC 60.153 63.158 0.00 0.00 0.00 3.51
601 603 2.704424 GGCATCAACCCCTCCCCAT 61.704 63.158 0.00 0.00 0.00 4.00
602 604 3.346734 GGCATCAACCCCTCCCCA 61.347 66.667 0.00 0.00 0.00 4.96
603 605 2.573893 GAAGGCATCAACCCCTCCCC 62.574 65.000 0.00 0.00 0.00 4.81
604 606 1.076705 GAAGGCATCAACCCCTCCC 60.077 63.158 0.00 0.00 0.00 4.30
605 607 1.076705 GGAAGGCATCAACCCCTCC 60.077 63.158 0.00 0.00 0.00 4.30
606 608 1.076705 GGGAAGGCATCAACCCCTC 60.077 63.158 0.00 0.00 36.65 4.30
607 609 1.856873 TGGGAAGGCATCAACCCCT 60.857 57.895 0.00 0.00 41.44 4.79
608 610 1.682344 GTGGGAAGGCATCAACCCC 60.682 63.158 0.00 0.00 41.44 4.95
609 611 1.682344 GGTGGGAAGGCATCAACCC 60.682 63.158 0.00 0.00 42.37 4.11
610 612 1.682344 GGGTGGGAAGGCATCAACC 60.682 63.158 5.53 5.53 36.20 3.77
611 613 2.046285 CGGGTGGGAAGGCATCAAC 61.046 63.158 0.00 0.00 0.00 3.18
612 614 2.354729 CGGGTGGGAAGGCATCAA 59.645 61.111 0.00 0.00 0.00 2.57
613 615 2.933287 ACGGGTGGGAAGGCATCA 60.933 61.111 0.00 0.00 0.00 3.07
614 616 2.124695 GACGGGTGGGAAGGCATC 60.125 66.667 0.00 0.00 0.00 3.91
615 617 3.728373 GGACGGGTGGGAAGGCAT 61.728 66.667 0.00 0.00 0.00 4.40
617 619 4.410400 CTGGACGGGTGGGAAGGC 62.410 72.222 0.00 0.00 0.00 4.35
618 620 3.717294 CCTGGACGGGTGGGAAGG 61.717 72.222 0.00 0.00 0.00 3.46
619 621 2.465055 GAACCTGGACGGGTGGGAAG 62.465 65.000 3.09 0.00 39.85 3.46
620 622 2.448931 AACCTGGACGGGTGGGAA 60.449 61.111 3.09 0.00 39.85 3.97
621 623 2.926242 GAACCTGGACGGGTGGGA 60.926 66.667 3.09 0.00 39.85 4.37
622 624 2.748058 CTTGAACCTGGACGGGTGGG 62.748 65.000 3.09 0.00 39.85 4.61
623 625 1.302511 CTTGAACCTGGACGGGTGG 60.303 63.158 3.09 0.00 39.85 4.61
624 626 1.302511 CCTTGAACCTGGACGGGTG 60.303 63.158 3.09 0.00 39.85 4.61
625 627 3.157680 CCTTGAACCTGGACGGGT 58.842 61.111 0.00 0.00 42.05 5.28
626 628 2.359975 GCCTTGAACCTGGACGGG 60.360 66.667 0.00 0.00 36.97 5.28
627 629 1.002134 ATGCCTTGAACCTGGACGG 60.002 57.895 0.00 0.00 39.35 4.79
628 630 1.308069 CCATGCCTTGAACCTGGACG 61.308 60.000 0.00 0.00 0.00 4.79
629 631 0.251341 ACCATGCCTTGAACCTGGAC 60.251 55.000 0.00 0.00 0.00 4.02
630 632 1.004277 GTACCATGCCTTGAACCTGGA 59.996 52.381 0.00 0.00 0.00 3.86
631 633 1.004745 AGTACCATGCCTTGAACCTGG 59.995 52.381 0.00 0.00 0.00 4.45
632 634 2.489329 CAAGTACCATGCCTTGAACCTG 59.511 50.000 10.72 0.00 40.36 4.00
633 635 2.795329 CAAGTACCATGCCTTGAACCT 58.205 47.619 10.72 0.00 40.36 3.50
634 636 1.202348 GCAAGTACCATGCCTTGAACC 59.798 52.381 17.22 2.20 40.36 3.62
635 637 1.885887 TGCAAGTACCATGCCTTGAAC 59.114 47.619 16.17 5.82 43.16 3.18
636 638 2.284754 TGCAAGTACCATGCCTTGAA 57.715 45.000 16.17 7.93 43.16 2.69
637 639 2.284754 TTGCAAGTACCATGCCTTGA 57.715 45.000 16.17 0.00 43.16 3.02
638 640 3.598019 AATTGCAAGTACCATGCCTTG 57.402 42.857 16.17 11.51 43.16 3.61
639 641 3.306919 CCAAATTGCAAGTACCATGCCTT 60.307 43.478 16.17 8.78 43.16 4.35
640 642 2.234414 CCAAATTGCAAGTACCATGCCT 59.766 45.455 16.17 3.91 43.16 4.75
641 643 2.620242 CCAAATTGCAAGTACCATGCC 58.380 47.619 16.17 2.49 43.16 4.40
642 644 2.028203 ACCCAAATTGCAAGTACCATGC 60.028 45.455 4.94 12.96 44.08 4.06
643 645 3.959535 ACCCAAATTGCAAGTACCATG 57.040 42.857 4.94 0.00 0.00 3.66
644 646 4.102367 ACAAACCCAAATTGCAAGTACCAT 59.898 37.500 4.94 0.00 0.00 3.55
645 647 3.452627 ACAAACCCAAATTGCAAGTACCA 59.547 39.130 4.94 0.00 0.00 3.25
646 648 4.066646 ACAAACCCAAATTGCAAGTACC 57.933 40.909 4.94 0.00 0.00 3.34
647 649 4.260579 GCAACAAACCCAAATTGCAAGTAC 60.261 41.667 4.94 0.00 45.38 2.73
648 650 3.873952 GCAACAAACCCAAATTGCAAGTA 59.126 39.130 4.94 0.00 45.38 2.24
649 651 2.682352 GCAACAAACCCAAATTGCAAGT 59.318 40.909 4.94 0.00 45.38 3.16
650 652 3.337301 GCAACAAACCCAAATTGCAAG 57.663 42.857 4.94 0.00 45.38 4.01
653 655 1.333308 GGTGCAACAAACCCAAATTGC 59.667 47.619 0.00 0.94 46.08 3.56
654 656 2.636830 TGGTGCAACAAACCCAAATTG 58.363 42.857 0.00 0.00 39.98 2.32
655 657 3.356529 TTGGTGCAACAAACCCAAATT 57.643 38.095 16.46 0.00 39.98 1.82
656 658 3.574354 ATTGGTGCAACAAACCCAAAT 57.426 38.095 23.14 0.00 40.16 2.32
657 659 3.356529 AATTGGTGCAACAAACCCAAA 57.643 38.095 23.14 0.00 40.16 3.28
658 660 4.696479 ATAATTGGTGCAACAAACCCAA 57.304 36.364 23.14 14.03 39.98 4.12
659 661 4.835615 AGTATAATTGGTGCAACAAACCCA 59.164 37.500 23.14 3.95 39.98 4.51
660 662 5.167845 CAGTATAATTGGTGCAACAAACCC 58.832 41.667 23.14 7.99 39.98 4.11
661 663 5.778862 ACAGTATAATTGGTGCAACAAACC 58.221 37.500 23.14 7.62 39.98 3.27
662 664 7.027161 CCTACAGTATAATTGGTGCAACAAAC 58.973 38.462 23.14 15.04 39.98 2.93
663 665 6.151985 CCCTACAGTATAATTGGTGCAACAAA 59.848 38.462 23.14 6.25 39.98 2.83
664 666 5.650266 CCCTACAGTATAATTGGTGCAACAA 59.350 40.000 21.46 21.46 39.98 2.83
665 667 5.189928 CCCTACAGTATAATTGGTGCAACA 58.810 41.667 0.00 0.00 39.98 3.33
666 668 4.578928 CCCCTACAGTATAATTGGTGCAAC 59.421 45.833 0.00 0.00 0.00 4.17
667 669 4.228666 ACCCCTACAGTATAATTGGTGCAA 59.771 41.667 0.00 0.00 0.00 4.08
668 670 3.783642 ACCCCTACAGTATAATTGGTGCA 59.216 43.478 0.00 0.00 0.00 4.57
669 671 4.432980 ACCCCTACAGTATAATTGGTGC 57.567 45.455 0.00 0.00 0.00 5.01
670 672 5.132144 AGGAACCCCTACAGTATAATTGGTG 59.868 44.000 0.00 0.00 42.15 4.17
671 673 5.294473 AGGAACCCCTACAGTATAATTGGT 58.706 41.667 0.00 0.00 42.15 3.67
672 674 5.906772 AGGAACCCCTACAGTATAATTGG 57.093 43.478 0.00 0.00 42.15 3.16
673 675 8.269317 TGTAAAGGAACCCCTACAGTATAATTG 58.731 37.037 0.00 0.00 43.48 2.32
674 676 8.396619 TGTAAAGGAACCCCTACAGTATAATT 57.603 34.615 0.00 0.00 43.48 1.40
675 677 8.030913 CTGTAAAGGAACCCCTACAGTATAAT 57.969 38.462 15.77 0.00 43.48 1.28
676 678 7.427989 CTGTAAAGGAACCCCTACAGTATAA 57.572 40.000 15.77 0.00 43.48 0.98
678 680 5.952347 CTGTAAAGGAACCCCTACAGTAT 57.048 43.478 15.77 0.00 43.48 2.12
681 683 3.838903 AGACTGTAAAGGAACCCCTACAG 59.161 47.826 19.50 19.50 46.99 2.74
682 684 3.865571 AGACTGTAAAGGAACCCCTACA 58.134 45.455 0.00 0.00 43.48 2.74
683 685 4.904895 AAGACTGTAAAGGAACCCCTAC 57.095 45.455 0.00 0.00 43.48 3.18
684 686 5.160386 AGAAAGACTGTAAAGGAACCCCTA 58.840 41.667 0.00 0.00 43.48 3.53
686 688 4.368565 AGAAAGACTGTAAAGGAACCCC 57.631 45.455 0.00 0.00 0.00 4.95
687 689 6.708285 TGATAGAAAGACTGTAAAGGAACCC 58.292 40.000 0.00 0.00 0.00 4.11
688 690 8.617290 TTTGATAGAAAGACTGTAAAGGAACC 57.383 34.615 0.00 0.00 0.00 3.62
716 718 0.036306 ATGAGCGGACGGGACTTTTT 59.964 50.000 0.00 0.00 0.00 1.94
717 719 0.899720 TATGAGCGGACGGGACTTTT 59.100 50.000 0.00 0.00 0.00 2.27
718 720 0.899720 TTATGAGCGGACGGGACTTT 59.100 50.000 0.00 0.00 0.00 2.66
719 721 1.120530 ATTATGAGCGGACGGGACTT 58.879 50.000 0.00 0.00 0.00 3.01
720 722 0.389391 CATTATGAGCGGACGGGACT 59.611 55.000 0.00 0.00 0.00 3.85
721 723 1.222115 GCATTATGAGCGGACGGGAC 61.222 60.000 0.00 0.00 0.00 4.46
722 724 1.069090 GCATTATGAGCGGACGGGA 59.931 57.895 0.00 0.00 0.00 5.14
723 725 1.961277 GGCATTATGAGCGGACGGG 60.961 63.158 0.00 0.00 0.00 5.28
798 800 1.209128 CCGTAGCGAGCCAATAACAG 58.791 55.000 0.00 0.00 0.00 3.16
848 850 1.228657 GCGACGTTTTCTCTTGCCCT 61.229 55.000 0.00 0.00 0.00 5.19
912 918 1.373748 GCGGTGCTGACGGTAAAGA 60.374 57.895 0.00 0.00 0.00 2.52
1076 1087 3.494254 GTGGTGGTGGTGGGGTCA 61.494 66.667 0.00 0.00 0.00 4.02
1304 1319 2.114051 GGAGGACGACGAGGAGGAC 61.114 68.421 0.00 0.00 0.00 3.85
1323 1338 2.224646 GGGAGAGGGAATTACTGGATGC 60.225 54.545 0.00 0.00 0.00 3.91
1335 1350 0.787084 ACAGACTGAAGGGAGAGGGA 59.213 55.000 10.08 0.00 0.00 4.20
1365 1380 1.760875 ACCCATCGACCGTATGGCT 60.761 57.895 0.00 0.00 42.24 4.75
1380 1395 2.917227 CCACCAACCAAGGCACCC 60.917 66.667 0.00 0.00 0.00 4.61
1387 1402 1.826054 CGAACAGCCCACCAACCAA 60.826 57.895 0.00 0.00 0.00 3.67
1483 1499 0.567968 CTGATCTAACGCGCACGAAG 59.432 55.000 5.73 0.00 43.93 3.79
1514 1530 5.838521 AGGGCCTCTTAAATCAAAACTCAAA 59.161 36.000 0.00 0.00 0.00 2.69
1522 1538 4.017591 TCCAATCAGGGCCTCTTAAATCAA 60.018 41.667 0.95 0.00 38.24 2.57
1541 1557 5.070001 AGATCGTTCAATTCCACTTTCCAA 58.930 37.500 0.00 0.00 0.00 3.53
1581 1597 7.227910 GTCCAATGACAAACTCAGGTAAAACTA 59.772 37.037 0.00 0.00 41.37 2.24
1616 1633 4.142227 CGGGTATACGAGAAATGATAGGGG 60.142 50.000 0.00 0.00 35.47 4.79
1631 1648 3.064207 CACACACATATGCCGGGTATAC 58.936 50.000 7.00 0.00 0.00 1.47
1636 1653 1.031571 AAGCACACACATATGCCGGG 61.032 55.000 2.18 0.00 43.12 5.73
1665 1682 1.851304 TTGGGGGAAATTGCTAGCTG 58.149 50.000 17.23 0.00 0.00 4.24
1697 1714 9.062524 TGACAAGCTAAATTAAGTTACACACAT 57.937 29.630 0.00 0.00 0.00 3.21
1698 1715 8.439993 TGACAAGCTAAATTAAGTTACACACA 57.560 30.769 0.00 0.00 0.00 3.72
1737 1754 1.065199 AGCATGAATCCCTTCTTCGCA 60.065 47.619 0.00 0.00 32.29 5.10
1795 1812 7.158021 CACTCCCTTCTCTGTATATCAATTCC 58.842 42.308 0.00 0.00 0.00 3.01
1844 1944 1.002366 GTTAGTCTGGCATGACAGCG 58.998 55.000 24.63 1.91 39.27 5.18
1848 1948 3.365364 GCAGTTTGTTAGTCTGGCATGAC 60.365 47.826 0.00 0.00 37.23 3.06
1849 1949 2.813754 GCAGTTTGTTAGTCTGGCATGA 59.186 45.455 0.00 0.00 0.00 3.07
2109 2210 5.239525 AGCAACACTCTTAACAATGGAGAAC 59.760 40.000 0.00 0.00 0.00 3.01
2217 2318 8.816640 AATAACTGGCAATAGAAAACAAAGTG 57.183 30.769 0.00 0.00 0.00 3.16
2218 2319 8.860088 AGAATAACTGGCAATAGAAAACAAAGT 58.140 29.630 0.00 0.00 0.00 2.66
2245 2346 7.259088 AGTACTATTTCTCACAATCCCAAGT 57.741 36.000 0.00 0.00 0.00 3.16
2520 2764 4.697756 CGGACCCACATGGCACGT 62.698 66.667 0.00 0.00 37.83 4.49
2617 2864 9.717942 ACCATCTATATTTCAATTAGTCTGCTC 57.282 33.333 0.00 0.00 0.00 4.26
2874 3128 4.096382 GTGAATCATGCCCTCGTACATTTT 59.904 41.667 0.00 0.00 0.00 1.82
2941 3195 1.369321 GCGGGATGCTTCTCTAGGG 59.631 63.158 0.00 0.00 41.73 3.53
2942 3196 1.369321 GGCGGGATGCTTCTCTAGG 59.631 63.158 0.00 0.00 45.43 3.02
3027 3281 3.384467 CGTTACGAGGGGAAGGGTAAATA 59.616 47.826 0.00 0.00 0.00 1.40
3044 3298 4.417506 GGTGCCAATTATCCAAACGTTAC 58.582 43.478 0.00 0.00 0.00 2.50
3045 3299 3.444388 GGGTGCCAATTATCCAAACGTTA 59.556 43.478 0.00 0.00 0.00 3.18
3047 3301 1.822371 GGGTGCCAATTATCCAAACGT 59.178 47.619 0.00 0.00 0.00 3.99
3460 3715 6.064060 ACATGAGAAAGTGGATTCAAGTTGA 58.936 36.000 0.08 0.08 0.00 3.18
3526 3782 4.219725 TGCTTAAGGTTAAAAGTGGCATCC 59.780 41.667 4.29 0.00 0.00 3.51
3554 3810 3.394836 GCCCCAGGCGAGTCTCTT 61.395 66.667 0.00 0.00 39.62 2.85
3633 3889 6.879367 AAACTAGCTTAACCAGTATACCCA 57.121 37.500 0.00 0.00 0.00 4.51
3672 3928 3.411446 TGGATAGAACAACAAGCACAGG 58.589 45.455 0.00 0.00 0.00 4.00
3710 3966 7.394016 TCTGCCATAGAGACAACTATTTCAAA 58.606 34.615 0.00 0.00 31.68 2.69
3817 4073 0.453390 GTAGCAAGCTGGCAATGGAC 59.547 55.000 17.28 1.08 35.83 4.02
4197 4563 6.780706 AAAACAAGTATTCAGAGGTACACG 57.219 37.500 0.00 0.00 0.00 4.49
4203 4569 8.624776 ACAGAAAGAAAAACAAGTATTCAGAGG 58.375 33.333 0.00 0.00 0.00 3.69
4278 4644 1.811558 CGTCCAAGCCCCATAGACATG 60.812 57.143 0.00 0.00 0.00 3.21
4415 4781 8.742777 AGTCACATAATACAGCAAATCATTGTT 58.257 29.630 0.00 0.00 38.85 2.83
4416 4782 8.186163 CAGTCACATAATACAGCAAATCATTGT 58.814 33.333 0.00 0.00 38.85 2.71
4422 4788 7.171508 CCGATACAGTCACATAATACAGCAAAT 59.828 37.037 0.00 0.00 0.00 2.32
4517 4890 1.405872 ACGCACGGGGTATCATCTAA 58.594 50.000 0.00 0.00 0.00 2.10
4762 5135 8.594881 ATTGGTTGAGATGATACTACGAAATC 57.405 34.615 0.00 0.00 0.00 2.17
4771 5144 9.330063 TCAACATCTAATTGGTTGAGATGATAC 57.670 33.333 17.95 0.00 46.31 2.24
4796 5169 5.163713 GGCCAAGATTGTAACATCTTCTGTC 60.164 44.000 0.00 0.00 36.98 3.51
4918 5292 9.674824 CAGAAAGAACATTTAATGATAGCCATC 57.325 33.333 12.28 1.84 33.53 3.51
5098 5473 9.736023 CCCAAATAGTTACTGATAGCAATTTTC 57.264 33.333 0.00 0.00 0.00 2.29
5103 5478 6.569127 TCCCCAAATAGTTACTGATAGCAA 57.431 37.500 0.00 0.00 0.00 3.91
5185 5561 3.634504 TCTGATGGCCTGTTATTTGCAT 58.365 40.909 3.32 0.00 0.00 3.96
5370 5752 7.727331 CCAAGAATTTGGCATGTTTTTCTTA 57.273 32.000 0.00 0.00 46.84 2.10
5542 6208 7.847487 TCTTTATTTCGATAGGCATTTGTACG 58.153 34.615 0.00 0.00 0.00 3.67
5615 6281 7.465353 TGAATCTTGCTTCACATGGAAAATA 57.535 32.000 0.00 0.00 34.44 1.40
5624 6294 5.534207 AACCAAATGAATCTTGCTTCACA 57.466 34.783 0.00 0.00 37.93 3.58
5637 6307 7.704472 GTGTGTTTTGTGATCTTAACCAAATGA 59.296 33.333 0.00 0.00 0.00 2.57
5836 9724 0.872388 CCAAACACACCCTAAGCGTC 59.128 55.000 0.00 0.00 0.00 5.19
5840 9728 1.073923 AGCTCCCAAACACACCCTAAG 59.926 52.381 0.00 0.00 0.00 2.18
5960 9849 8.576442 CCACAGTTTTTGAGATACTATGGTTTT 58.424 33.333 0.00 0.00 32.97 2.43
6127 10027 0.456221 CGGTCGGCACTAAGTCATCT 59.544 55.000 0.00 0.00 0.00 2.90
6192 10111 4.056125 CTGCTCGCCGACCTGTCA 62.056 66.667 0.00 0.00 0.00 3.58
6730 12157 9.692325 AACATTATTAGGAAGAGCTTCAGAAAT 57.308 29.630 11.90 9.69 41.20 2.17
6739 12166 6.349300 TGAGGTCAACATTATTAGGAAGAGC 58.651 40.000 0.00 0.00 0.00 4.09
6758 12185 1.103398 GGCTTGTGTGCTGTTGAGGT 61.103 55.000 0.00 0.00 0.00 3.85
6767 12194 1.172180 TGGTTAGCTGGCTTGTGTGC 61.172 55.000 0.00 0.00 0.00 4.57
6978 12424 3.880490 CTGTCTCTACCTACAGGCTACAG 59.120 52.174 0.00 0.00 39.55 2.74
6979 12425 3.887352 CTGTCTCTACCTACAGGCTACA 58.113 50.000 0.00 0.00 39.55 2.74
7063 12530 0.829333 GCCTCTTCTCTCTGCCATGA 59.171 55.000 0.00 0.00 0.00 3.07
7103 12578 2.735772 GCGAGGATGGAGGCTTGGA 61.736 63.158 0.00 0.00 0.00 3.53
7120 12595 4.101448 ATCCTCCCACCTGCACGC 62.101 66.667 0.00 0.00 0.00 5.34
7230 12705 1.227943 CATATGGACCCCACCGCTG 60.228 63.158 0.00 0.00 35.80 5.18
7264 12797 6.347402 CCGTTGTTGAATTGAAACTATCGAGT 60.347 38.462 0.00 0.00 37.59 4.18
7268 12801 5.856455 CACCCGTTGTTGAATTGAAACTATC 59.144 40.000 0.00 0.00 0.00 2.08
7296 12830 2.626785 TGGTAGGTTCCACCAGAATCA 58.373 47.619 8.36 0.00 41.17 2.57
7408 12942 0.251033 TCGAGAAGACTCCCGTGGAA 60.251 55.000 0.00 0.00 39.76 3.53
7421 12955 0.598158 CCCGTTTGGTTCGTCGAGAA 60.598 55.000 0.00 0.00 36.31 2.87
7467 13005 2.112815 CCAATTTCTCCCCGACGGC 61.113 63.158 8.86 0.00 0.00 5.68
7547 13085 0.759959 TTTCCAGCCGTCAACCACTA 59.240 50.000 0.00 0.00 0.00 2.74
7568 13106 0.101399 CGAATACCAGCAGTCTCGCT 59.899 55.000 0.00 0.00 45.21 4.93
7576 13114 2.166870 ACATAACCGACGAATACCAGCA 59.833 45.455 0.00 0.00 0.00 4.41
7625 13166 1.072852 GCATGCCATCTCCTCTCCC 59.927 63.158 6.36 0.00 0.00 4.30
7628 13169 3.802862 CAAGCATGCCATCTCCTCT 57.197 52.632 15.66 0.00 0.00 3.69
7681 13222 2.086094 CACATCAGCAAGCATACCACA 58.914 47.619 0.00 0.00 0.00 4.17
7686 13227 1.655484 CGTCCACATCAGCAAGCATA 58.345 50.000 0.00 0.00 0.00 3.14
7731 13272 4.790718 ACCTAAATAGTTCATCCCCACC 57.209 45.455 0.00 0.00 0.00 4.61
7796 13355 5.886960 ACACTTCTCCAATTGATTAGTGC 57.113 39.130 20.19 0.00 37.60 4.40
7805 13364 4.357918 AGCACAGTACACTTCTCCAATT 57.642 40.909 0.00 0.00 0.00 2.32
7815 13374 2.470821 AGAACGACAAGCACAGTACAC 58.529 47.619 0.00 0.00 0.00 2.90
7942 13524 8.893727 CCAGAACGGAAATTATTCTACTCATTT 58.106 33.333 0.00 0.00 36.56 2.32
7956 13538 4.589908 ACATCTTTAGCCAGAACGGAAAT 58.410 39.130 0.00 0.00 36.56 2.17
7983 13565 3.927142 ACTGTTGCTCGCTAAACTATGTC 59.073 43.478 0.00 0.00 0.00 3.06
7994 13576 2.996621 ACTAAATGAGACTGTTGCTCGC 59.003 45.455 0.00 0.00 35.15 5.03
8007 13589 9.459640 GCATACTATTGTTCGACTACTAAATGA 57.540 33.333 0.00 0.00 0.00 2.57
8008 13590 9.244799 TGCATACTATTGTTCGACTACTAAATG 57.755 33.333 0.00 0.00 0.00 2.32
8064 13646 4.983090 GCACACATGCGCACTATC 57.017 55.556 14.90 0.00 43.33 2.08
8085 13667 4.854173 TGCATACAGAAGATAAAAGGGCA 58.146 39.130 0.00 0.00 0.00 5.36
8140 13722 1.047596 ATGCTTTGCCACCACAACCA 61.048 50.000 0.00 0.00 0.00 3.67
8361 13945 1.536943 AAGCGGGACCTGTCTCACTC 61.537 60.000 1.33 0.00 0.00 3.51
8405 13994 4.410400 GGGGTGCCCTCAGGAACG 62.410 72.222 7.26 0.00 43.81 3.95
8414 14003 0.322906 CTTGAAAGAGAGGGGTGCCC 60.323 60.000 0.00 0.00 45.90 5.36
8415 14004 0.693049 TCTTGAAAGAGAGGGGTGCC 59.307 55.000 0.00 0.00 0.00 5.01
8425 14014 2.007049 GCCGCGAATCCTCTTGAAAGA 61.007 52.381 8.23 0.00 0.00 2.52
8426 14015 0.375106 GCCGCGAATCCTCTTGAAAG 59.625 55.000 8.23 0.00 0.00 2.62
8427 14016 0.036388 AGCCGCGAATCCTCTTGAAA 60.036 50.000 8.23 0.00 0.00 2.69
8428 14017 0.740868 CAGCCGCGAATCCTCTTGAA 60.741 55.000 8.23 0.00 0.00 2.69
8429 14018 1.153568 CAGCCGCGAATCCTCTTGA 60.154 57.895 8.23 0.00 0.00 3.02
8430 14019 0.179111 TACAGCCGCGAATCCTCTTG 60.179 55.000 8.23 0.00 0.00 3.02
8431 14020 0.179108 GTACAGCCGCGAATCCTCTT 60.179 55.000 8.23 0.00 0.00 2.85
8432 14021 1.038130 AGTACAGCCGCGAATCCTCT 61.038 55.000 8.23 0.00 0.00 3.69
8433 14022 0.666913 TAGTACAGCCGCGAATCCTC 59.333 55.000 8.23 0.00 0.00 3.71
8434 14023 0.669077 CTAGTACAGCCGCGAATCCT 59.331 55.000 8.23 0.00 0.00 3.24
8435 14024 0.940047 GCTAGTACAGCCGCGAATCC 60.940 60.000 8.23 0.00 45.23 3.01
8436 14025 2.507643 GCTAGTACAGCCGCGAATC 58.492 57.895 8.23 0.00 45.23 2.52
8437 14026 4.732106 GCTAGTACAGCCGCGAAT 57.268 55.556 8.23 0.00 45.23 3.34
8509 14098 5.929697 AATATAGCGACACACCAATCATG 57.070 39.130 0.00 0.00 0.00 3.07
8510 14099 6.054941 TGAAATATAGCGACACACCAATCAT 58.945 36.000 0.00 0.00 0.00 2.45
8518 14141 5.660460 ACTGTGATGAAATATAGCGACACA 58.340 37.500 0.00 0.00 36.03 3.72
8529 14152 8.330466 TGGAAAATAACGTACTGTGATGAAAT 57.670 30.769 0.00 0.00 0.00 2.17
8551 14174 6.048732 ACAATACATACACACACATCTGGA 57.951 37.500 0.00 0.00 0.00 3.86
8553 14176 7.017055 CACAACAATACATACACACACATCTG 58.983 38.462 0.00 0.00 0.00 2.90
8555 14178 7.127917 TCACAACAATACATACACACACATC 57.872 36.000 0.00 0.00 0.00 3.06
8574 14210 1.967779 TCCCACACGAGATCTTCACAA 59.032 47.619 0.00 0.00 0.00 3.33
8593 14229 1.761174 TTCCCACTGGCAGGAAGTC 59.239 57.895 20.34 0.00 37.23 3.01
8599 14235 1.065199 TGATAAGCTTCCCACTGGCAG 60.065 52.381 14.16 14.16 0.00 4.85
8602 14238 2.173356 TGGATGATAAGCTTCCCACTGG 59.827 50.000 0.00 0.00 39.48 4.00
8606 14242 1.143684 GCCTGGATGATAAGCTTCCCA 59.856 52.381 0.00 2.23 39.48 4.37
8608 14244 1.423161 AGGCCTGGATGATAAGCTTCC 59.577 52.381 3.11 0.00 40.38 3.46
8616 14252 2.195139 GCTGCAGGCCTGGATGAT 59.805 61.111 33.46 0.00 34.27 2.45
8642 14278 1.651240 CGTTTCCATGGAGCTGGCAG 61.651 60.000 15.53 10.94 36.16 4.85
8654 14290 0.323629 CCTTGGTCCTAGCGTTTCCA 59.676 55.000 0.00 0.00 0.00 3.53
8660 14296 1.471119 TGTAGTCCTTGGTCCTAGCG 58.529 55.000 0.00 0.00 0.00 4.26
8662 14298 5.598830 ACATACATGTAGTCCTTGGTCCTAG 59.401 44.000 11.91 0.00 39.68 3.02
8670 14306 7.841282 ACTAGCATACATACATGTAGTCCTT 57.159 36.000 11.91 0.00 45.46 3.36
8685 14337 0.652592 CGCTGCACCAACTAGCATAC 59.347 55.000 0.00 0.00 40.42 2.39
8686 14338 0.534873 TCGCTGCACCAACTAGCATA 59.465 50.000 0.00 0.00 40.42 3.14
8688 14340 1.667830 GTCGCTGCACCAACTAGCA 60.668 57.895 0.00 0.00 37.29 3.49
8718 14388 2.762327 GGATCCAATGGTGCATTTCTGT 59.238 45.455 6.95 0.00 31.05 3.41
8724 14394 1.829533 GCCGGATCCAATGGTGCAT 60.830 57.895 13.41 0.00 0.00 3.96
8764 14434 0.613260 TTGTCTAGCTTGGTCCGCAT 59.387 50.000 0.00 0.00 0.00 4.73
8777 14447 6.114187 TCTCCAGAGAAATTTGCTTGTCTA 57.886 37.500 0.00 0.00 33.91 2.59
8790 14460 3.573967 TGCATGCGTATATCTCCAGAGAA 59.426 43.478 14.09 0.00 41.36 2.87
8805 14488 1.926510 TCGTTACTGAAGATGCATGCG 59.073 47.619 14.09 0.00 0.00 4.73
8806 14489 3.310774 ACATCGTTACTGAAGATGCATGC 59.689 43.478 11.82 11.82 43.91 4.06
8810 16948 5.980116 AGATGTACATCGTTACTGAAGATGC 59.020 40.000 26.13 1.61 43.91 3.91
8818 16956 4.720649 ACTGCAGATGTACATCGTTACT 57.279 40.909 26.13 9.18 42.48 2.24
8821 16959 3.367932 CGAAACTGCAGATGTACATCGTT 59.632 43.478 26.13 20.86 42.48 3.85
8827 16965 3.722123 CGTTTCGAAACTGCAGATGTAC 58.278 45.455 31.88 8.52 36.77 2.90
8830 16968 1.069973 TGCGTTTCGAAACTGCAGATG 60.070 47.619 34.78 22.49 40.58 2.90
8879 17017 1.984026 TGCTGGGCTCGAGATGTGA 60.984 57.895 18.75 0.00 0.00 3.58
8951 17091 2.421314 CTCACAGTGGCGGTGTCA 59.579 61.111 0.00 0.00 37.52 3.58
9192 17398 6.327626 ACCTACTCGTACCTACCTATGAAGTA 59.672 42.308 0.00 0.00 0.00 2.24
9224 17439 0.386858 TCGATAGCGCGGTGATTAGC 60.387 55.000 23.02 1.89 37.46 3.09
9225 17440 1.197036 TCTCGATAGCGCGGTGATTAG 59.803 52.381 23.02 13.07 37.46 1.73
9226 17441 1.069432 GTCTCGATAGCGCGGTGATTA 60.069 52.381 23.02 0.00 37.46 1.75
9227 17442 0.317938 GTCTCGATAGCGCGGTGATT 60.318 55.000 23.02 5.41 37.46 2.57
9228 17443 1.283181 GTCTCGATAGCGCGGTGAT 59.717 57.895 23.02 10.42 37.46 3.06
9229 17444 2.048312 CTGTCTCGATAGCGCGGTGA 62.048 60.000 23.02 8.98 37.46 4.02
9231 17446 2.113433 ACTGTCTCGATAGCGCGGT 61.113 57.895 17.70 17.70 37.46 5.68
9236 17451 3.232213 TCAAACCACTGTCTCGATAGC 57.768 47.619 0.00 0.00 0.00 2.97
9242 17457 8.821894 GTCAGAATTATATCAAACCACTGTCTC 58.178 37.037 0.00 0.00 0.00 3.36
9245 17460 6.538742 CCGTCAGAATTATATCAAACCACTGT 59.461 38.462 0.00 0.00 0.00 3.55
9248 17463 5.527582 AGCCGTCAGAATTATATCAAACCAC 59.472 40.000 0.00 0.00 0.00 4.16
9538 17756 3.402628 AAATTCAGACCGTGCACTACT 57.597 42.857 16.19 8.29 0.00 2.57
9539 17757 3.746492 AGAAAATTCAGACCGTGCACTAC 59.254 43.478 16.19 6.00 0.00 2.73
9540 17758 3.745975 CAGAAAATTCAGACCGTGCACTA 59.254 43.478 16.19 0.00 0.00 2.74
9542 17760 2.548057 TCAGAAAATTCAGACCGTGCAC 59.452 45.455 6.82 6.82 0.00 4.57
9544 17762 3.896648 TTCAGAAAATTCAGACCGTGC 57.103 42.857 0.00 0.00 0.00 5.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.